Citrus Sinensis ID: 006624
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LW84 | 642 | Pentatricopeptide repeat- | yes | no | 0.984 | 0.978 | 0.691 | 0.0 | |
| Q9M907 | 871 | Pentatricopeptide repeat- | no | no | 0.874 | 0.640 | 0.261 | 2e-66 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.793 | 0.824 | 0.295 | 2e-61 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.775 | 0.785 | 0.289 | 1e-58 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.775 | 0.783 | 0.279 | 1e-57 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.768 | 0.769 | 0.293 | 2e-57 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.910 | 0.634 | 0.258 | 6e-57 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.789 | 0.811 | 0.288 | 2e-56 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.721 | 0.561 | 0.286 | 2e-56 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.835 | 0.706 | 0.281 | 3e-56 |
| >sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/632 (69%), Positives = 532/632 (84%), Gaps = 4/632 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDE 64
S ++KR IS+L L QR KQTENEIV MF + P E P K K +RKD S R LDE
Sbjct: 8 SGSAKRSISSLPHLSQRFKQTENEIVQMFSV--PNHEESEKPQEKWKLSRKDPSVRMLDE 65
Query: 65 RFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHN 124
RFIRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125
Query: 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIF 183
+TYM LIRCL+E R+ G M+++IQ++VR+T V + P+VLSE+V LG+AKMV+KALS+F
Sbjct: 126 CSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVF 185
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
YQ K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ K
Sbjct: 186 YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK 245
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
LGR+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYT
Sbjct: 246 LGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYT 305
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
YTELIKGLG+AGRV++AYG + +ML++G PD+V +NNL+N+LG+ GR+E+ +F++M
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMG 365
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+C P VV+YNTVIK+LFESKA SE S+WF+KMKA+ V PS FTYSILIDG+CKTNRV
Sbjct: 366 MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRV 425
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
EKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVM
Sbjct: 426 EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
IKHFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGMI++A SLLR+MEE+GC
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DINSHNIILNG A++G P+RA+E+F ++HS IKPD V+YNT+LGC + AGMFEEAAR
Sbjct: 546 RADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAAR 605
Query: 604 LMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
+M++M KGFEYD ITYSSIL+AVG VD +++
Sbjct: 606 MMREMKDKGFEYDAITYSSILDAVGNVDHEKD 637
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 157/600 (26%), Positives = 290/600 (48%), Gaps = 42/600 (7%)
Query: 69 ILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTY 128
+L+ WGP AE L L + V VL ++N I++F+W RR H +Y
Sbjct: 42 VLETGPWGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESY 101
Query: 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV-------------------------- 162
+L+ + R + + + +M S GPSV
Sbjct: 102 NSLLLVMARCRNFDALDQILGEM--SVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMM 159
Query: 163 --------LSEIVNILGKAKMVNKA---LSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211
S ++G VN + L++F Q++ +PT + + ++I +EG
Sbjct: 160 RKFKFRPAFSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRV 219
Query: 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271
+ L +EM + D V Y+ I +FGK+G+ A + F E++ NGL+P YT+
Sbjct: 220 DSALSLLDEM-KSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTS 278
Query: 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331
++ + K +++A+ + + ++ Y Y +I G G AG+ ++AY L +G
Sbjct: 279 MIGVLCKANRLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLLERQRAKG 338
Query: 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391
P ++ N ++ L + G++++ALK+F +M+ PN+ TYN +I L + A
Sbjct: 339 SIPSVIAYNCILTCLRKMGKVDEALKVFEEMKK-DAAPNLSTYNILIDMLCRA-GKLDTA 396
Query: 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451
+ M+ G+ P+ T +I++D CK+ ++++A + EEM+ K P +CSLI+G
Sbjct: 397 FELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDG 456
Query: 452 YGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD 511
GK R + A +++ ++ + +++ VY +IK+F GR D ++ +M C PD
Sbjct: 457 LGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPD 516
Query: 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571
+ N M M +AG + ++ ++ VPD S++I+++GL K+G E+F
Sbjct: 517 LQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFY 576
Query: 572 KMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631
M+ D +YN ++ + G +A +L+++M KGFE +TY S+++ + K+D
Sbjct: 577 SMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKID 636
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (605), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 152/514 (29%), Positives = 258/514 (50%), Gaps = 8/514 (1%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV--LSEIVNILGKAKMVNKAL 180
HN TY +I CL + + M++ GPS+ L+ ++N +++A+
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMKLG--YGPSIVTLNSLLNGFCHGNRISEAV 155
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
++ Q+ +P T+ +++ L Q + L M +G C PD VTY A+I+
Sbjct: 156 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVING 214
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
K G A+ L ++M++ ++ IY+T++ K V+ AL L EM KG
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
V+TY+ LI L GR DA L +ML+ P++V N+LI+ + G+L +A KLF+
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M PN+VTYN++I F EA F M + LP TY+ LI+GFCK
Sbjct: 335 EMIQRSIDPNIVTYNSLING-FCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
+V L +M +G Y +LI+G+ +A + A +F ++ + Y
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
++ K G+L A+ +F ++K + +PD+YTYN + GM +AG ++D + L +
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600
G PD+ ++N +++G K G + A +F KM+ PD+ +YNT++ R G
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573
Query: 601 AARLMKDMNAKGFEYDQITYSSILEAV--GKVDE 632
+A L+K+M + F D TY + + + G++D+
Sbjct: 574 SAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDK 607
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/497 (28%), Positives = 246/497 (49%), Gaps = 2/497 (0%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182
HN TY LI C + + + M++ LS ++N +K +++A+++
Sbjct: 114 HNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVAL 173
Query: 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242
Q+ +P T+N++I L + L + M +G C PD VTY +++
Sbjct: 174 VDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKG-CQPDLVTYGVVVNGLC 232
Query: 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302
K G A L ++M++ L+P IY T++ K ++ AL L +EM+ KG V
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292
Query: 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362
TY+ LI L GR DA L +M++ PD+ + LI+ + G+L +A KL+++M
Sbjct: 293 TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352
Query: 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422
P++VTY+++I F EA FE M + P TY+ LI GFCK R
Sbjct: 353 VKRSIDPSIVTYSSLING-FCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKR 411
Query: 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAV 482
VE+ + EM ++G Y LI G +A + A E+F E+ + Y
Sbjct: 412 VEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNT 471
Query: 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDG 542
++ K G+L A+ +F +++ + +P +YTYN ++ GM +AG ++D + L + G
Sbjct: 472 LLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531
Query: 543 CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAA 602
PD+ ++N +++G + G + A +F +M+ P++ YNT++ R G E +A
Sbjct: 532 VKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASA 591
Query: 603 RLMKDMNAKGFEYDQIT 619
L+K+M + GF D T
Sbjct: 592 ELIKEMRSCGFAGDAST 608
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/497 (27%), Positives = 247/497 (49%), Gaps = 2/497 (0%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182
H+ TY I C + + + M++ LS ++N +K ++ A+++
Sbjct: 116 HDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVAL 175
Query: 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242
Q+ KP T+ ++I L + L ++M G C PD VTY +++
Sbjct: 176 VDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTVVNGLC 234
Query: 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302
K G A+ L +M++ ++ IY T++ K ++ AL L EM KG V+
Sbjct: 235 KRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVF 294
Query: 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362
TY+ LI L GR DA L +M++ P++V + LI+ + G+L +A KL+++M
Sbjct: 295 TYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEM 354
Query: 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422
P++ TY+++I F EA FE M + P+ TYS LI GFCK R
Sbjct: 355 IKRSIDPDIFTYSSLING-FCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413
Query: 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAV 482
VE+ L EM ++G Y +LI+G+ +A+ + A +F ++ + Y +
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473
Query: 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDG 542
++ K G+L+ A+ +F +++ +PD+YTYN ++ GM +AG ++D + L + G
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533
Query: 543 CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAA 602
P++ ++N +++G + G + A + KM+ P++ +YNT++ R G E +A
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDREASA 593
Query: 603 RLMKDMNAKGFEYDQIT 619
L+K+M + GF D T
Sbjct: 594 ELIKEMRSCGFAGDAST 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (571), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/501 (29%), Positives = 251/501 (50%), Gaps = 11/501 (2%)
Query: 135 LDETRMIGVMWKSIQ-DMVRSTC--------VMGPSVLSEIVNILGKAKMVNKALSIFYQ 185
+D +R+ + K+ Q D+V + C LS ++N + + + A S +
Sbjct: 89 IDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGK 148
Query: 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245
I +P T++++I L EG + EL + M G+ PD +T + L++ G
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGH-KPDLITINTLVNGLCLSG 207
Query: 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
++ A+ L D+M E G QP A Y ++++ K G+ A+ L+++M+ + L Y+
Sbjct: 208 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
+I GL + G +++A+ LF M +G +I+ N LI AGR +D KL M
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ PNVVT++ +I S F + EA ++M G+ P TY+ LIDGFCK N ++K
Sbjct: 328 KINPNVVTFSVLIDS-FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
A+ +++ M KG P + LINGY KA R + ELF ++ + Y +I+
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
F + G+L+ A +LF EM + P++ TY L+ G+ G + A + ++E+
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLM 605
DI +NII++G+ + A ++F + +KP +YN ++G L + G EA L
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 606 KDMNAKGFEYDQITYSSILEA 626
+ M G D TY+ ++ A
Sbjct: 567 RKMEEDGHAPDGWTYNILIRA 587
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 167/646 (25%), Positives = 290/646 (44%), Gaps = 65/646 (10%)
Query: 47 PVSKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEIN 106
P+ + +++ + + R + IL W +L+ + + V + ++D++
Sbjct: 47 PLLRNLPEEESDSMSVPHRLLSILSKPNW--HKSPSLKSMVSAISPSHVSSLFSLDLDPK 104
Query: 107 VKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL--- 163
+ F W + ++H+ +Y +L+ L +GV++K M++S +G ++
Sbjct: 105 TALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVVFKIRLLMIKSCDSVGDALYVLD 164
Query: 164 ----------------------SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201
+ ++N L + +V++ ++ ++ K P TYN M
Sbjct: 165 LCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224
Query: 202 ILMLMQEG-------YYEKIHE----------------------------LYNEMCNEGN 226
+ + G Y KI E ++NEM +G
Sbjct: 225 VNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKG- 283
Query: 227 CFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286
C + V Y+ LI R A+ LF +MK++ PT + YT L+ +AL
Sbjct: 284 CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEAL 343
Query: 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346
LV+EM+ G ++TYT LI L + E A L ML++G P+++ N LIN
Sbjct: 344 NLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGY 403
Query: 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS 406
+ G +EDA+ + ME+ + PN TYN +IK K+ +A KM VLP
Sbjct: 404 CKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGY--CKSNVHKAMGVLNKMLERKVLPD 461
Query: 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466
TY+ LIDG C++ + A+ LL M ++G P Y S+I+ K+KR E A +LF
Sbjct: 462 VVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFD 521
Query: 467 ELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG 526
L++ + +Y +I + K G++ +A + +M C P+ T+NAL+ G+ G
Sbjct: 522 SLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADG 581
Query: 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586
+ +A L +M + G P +++ I+++ L K G A F +M S KPDA +Y
Sbjct: 582 KLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYT 641
Query: 587 TILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632
T + R G +A +M M G D TYSS+++ G + +
Sbjct: 642 TFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQ 687
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 149/516 (28%), Positives = 256/516 (49%), Gaps = 12/516 (2%)
Query: 133 RCLDETRMIGVMWKSIQ-DMVRSTC--------VMGPSVLSEIVNILGKAKMVNKALSIF 183
R +D +R+ V+ ++ Q D+V C LS ++N + + ++ A S
Sbjct: 71 RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAM 130
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
+I +P T++++I L EG + EL + M G+ P +T +AL++
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGH-KPTLITLNALVNGLCL 189
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
G+ A+ L D M E G QP Y ++ + K G+ A+ L+++M+ + L
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
Y+ +I GL + G +++A+ LF M +G K DI++ LI AGR +D KL M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+ P+VV ++ +I F + EA ++M G+ P TY+ LIDGFCK N++
Sbjct: 310 KRKITPDVVAFSALIDC-FVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
+KA+ +L+ M KG P + LINGY KA + ELF ++ + Y +
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
I+ F + G+L A +LF EM R +PD+ +Y L+ G+ G + A + ++E+
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DI +NII++G+ + A ++F + +KPD +YN ++G L + G EA
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548
Query: 604 LMKDMNAKGFEYDQITYSSILEA-VGKVDEDRNPTL 638
L + M G + TY+ ++ A +G+ D ++ L
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (561), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 155/541 (28%), Positives = 256/541 (47%), Gaps = 81/541 (14%)
Query: 166 IVNILGK-AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224
I+N+ GK NK S+ ++KS P A TYN++I + +++ +++ EM
Sbjct: 249 ILNVFGKMGTPWNKITSLVEKMKSDGIAPDAYTYNTLITCCKRGSLHQEAAQVFEEMKAA 308
Query: 225 GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284
G + D VTY+AL+ +GK R A+++ +EM NG P+ Y +L+S Y + G +++
Sbjct: 309 GFSY-DKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDE 367
Query: 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344
A+ L +M KG V+TYT L+ G RAG+VE A +F M GCKP+I N I
Sbjct: 368 AMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGCKPNICTFNAFIK 427
Query: 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404
+ G G+ + +K+F+++ P++VT+NT++ ++F SE S F++MK G +
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLL-AVFGQNGMDSEVSGVFKEMKRAGFV 486
Query: 405 PSPFTYSILIDGFCKTNRVEKA-----------------------------------HLL 429
P T++ LI + + E+A +
Sbjct: 487 PERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKV 546
Query: 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHF-- 487
L EME+ P YCSL++ Y K + L E+ Y G R AV++K
Sbjct: 547 LAEMEDGRCKPNELTYCSLLHAYANGKEIGLMHSLAEEV--YSGVIEPR--AVLLKTLVL 602
Query: 488 --GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
KC L +A F+E+K+ PD+ T N+++S R M+ A +L M+E G P
Sbjct: 603 VCSKCDLLPEAERAFSELKERGFSPDITTLNSMVSIYGRRQMVAKANGVLDYMKERGFTP 662
Query: 546 -----------------------------------DINSHNIILNGLAKSGGPKRAMEIF 570
DI S+N ++ ++ + A IF
Sbjct: 663 SMATYNSLMYMHSRSADFGKSEEILREILAKGIKPDIISYNTVIYAYCRNTRMRDASRIF 722
Query: 571 TKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630
++M++S I PD ++YNT +G + MFEEA +++ M G +Q TY+SI++ K+
Sbjct: 723 SEMRNSGIVPDVITYNTFIGSYAADSMFEEAIGVVRYMIKHGCRPNQNTYNSIVDGYCKL 782
Query: 631 D 631
+
Sbjct: 783 N 783
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 156/554 (28%), Positives = 263/554 (47%), Gaps = 21/554 (3%)
Query: 69 ILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEIN----VKIQFFK---WAGRRRNF 121
IL + W D ++ D +++LN+ V+ N V+I K W
Sbjct: 137 ILSVVDWMIDE------FGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWG-----I 185
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
+ + +T+ LI+ L + ++DM V + ++ + ++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
I Q+ C + + N ++ +EG E EM N+ FPD T++ L++
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
K G AI + D M + G P Y +++S KLGEV++A+ ++ +M + C+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNT 365
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
TY LI L + +VE+A L + +G PD+ N+LI L A++LF +
Sbjct: 366 VTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEE 425
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
M + C+P+ TYN +I SL SK EA ++M+ +G S TY+ LIDGFCK N
Sbjct: 426 MRSKGCEPDEFTYNMLIDSLC-SKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKAN 484
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
+ +A + +EME G Y +LI+G K++R E A +L ++ Y
Sbjct: 485 KTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYN 544
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
++ HF + G + A D+ M C+PD+ TY L+SG+ +AG ++ A LLR ++
Sbjct: 545 SLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMK 604
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM-QHSEIKPDAVSYNTIL-GCLSRAGMFE 599
G +++N ++ GL + A+ +F +M + +E PDAVSY + G + G
Sbjct: 605 GINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIR 664
Query: 600 EAARLMKDMNAKGF 613
EA + ++ KGF
Sbjct: 665 EAVDFLVELLEKGF 678
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | ||||||
| 225442663 | 725 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.877 | 0.798 | 0.0 | |
| 297743291 | 638 | unnamed protein product [Vitis vinifera] | 0.993 | 0.993 | 0.8 | 0.0 | |
| 449467657 | 637 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.998 | 0.767 | 0.0 | |
| 449484944 | 637 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.996 | 0.998 | 0.764 | 0.0 | |
| 255574572 | 642 | pentatricopeptide repeat-containing prot | 0.990 | 0.984 | 0.769 | 0.0 | |
| 357454999 | 639 | Beta-D-galactosidase [Medicago truncatul | 0.993 | 0.992 | 0.751 | 0.0 | |
| 224058846 | 609 | predicted protein [Populus trichocarpa] | 0.948 | 0.993 | 0.784 | 0.0 | |
| 356547408 | 631 | PREDICTED: pentatricopeptide repeat-cont | 0.974 | 0.985 | 0.741 | 0.0 | |
| 297830178 | 642 | pentatricopeptide repeat-containing prot | 0.984 | 0.978 | 0.704 | 0.0 | |
| 15233259 | 642 | pentatricopeptide repeat-containing prot | 0.984 | 0.978 | 0.691 | 0.0 |
| >gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/636 (79%), Positives = 572/636 (89%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M+ GSI +R ISTL L QRIKQTE+EIV MF+LS P DE++ P+++KF R + S R
Sbjct: 1 MISGSIPLRRMISTLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWGPDAEKALEVLK++VDHRLV +VL IDVEI+VKIQFFKWAG+RRNF
Sbjct: 61 LDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
EH+STTYMALI CLDE M+G MWK+IQ+MVRSTCV+GP+ LSEIV +LGKAKMVNKALS
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
IFYQIK RKCKPT+NTYNSMILMLMQEG++EK+HELYNEMCNEG+C PDTVTYSALI+AF
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKLGRD SAI LFDEMKENGL PTAKIYTT++ IYFKLG VEKALGLVQEMK KGCALTV
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
YTYTELIKG+G+AG+VE+AY +FMNMLKEGCKPD+VLINNLIN+LG+AGRL DA+KLF +
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEE 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
ME+LQC PNVVTYNTVIK+LFESKA ASEA W+EKMK NGV+PS FTYSILIDGFCKTN
Sbjct: 361 MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGF PCPAAYCSLIN GKAKRYEAANELF EL+E CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKH GKCGRLS+AVDLFNEMKKL C PDVY YNALMSGMVR GM D+A+SLLR MEE+
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PD+NSHNIILNG A++GGPK A+E+FT+M++S+IKPD VSYNT+LGCLSRAGMFEEA
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
A+LMK+MN+KGFEYD ITYSSILEAVGK+DED P
Sbjct: 601 AKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHTPA 636
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743291|emb|CBI36158.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2780), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 508/635 (80%), Positives = 572/635 (90%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M+ GSI +R ISTL L QRIKQTE+EIV MF+LS P DE++ P+++KF R + S R
Sbjct: 1 MISGSIPLRRMISTLPHLSQRIKQTESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWGPDAEKALEVLK++VDHRLV +VL IDVEI+VKIQFFKWAG+RRNF
Sbjct: 61 LDERFIRILKIFKWGPDAEKALEVLKLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
EH+STTYMALI CLDE M+G MWK+IQ+MVRSTCV+GP+ LSEIV +LGKAKMVNKALS
Sbjct: 121 EHDSTTYMALIHCLDEAGMLGEMWKTIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
IFYQIK RKCKPT+NTYNSMILMLMQEG++EK+HELYNEMCNEG+C PDTVTYSALI+AF
Sbjct: 181 IFYQIKGRKCKPTSNTYNSMILMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKLGRD SAI LFDEMKENGL PTAKIYTT++ IYFKLG VEKALGLVQEMK KGCALTV
Sbjct: 241 GKLGRDDSAISLFDEMKENGLHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
YTYTELIKG+G+AG+VE+AY +FMNMLKEGCKPD+VLINNLIN+LG+AGRL DA+KLF +
Sbjct: 301 YTYTELIKGVGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEE 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
ME+LQC PNVVTYNTVIK+LFESKA ASEA W+EKMK NGV+PS FTYSILIDGFCKTN
Sbjct: 361 MESLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGF PCPAAYCSLIN GKAKRYEAANELF EL+E CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAKRYEAANELFQELRENCGYSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKH GKCGRLS+AVDLFNEMKKL C PDVY YNALMSGMVR GM D+A+SLLR MEE+
Sbjct: 481 VMIKHLGKCGRLSEAVDLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEEN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PD+NSHNIILNG A++GGPK A+E+FT+M++S+IKPD VSYNT+LGCLSRAGMFEEA
Sbjct: 541 GCTPDLNSHNIILNGFARTGGPKGAIEMFTRMKNSKIKPDVVSYNTVLGCLSRAGMFEEA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636
A+LMK+MN+KGFEYD ITYSSILEAVGK+DED P
Sbjct: 601 AKLMKEMNSKGFEYDLITYSSILEAVGKIDEDHTP 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449467657|ref|XP_004151539.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/636 (76%), Positives = 557/636 (87%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M S+ASKR IS+L L RIKQTENEIV MF++S P E NF ++K R+D S R
Sbjct: 1 MNFTSLASKRSISSLHPLSTRIKQTENEIVQMFRVSTPSPEASNFSFNRKVLRRDPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWG DAEKA+EVLK++VDHRLVHQVL+IDVEI KIQFFKWAG+R++F
Sbjct: 61 LDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLDIDVEIRAKIQFFKWAGKRQHF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
+H+STTYMALIRCL+E+ ++ MW++IQDM+RS C +GP+ SEI+ ILGKAKMVNKALS
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
+FYQIK RKC PTA YN++ILMLM EG++EKIHELYNE+C+EGNC PDT+TYSALISAF
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKL R A RLFDEMKENGL PT KIYTT++++YFKL +VE AL LV+EMKGKGCA TV
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
+TYTELIKGLG+ GRV+DAY LF NMLK+GCKPD+VLINNLIN+LGRAGRLEDALKLF K
Sbjct: 301 FTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGK 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
M++LQC PNVVTYNTVIK++FESKAPASEA+ WFEKMKANG+ PS FTY+ILIDGFCKTN
Sbjct: 361 MDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGFPPCPAAYCSLI+ G+AKRYEAANELF ELKE CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKHFG CGRLSDAVDLF EMKKL C PDVYTYNALMSGM+RAGMID+A+SL+R M E+
Sbjct: 481 VMIKHFGNCGRLSDAVDLFCEMKKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMREN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PDI SHNIILNGLAK+GGPKRA+E+FTKM+ SEI PDAVSYNTIL CLSRAGMFE A
Sbjct: 541 GCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
A+LM++M KGFEYD ITYSSILEAVGKVDED +PT
Sbjct: 601 AKLMREMKLKGFEYDSITYSSILEAVGKVDEDCSPT 636
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449484944|ref|XP_004157025.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g16010-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2653), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/636 (76%), Positives = 556/636 (87%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARK 61
M S+ASKR IS+L L RIKQTENEIV MF++S P E NF ++K R+D S R
Sbjct: 1 MNFTSLASKRSISSLHPLSTRIKQTENEIVQMFRVSTPSPEASNFSFNRKVLRRDPSVRT 60
Query: 62 LDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNF 121
LDERFIRILKIFKWG DAEKA+EVLK++VDHRLVHQVL+IDVEI KIQFFKWAG+R++F
Sbjct: 61 LDERFIRILKIFKWGSDAEKAIEVLKLKVDHRLVHQVLDIDVEIRAKIQFFKWAGKRQHF 120
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
+H+STTYMALIRCL+E+ ++ MW++IQDM+RS C +GP+ SEI+ ILGKAKMVNKALS
Sbjct: 121 QHDSTTYMALIRCLEESGLVDEMWRTIQDMIRSPCSVGPAEWSEILKILGKAKMVNKALS 180
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241
+FYQIK RKC PTA YN++ILMLM EG++EKIHELYNE+C+EGNC PDT+TYSALISAF
Sbjct: 181 VFYQIKGRKCNPTATVYNTLILMLMHEGHHEKIHELYNEICSEGNCSPDTITYSALISAF 240
Query: 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
GKL R A RLFDEMKENGL PT KIYTT++++YFKL +VE AL LV+EMKGKGCA TV
Sbjct: 241 GKLERYDFAFRLFDEMKENGLHPTEKIYTTILAMYFKLNKVEAALRLVEEMKGKGCAPTV 300
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
+TYTELIKGLG+ GRV+DAY LF NMLK+GCKPD+VLINNLIN+LGRAGRLEDALKLF K
Sbjct: 301 FTYTELIKGLGKVGRVDDAYSLFFNMLKDGCKPDVVLINNLINILGRAGRLEDALKLFGK 360
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421
M++LQC PNVVTYNTVIK++FESKAPASEA+ WFEKMKANG+ PS FTY+ILIDGFCKTN
Sbjct: 361 MDSLQCAPNVVTYNTVIKAIFESKAPASEAALWFEKMKANGIAPSSFTYAILIDGFCKTN 420
Query: 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYA 481
RVEKA LLLEEM+EKGFPPCPAAYCSLI+ G+AKRYEAANELF ELKE CG SSARVYA
Sbjct: 421 RVEKALLLLEEMDEKGFPPCPAAYCSLIDSLGRAKRYEAANELFQELKENCGRSSARVYA 480
Query: 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
VMIKHFG CGRLSDAVDLF E +KL C PDVYTYNALMSGM+RAGMID+A+SL+R M E+
Sbjct: 481 VMIKHFGNCGRLSDAVDLFCEXEKLGCSPDVYTYNALMSGMIRAGMIDEAHSLMRNMREN 540
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601
GC PDI SHNIILNGLAK+GGPKRA+E+FTKM+ SEI PDAVSYNTIL CLSRAGMFE A
Sbjct: 541 GCTPDIKSHNIILNGLAKTGGPKRAIEMFTKMKESEIMPDAVSYNTILSCLSRAGMFEMA 600
Query: 602 ARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
A+LM++M KGFEYD ITYSSILEAVGKVDED +PT
Sbjct: 601 AKLMREMKLKGFEYDSITYSSILEAVGKVDEDCSPT 636
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255574572|ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223532409|gb|EEF34204.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/633 (76%), Positives = 557/633 (87%), Gaps = 1/633 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDTSARKLDER 65
SI KR IST L +RIKQT+NEIV+MF++ ++M+N P+++KF+ KDTS RKLDER
Sbjct: 8 SIVLKRSISTSPHLYERIKQTDNEIVNMFRVPSMNNKMQNLPMNRKFSGKDTSTRKLDER 67
Query: 66 FIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNS 125
FIRILKIFKWGPDAEKALEVLK++VDHRLVH+VL IDVEINVKIQFFKWAG+RRNFEH+S
Sbjct: 68 FIRILKIFKWGPDAEKALEVLKLKVDHRLVHEVLKIDVEINVKIQFFKWAGKRRNFEHDS 127
Query: 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS-TCVMGPSVLSEIVNILGKAKMVNKALSIFY 184
+++MALI LDE G MWK+IQDMVRS TCV+ LSEIV +LGKAKMVNKALS+FY
Sbjct: 128 SSFMALIHSLDEAGFYGEMWKTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKALSVFY 187
Query: 185 QIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244
QIK RKCKP A TYNSMILML QEG+ EK+HE+YNEMCN+GNCFPDTVTYSALISAFGKL
Sbjct: 188 QIKGRKCKPAATTYNSMILMLKQEGHLEKVHEIYNEMCNDGNCFPDTVTYSALISAFGKL 247
Query: 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY 304
G SAIRLFDEMKENGL PTAKIYTTL+ IYFKL +VEKAL +++EMK KGC LTV+TY
Sbjct: 248 GHYDSAIRLFDEMKENGLYPTAKIYTTLLGIYFKLDKVEKALDVIKEMKDKGCTLTVFTY 307
Query: 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364
TE IKGLG+AGRV+DAY +F++M+K+GCKPD+VLIN+LIN+LG+ GRLE LKLF KME+
Sbjct: 308 TEWIKGLGKAGRVDDAYRVFLDMIKDGCKPDVVLINSLINILGKVGRLEVTLKLFRKMES 367
Query: 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424
QCKPNVVTYNTVIK+LFE KAPASEA++WFEKMK G+ PS FTYSILIDGFCKTNR+E
Sbjct: 368 WQCKPNVVTYNTVIKALFECKAPASEAASWFEKMKGCGIAPSSFTYSILIDGFCKTNRIE 427
Query: 425 KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMI 484
KA LLLEEM+EKGFPPCPAAYCSLIN GK KRYEAANELFLELKE CG SSARVYAVMI
Sbjct: 428 KALLLLEEMDEKGFPPCPAAYCSLINSLGKVKRYEAANELFLELKENCGHSSARVYAVMI 487
Query: 485 KHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544
KHFGKCGRLS+AVDLFNEM+KL KPDVY YNALMSGMVRAGMID+A SLLR M+E+GC
Sbjct: 488 KHFGKCGRLSEAVDLFNEMEKLGSKPDVYAYNALMSGMVRAGMIDEAQSLLRTMDENGCS 547
Query: 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARL 604
PD+NSHNIILNGLA++G P RA+E+F KM+ S IKPDAVSYNT+LGCLS AG+FEEAA+L
Sbjct: 548 PDLNSHNIILNGLARTGVPDRAIEMFAKMKSSIIKPDAVSYNTVLGCLSHAGLFEEAAKL 607
Query: 605 MKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637
M++MN KGFEY+ ITY+SILEAVGKVDEDR P
Sbjct: 608 MREMNLKGFEYNNITYTSILEAVGKVDEDRAPA 640
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357454999|ref|XP_003597780.1| Beta-D-galactosidase [Medicago truncatula] gi|357455013|ref|XP_003597787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355486828|gb|AES68031.1| Beta-D-galactosidase [Medicago truncatula] gi|355486835|gb|AES68038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 477/635 (75%), Positives = 559/635 (88%), Gaps = 1/635 (0%)
Query: 2 MVLGSIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPV-SKKFARKDTSAR 60
M+ G + ++R IST + QR+KQTENEIV MF+L +E P+ ++ RKD +AR
Sbjct: 1 MLPGFVTARRFISTSTPFTQRLKQTENEIVKMFRLPDSQEENHYVPMEGRRVLRKDPNAR 60
Query: 61 KLDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRN 120
KLDERFIRILKIFKWGPDAEKALEVLK+++D RLV +VL IDVE++VKIQFFKWAG++RN
Sbjct: 61 KLDERFIRILKIFKWGPDAEKALEVLKLKLDIRLVREVLKIDVEVHVKIQFFKWAGKKRN 120
Query: 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180
FEH+STTYMALIRCLDE R++G +W++IQDMV+S C +GPS LSEIV ILG+ KMVNKAL
Sbjct: 121 FEHDSTTYMALIRCLDENRLVGELWRTIQDMVKSPCAIGPSELSEIVKILGRVKMVNKAL 180
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
SIFYQ+K RKC+PTA TYNS+ILMLMQEG++EK+HELYNEMC+EG+CFPDTVTYSALISA
Sbjct: 181 SIFYQVKGRKCRPTAGTYNSVILMLMQEGHHEKVHELYNEMCSEGHCFPDTVTYSALISA 240
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
FGKL RD SA+RLFDEMKENGLQPTAKIYTTL+ IYFKLG+VE+AL LV EM+ + C T
Sbjct: 241 FGKLNRDDSAVRLFDEMKENGLQPTAKIYTTLMGIYFKLGKVEEALNLVHEMRMRRCVPT 300
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
VYTYTELI+GLG++GRVEDAYG++ NMLK+GCKPD+VL+NNLIN+LGR+ RL++A++LF
Sbjct: 301 VYTYTELIRGLGKSGRVEDAYGVYKNMLKDGCKPDVVLMNNLINILGRSDRLKEAVELFE 360
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M L C PNVVTYNT+IKSLFE KAP SEAS+W E+MK +GV+PS FTYSILIDGFCKT
Sbjct: 361 EMRLLNCTPNVVTYNTIIKSLFEDKAPPSEASSWLERMKKDGVVPSSFTYSILIDGFCKT 420
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
NRVEKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE CG SS RVY
Sbjct: 421 NRVEKALLLLEEMDEKGFPPCPAAYCSLINSLGKAKRYEAANELFQELKENCGSSSVRVY 480
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
AVMIKHFGKCGR ++A+ LFNEMKKL C PDVY YNAL++GMVRA M+D+A+SL R MEE
Sbjct: 481 AVMIKHFGKCGRFNEAMGLFNEMKKLGCIPDVYAYNALITGMVRADMMDEAFSLFRTMEE 540
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600
+GC PDINSHNIILNGLA++GGPKRAME+F KM+ S IKPDAVSYNT+LGCLSRAG+FEE
Sbjct: 541 NGCNPDINSHNIILNGLARTGGPKRAMEMFAKMKSSTIKPDAVSYNTVLGCLSRAGLFEE 600
Query: 601 AARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
A +LMK+MN+KGFEYD ITYSSILEAVGKVDEDRN
Sbjct: 601 ATKLMKEMNSKGFEYDLITYSSILEAVGKVDEDRN 635
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa] gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 997 bits (2577), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 478/609 (78%), Positives = 545/609 (89%), Gaps = 4/609 (0%)
Query: 33 MFQL-SGPIDEMRNFPV-SKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMRV 90
MF++ S DEM+N P + KF+R+D S R LDERFIRILKIFKWGPDAEKALEVLK++V
Sbjct: 1 MFKVPSSKDDEMQNLPTQNSKFSRRDPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKV 60
Query: 91 DHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQD 150
DHRLV +VL IDVEINVKIQFFKWAG+RRNFEH+ TTYM LIRCLD+ + G MWK IQ+
Sbjct: 61 DHRLVREVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQE 120
Query: 151 MVRS-TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209
MVRS TCV+GP+ LSE+V ILGKAKMVNKALS+FYQIKSRKCKPTA+TYNSMILMLMQEG
Sbjct: 121 MVRSPTCVIGPADLSEVVKILGKAKMVNKALSVFYQIKSRKCKPTASTYNSMILMLMQEG 180
Query: 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269
++EKIHELY+EMCNEG+CFPDT+TYS L+SAF KLGRD AIRLFDEMK NGL PTAKIY
Sbjct: 181 HHEKIHELYHEMCNEGDCFPDTMTYSVLVSAFVKLGRDDYAIRLFDEMKANGLHPTAKIY 240
Query: 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329
TTL++IYFK G+ EKALGLVQEMK KGCA TV+TYTELIKGLG++GRVEDAY +F+NMLK
Sbjct: 241 TTLLAIYFKSGD-EKALGLVQEMKDKGCAPTVFTYTELIKGLGKSGRVEDAYSVFLNMLK 299
Query: 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPAS 389
+GCKPD+VLINNLIN+ G+AGRLEDALKLF++M +L+C PNVVTYNTVIK+LFESKAPAS
Sbjct: 300 DGCKPDVVLINNLINIFGKAGRLEDALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPAS 359
Query: 390 EASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI 449
EA++WFEKMKANGV PS FTYSILIDGFCKTNRVEKA LLLEEM+EKGFPPCPAAYCSLI
Sbjct: 360 EAASWFEKMKANGVTPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLI 419
Query: 450 NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509
N GKAKRYEAANELFLELKE CG SSAR+YAVMIK+ GKCGR S+AVDLFNEMKK+ C
Sbjct: 420 NALGKAKRYEAANELFLELKENCGRSSARIYAVMIKNLGKCGRPSEAVDLFNEMKKIGCN 479
Query: 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEI 569
PDVY YNALMSG+VRAGMI++A+S LR MEE+GC PD+NSHNIILNGLA++G P++A E+
Sbjct: 480 PDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLNSHNIILNGLARTGRPEQATEM 539
Query: 570 FTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
F KM+ S IKPDAVSYNTILG LSR+GMFEEAA+LM++M ++GFEYD ITYSSILEAVGK
Sbjct: 540 FMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMREMGSRGFEYDHITYSSILEAVGK 599
Query: 630 VDEDRNPTL 638
VDED P
Sbjct: 600 VDEDDEPNF 608
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547408|ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16010-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2553), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/624 (74%), Positives = 548/624 (87%), Gaps = 2/624 (0%)
Query: 11 RCISTLSCLCQRIKQTENEIVHMFQL--SGPIDEMRNFPVSKKFARKDTSARKLDERFIR 68
R IST CQR+KQTENEI MF+L S + + N R+D +R LDERFIR
Sbjct: 2 RRISTFPPFCQRLKQTENEIAQMFRLPNSHEGNHLNNSMKGGHVLRRDPYSRTLDERFIR 61
Query: 69 ILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTY 128
ILKIFKWGPDAEKALEVLK++VD RLV ++L IDVE++VKIQFFKWAG+RRNFEH+STTY
Sbjct: 62 ILKIFKWGPDAEKALEVLKLKVDPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTY 121
Query: 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKS 188
MALIRCLDE RM G +WK+IQDMV+ +C M P+ LSEIV ILGKAKMVN+ALS+FYQ+K
Sbjct: 122 MALIRCLDEHRMFGEVWKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRALSVFYQVKG 181
Query: 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248
RKC+PTA+TYNS+ILMLMQEG++EK+HELYNEMC+E +CFPDTVTYSALISAF KL RD
Sbjct: 182 RKCRPTASTYNSIILMLMQEGHHEKVHELYNEMCSEVHCFPDTVTYSALISAFAKLNRDD 241
Query: 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELI 308
SAIRLFDEMKENGLQPTAKIYTTL+ IYFK+G+VE+ALGLV+EM+ + C LTV+TYTELI
Sbjct: 242 SAIRLFDEMKENGLQPTAKIYTTLMGIYFKVGKVEEALGLVKEMRARRCLLTVFTYTELI 301
Query: 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCK 368
+GLG++GRVEDAY + NMLK+GCKPD+VL+NNLIN+LGR+ L DA+KLF++M+ L C
Sbjct: 302 RGLGKSGRVEDAYMTYKNMLKDGCKPDVVLMNNLINILGRSNHLRDAIKLFDEMKLLNCA 361
Query: 369 PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHL 428
PNVVTYNT+IKSLFE+KAP SEAS+WFE+MK +G++PS FTYSILIDG+CKTNRVEKA L
Sbjct: 362 PNVVTYNTIIKSLFEAKAPLSEASSWFERMKKDGIVPSSFTYSILIDGYCKTNRVEKALL 421
Query: 429 LLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488
LLEEM+EKGFPPCPAAYCSLIN G AKRY+ ANELF ELKE CGCSSARVYAVMIKHFG
Sbjct: 422 LLEEMDEKGFPPCPAAYCSLINTLGVAKRYDVANELFQELKENCGCSSARVYAVMIKHFG 481
Query: 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN 548
KCGRL++A++LFNEMKKL C PDVY YNALM+GMVRA +D+A+SL R MEE+GC PDIN
Sbjct: 482 KCGRLNEAINLFNEMKKLGCTPDVYAYNALMTGMVRAERMDEAFSLFRTMEENGCTPDIN 541
Query: 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608
SHNIILNGLA++GGPK A+E+FTKM++S IKPD VS+NTILGCLSRAG+FEEAA+LM++M
Sbjct: 542 SHNIILNGLARTGGPKGALEMFTKMKNSTIKPDVVSFNTILGCLSRAGLFEEAAKLMQEM 601
Query: 609 NAKGFEYDQITYSSILEAVGKVDE 632
++KGF+YD ITYSSILEAVGKVD+
Sbjct: 602 SSKGFQYDLITYSSILEAVGKVDD 625
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297830178|ref|XP_002882971.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297328811|gb|EFH59230.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/632 (70%), Positives = 533/632 (84%), Gaps = 4/632 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDE 64
SI +KR +STL L QR KQTENEIV MF + P E P K K +RKD S R LDE
Sbjct: 8 SILAKRSVSTLPYLSQRFKQTENEIVQMFSI--PNHEESEKPQEKWKLSRKDPSVRMLDE 65
Query: 65 RFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHN 124
RFIRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125
Query: 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIF 183
+TYMALIRCL+E R+ G M+++IQ++VR+T V +GP VLSE+V LG+AKMV+KALS+F
Sbjct: 126 CSTYMALIRCLEEARLYGEMYRTIQEVVRNTYVSVGPVVLSELVKALGRAKMVSKALSVF 185
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
YQ K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ K
Sbjct: 186 YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK 245
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
LGR+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYT
Sbjct: 246 LGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYT 305
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
YTELIKGLG+AGRVE+AY L+ NML +G PD+V +NNL+N+LG+ GRLE+ +FN+M
Sbjct: 306 YTELIKGLGKAGRVEEAYDLYKNMLTDGLTPDVVFLNNLMNILGKVGRLEELTNVFNEMG 365
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+C P VV+YNTVIK+LFESKAP SE S+WF+KMKA+GV PS FTYSILIDG+CKTNRV
Sbjct: 366 TWRCTPTVVSYNTVIKALFESKAPVSEVSSWFDKMKADGVSPSEFTYSILIDGYCKTNRV 425
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
EKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVM
Sbjct: 426 EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
IKHFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGM+++A SLLR+MEE+GC
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMVNEANSLLRKMEENGC 545
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DINSHNIILNG A++G P+RA+E+F M+H IKPD V+YNT+LGC + AGMFEEAAR
Sbjct: 546 TADINSHNIILNGFARTGVPRRAIEMFETMKHCGIKPDGVTYNTLLGCFAHAGMFEEAAR 605
Query: 604 LMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
LM++M KGFEYD ITYSSIL+AVG +D +++
Sbjct: 606 LMREMKDKGFEYDAITYSSILDAVGNMDHEKD 637
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15233259|ref|NP_188222.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75274469|sp|Q9LW84.1|PP236_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16010 gi|9294448|dbj|BAB02667.1| unnamed protein product [Arabidopsis thaliana] gi|332642241|gb|AEE75762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 437/632 (69%), Positives = 532/632 (84%), Gaps = 4/632 (0%)
Query: 6 SIASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDE 64
S ++KR IS+L L QR KQTENEIV MF + P E P K K +RKD S R LDE
Sbjct: 8 SGSAKRSISSLPHLSQRFKQTENEIVQMFSV--PNHEESEKPQEKWKLSRKDPSVRMLDE 65
Query: 65 RFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHN 124
RFIRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+
Sbjct: 66 RFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHD 125
Query: 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIF 183
+TYM LIRCL+E R+ G M+++IQ++VR+T V + P+VLSE+V LG+AKMV+KALS+F
Sbjct: 126 CSTYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVF 185
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
YQ K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ K
Sbjct: 186 YQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEK 245
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
LGR+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYT
Sbjct: 246 LGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYT 305
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
YTELIKGLG+AGRV++AYG + +ML++G PD+V +NNL+N+LG+ GR+E+ +F++M
Sbjct: 306 YTELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMG 365
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+C P VV+YNTVIK+LFESKA SE S+WF+KMKA+ V PS FTYSILIDG+CKTNRV
Sbjct: 366 MWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRV 425
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
EKA LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVM
Sbjct: 426 EKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVM 485
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
IKHFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGMI++A SLLR+MEE+GC
Sbjct: 486 IKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGC 545
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DINSHNIILNG A++G P+RA+E+F ++HS IKPD V+YNT+LGC + AGMFEEAAR
Sbjct: 546 RADINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAAR 605
Query: 604 LMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
+M++M KGFEYD ITYSSIL+AVG VD +++
Sbjct: 606 MMREMKDKGFEYDAITYSSILDAVGNVDHEKD 637
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | ||||||
| TAIR|locus:2093472 | 642 | AT3G16010 [Arabidopsis thalian | 0.981 | 0.975 | 0.692 | 2.9e-238 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.793 | 0.824 | 0.295 | 1.5e-60 | |
| TAIR|locus:2077637 | 871 | AT3G06920 "AT3G06920" [Arabido | 0.728 | 0.533 | 0.310 | 2.4e-60 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.904 | 0.915 | 0.271 | 5.1e-58 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.786 | 0.788 | 0.293 | 9.6e-57 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.789 | 0.811 | 0.290 | 1.1e-55 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.811 | 0.687 | 0.280 | 2.9e-55 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.731 | 0.725 | 0.298 | 4.8e-55 | |
| TAIR|locus:2099458 | 659 | AT3G48810 "AT3G48810" [Arabido | 0.811 | 0.786 | 0.273 | 1.6e-54 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.783 | 0.807 | 0.280 | 2.1e-54 |
| TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2297 (813.6 bits), Expect = 2.9e-238, P = 2.9e-238
Identities = 436/630 (69%), Positives = 531/630 (84%)
Query: 8 ASKRCISTLSCLCQRIKQTENEIVHMFQLSGPIDEMRNFPVSK-KFARKDTSARKLDERF 66
++KR IS+L L QR KQTENEIV MF + P E P K K +RKD S R LDERF
Sbjct: 10 SAKRSISSLPHLSQRFKQTENEIVQMFSV--PNHEESEKPQEKWKLSRKDPSVRMLDERF 67
Query: 67 IRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNST 126
IRI+KIFKWGPDAEKALEVLK++VDHRLV +L IDVEINVKIQFFKWAG+RRNF+H+ +
Sbjct: 68 IRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCS 127
Query: 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIFYQ 185
TYM LIRCL+E R+ G M+++IQ++VR+T V + P+VLSE+V LG+AKMV+KALS+FYQ
Sbjct: 128 TYMTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQ 187
Query: 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245
K RKCKPT++TYNS+ILMLMQEG +EK+HE+Y EMCNEG+CFPDT+TYSALIS++ KLG
Sbjct: 188 AKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLG 247
Query: 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
R+ SAIRLFDEMK+N +QPT KIYTTL+ IYFK+G+VEKAL L +EMK GC+ TVYTYT
Sbjct: 248 RNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYT 307
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
ELIKGLG+AGRV++AYG + +ML++G PD+V +NNL+N+LG+ GR+E+ +F++M
Sbjct: 308 ELIKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMW 367
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+C P VV+YNTVIK+LFESKA SE S+WF+KMKA+ V PS FTYSILIDG+CKTNRVEK
Sbjct: 368 RCTPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEK 427
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
A LLLEEM+EKGFPPCPAAYCSLIN GKAKRYEAANELF ELKE G S+RVYAVMIK
Sbjct: 428 ALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIK 487
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
HFGKCG+LS+AVDLFNEMK PDVY YNALMSGMV+AGMI++A SLLR+MEE+GC
Sbjct: 488 HFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRA 547
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLM 605
DINSHNIILNG A++G P+RA+E+F ++HS IKPD V+YNT+LGC + AGMFEEAAR+M
Sbjct: 548 DINSHNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEAARMM 607
Query: 606 KDMNAKGFEYDQITYSSILEAVGKVDEDRN 635
++M KGFEYD ITYSSIL+AVG VD +++
Sbjct: 608 REMKDKGFEYDAITYSSILDAVGNVDHEKD 637
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 152/514 (29%), Positives = 258/514 (50%)
Query: 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV--LSEIVNILGKAKMVNKAL 180
HN TY +I CL + + M++ GPS+ L+ ++N +++A+
Sbjct: 98 HNLYTYNIMINCLCRRSQLSFALAILGKMMKLG--YGPSIVTLNSLLNGFCHGNRISEAV 155
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
++ Q+ +P T+ +++ L Q + L M +G C PD VTY A+I+
Sbjct: 156 ALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVING 214
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
K G A+ L ++M++ ++ IY+T++ K V+ AL L EM KG
Sbjct: 215 LCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPD 274
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
V+TY+ LI L GR DA L +ML+ P++V N+LI+ + G+L +A KLF+
Sbjct: 275 VFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFD 334
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M PN+VTYN++I F EA F M + LP TY+ LI+GFCK
Sbjct: 335 EMIQRSIDPNIVTYNSLING-FCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKA 393
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
+V L +M +G Y +LI+G+ +A + A +F ++ + Y
Sbjct: 394 KKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTY 453
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
++ K G+L A+ +F ++K + +PD+YTYN + GM +AG ++D + L +
Sbjct: 454 NTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSL 513
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600
G PD+ ++N +++G K G + A +F KM+ PD+ +YNT++ R G
Sbjct: 514 KGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAA 573
Query: 601 AARLMKDMNAKGFEYDQITYSSILEAV--GKVDE 632
+A L+K+M + F D TY + + + G++D+
Sbjct: 574 SAELIKEMRSCRFAGDASTYGLVTDMLHDGRLDK 607
|
|
| TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 146/470 (31%), Positives = 247/470 (52%)
Query: 160 PSVLSE--IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217
PSV++ I+ L K V++AL +F ++K + P +TYN +I ML + G + EL
Sbjct: 341 PSVIAYNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFEL 399
Query: 218 YNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277
+ M G FP+ T + ++ K + A +F+EM P + +L+
Sbjct: 400 RDSMQKAG-LFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLG 458
Query: 278 KLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV 337
K+G V+ A + ++M C YT LIK GR ED + ++ +M+ + C PD+
Sbjct: 459 KVGRVDDAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQ 518
Query: 338 LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK 397
L+N ++ + +AG E +F +++A + P+ +Y+ +I L ++ A+E F
Sbjct: 519 LLNTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGF-ANETYELFYS 577
Query: 398 MKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR 457
MK G + Y+I+IDGFCK +V KA+ LLEEM+ KGF P Y S+I+G K R
Sbjct: 578 MKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDR 637
Query: 458 YEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNA 517
+ A LF E K + +Y+ +I FGK GR+ +A + E+ + P++YT+N+
Sbjct: 638 LDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNS 697
Query: 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577
L+ +V+A I++A + M+E C P+ ++ I++NGL K +A + +MQ
Sbjct: 698 LLDALVKAEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQG 757
Query: 578 IKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627
+KP +SY T++ L++AG EA L A G D Y++++E +
Sbjct: 758 MKPSTISYTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGL 807
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
Identities = 160/590 (27%), Positives = 282/590 (47%)
Query: 45 NFPVSKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVE 104
++ +K +R S KLD+ ++ K P +E K+ + ++ DV
Sbjct: 45 SYDYREKLSRNGLSELKLDDAVALFGEMVKSRP-FPSIIEFSKLL---SAIAKMNKFDVV 100
Query: 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLS 164
I++ Q + HN TY LI C + + + M++ LS
Sbjct: 101 ISLGEQM-----QNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLS 155
Query: 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224
++N +K +++A+++ Q+ +P T+N++I L + L + M +
Sbjct: 156 SLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAK 215
Query: 225 GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284
G C PD VTY +++ K G A L ++M++ L+P IY T++ K ++
Sbjct: 216 G-CQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD 274
Query: 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344
AL L +EM+ KG V TY+ LI L GR DA L +M++ PD+ + LI+
Sbjct: 275 ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334
Query: 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404
+ G+L +A KL+++M P++VTY+++I F EA FE M +
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLING-FCMHDRLDEAKQMFEFMVSKHCF 393
Query: 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANEL 464
P TY+ LI GFCK RVE+ + EM ++G Y LI G +A + A E+
Sbjct: 394 PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEI 453
Query: 465 FLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR 524
F E+ + Y ++ K G+L A+ +F +++ + +P +YTYN ++ GM +
Sbjct: 454 FKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCK 513
Query: 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVS 584
AG ++D + L + G PD+ ++N +++G + G + A +F +M+ P++
Sbjct: 514 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGC 573
Query: 585 YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV--GKVDE 632
YNT++ R G E +A L+K+M + GF D T + + G++D+
Sbjct: 574 YNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNMLHDGRLDK 623
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 151/514 (29%), Positives = 260/514 (50%)
Query: 135 LDETRMIGVMWKSIQ-DMVRSTC----VMGPS----VLSEIVNILGKAKMVNKALSIFYQ 185
+D +R+ + K+ Q D+V + C + G + LS ++N + + + A S +
Sbjct: 89 IDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGK 148
Query: 186 IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245
I +P T++++I L EG + EL + M G+ PD +T + L++ G
Sbjct: 149 IIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHK-PDLITINTLVNGLCLSG 207
Query: 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
++ A+ L D+M E G QP A Y ++++ K G+ A+ L+++M+ + L Y+
Sbjct: 208 KEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYS 267
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
+I GL + G +++A+ LF M +G +I+ N LI AGR +D KL M
Sbjct: 268 IIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKR 327
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ PNVVT++ +I S F + EA ++M G+ P TY+ LIDGFCK N ++K
Sbjct: 328 KINPNVVTFSVLIDS-FVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
A+ +++ M KG P + LINGY KA R + ELF ++ + Y +I+
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
F + G+L+ A +LF EM + P++ TY L+ G+ G + A + ++E+
Sbjct: 447 GFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMEL 506
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLM 605
DI +NII++G+ + A ++F + +KP +YN ++G L + G EA L
Sbjct: 507 DIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLF 566
Query: 606 KDMNAKGFEYDQITYSSILEA-VGKVDEDRNPTL 638
+ M G D TY+ ++ A +G D ++ L
Sbjct: 567 RKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKL 600
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| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 150/516 (29%), Positives = 259/516 (50%)
Query: 133 RCLDETRMIGVMWKSIQ-DMVRSTC----VMGPS----VLSEIVNILGKAKMVNKALSIF 183
R +D +R+ V+ ++ Q D+V C + G + LS ++N + + ++ A S
Sbjct: 71 RLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAM 130
Query: 184 YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
+I +P T++++I L EG + EL + M G+ P +T +AL++
Sbjct: 131 GKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHK-PTLITLNALVNGLCL 189
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303
G+ A+ L D M E G QP Y ++ + K G+ A+ L+++M+ + L
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
Y+ +I GL + G +++A+ LF M +G K DI++ LI AGR +D KL M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423
+ P+VV ++ +I F + EA ++M G+ P TY+ LIDGFCK N++
Sbjct: 310 KRKITPDVVAFSALI-DCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQL 368
Query: 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVM 483
+KA+ +L+ M KG P + LINGY KA + ELF ++ + Y +
Sbjct: 369 DKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTL 428
Query: 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
I+ F + G+L A +LF EM R +PD+ +Y L+ G+ G + A + ++E+
Sbjct: 429 IQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKM 488
Query: 544 VPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
DI +NII++G+ + A ++F + +KPD +YN ++G L + G EA
Sbjct: 489 ELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADL 548
Query: 604 LMKDMNAKGFEYDQITYSSILEA-VGKVDEDRNPTL 638
L + M G + TY+ ++ A +G+ D ++ L
Sbjct: 549 LFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 147/524 (28%), Positives = 259/524 (49%)
Query: 109 IQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVN 168
++ F A ++ NF Y ++ L + M K ++DM S C MG S ++
Sbjct: 67 LRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIE 126
Query: 169 ILGKAKMVNKALSIF-YQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227
+ ++ ++ LS+ + I KP + YN M+ +L+ +G K+ E+ + +
Sbjct: 127 SYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV-DGNSLKLVEISHAKMSVWGI 185
Query: 228 FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287
PD T++ LI A + + AI + ++M GL P K +TT++ Y + G+++ AL
Sbjct: 186 KPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALR 245
Query: 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML-KEGCKPDIVLINNLINVL 346
+ ++M GC+ + + ++ G + GRVEDA M ++G PD N L+N L
Sbjct: 246 IREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGL 305
Query: 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS 406
+AG ++ A+++ + M P+V TYN+VI L + EA ++M P+
Sbjct: 306 CKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKL-GEVKEAVEVLDQMITRDCSPN 364
Query: 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466
TY+ LI CK N+VE+A L + KG P + SLI G + + A ELF
Sbjct: 365 TVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFE 424
Query: 467 ELKEYCGCSSAR-VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA 525
E++ GC Y ++I G+L +A+++ +M+ C V TYN L+ G +A
Sbjct: 425 EMRSK-GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483
Query: 526 GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY 585
+A + ME G + ++N +++GL KS + A ++ +M KPD +Y
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543
Query: 586 NTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
N++L R G ++AA +++ M + G E D +TY +++ + K
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCK 587
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| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
Identities = 141/472 (29%), Positives = 241/472 (51%)
Query: 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222
LS ++N + + ++ A S +I +P +N+++ L E + EL + M
Sbjct: 126 LSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMV 185
Query: 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282
G+ P +T + L++ G+ A+ L D M E G QP Y ++++ K G+
Sbjct: 186 EMGHK-PTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQT 244
Query: 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL 342
A+ L+++M+ + L Y+ +I GL + G +++A+ LF M +G K DI+ N L
Sbjct: 245 ALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTL 304
Query: 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402
I AGR +D KL M + PNVVT++ +I S F + EA ++M G
Sbjct: 305 IGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDS-FVKEGKLREADQLLKEMMQRG 363
Query: 403 VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAAN 462
+ P+ TY+ LIDGFCK NR+E+A +++ M KG P + LINGY KA R +
Sbjct: 364 IAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGL 423
Query: 463 ELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522
ELF E+ ++ Y +++ F + G+L A LF EM R +PD+ +Y L+ G+
Sbjct: 424 ELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483
Query: 523 VRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDA 582
G ++ A + ++E+ DI + II++G+ + A ++F + +K DA
Sbjct: 484 CDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDA 543
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA-VGKVDED 633
+YN ++ L R +A L + M +G D++TY+ ++ A +G D+D
Sbjct: 544 RAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLG--DDD 593
|
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| TAIR|locus:2099458 AT3G48810 "AT3G48810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 144/527 (27%), Positives = 254/527 (48%)
Query: 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLS 164
+ + + FFK F+H T+ +IR L + + +Q M +
Sbjct: 56 VPLALHFFKSIANSNLFKHTPLTFEVMIRKLAMDGQVDSVQYLLQQMKLQGFHCSEDLFI 115
Query: 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224
++++ + + +A+ +FY+IK C P+ YN ++ L+ E + I+ +Y +M +
Sbjct: 116 SVISVYRQVGLAERAVEMFYRIKEFGCDPSVKIYNHVLDTLLGENRIQMIYMVYRDMKRD 175
Query: 225 GNCF-PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283
G F P+ TY+ L+ A K + A +L EM G P A YTT++S ++G V+
Sbjct: 176 G--FEPNVFTYNVLLKALCKNNKVDGAKKLLVEMSNKGCCPDAVSYTTVISSMCEVGLVK 233
Query: 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343
+ L + + V Y LI GL + + A+ L M+++G P+++ + LI
Sbjct: 234 EGRELAERFEP-----VVSVYNALINGLCKEHDYKGAFELMREMVEKGISPNVISYSTLI 288
Query: 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGV 403
NVL +G++E A +M C PN+ T ++++K F W + ++ G+
Sbjct: 289 NVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSSLVKGCFLRGTTFDALDLWNQMIRGFGL 348
Query: 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANE 463
P+ Y+ L+ GFC + KA + MEE G P Y SLING+ K + A
Sbjct: 349 QPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGAVY 408
Query: 464 LFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523
++ ++ C + VY M++ + + +A L M K C P V T+NA + G+
Sbjct: 409 IWNKMLTSGCCPNVVVYTNMVEALCRHSKFKEAESLIEIMSKENCAPSVPTFNAFIKGLC 468
Query: 524 RAGMIDDAYSLLRRMEEDG-CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDA 582
AG +D A + R+ME+ C P+I ++N +L+GLAK+ + A + ++ ++ +
Sbjct: 469 DAGRLDWAEKVFRQMEQQHRCPPNIVTYNELLDGLAKANRIEEAYGLTREIFMRGVEWSS 528
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
+YNT+L AG+ A +L+ M G D+IT + I+ A K
Sbjct: 529 STYNTLLHGSCNAGLPGIALQLVGKMMVDGKSPDEITMNMIILAYCK 575
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 142/506 (28%), Positives = 247/506 (48%)
Query: 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181
EH+ T +I C + + + + + S +VN V++A++
Sbjct: 102 EHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVA 161
Query: 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISA 240
+ ++ K +P T +++I L +G + L + M G F PD VTY +++
Sbjct: 162 LVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYG--FQPDEVTYGPVLNR 219
Query: 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
K G A+ LF +M+E ++ + Y+ ++ K G + AL L EM+ KG
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
V TY+ LI GL G+ +D + M+ PD+V + LI+V + G+L +A +L+N
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYN 339
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+M P+ +TYN++I + EA+ F+ M + G P TYSILI+ +CK
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENC-LHEANQMFDLMVSKGCEPDIVTYSILINSYCKA 398
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
RV+ L E+ KG P Y +L+ G+ ++ + AA ELF E+ S Y
Sbjct: 399 KRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
+++ G L+ A+++F +M+K R + YN ++ GM A +DDA+SL + +
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGC-LSRAGMFE 599
G PD+ ++N+++ GL K G A +F KM+ PD +YN ++ L +G+
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLIS 578
Query: 600 EAARLMKDMNAKGFEYDQITYSSILE 625
+ L+++M GF D T +++
Sbjct: 579 -SVELIEEMKVCGFSADSSTIKMVID 603
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LW84 | PP236_ARATH | No assigned EC number | 0.6914 | 0.9843 | 0.9781 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00034422001 | SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (638 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 638 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-35 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-26 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-23 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-22 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-21 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-14 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-09 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-35
Identities = 99/408 (24%), Positives = 192/408 (47%), Gaps = 25/408 (6%)
Query: 215 HELYNEMCNEGNCFPDTVTYSALI-----SAFGKL------GRDIS-AIRLFDEMKENGL 262
H + + C + + ++ LI S F L +DI A+R+ ++E GL
Sbjct: 409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468
Query: 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322
+ K+YTTL+S K G+V+ + EM G V+T+ LI G RAG+V A+G
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM--EALQCKPNVVTYNTVIKS 380
+ M + KPD V+ N LI+ G++G ++ A + +M E P+ +T ++K+
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
Query: 381 LFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440
+ A ++ + + +P Y+I ++ + + A + ++M++KG P
Sbjct: 589 CANA-GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP 647
Query: 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD---AV 497
+ +L++ G A + A E+ + ++ Y+ ++ G C + A+
Sbjct: 648 DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM---GACSNAKNWKKAL 704
Query: 498 DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGL 557
+L+ ++K ++ +P V T NAL++ + + A +L M+ G P+ +++I+L
Sbjct: 705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
Query: 558 AKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILG-CLSRAGMFEEAARL 604
+ +++ ++ + IKP+ V I G CL R FE+A L
Sbjct: 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR---FEKACAL 809
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 6e-26
Identities = 70/280 (25%), Positives = 133/280 (47%), Gaps = 2/280 (0%)
Query: 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-P 229
+A V KA + ++S+ KP +N++I Q G ++ ++ EM E + P
Sbjct: 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP 577
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289
D +T AL+ A G+ A ++ + E ++ T ++YT V+ + G+ + AL +
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIY 637
Query: 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA 349
+MK KG ++ L+ G AG ++ A+ + + K+G K V ++L+ A
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA 697
Query: 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT 409
+ AL+L+ +++++ +P V T N +I +L E +A +MK G+ P+ T
Sbjct: 698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ-LPKALEVLSEMKRLGLCPNTIT 756
Query: 410 YSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI 449
YSIL+ + + + LL + +E G P +
Sbjct: 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-23
Identities = 101/409 (24%), Positives = 166/409 (40%), Gaps = 48/409 (11%)
Query: 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKI--YTTLVSIYFKLGEVEKALGLVQEM 292
+ALI+ + K G +SA +FD M P + ++S YF+ GE + L L M
Sbjct: 226 NALITMYVKCGDVVSARLVFDRM------PRRDCISWNAMISGYFENGECLEGLELFFTM 279
Query: 293 KGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352
+ + T T +I G + ++K G D+ + N+LI + G
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412
+A K+F++ME K + V++ +I S +E +A + M+ + V P T +
Sbjct: 340 GEAEKVFSRME---TK-DAVSWTAMI-SGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394
Query: 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYC 472
++ ++ L E E KG +LI Y K K + A E+F + E
Sbjct: 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD 454
Query: 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY----------NALMSG- 521
S + +I R +A+ F +M L KP+ T ALM G
Sbjct: 455 VIS----WTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGK 509
Query: 522 -----MVRAGM---------IDDAYSLLRRMEE-----DGCVPDINSHNIILNGLAKSGG 562
++R G+ + D Y RM + D+ S NI+L G G
Sbjct: 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569
Query: 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611
A+E+F +M S + PD V++ ++L SR+GM + M K
Sbjct: 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 2e-22
Identities = 77/312 (24%), Positives = 138/312 (44%), Gaps = 22/312 (7%)
Query: 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT 231
K+ V+ +F+++ + + +T+ ++I + G K Y M ++ N PD
Sbjct: 484 KSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK-NVKPDR 542
Query: 232 VTYSALISAFGKLGRDISAIRLFD---EMKENG--LQPTAKIYTTLVSIYFKLGEVEKAL 286
V ++ALISA G+ G + R FD EMK + P L+ G+V++A
Sbjct: 543 VVFNALISACGQSG---AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346
+ Q + T YT + + G + A ++ +M K+G KPD V + L++V
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659
Query: 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW------FEKMKA 400
G AG L+ A ++ K V+Y++++ + S A W +E +K+
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA-------CSNAKNWKKALELYEDIKS 712
Query: 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA 460
+ P+ T + LI C+ N++ KA +L EM+ G P Y L+ + +
Sbjct: 713 IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772
Query: 461 ANELFLELKEYC 472
+L + KE
Sbjct: 773 GLDLLSQAKEDG 784
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-21
Identities = 91/412 (22%), Positives = 169/412 (41%), Gaps = 86/412 (20%)
Query: 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEM 292
TY AL+ A L ++ ++ +G +P + ++ ++ K G + A L EM
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184
Query: 293 KGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--CKP---------------- 334
+ + ++ +I GL AG +A+ LF M ++G +P
Sbjct: 185 PER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240
Query: 335 -----------------DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377
D + LI++ + G +EDA +F+ M + V +N++
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSM 296
Query: 378 IKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437
+ + + EA + +M+ +GV FT+SI+I F + +E A
Sbjct: 297 LAG-YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK---------- 345
Query: 438 FPPCPAAYCSLI-NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496
A+ LI G+ AN ++L Y K GR+ DA
Sbjct: 346 -----QAHAGLIRTGFPLDI---VANTALVDL--YS----------------KWGRMEDA 379
Query: 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNG 556
++F+ M + ++ ++NAL++G G A + RM +G P+ + +L+
Sbjct: 380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 557 LAKSGGPKRAMEIFTKM-QHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607
SG ++ EIF M ++ IKP A+ Y ++ L R G+ +EA +++
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-19
Identities = 118/557 (21%), Positives = 215/557 (38%), Gaps = 131/557 (23%)
Query: 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221
V++ ++ + K V A +F ++ R C ++N+MI GY+E N
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMI-----SGYFE------NGE 268
Query: 222 CNEG----------NCFPDTVTYSALISAFGKLGRDISAIRLFDEMK----ENGLQPTAK 267
C EG + PD +T +++ISA LG RL EM + G
Sbjct: 269 CLEGLELFFTMRELSVDPDLMTITSVISACELLGD----ERLGREMHGYVVKTGFAVDVS 324
Query: 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327
+ +L+ +Y LG +A + M+ K ++T +I G + G + A + M
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 328 LKEGCKPD-----------------------------------IVLINNLINVLGRAGRL 352
++ PD +V+ N LI + + +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 353 EDALKLFNKMEALQCKPNVVTYNTVIKSL-FESKAPASEASAWFEKMKANGVLPSPFTYS 411
+ AL++F+ + + +V+++ ++I L ++ EA +F +M + P+ T
Sbjct: 441 DKALEVFHNIP----EKDVISWTSIIAGLRLNNRC--FEALIFFRQMLLT-LKPNSVTLI 493
Query: 412 ILIDGFCKTNRVE-----KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466
+ + + AH+L + GF P +L++ Y + R A
Sbjct: 494 AALSACARIGALMCGKEIHAHVLRTGIGFDGFLPN-----ALLDLYVRCGRMNYA----- 543
Query: 467 ELKEYCGCSSARV-YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA 525
++ V + +++ + G+ S AV+LFN M + PD T+ +L+ R+
Sbjct: 544 -WNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602
Query: 526 GMIDDAYSLLRRMEED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM----------- 573
GM+ MEE P++ + +++ L ++G A KM
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662
Query: 574 ------------------QHS-EIKPDAVSYNTILGCL-SRAGMFEEAARLMKDMNAKGF 613
QH E+ P++V Y +L L + AG ++E AR+ K M G
Sbjct: 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722
Query: 614 EYDQITYSSILEAVGKV 630
D S +E GKV
Sbjct: 723 TVD--PGCSWVEVKGKV 737
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-14
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK 559
PDV TYN L+ G + G +++A L M++ G P++ +++I+++GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 2e-14
Identities = 68/298 (22%), Positives = 131/298 (43%), Gaps = 15/298 (5%)
Query: 343 INVLGRAGRLEDALKLFNKMEA-LQCKPNVVTYNTVIKSLFESKAP-ASEASAWFEKMKA 400
I L GR +AL+LF +EA TY+ ++++ K+ +A W +++
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWH--VES 151
Query: 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEA 460
+G P + + ++ K + A L +EM E+ A++ ++I G A Y
Sbjct: 152 SGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYRE 207
Query: 461 ANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMS 520
A LF E+ E + R + VM++ G L + K D + AL+
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALID 267
Query: 521 GMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP 580
+ G I+DA + M E V + N +L G A G + A+ ++ +M+ S +
Sbjct: 268 MYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 581 DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV---GKVDEDRN 635
D +++ ++ SR + E A + + GF D + +++++ G++++ RN
Sbjct: 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 3e-14
Identities = 91/446 (20%), Positives = 175/446 (39%), Gaps = 86/446 (19%)
Query: 110 QFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNI 169
+ F+ F ++TY AL+ + I + + S +++ ++ +
Sbjct: 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167
Query: 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG-NCF 228
K M+ A +F ++ R ++ ++I L+ G Y + L+ EM +G +
Sbjct: 168 HVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE 223
Query: 229 P---------------------------------DTVTYSALISAFGKLGRDISAIRLFD 255
P DT ALI + K G A +FD
Sbjct: 224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283
Query: 256 EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315
M E T + ++++ Y G E+AL L EM+ G ++ +T++ +I+ R
Sbjct: 284 GMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339
Query: 316 RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN 375
+E A +++ G DIV L+++ + GR+EDA +F++M + N++++N
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWN 395
Query: 376 TVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEM-E 434
+I + + ++A FE+M A GV P+ T+ ++ + E+ + + M E
Sbjct: 396 ALIAG-YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454
Query: 435 EKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLS 494
P A YA MI+ G+ G L
Sbjct: 455 NHRIKP-----------------------------------RAMHYACMIELLGREGLLD 479
Query: 495 DAVDLFNEMKKLRCKPDVYTYNALMS 520
+A + +++ KP V + AL++
Sbjct: 480 EAYAM---IRRAPFKPTVNMWAALLT 502
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.1 bits (160), Expect = 1e-13
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 369 PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419
P+VVTYNT+I + EA F +MK G+ P+ +TYSILIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKV-EEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 2e-13
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 334 PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL 381
PD+V N LI+ + G++E+ALKLFN+M+ KPNV TY+ +I L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 5e-13
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR 524
Y +I + K G++ +A+ LFNEMKK KP+VYTY+ L+ G+ +
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 83/396 (20%), Positives = 162/396 (40%), Gaps = 18/396 (4%)
Query: 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294
+A++S F + G + A +F +M E L + LV Y K G ++AL L M
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFS----WNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 295 KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354
G VYT+ +++ G + + ++++ G + D+ ++N LI + + G +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 355 ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414
A +F++M C +++N +I FE+ E F M+ V P T + +I
Sbjct: 241 ARLVFDRMPRRDC----ISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVI 295
Query: 415 DGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474
+ + + GF + SLI Y + A ++F ++
Sbjct: 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----T 351
Query: 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534
A + MI + K G A++ + M++ PD T +++S G +D L
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL 411
Query: 535 LRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR 594
E G + + N ++ +K +A+E+F + + D +S+ +I+ L
Sbjct: 412 HELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRL 467
Query: 595 AGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630
EA + M + + +T + L A ++
Sbjct: 468 NNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARI 502
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-12
Identities = 87/399 (21%), Positives = 160/399 (40%), Gaps = 51/399 (12%)
Query: 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIK 309
A++L + M+E + Y L F+L E ++A E + C+ + ++ L
Sbjct: 70 ALKLLESMQELRVPVDEDAYVAL----FRLCEWKRA----VEEGSRVCSRALSSHPSLGV 121
Query: 310 GLGRA--------GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361
LG A G + A+ +F M + D+ N L+ +AG ++AL L+++
Sbjct: 122 RLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 362 MEALQCKPNVVTYNTVIKSL--FESKAPASEASAWFEKMKANGVLPSPFTYSI-----LI 414
M +P+V T+ V+++ A E A V+ F + LI
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA--------HVVRFGFELDVDVVNALI 229
Query: 415 DGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474
+ K V A L+ + M + ++ ++I+GY + ELF ++E
Sbjct: 230 TMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENGECLEGLELFFTMREL--- 282
Query: 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP----DVYTYNALMSGMVRAGMIDD 530
S + C L D L EM K DV N+L+ + G +
Sbjct: 283 SVDPDLMTITSVISACELLGD-ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGE 341
Query: 531 AYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILG 590
A + RME D S +++G K+G P +A+E + M+ + PD ++ ++L
Sbjct: 342 AEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 591 CLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629
+ G + +L + KG + ++++E K
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-11
Identities = 50/186 (26%), Positives = 81/186 (43%), Gaps = 11/186 (5%)
Query: 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189
AL+ + ++ +QD + +G S ++ AK KAL ++ IKS
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713
Query: 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249
K +PT +T N++I L + K E+ +EM G C P+T+TYS L+ A +
Sbjct: 714 KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSILLVASERKDDADV 772
Query: 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV----------QEMKGKGCAL 299
+ L + KE+G++P + + + + E ALG E K AL
Sbjct: 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832
Query: 300 TVYTYT 305
VY T
Sbjct: 833 MVYRET 838
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 8e-11
Identities = 22/50 (44%), Positives = 30/50 (60%)
Query: 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454
P TY+ LIDG+CK +VE+A L EM+++G P Y LI+G K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243
P TYN++I ++G E+ +L+NEM G P+ TYS LI K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 24/50 (48%), Positives = 30/50 (60%)
Query: 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313
P Y TL+ Y K G+VE+AL L EMK +G VYTY+ LI GL +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.7 bits (133), Expect = 5e-10
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274
PD VTY+ LI + K G+ A++LF+EMK+ G++P Y+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 2e-09
Identities = 20/48 (41%), Positives = 28/48 (58%)
Query: 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348
V TY LI G + G+VE+A LF M K G KP++ + LI+ L +
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-09
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA 626
PD V+YNT++ + G EEA +L +M +G + + TYS +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 4e-09
Identities = 14/50 (28%), Positives = 32/50 (64%)
Query: 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR 594
PD+ ++N +++G K G + A+++F +M+ IKP+ +Y+ ++ L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 4e-09
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434
G+ P TY+ LIDG C+ RV++A LL+EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 8e-09
Identities = 59/304 (19%), Positives = 114/304 (37%), Gaps = 49/304 (16%)
Query: 150 DMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209
DM + S +V++ G A ++KA I + + K
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK----------------- 681
Query: 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269
TV+YS+L+ A A+ L++++K L+PT
Sbjct: 682 -------------------LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722
Query: 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329
L++ + ++ KAL ++ EMK G TY+ L+ R + L +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782
Query: 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPAS 389
+G KP++V+ + + R R E A L VV++++ + E+K +
Sbjct: 783 DGIKPNLVMCRCITGLCLR--RFEKACALGEP---------VVSFDSGRPQI-ENKWTSW 830
Query: 390 EASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI 449
+ E + A G LP+ S ++ + + L+E + + +L+
Sbjct: 831 ALMVYRETISA-GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889
Query: 450 NGYG 453
+G+G
Sbjct: 890 DGFG 893
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.0 bits (121), Expect = 2e-08
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 508 CKPDVYTYNALMSGMVRAGMIDDAYSLLRRME 539
KPDV TYN L+ G+ RAG +D+A LL ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 4e-08
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547
TYN L+ G+ +AG +++A L + M+E G PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258
PD VTY+ LI + GR A+ L DEM+
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 8e-07
Identities = 17/33 (51%), Positives = 26/33 (78%)
Query: 331 GCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363
G KPD+V N LI+ L RAGR+++A++L ++ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440
TY+ LIDG CK RVE+A L +EM+E+G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 55/254 (21%), Positives = 97/254 (38%), Gaps = 43/254 (16%)
Query: 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS 475
C ++E+A LLE M+E P AY +L + E + +
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535
R+ M+ F + G L A +F +M + D++++N L+ G +AG D+A L
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLY 175
Query: 536 RRMEEDGCVPD----------------------INSHNI---------ILNGL----AKS 560
RM G PD +++H + ++N L K
Sbjct: 176 HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235
Query: 561 GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITY 620
G A +F +M + D +S+N ++ G E L M + D +T
Sbjct: 236 GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291
Query: 621 SSILEAVGKVDEDR 634
+S++ A + ++R
Sbjct: 292 TSVISACELLGDER 305
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 18/35 (51%), Positives = 23/35 (65%)
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336
TY LI GL +AGRVE+A LF M + G +PD+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 295 KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327
KG V TY LI GL RAGRV++A L M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGF 438
TY+ LI G+CK ++E+A L +EM+EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGC 543
TYN+L+SG +AG +++A L + M+E G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 478 RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV 512
Y +I K GR+ +A++LF EMK+ +PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 2e-05
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
+ TYNAL+ + +AG D A ++L M+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616
V+YNT++ L +AG EEA L K+M +G E D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 232 VTYSALISAFGKLGRDISAIRLFDEMKENGL 262
VTY++LIS + K G+ A+ LF EMKE G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 3e-05
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440
TY+ L+ K + A +LEEM+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.0 bits (107), Expect = 3e-05
Identities = 50/240 (20%), Positives = 87/240 (36%), Gaps = 5/240 (2%)
Query: 161 SVLSEIVNILGKAKMVNKALSIFYQ-IKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN 219
++L + +L + +AL + + ++ A + L L++ G E+ EL
Sbjct: 24 ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83
Query: 220 EMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279
+ L LG+ A+ L ++ P + ++L
Sbjct: 84 KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143
Query: 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKG--LGRAGRVEDAYGLFMNMLKEGCKPDIV 337
G+ E+AL L ++ L L G L GR E+A L LK D
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAE 203
Query: 338 LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK 397
+ NL + + G+ E+AL+ + K AL+ P+ + L EA EK
Sbjct: 204 ALLNLGLLYLKLGKYEEALEYYEK--ALELDPDNAEALYNLALLLLELGRYEEALEALEK 261
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 232 VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA 266
VTY+ LI K GR A+ LF EMKE G++P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.3 bits (93), Expect = 2e-04
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202
+++ K V +AL +F ++K R KP TY+ +I
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371
N LI+ L +AGR+E+AL+LF +M+ +P+V
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 578 IKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608
+KPD V+YNT++ L RAG +EA L+ +M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297
Y +L+S Y K G++E+AL L +EMK KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 302 YTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332
TY LI G +AG++E+A LF M ++G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.1 bits (97), Expect = 6e-04
Identities = 63/283 (22%), Positives = 108/283 (38%), Gaps = 8/283 (2%)
Query: 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK-GCALTVY 302
L + A+ + E L + +++ LGE+ +AL L++E +
Sbjct: 1 LKDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAG 60
Query: 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNK 361
L L + GR+E+A L L+ P++ NL +L G+ E+AL+L K
Sbjct: 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VLPSPFTYSILIDGFCK 419
AL P++ + +L+E EA +EK + L
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYE-EALELYEKALELDPELNELAEALLALGALLEA 179
Query: 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479
R E+A LLE+ + A +L Y K +YE A E + + E +A
Sbjct: 180 LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNAEA 238
Query: 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522
+ + GR +A++ K L PD+Y + +
Sbjct: 239 LYNLALLLLELGRYEEALEALE--KALELDPDLYNLGLALLLL 279
|
Length = 291 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 8e-04
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574
G PD+ ++N +++GL ++G A+E+ +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 9e-04
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613
V+YN+++ +AG EEA L K+M KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
Y TL+ K G VE+AL L +EMK +G V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508
Y +I + K G+L +A++LF EMK+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQC 367
N+LI+ +AG+LE+AL+LF +M+
Sbjct: 4 NSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP 510
Y ++ K G A+ + EMK KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.77 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.71 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.61 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.6 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.59 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.58 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.57 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.53 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.49 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.48 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.35 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.32 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.25 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.22 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.21 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.19 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.18 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.16 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.15 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.04 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.03 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.03 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.03 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.99 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.95 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.93 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.92 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.87 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.84 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.71 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.69 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.69 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.69 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.67 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.67 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.64 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.63 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.62 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.6 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.57 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.57 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.57 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.47 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.4 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.36 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.28 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.23 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.16 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.07 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.05 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.05 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.85 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.83 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.82 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.82 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.8 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.79 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.78 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.77 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.74 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.73 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.68 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.65 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.63 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.63 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.63 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.61 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.58 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.53 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.49 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.48 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.47 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.45 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.44 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.39 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.35 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.35 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.34 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.33 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.3 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.29 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.27 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.26 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.23 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.18 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.18 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.17 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.02 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.93 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.87 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.85 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.81 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.78 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.77 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.72 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.61 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.61 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.61 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.55 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.51 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.51 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.49 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.4 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.39 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.32 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.28 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.24 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.16 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.1 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.08 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.05 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.04 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.99 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.99 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.94 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.92 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.81 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.71 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.66 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.66 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.64 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.59 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.53 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.51 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.28 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.27 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.23 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.99 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.98 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.95 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.94 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.91 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.86 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.84 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.72 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.7 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.67 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.61 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.6 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.51 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.48 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.38 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.25 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.24 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.13 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.77 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.77 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.14 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 93.12 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.91 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 92.83 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 92.7 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 92.68 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.68 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.61 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.57 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 92.54 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.51 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.24 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.22 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.99 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.9 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.39 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.14 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.88 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.75 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 90.48 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.37 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 90.19 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.74 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.34 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 89.0 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.9 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.87 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.86 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.83 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 88.52 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.43 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.83 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 87.6 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.51 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.49 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 87.27 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.2 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.1 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.8 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.43 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.18 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.0 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 85.87 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.82 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.61 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.51 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.93 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.67 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 84.39 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.28 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 83.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 83.32 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 82.23 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.14 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.57 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 81.15 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.89 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.89 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.69 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 80.44 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-70 Score=589.27 Aligned_cols=502 Identities=21% Similarity=0.315 Sum_probs=447.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
++...|..++..|++.|++++|+++|++|.+.++ +++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4677888888888899999999999999988875 46677788888899999999999999988874 789999999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
+.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~-pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLK-ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999888765 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
+++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999976 578899999999999999999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 439 (638)
+.|.+.|+.|+..+|+.+|.+|++.|+.+++ ..+|+.|...|+.||..+|+.++++|++.|++++|.+++++|.+.|+.
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deA-l~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA-LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999988777 888899999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006624 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALM 519 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 519 (638)
|+..+|+.+|.+|++.|++++|.++|++|.+.+..||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999988889999999999999999999999999999999989999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHhhhC
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----S-------------------GGPKRAMEIFTKMQHS 576 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~ 576 (638)
.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+ + +..++|..+|++|++.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999988865432 1 1246788999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhcc
Q 006624 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 630 (638)
|+.||..||+.++.++++.+..+.+..+++.|...+..|+..+|+++++++++.
T Consensus 842 Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~ 895 (1060)
T PLN03218 842 GTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY 895 (1060)
T ss_pred CCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC
Confidence 999999999999988888888999999998888888888899999999988643
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-70 Score=586.18 Aligned_cols=509 Identities=17% Similarity=0.249 Sum_probs=484.4
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.+++..|+++|++..+..-.+++..+++.++..|.+.|.+++|+.+++.|.. |+..+|+.++.+|++.|++++|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3778999999998876665678889999999999999999999999998854 899999999999999999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|.. ||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~G 537 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999998865 999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG--KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|
T Consensus 538 v~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~ty 617 (1060)
T PLN03218 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHH
Confidence 999999999999999999999999999999986 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+..++ ..+++.|.+.|+.||..+|+.++.+|++
T Consensus 618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA-~~l~~eM~k~G~~pd~~tynsLI~ay~k 696 (1060)
T PLN03218 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA-FEILQDARKQGIKLGTVSYSSLMGACSN 696 (1060)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998888 9999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++
T Consensus 697 ~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l 776 (1060)
T PLN03218 697 AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 500 FNEMKKLRCKPDVYTYNALMSGMVR----A-------------------GMIDDAYSLLRRMEEDGCVPDINSHNIILNG 556 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 556 (638)
|++|.+.|+.||..+|+.++..|.+ . +..+.|..+|++|++.|+.||..||+.++.+
T Consensus 777 ~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~c 856 (1060)
T PLN03218 777 LSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGC 856 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999866432 1 1246799999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 557 LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 557 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
+++.+..+.+..+++.|...+..|+..+|+++++++++. .++|..++++|...|+.|+..
T Consensus 857 l~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 857 LQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 999999999999999998888899999999999998543 468999999999999999985
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-69 Score=590.03 Aligned_cols=509 Identities=19% Similarity=0.274 Sum_probs=408.9
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
+.++.|+.+|+... ..|+.||..+|+.+++++++.+++..+.+++..|.+.|..|+..+++.++.+|++.|++++|.++
T Consensus 166 g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~l 244 (857)
T PLN03077 166 GYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244 (857)
T ss_pred CCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHH
Confidence 33445555554332 23455555555555555555555555555555555555555566667777777777777777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGL 262 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 262 (638)
|++|.+ ||..+||++|.+|++.|++++|+++|++|...|.. ||..||+.++.+|++.|+.+.|.+++..|.+.|+
T Consensus 245 f~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~ 319 (857)
T PLN03077 245 FDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVD-PDLMTITSVISACELLGDERLGREMHGYVVKTGF 319 (857)
T ss_pred HhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Confidence 777764 46777777777777777777777777777776654 7777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006624 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL 342 (638)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 342 (638)
.||..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 320 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred ccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 77777788888888888888888888777753 47777888888888888888888888888777778888888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 343 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (638)
+.+|++.|+++.|.++++.+.+.|+.|+..+|+.++..|++.|+.+++ ..+|+.|.+ +|..+|+.++.+|++.|+
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A-~~vf~~m~~----~d~vs~~~mi~~~~~~g~ 470 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA-LEVFHNIPE----KDVISWTSIIAGLRLNNR 470 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH-HHHHHhCCC----CCeeeHHHHHHHHHHCCC
Confidence 888888888888888888887778888888888888888888777766 777777753 467778888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
.++|+.+|++|.. +++||..+|+.++.+|++.|+++.+.+++..+.+.|..++..+++.|+++|+++|++++|.++|+.
T Consensus 471 ~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~ 549 (857)
T PLN03077 471 CFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS 549 (857)
T ss_pred HHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHh
Confidence 8888888888875 478888888888888888888888888888888888889999999999999999999999999988
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCCC
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ-HSEIKPD 581 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~ 581 (638)
+ .||..+||+++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+
T Consensus 550 ~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 550 H-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred c-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 7 489999999999999999999999999999999999999999999999999999999999999999 5799999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccC
Q 006624 582 AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (638)
..+|++++++|++.|++++|.+++++| ++.||..+|++|+.+|...|+.+.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~ 675 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVEL 675 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHH
Confidence 999999999999999999999999999 589999999999999998887764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-69 Score=590.46 Aligned_cols=510 Identities=18% Similarity=0.231 Sum_probs=454.5
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++...|.++|+... ++|..+||.++.+|++.|++++|+++|++|...|+.||..+|+.+++++++.++++.+.+
T Consensus 134 ~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~ 208 (857)
T PLN03077 134 FGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGRE 208 (857)
T ss_pred CCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHH
Confidence 345667777777442 357788888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
++..+.+.|+.|+..+||.++.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|+.++|+++|++|.+.|
T Consensus 209 ~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 209 VHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred HHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 888888888888888889999999999999999999988854 788889999999999999999999999998888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+.||..+|+.++.++++.|+.+.|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 8999999999999999999999999999999888888899999999999999999999999998885 468888999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|+.+.+ .++++.+.+.|+.|+..+|+.++++|++.|
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a-~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g 438 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG-VKLHELAERKGLISYVVVANALIEMYSKCK 438 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHH-HHHHHHHHHhCCCcchHHHHHHHHHHHHcC
Confidence 9999999999999999999998888889999999999988888888777 888888888888889999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|.++|++|.. +..||..+|+.++.+|++.|+++.+.+++.
T Consensus 439 ~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 439 CIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred CHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 99999999988863 5677899999999999999999999999876 488899999999999999999999999999
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 006624 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.|+.+|..++|+|+.+|++.|++++|.++|+++ .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd 588 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD 588 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Confidence 9998899999999999999999999999999999887 57999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 582 AVSYNTILGCLSRAGMFEEAARLMKDMN-AKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++++|++.|++++|
T Consensus 589 ~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA 644 (857)
T PLN03077 589 EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEA 644 (857)
T ss_pred cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999 689999999999999999999998876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-63 Score=535.46 Aligned_cols=474 Identities=19% Similarity=0.278 Sum_probs=449.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
..+..+|+.++..|.+.|++++|.++|+.|...+ ..|+..+|+.++.++.+.++++.|.+++..|.+.|+.||..+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456789999999999999999999999998764 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.++++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~-----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE-----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC-----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 99999999999999999999964 8999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|++|. .+|..+||.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999995 4599999999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
+|.+.|+.||..||+.++.++++.+...++ .+++..|.+.|+.||..+|+.++++|++.|++++|.++|++|. .+
T Consensus 315 ~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a-~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~ 389 (697)
T PLN03081 315 EMRDSGVSIDQFTFSIMIRIFSRLALLEHA-KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389 (697)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhccchHHH-HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CC
Confidence 999999999999999999999999998888 8899999999999999999999999999999999999999986 46
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHH
Q 006624 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK-LRCKPDVYTYNALM 519 (638)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~ 519 (638)
|..+|+.+|.+|++.|+.++|.++|++|.+.|..||..+|+.++.+|++.|..++|.++|+.|.+ .|+.|+..+|+.++
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li 469 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHH
Confidence 88999999999999999999999999999999999999999999999999999999999999976 59999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCH
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMF 598 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (638)
++|++.|++++|.+++++| ++.|+..+|+.|+.+|+..|+++.|..+++++.+ +.|+ ..+|..++++|++.|++
T Consensus 470 ~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 470 ELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCH
Confidence 9999999999999998875 5789999999999999999999999999999974 4564 67999999999999999
Q ss_pred HHHHHHHHHHHhCCCC
Q 006624 599 EEAARLMKDMNAKGFE 614 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~ 614 (638)
++|.+++++|.+.|+.
T Consensus 545 ~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 545 AEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 9999999999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-63 Score=530.81 Aligned_cols=500 Identities=18% Similarity=0.259 Sum_probs=460.5
Q ss_pred ccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...+++..|+++|.|+....++.|+..+|+.++.++.+.++++.+.+++..|.+.|..|+..+|+.++.+|++.|++++|
T Consensus 98 ~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 98 VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 34577899999999998777788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.+.. ||..+|+.++.++++.|+.+.+.+++..+.+
T Consensus 178 ~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 252 (697)
T PLN03081 178 RRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSD-AEPRTFVVMLRASAGLGSARAGQQLHCCVLK 252 (697)
T ss_pred HHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999975 69999999999999999999999999999998876 9999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|+.||..+|+.|+++|++.|++++|.++|++|.. +|..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 253 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 253 TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred hCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999965 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+.+++ ..+|+.|. .||..+|+.||.+|++
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A-~~vf~~m~----~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA-RNVFDRMP----RKNLISWNALIAGYGN 403 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH-HHHHHhCC----CCCeeeHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888 89999986 4789999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE-YCGCSSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .+..|+..+|+.++++|++.|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
++++| ++.|+..+|++|+.+|...|+++.|..+++++.+. .| +..+|..|++.|++.|++++|.++++.|.+.|
T Consensus 484 ~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 484 MIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99876 46899999999999999999999999999999764 45 47799999999999999999999999999998
Q ss_pred CCCCH-HHHHHHH---HHHH--------hcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 578 IKPDA-VSYNTIL---GCLS--------RAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 578 ~~p~~-~~~~~l~---~~~~--------~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
++..+ .+|..+- +.+. ...-++...++.++|.+.|+.||..
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 76432 2332110 0010 0112455667888999999999853
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=302.48 Aligned_cols=517 Identities=13% Similarity=0.050 Sum_probs=419.1
Q ss_pred ccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 100 NIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 100 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
...++.+.|+.+|..+.... +.+...|..+..++...|++++|...++.+.+.. +........++..+.+.|++++|
T Consensus 374 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 450 (899)
T TIGR02917 374 LALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKA 450 (899)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHH
Confidence 34566777777777665443 3456677777777778888888888887776643 23344556677778888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
..+++++.... +.+..++..+...+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+
T Consensus 451 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 451 LAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888887653 34677888888888899999999999998888665 5667778888888888999999999998887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.+ +.+..++..+...+.+.|+.++|...++++...++. +...+..++..+.+.|++++|..+++.+.+.. +.+..+|
T Consensus 528 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 604 (899)
T TIGR02917 528 ID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAW 604 (899)
T ss_pred hC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 64 446778888888898999999999999888877543 66778888888999999999999999988764 3477888
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
..+..+|.+.|++++|...|+.+.+.. +.+...+..+...+...++..++ ...++.+.... +.+..++..++..+..
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 681 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKA-ITSLKRALELK-PDNTEAQIGLAQLLLA 681 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHH-HHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 899999999999999999999987754 23556677777778888887777 67777777653 4457888889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|..+++.+.+.. +.+...+..++..+...|++++|.+.++.+.... |+..++..++.++.+.|++++|...
T Consensus 682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~ 758 (899)
T TIGR02917 682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKT 758 (899)
T ss_pred cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998876 6778888889999999999999999999998864 3446777888999999999999999
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006624 500 FNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
++++.+.. +.+...+..+...|...|++++|.+.|+++.+.. +++..+++.++..+...|+ .+|+.+++++.+.. +
T Consensus 759 ~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~ 834 (899)
T TIGR02917 759 LEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P 834 (899)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C
Confidence 99988764 5567888889999999999999999999999874 4578889999999999999 88999999998743 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
-+..++..+..++.+.|++++|.++++++.+.+ +.+..++..+..++.+.|+.++|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 890 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEA 890 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHH
Confidence 256678889999999999999999999999875 34888999999999999998876
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-31 Score=299.23 Aligned_cols=512 Identities=13% Similarity=0.079 Sum_probs=303.6
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++.+.|...|..+.... +.+...+..+..++.+.|++++|+..++.+.... +.+...+..+...+.+.|++++|..
T Consensus 308 ~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 445566666666554433 3455566666777777777777777777766543 4456667777777777777777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.|+++.+..+. +...+..+...+...|++++|++.|+.+....+ ........++..+.+.|++++|.++++.+.+.
T Consensus 385 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 460 (899)
T TIGR02917 385 YLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDP--ELGRADLLLILSYLRSGQFDKALAAAKKLEKK- 460 (899)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC--cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence 77777665332 555666666667777777777777777666543 23334445556666666666666666666654
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
.+.+..++..+...+...|++++|.+.|+++.+..+. +...+..+...+...|++++|...|+++.+..+. +..++..
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 538 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILA 538 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHH
Confidence 2345566666666777777777777777666655433 4555556666666666666666666666665332 5556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
+...+.+.|+.++|..+++++...+ ..+...+..+...+...|+..++ ..+++.+.... +.+...|..+..++.+.|
T Consensus 539 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 539 LAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKA-LAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHH-HHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 6666666666666666666665533 12344455555555556655555 55555555432 345556666666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...++++.+.. +.+...+..++..+.+.|++++|...++++.+. .+.+...+..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666543 445555666666666666666666666666554 33445555666666666666666666666
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 006624 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
.+.+.+ +++...+..+...+...|++++|.+.|+++.+.+ |+..++..++..+.+.|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 665543 3344455555555566666666666666655542 333445555555555666666666555555432 224
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 006624 582 AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
...+..+...|.+.|++++|.++|+++.+.. +++..++..+...+.+.|+
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 4555555555555666666666666555432 3344455555555554444
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-23 Score=234.42 Aligned_cols=549 Identities=10% Similarity=0.042 Sum_probs=378.1
Q ss_pred CCCCCcHHHHHHhhc-ccC-ChHHHHHHh---ccccchHHHHHHHHHhhcCCCCCCCHHHH----------------HHH
Q 006624 73 FKWGPDAEKALEVLK-MRV-DHRLVHQVL---NIDVEINVKIQFFKWAGRRRNFEHNSTTY----------------MAL 131 (638)
Q Consensus 73 ~~~~~~~~~~l~~~~-~~~-~~~~~~~vl---~~~~~~~~a~~~f~~~~~~~~~~~~~~~~----------------~~l 131 (638)
.+-...+.+.|..+. +.+ +|....... -..++.+.|.+.++.+.+.. +.+...+ ...
T Consensus 41 ~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~ 118 (1157)
T PRK11447 41 THREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQ 118 (1157)
T ss_pred hCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHH
Confidence 333344556666443 222 233333322 24678899998888665544 3343332 344
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSV-LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
.+.+.+.|++++|.+.|+.+.... +++... ...........|+.++|++.|+++.+..+. +...+..+...+...|+
T Consensus 119 A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~ 196 (1157)
T PRK11447 119 ARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGR 196 (1157)
T ss_pred HHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCC
Confidence 567889999999999999998753 444322 111222233469999999999999988544 77888899999999999
Q ss_pred HhHHHHHHHHHHhCCCCC-----------------CCH-HHHH----------------------------------HHH
Q 006624 211 YEKIHELYNEMCNEGNCF-----------------PDT-VTYS----------------------------------ALI 238 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~-----------------~~~-~~~~----------------------------------~l~ 238 (638)
+++|++.++++....... ++. ..+. ...
T Consensus 197 ~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G 276 (1157)
T PRK11447 197 RDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQG 276 (1157)
T ss_pred HHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHH
Confidence 999999999997643210 010 0111 112
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHH------------H
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTY------------T 305 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~------------~ 305 (638)
..+...|++++|+..|++..+.. +.+..++..+...+.+.|++++|+..|++..+..+... ...+ .
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 34566799999999999998863 34788899999999999999999999999987754322 1112 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 384 (638)
.....+.+.|++++|...|+++++..+. +...+..+...+...|++++|.+.|+++.+.. |+ ...+..+...+ ..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~-~~ 431 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLY-RQ 431 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH-Hh
Confidence 2245677899999999999999987543 66778888999999999999999999998754 44 34444444444 44
Q ss_pred CChHHHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 006624 385 KAPASEASAWFEKMKANGVL--------PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
++..++ ..+++.+...... -....+..+...+...|++++|++.+++..+.. |.++..+..+...|.+.|
T Consensus 432 ~~~~~A-~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 432 QSPEKA-LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred cCHHHH-HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 455444 5555543321100 011234556677888899999999999988875 667778888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------------------------------
Q 006624 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL------------------------------ 506 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------------------------------ 506 (638)
++++|...++++.+.. +.+...+..+...+...++.++|+..++.+...
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999887742 233333333333333444444444443332110
Q ss_pred ---------CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 507 ---------RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 507 ---------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
..+++...+..+...+.+.|++++|++.|++.++.. +.+...+..++..+...|++++|.+.++.+.+.
T Consensus 589 ~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 589 EAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 123445566778888999999999999999999863 336888899999999999999999999988754
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC---CHhhHHHHHHHHhccCCccCC
Q 006624 578 IKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF--EY---DQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 578 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~a 636 (638)
.| +..++..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A 730 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQA 730 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHH
Confidence 33 456677788899999999999999999886421 22 224566666777777776654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-23 Score=231.08 Aligned_cols=548 Identities=13% Similarity=0.082 Sum_probs=362.2
Q ss_pred cccccccCCChhhHHHHHHHHHhcCCCCCcHHHHHHhhccc-CChHH------------------H--HHHhccccchHH
Q 006624 49 SKKFARKDTSARKLDERFIRILKIFKWGPDAEKALEVLKMR-VDHRL------------------V--HQVLNIDVEINV 107 (638)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~------------------~--~~vl~~~~~~~~ 107 (638)
+.+++..+|....+.....++....+-...+.+.++.+... ++... + ..++...++.+.
T Consensus 51 l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~e 130 (1157)
T PRK11447 51 LYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEE 130 (1157)
T ss_pred HHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHH
Confidence 55666666655555554445444444444444444433211 11111 1 113444678899
Q ss_pred HHHHHHHhhcCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006624 108 KIQFFKWAGRRRNFEHNST-TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQI 186 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 186 (638)
|++.|+.+.... +++.. ....+.......|++++|++.++++.+.. +.++..+..+...+...|+.++|+..++++
T Consensus 131 A~~~~~~~l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~ 207 (1157)
T PRK11447 131 ALASYDKLFNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQM 207 (1157)
T ss_pred HHHHHHHHccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999998776443 33322 11112222335689999999999998864 557778888999999999999999999887
Q ss_pred hhCCC------------------C--------------CCHHH---------------------HHHHHHHHHhcCCHhH
Q 006624 187 KSRKC------------------K--------------PTANT---------------------YNSMILMLMQEGYYEK 213 (638)
Q Consensus 187 ~~~~~------------------~--------------~~~~~---------------------~~~l~~~~~~~g~~~~ 213 (638)
..... . |+... .......+...|++++
T Consensus 208 ~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~ 287 (1157)
T PRK11447 208 AKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGK 287 (1157)
T ss_pred hhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHH
Confidence 54311 0 00000 0122455677899999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHH------------HHHHHHHHhcC
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIY------------TTLVSIYFKLG 280 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~------------~~li~~~~~~g 280 (638)
|+..|++.++..+ .+...+..+...+.+.|++++|++.|++..+..... +...+ ......+.+.|
T Consensus 288 A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 288 AIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 9999999998775 578889999999999999999999999998764211 11112 22345677899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++++|++.|+++.+..+. +...+..+...+...|++++|++.|+++++.... +...+..+...|. .++.++|..+++
T Consensus 366 ~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~ 442 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIA 442 (1157)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHH
Confidence 999999999999988654 6778888899999999999999999999986433 4455555555553 334566655555
Q ss_pred HHHHCCCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 361 KMEALQCK--------PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 361 ~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
.+...... .....+..+...+...++..++ ...+++..+.. +-+...+..+...|.+.|++++|...+++
T Consensus 443 ~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA-~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 443 SLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQA-AELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred hCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43221100 0011222333344445555444 44445544432 12344455555566666666666666666
Q ss_pred HHhCCCCCCHhhHHHH--------------------------------------------HHHHHccCCHHHHHHHHHHH
Q 006624 433 MEEKGFPPCPAAYCSL--------------------------------------------INGYGKAKRYEAANELFLEL 468 (638)
Q Consensus 433 ~~~~~~~~~~~~~~~l--------------------------------------------i~~~~~~g~~~~A~~~~~~~ 468 (638)
+.+.. +.++..+..+ ...+...|+.++|.++++
T Consensus 521 al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-- 597 (1157)
T PRK11447 521 LAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-- 597 (1157)
T ss_pred HHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 55432 3333333332 334455555666655554
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006624 469 KEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN 548 (638)
Q Consensus 469 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 548 (638)
..+.+...+..+...+.+.|++++|+..|++..+.. +.+...+..++..+...|++++|++.++.+.+.. +.+..
T Consensus 598 ---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~ 672 (1157)
T PRK11447 598 ---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLN 672 (1157)
T ss_pred ---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChH
Confidence 134566677888999999999999999999999864 4457888999999999999999999999888752 23566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCC
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KP---DAVSYNTILGCLSRAGMFEEAARLMKDMNA-KGFE 614 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~ 614 (638)
.+..+..++...|++++|.++++++..... .| +...+..+.+.+...|++++|.+.|++... .|+.
T Consensus 673 ~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 777888999999999999999999986421 22 235666778899999999999999999864 3443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-23 Score=199.67 Aligned_cols=429 Identities=16% Similarity=0.128 Sum_probs=252.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
-..+..-+.+.|++.+|.+.-......+ +.+....-.+-..+.+..+++.....-....+.. ..-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4455666667777777777655444432 2222333333444555555555544433333332 2256677777777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhcCCHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT-TLVSIYFKLGEVEKAL 286 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~ 286 (638)
.|++++|+.+|+.+++..+ .....|..+..++...|+.+.|.+.|.+.++. .|+..... .+...+-..|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~p--~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP--KFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc--hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 7778888888777777654 45667777777777777777777777777764 35544433 3444444567777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+.++..+. -...|+.|...+-.+|++..|++.|++.++..+. -...|-.|.+.|...+.++.|...|.+....
T Consensus 205 ~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 205 ACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 777777665432 3556777777777777777888777777765332 3456667777777777777777777665442
Q ss_pred CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006624 367 CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYC 446 (638)
Q Consensus 367 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 446 (638)
.|+. ...+..+...|...|..+.|+..|++.++.. |.-+.+|+
T Consensus 282 -rpn~-----------------------------------A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~ 324 (966)
T KOG4626|consen 282 -RPNH-----------------------------------AVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYN 324 (966)
T ss_pred -CCcc-----------------------------------hhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHh
Confidence 2222 1223333444555555666666666555543 44455566
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHc
Q 006624 447 SLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRA 525 (638)
Q Consensus 447 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~ 525 (638)
.+..++-..|++.+|.+.+.+.... .+......+.|...|...|.+++|.++|....+. .|. ....+.|...|-++
T Consensus 325 NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 325 NLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhc
Confidence 6666666566666666666655554 2333445555556666666666666666555542 233 33455555555666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 006624 526 GMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 526 g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
|++++|+..|++.+. +.|+ ...|+.+...|-..|+.+.|.+.+.+.+. +.|. ...++.|...|..+|+..+|+.
T Consensus 402 gnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 666666666666555 3444 44555566666666666666666665553 2333 3345555566666666666666
Q ss_pred HHHHHH
Q 006624 604 LMKDMN 609 (638)
Q Consensus 604 ~~~~m~ 609 (638)
-+++.+
T Consensus 478 sY~~aL 483 (966)
T KOG4626|consen 478 SYRTAL 483 (966)
T ss_pred HHHHHH
Confidence 666555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-22 Score=188.38 Aligned_cols=435 Identities=20% Similarity=0.210 Sum_probs=345.4
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++...|.+--..+.++. +.+....-.+-.++.+..+.+....--....+. .+-...+|..+.+.+-..|++++|+..
T Consensus 62 gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 45555655555444333 122223333445566666666555544444443 244567899999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT-YSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
|+.+.+..++ .+..|..+..++...|+.+.|.+.|.+.++.+ |+... .+.+...+-..|++.+|...+.+.++.
T Consensus 139 y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln---P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~- 213 (966)
T KOG4626|consen 139 YRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN---PDLYCARSDLGNLLKAEGRLEEAKACYLKAIET- 213 (966)
T ss_pred HHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC---cchhhhhcchhHHHHhhcccchhHHHHHHHHhh-
Confidence 9999988544 78899999999999999999999999999976 55444 344555556689999999999998875
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006624 262 LQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340 (638)
Q Consensus 262 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 340 (638)
.|. ...|+.|...+-.+|+...|+..|++....++. -...|..|...|...+.+++|+..|.+.....+. ..+++.
T Consensus 214 -qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~g 290 (966)
T KOG4626|consen 214 -QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHG 290 (966)
T ss_pred -CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhcc
Confidence 344 567999999999999999999999999987654 4678899999999999999999999999876433 567888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (638)
.+...|...|.+|.|+..|++..+.. |+ =+..|+.|..++-..
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~--P~-----------------------------------F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ--PN-----------------------------------FPDAYNNLANALKDK 333 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC--CC-----------------------------------chHHHhHHHHHHHhc
Confidence 89999999999999999999887632 21 134677788888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLF 500 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 500 (638)
|++.+|.+.|.+..... +....+.+.|...|...|.+++|..+|....+. .+.-....+.|...|-.+|++++|+..+
T Consensus 334 G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v-~p~~aaa~nNLa~i~kqqgnl~~Ai~~Y 411 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV-FPEFAAAHNNLASIYKQQGNLDDAIMCY 411 (966)
T ss_pred cchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh-ChhhhhhhhhHHHHHHhcccHHHHHHHH
Confidence 99999999999988875 667788899999999999999999999998884 3333567889999999999999999999
Q ss_pred HHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 006624 501 NEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 501 ~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
++..+ +.|+ ...|+.+...|-..|+.+.|++.+.+++.. .|. ...++.|...|-..|++.+|+.-++.... +
T Consensus 412 kealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--l 485 (966)
T KOG4626|consen 412 KEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--L 485 (966)
T ss_pred HHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--c
Confidence 99887 4676 668999999999999999999999999984 455 67889999999999999999999999885 4
Q ss_pred CCCH-HHHHHHHHHHH
Q 006624 579 KPDA-VSYNTILGCLS 593 (638)
Q Consensus 579 ~p~~-~~~~~l~~~~~ 593 (638)
+||. ..|..++.++-
T Consensus 486 kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 486 KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred CCCCchhhhHHHHHHH
Confidence 6663 45666666553
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.7e-20 Score=197.90 Aligned_cols=506 Identities=10% Similarity=0.019 Sum_probs=282.5
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.++++.|+..|+.+.+.. |.+..++..+.+.|.+.|++++|...+++.++. .|+...+...+..+ +++++|..
T Consensus 57 ~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~ 129 (987)
T PRK09782 57 NNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT 129 (987)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence 366777777787776655 456777777888888888888888888877774 33333333322222 77777777
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHH--------HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH-HHHHHccCChHHHHH
Q 006624 182 IFYQIKSRKCKPTANTYNSMILM--------LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL-ISAFGKLGRDISAIR 252 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~ 252 (638)
+|+++.+..+. +...+..+... |.+.++..++++ .....+. |+..+.... ...|.+.|++++|++
T Consensus 130 ~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~-~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 130 TVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAAS-PEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCC-CCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 77777776433 44444444444 444433333333 2221211 334433333 667777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 253 LFDEMKENGLQPTAKIYTTLVSIYFK-LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++.++.+.+ +.+......|...|.. .++ +++..+++... .-+...+..++..|.+.|+.++|.++++++...-
T Consensus 204 lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~l----k~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGI----FTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhc----ccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 777777664 2344445555555555 244 55555544211 1355566666666666666666666665543211
Q ss_pred CC-C----------------------------------------------------------------------------
Q 006624 332 CK-P---------------------------------------------------------------------------- 334 (638)
Q Consensus 332 ~~-p---------------------------------------------------------------------------- 334 (638)
.. |
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 357 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRN 357 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCc
Confidence 00 0
Q ss_pred -----------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCChHHH--HHH
Q 006624 335 -----------------DIVLINNLINVLGRAGRLEDALKLFNKMEAL--QCKPNVVTYNTVIKSLFESKAPASE--ASA 393 (638)
Q Consensus 335 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a--~~~ 393 (638)
+......+.....+.|+.++|..+++..... +..++....+.++..+.+.+..... +..
T Consensus 358 ~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 437 (987)
T PRK09782 358 KAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAI 437 (987)
T ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHH
Confidence 1111111122233456666666666666442 1122223333445554444331100 000
Q ss_pred H----------------------HHHHHh-CCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 394 W----------------------FEKMKA-NGV-LP--SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 394 ~----------------------~~~~~~-~~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
+ .+.... .+. ++ +...|..+..++.. ++.++|...+.+..... |+......
T Consensus 438 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~ 514 (987)
T PRK09782 438 LSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRA 514 (987)
T ss_pred hccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHH
Confidence 0 011110 011 23 45566666666655 67777777666666543 44434444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCC
Q 006624 448 LINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGM 527 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 527 (638)
+...+...|++++|...|+++... +|+...+..+...+...|++++|...+++..+.. +++...+..+...+...|+
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 444556777777777777776553 3333445555666777777777777777776653 2222223333333445577
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
+++|...+++.++. .|+...+..+...+.+.|++++|...+++..... +.+...++.+..++...|++++|+..+++
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777777764 4566677777777777777777777777777542 12455666677777777777777777777
Q ss_pred HHhCCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 608 MNAKGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 608 m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..+.. +-+...+..+..++...|+.++|
T Consensus 669 AL~l~-P~~~~a~~nLA~al~~lGd~~eA 696 (987)
T PRK09782 669 AHKGL-PDDPALIRQLAYVNQRLDDMAAT 696 (987)
T ss_pred HHHhC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 76542 33445666677777777766554
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-19 Score=189.84 Aligned_cols=431 Identities=13% Similarity=0.003 Sum_probs=264.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..+......+.+.|++++|+..|++.+. ..|++..|..+..+|.+.|++++|+..+.+..+..+. +...|..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHH
Confidence 3466778888999999999999999887 5677888888999999999999999999999887533 677888899999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
...|++++|+..|..+...+. .+......++..+.. ..+........+.. +++...+..+.. |......+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~--~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDG--FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCC--CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcc
Confidence 999999999998887766543 222222222222111 12233333333321 222222222222 2221111111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 286 LGLVQEMKGKGCALTVYTYTELIKG---LGRAGRVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 286 ~~~~~~m~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
..-+....+.... ....+..+... ....+++++|...|+...+.+ ..| +...++.+...+...|++++|...++
T Consensus 277 ~~~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 277 PAGLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1111111111100 00111111111 123467888888888888764 222 44567777888888889999998888
Q ss_pred HHHHCCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 361 KMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 361 ~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 439 (638)
+..+.. |+ ...|..+...+...|+..++ ...++...+.. +.+...|..+...+...|++++|...|++..+.. +
T Consensus 356 kal~l~--P~~~~~~~~la~~~~~~g~~~eA-~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P 430 (615)
T TIGR00990 356 KSIELD--PRVTQSYIKRASMNLELGDPDKA-EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-P 430 (615)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-c
Confidence 887643 44 33555555555666666555 55555555442 3345667777777777777777777777777664 5
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh------
Q 006624 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY------ 513 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------ 513 (638)
.+...+..+...+.+.|++++|...|+...+. .+.+...++.+...+...|++++|...|++..+..-..+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 56666777777777777777777777777664 34456677777777777777777777777766542110110
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.++.....+...|++++|.+++++.++.. +.+...+..++..+.+.|++++|.+.|++..+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 11111222333577777777777776643 12344566677777777777777777777664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-18 Score=176.47 Aligned_cols=499 Identities=15% Similarity=0.122 Sum_probs=380.0
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
...+++.+.-+-... ++++.+.+.|.+-|.-.|++..+|.+...+..... +.-...|..+.++|...|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 355666666554444 46788999999999999999999999999877531 23345689999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHHH
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRLFDEMK 258 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~m~ 258 (638)
|.+..+......+..+--++..+++.|+++.+...|+.+.+..+ .+..+...|...|...+ ..+.|..++.+..
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p--~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~ 407 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP--NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL 407 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc--chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99988774433355566788999999999999999999999875 56778888888887775 5577888888877
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---C
Q 006624 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK----GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---G 331 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~ 331 (638)
+.- +.|...|-.+...+....-+.. +..|.... ..+-.+.....|.+...+...|.+++|...|+..... .
T Consensus 408 ~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~ 485 (1018)
T KOG2002|consen 408 EQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV 485 (1018)
T ss_pred hcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence 753 4578889888888876655444 66665543 3454578899999999999999999999999998865 1
Q ss_pred CCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006624 332 CKPDI------VLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 332 ~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (638)
..+|. .+-..+...+-..++.+.|.+.|..+.+.. |+.+....-+.+..+.......+..++....... ..
T Consensus 486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~ 562 (1018)
T KOG2002|consen 486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SS 562 (1018)
T ss_pred cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cC
Confidence 22232 234456777778889999999999998854 6766555555455555454444477777666542 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHc------------cCCHHHHHHHHHHHHHcC
Q 006624 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG-FPPCPAAYCSLINGYGK------------AKRYEAANELFLELKEYC 472 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~ 472 (638)
++..++.+...+.+...+..|.+-|+...+.- ..+|+.+..+|.+.|.. .+..++|+++|.++++.
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~- 641 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN- 641 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-
Confidence 66677778889999999999999777766542 23677777777776543 24678899999999886
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHH
Q 006624 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED-GCVPDINSHN 551 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~ 551 (638)
.+.|...-|-+.-+++..|++.+|..+|.+..+... .+..+|-.+.++|...|++..|+++|+...+. ....+.....
T Consensus 642 dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~ 720 (1018)
T KOG2002|consen 642 DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLH 720 (1018)
T ss_pred CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHH
Confidence 567788889999999999999999999999988642 34567889999999999999999999987765 4445788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH------------------HhcCCHHHHHHHHHHHHhCCC
Q 006624 552 IILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL------------------SRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~------------------~~~g~~~~A~~~~~~m~~~~~ 613 (638)
.|.+++.+.|++.+|.+.+.........-..+.||..+-.. ...+..+.|.++|.+|...+-
T Consensus 721 ~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 721 YLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988754333344555443222 233567889999999987653
Q ss_pred C
Q 006624 614 E 614 (638)
Q Consensus 614 ~ 614 (638)
.
T Consensus 801 ~ 801 (1018)
T KOG2002|consen 801 K 801 (1018)
T ss_pred C
Confidence 3
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-17 Score=180.14 Aligned_cols=430 Identities=12% Similarity=0.069 Sum_probs=281.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ-EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
.+.|.+.|++++|+..+.++.+.++. +......+..+|.+ .++ +++..+++...+ .+...+..+...+.+.|
T Consensus 189 ~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk-----~d~~l~~ala~~yi~~G 261 (987)
T PRK09782 189 LQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIF-----TDPQSRITYATALAYRG 261 (987)
T ss_pred HHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcc-----cCHHHHHHHHHHHHHCC
Confidence 66666667777777777776666433 44445555566665 255 555555443111 45566666777777777
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHHH------------------------------HHHHHHHHhcCCHHHHHHHH-----
Q 006624 246 RDISAIRLFDEMKENGLQ-PTAKIY------------------------------TTLVSIYFKLGEVEKALGLV----- 289 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~-~~~~~~------------------------------~~li~~~~~~g~~~~A~~~~----- 289 (638)
+.++|.++++++...-.. |+..++ ..++..+.+.++++.++++.
T Consensus 262 ~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (987)
T PRK09782 262 EKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPA 341 (987)
T ss_pred CHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCc
Confidence 777777766665432111 111111 11133344444444443331
Q ss_pred ------------------------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH
Q 006624 290 ------------------------QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLI 343 (638)
Q Consensus 290 ------------------------~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~ 343 (638)
+.|.+..+. +......+.-...+.|+.++|.++|+..... .-.++......++
T Consensus 342 ~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~ 420 (987)
T PRK09782 342 NEMLEERYAVSVATRNKAEALRLARLLYQQEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLA 420 (987)
T ss_pred chHHHHHHhhccccCchhHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHH
Confidence 111111110 2222333333456678889999999888762 1223455566788
Q ss_pred HHHHccCC---HHHHHHH----------------------HHHHHHC-CCCC---CHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 344 NVLGRAGR---LEDALKL----------------------FNKMEAL-QCKP---NVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 344 ~~~~~~g~---~~~A~~~----------------------~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
..|.+.+. ..++..+ ++..... +..| +...|..+-..+.. ++..++ ...
T Consensus 421 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eA-i~a 498 (987)
T PRK09782 421 SLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVA-LYA 498 (987)
T ss_pred HHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHH-HHH
Confidence 88887766 3333222 1111111 1212 45555655555554 666666 444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
+...... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|+.++|...++...+.. +
T Consensus 499 ~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P 573 (987)
T PRK09782 499 WLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-L 573 (987)
T ss_pred HHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 4444433 356554444555667999999999999998665 4555667778888999999999999999999864 3
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
.+...+..+.......|++++|...+++..+. .|+...|..+...+.+.|++++|+..+++.++.. +.+...++.+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG 650 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALG 650 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34444444445555669999999999999885 4788889999999999999999999999999974 33577888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQ 617 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 617 (638)
..+...|++++|+..+++..+.. +-+...+..+..++...|++++|...+++..+. .|+.
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~ 710 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQ 710 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC
Confidence 99999999999999999998753 225778899999999999999999999999854 4554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-18 Score=176.37 Aligned_cols=520 Identities=15% Similarity=0.102 Sum_probs=364.3
Q ss_pred chHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006624 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
+.+.|.+.|..+.++. ++++-..---+.+....++|..|..+|+.++... +.+|+. ..+..++.+.|+.+.|+.
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALL 220 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHH
Confidence 3578999999888777 6677666666677778899999999999977653 344443 445577889999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhc---CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQE---GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.|.+..+.++ .++.++-.|...-... ..+..++.++...-..++ .|+...+.|...|.-.|++..+..+.+.+.
T Consensus 221 a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 221 AFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 9999998854 2444444444333333 346778888888888776 678888999999999999999999999998
Q ss_pred HCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006624 259 ENGLQ--PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336 (638)
Q Consensus 259 ~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 336 (638)
..... .-...|..+..+|-..|++++|...|.+..+....--...+--+...+.+.|+++.+...|+...+..+ -+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chH
Confidence 75311 123458889999999999999999998888764432244555678899999999999999999998743 367
Q ss_pred HHHHHHHHHHHccC----CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH----HHHhCCCCCCHH
Q 006624 337 VLINNLINVLGRAG----RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFE----KMKANGVLPSPF 408 (638)
Q Consensus 337 ~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~ 408 (638)
.+...|...|...+ ..+.|..++.+..+.. .-|...|-.+-. +...++.... ...+. .+...+-.+.+.
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq-l~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ-LLEQTDPWAS-LDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH-HHHhcChHHH-HHHHHHHHHHHHHcCCCCCHH
Confidence 78888888887775 5677777777776643 224445544443 4445555444 44433 344555567788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCH------hhHHHHHHHHHccCCHHHHHHHHHHHHHcC-------
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEK---GFPPCP------AAYCSLINGYGKAKRYEAANELFLELKEYC------- 472 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------- 472 (638)
..|.+...+...|++++|...|...... ...++. .+-..+...+-..++.+.|.+.|..+.+..
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 8899999999999999999999887654 111222 123334444555556666666666665531
Q ss_pred --------------------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHH-
Q 006624 473 --------------------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVR- 524 (638)
Q Consensus 473 --------------------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~- 524 (638)
...++..++.+...+.+...+..|..-|+...+. ...+|.++.-.|...|.+
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 2233444444444555555555555544443322 112455555556555542
Q ss_pred -----------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006624 525 -----------AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593 (638)
Q Consensus 525 -----------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 593 (638)
.+..++|+++|.+.++.. +-|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|.
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYV 691 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHH
Confidence 234678888998888864 33777778888889999999999999999987543 24556888999999
Q ss_pred hcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhccCCccCC
Q 006624 594 RAGMFEEAARLMKDMNA-KGFEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 594 ~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
..|++..|+++|+...+ ..-.-+..+...|.+++.+.|.+.+|
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999998765 34455677888888998888877654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-20 Score=188.85 Aligned_cols=304 Identities=14% Similarity=0.139 Sum_probs=217.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHh
Q 006624 131 LIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMILMLMQ 207 (638)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 207 (638)
....+...|++++|+..|+++++.+ +.+..++..+...+...|++++|...++.+...+..++ ...+..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3445677889999999999998864 45667888888888999999999999988877532221 2567788888889
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT----AKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~ 283 (638)
.|++++|..+|+++.+..+ .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999887654 6677888888999999999999999998887653322 224566777888888999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
+|.+.++++.+..+. +...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++.+.
T Consensus 198 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 198 AARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998888876533 5667777888888888999999888888876443334567788888888888888888888877
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCC
Q 006624 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK---TNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~ 440 (638)
+.. |+...+..+...+.+.|+..++ ..+++.+.+. .|+..++..++..+.. .|+.++++.+++++.+.++.+
T Consensus 277 ~~~--p~~~~~~~la~~~~~~g~~~~A-~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 277 EEY--PGADLLLALAQLLEEQEGPEAA-QALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred HhC--CCchHHHHHHHHHHHhCCHHHH-HHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 643 4444445555555555555554 4555544443 3555555555555443 335566666666666554444
Q ss_pred CHh
Q 006624 441 CPA 443 (638)
Q Consensus 441 ~~~ 443 (638)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-20 Score=186.69 Aligned_cols=306 Identities=18% Similarity=0.207 Sum_probs=168.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 006624 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTELIKGLGRA 314 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 314 (638)
...+...|++++|...|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 444556677777777777777653 23455666677777777777777777776665432211 23456666666677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
|++++|..+|+++.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+...
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------------------- 177 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV---------------------- 177 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH----------------------
Confidence 77777777777766542 2355566666667777777777766666665432111000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
.....+..+...+.+.|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.++++.+.+..
T Consensus 178 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 178 ----------EIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred ----------HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 001123345555666677777777777666543 344455555566666666666666666665553222
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
....+++.++.+|...|++++|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++
T Consensus 247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 22334455555555555555555555555543 244444445555555555555555555555543 34555555444
Q ss_pred HHHHh---cCCHHHHHHHHHHhhhCCCCCCH
Q 006624 555 NGLAK---SGGPKRAMEIFTKMQHSEIKPDA 582 (638)
Q Consensus 555 ~~~~~---~g~~~~A~~~~~~m~~~~~~p~~ 582 (638)
..+.. .|+.+++..++++|.+.++.|++
T Consensus 323 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 323 DYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 44442 23455555555555544444443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-18 Score=180.87 Aligned_cols=333 Identities=11% Similarity=0.071 Sum_probs=229.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
.-.++..+.+.|++++|..+++..+... +-++..+..++.+....|++++|...|+++.+..+. +...+..+...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 3456777888999999999998888754 455666777777888899999999999999887543 67788888889999
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|++++|++.|+++....+ .+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|..
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred cCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence 9999999999999988765 5677888888889999999999999988876532 233344333 34778899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED----ALKLFNKME 363 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~ 363 (638)
.++.+.+....++...+..+...+...|++++|...++++.+.... +...+..+...+...|++++ |...++++.
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 9988877654445555566677888899999999999998877543 67777888888888888875 677777776
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
.... .+...+..+...+...|+..++ ...++...... +.+...+..+..++.+.|++++|...++++.+.+ +.+..
T Consensus 278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA-~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QFNS-DNVRIVTLYADALIRTGQNEKA-IPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hhCC-CCHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 6431 1333444555555555555554 44444444432 2233444555555666666666666666555543 22223
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
.+..+..++...|+.++|.+.|+.+.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3333444555566666666666665553
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-18 Score=180.86 Aligned_cols=335 Identities=11% Similarity=0.065 Sum_probs=242.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
-...++..+.+.|++++|..+++......+. +...+..++.+....|++++|.+.|+++....+ .+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P--~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV--CQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence 3455667788899999999999999887555 566666777888889999999999999999876 5677888889999
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 321 (638)
...|++++|...++++.+.. +.+...+..++..+...|++++|...++.+....+. +...+..+ ..+...|++++|.
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999998853 345778888999999999999999999988776554 33334333 3478899999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH---HHHHHHHH
Q 006624 322 GLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE---ASAWFEKM 398 (638)
Q Consensus 322 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~ 398 (638)
..++.+.+....++......+...+.+.|++++|...++.+..... .+...+..+-..+...|+..++ +...++..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 9999988775444555556667788899999999999999887542 2344555566666666666542 45666666
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHH
Q 006624 399 KANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSAR 478 (638)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 478 (638)
.... +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|.+.++.+..... .+..
T Consensus 277 l~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~ 353 (656)
T PRK15174 277 LQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSK 353 (656)
T ss_pred HhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchH
Confidence 5542 2345566666777777777777777777776654 55566666667777777777777777777666422 2223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.+..+..++...|+.++|...|++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3334455666677777777777766654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-17 Score=177.08 Aligned_cols=432 Identities=14% Similarity=-0.017 Sum_probs=306.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+....+.+.+.|++++|+..|++..+. .|+...|..+..+|.+.|++++|++.++..++..+ .+...|..+..+
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~a~a 203 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP--DYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence 34567788889999999999999998876 56778888999999999999999999999998765 577888889999
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
+...|++++|+..|......+- .+......++..+.. ..+........+.... +...+..+.. +........+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcc
Confidence 9999999999998877665431 122222222222222 2233333333333221 2222222222 2222222222
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHH---HHccCCHHHHHHHHHHHHHCC-CCCC-HhHHHHHHHHHHhcCChHHHHHHH
Q 006624 321 YGLFMNMLKEGCKPDI-VLINNLINV---LGRAGRLEDALKLFNKMEALQ-CKPN-VVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~-~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
..-+....+. .++. ..+..+... ....+++++|.+.|+...+.+ ..|+ ...++.+...+...|+..++ ...
T Consensus 277 ~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA-~~~ 353 (615)
T TIGR00990 277 PAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA-LAD 353 (615)
T ss_pred hhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH-HHH
Confidence 2222221111 1111 111111111 123478999999999998764 2343 44566666677778888877 777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
++...... +.+...|..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+. .+
T Consensus 354 ~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P 430 (615)
T TIGR00990 354 LSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DP 430 (615)
T ss_pred HHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-Cc
Confidence 77777652 2346688889999999999999999999998875 777899999999999999999999999999986 44
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN------ 548 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------ 548 (638)
.+...+..+...+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.++.....+..
T Consensus 431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 567888889999999999999999999998753 3457788999999999999999999999999853221111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
.++..+..+...|++++|.+++++...... .+...+..+...+.+.|++++|.++|++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 122222334457999999999999886532 24557889999999999999999999999864
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-17 Score=176.48 Aligned_cols=428 Identities=14% Similarity=0.075 Sum_probs=287.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++....-.+......|+.++|++++.+..... +.+...+..+..++.+.|++++|.++|++.+...+ .+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP--QNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHH
Confidence 35666777777788888888899988888887632 34566788888888888999999998888888765 5566677
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
.++..+...|++++|+..++++.+.. +.+.. +..+...+...|+.++|+..++++.+..+. +...+..+...+...|
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence 88888888888888888888888762 33555 778888888888888888888888887655 5666666777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh--
Q 006624 316 RVEDAYGLFMNMLKEGCKPDIV------LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP-- 387 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~-- 387 (638)
..++|+..++.... .|+.. ....++......+. ...++.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~------------------------------~~~~r~~~ 211 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR------------------------------SEKERYAI 211 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc------------------------------ChhHHHHH
Confidence 88888887776553 23310 00111111110000 000000
Q ss_pred HHHHHHHHHHHHhC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHH
Q 006624 388 ASEASAWFEKMKAN-GVLPSPF-TY----SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAA 461 (638)
Q Consensus 388 ~~a~~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 461 (638)
.+.+...++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+........+...|...|++++|
T Consensus 212 ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 212 ADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHH
Confidence 01123333444322 1112111 11 111234456688888888888888765221122333357788888888888
Q ss_pred HHHHHHHHHcCCCC---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----------CCCC---HhhHHHHHHHHHH
Q 006624 462 NELFLELKEYCGCS---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-----------CKPD---VYTYNALMSGMVR 524 (638)
Q Consensus 462 ~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~l~~~~~~ 524 (638)
...|+.+.+..... .......+..++...|++++|...++.+.+.. -.|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 88888877643211 13455666777888899999998888887642 0122 1234566777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 006624 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
.|+.++|+++++++.... +-+...+..++..+...|++++|++.+++.... .|+ ...+...+..+...|++++|..
T Consensus 372 ~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999998763 335778888888999999999999999998864 455 5566677778889999999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 604 LMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 604 ~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+++++.+. .|+......+-+..
T Consensus 449 ~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 449 LTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHH
Confidence 99999853 55555444443333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-17 Score=179.32 Aligned_cols=406 Identities=12% Similarity=0.050 Sum_probs=262.5
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
.+.++.--.-.+.+....|+.++|++++...... -+.+...+..+...+.+.|++++|..+|++..+..+ .+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 3556677778889999999999999999998763 255666799999999999999999999999988743 36777888
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++..+...|++++|+..++++.+..+ .+.. +..+...+...|+.++|+..++++.+.. +.+...+..+...+...|
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999865 5566 8889999999999999999999999874 335667777888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHc-CCCCCHH-HHH----
Q 006624 281 EVEKALGLVQEMKGKGCALTV------YTYTELIKGLG-----RAGRV---EDAYGLFMNMLKE-GCKPDIV-LIN---- 340 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~p~~~-~~~---- 340 (638)
..++|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. ...|+.. .+.
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 99999999987664 2221 01111222221 11223 5566666666643 1122211 110
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCK-PNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
..+..+...|++++|...|+.+.+.+.. |+.. . ..+...|..
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-----------------------------------~--~~la~~yl~ 284 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-----------------------------------Q--RWVASAYLK 284 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-----------------------------------H--HHHHHHHHh
Confidence 1122334456666666666665543311 1111 1 112344555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCc---HHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPC----PAAYCSLINGYGKAKRYEAANELFLELKEYCG-----------CSS---ARVYA 481 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~ 481 (638)
.|++++|+..|+++.+.. +.+ ......+..++...|++++|.+.++.+..... .|+ ...+.
T Consensus 285 ~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 285 LHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred cCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 555555555555554432 111 12334444455555566666655555554311 112 22344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 006624 482 VMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKS 560 (638)
Q Consensus 482 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 560 (638)
.+...+...|++++|+..++++.... +.+...+..+...+...|++++|++.+++.++. .|+ ...+...+..+...
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~ 440 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDL 440 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHh
Confidence 55666667777777777777766542 334556666666777777777777777777764 233 45555556666677
Q ss_pred CCHHHHHHHHHHhhhC
Q 006624 561 GGPKRAMEIFTKMQHS 576 (638)
Q Consensus 561 g~~~~A~~~~~~m~~~ 576 (638)
|++++|..+++++++.
T Consensus 441 ~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 441 QEWRQMDVLTDDVVAR 456 (765)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7777777777777653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-16 Score=166.70 Aligned_cols=454 Identities=14% Similarity=0.087 Sum_probs=299.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG--PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
+..+.+--.-+-...++|+++.|+..|++.++.. |+ +.++ .++..+...|+.++|+..+++..... ........
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 3344444455556778888888888888887743 33 2344 77777778888888888888877321 12333334
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+...+...|++++|+++|+++.+..+ .+...+..++..+...++.++|++.++++... .|+...+..++..+...
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 445677777888888888888888776 45566667777788888888888888888765 35555554555555456
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
++..+|++.++++.+..+. +...+..+...+.+.|-...|.++..+- |+..+-..... =+.+.|.+..
T Consensus 183 ~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~-----l~~~~~a~~v 250 (822)
T PRK14574 183 DRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ-----LERDAAAEQV 250 (822)
T ss_pred chHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH-----HHHHHHHHHH
Confidence 6666688888888877644 6677777777888888777777665542 22211111100 0112222222
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHH
Q 006624 360 NKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLP-SPFTY----SILIDGFCKTNRVEKAHLLLEEM 433 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~----~~l~~~~~~~~~~~~A~~~~~~~ 433 (638)
+......-. ...-|.. .+.+..-++.+.. .+-.| ....| --.+-++...|++.++++.|+.+
T Consensus 251 r~a~~~~~~-~~~r~~~-----------~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l 318 (822)
T PRK14574 251 RMAVLPTRS-ETERFDI-----------ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAM 318 (822)
T ss_pred hhccccccc-chhhHHH-----------HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 211100000 0000000 1111222233332 11112 21111 12345677889999999999999
Q ss_pred HhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 434 EEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508 (638)
Q Consensus 434 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 508 (638)
...+.+....+...+.++|...++.++|..++..+..... +++......|..+|...+++++|..+++.+.+...
T Consensus 319 ~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 319 EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 9888766677888999999999999999999999876431 23444457888899999999999999999887311
Q ss_pred -------------CCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 509 -------------KPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 509 -------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.|| ...+..++..+...|+..+|++.++++.... +-|......+.+.+...|.+.+|.+.++...
T Consensus 399 ~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~ 477 (822)
T PRK14574 399 YQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVE 477 (822)
T ss_pred cEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 112 1223455677888999999999999998864 3478888899999999999999999997776
Q ss_pred hCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 575 HSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 575 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.. .|+ ..+....+.++...|++.+|..+.+.+.+
T Consensus 478 ~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 478 SL--APRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred hh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 44 454 55666788888899999999999988874
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-15 Score=160.71 Aligned_cols=447 Identities=12% Similarity=0.090 Sum_probs=292.2
Q ss_pred cccchHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 101 IDVEINVKIQFFKWAGRRRNFEHNS-TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
..++...|+..|+.+.+.. +.+. ..+ .++..+...|+.++|...+++.+. ..+........++..+...|++++|
T Consensus 46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 4677889999999887554 3332 344 889999999999999999999873 1234445555557789999999999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+++|+++.+..+. +...+..++..+.+.++.++|++.++++.... |+...+..++..+...++..+|++.++++.+
T Consensus 122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999998655 57778888899999999999999999998865 5666665555555556777679999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.. +-+...+..+...+.+.|-...|+++.++-... + +...+.-+ . .+.|.+. ++.+..++..-
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f--~~~~~~~l-~-------~~~~a~~----vr~a~~~~~~~- 260 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-V--SAEHYRQL-E-------RDAAAEQ----VRMAVLPTRSE- 260 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-c--CHHHHHHH-H-------HHHHHHH----Hhhcccccccc-
Confidence 74 446788899999999999999999877663322 1 11111111 0 0111111 11111110000
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHh-HH----HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVV-TY----NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSIL 413 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~-~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 413 (638)
. . +---.+.|+.-++.+... +..|... .| .-.+.++...++..++ ...++.+...+.+....+-..+
T Consensus 261 ~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~v-i~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 261 T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADL-IKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHH-HHHHHHhhhcCCCCCHHHHHHH
Confidence 0 0 000123344444443321 1112111 11 1223344455555555 5556666666654344466667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CC--
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEKG-----FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-----------CS-- 475 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~-- 475 (638)
.++|...++.++|..+++++.... .+++......|.-++...+++++|..+++.+.+... .|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 777777788888888877775532 122333356677777777888888888877776311 11
Q ss_pred c-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 476 S-ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 476 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
| ...+..++..+...|++.+|.+.++++.... +-|......+.+.+...|.+.+|++.++.+.... +-+..+....+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~ 491 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQA 491 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHH
Confidence 1 2334556677788888888888888887653 5567777788888888888888888887666642 22456666777
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
..+...|++++|..+.+.+.+. .|+..
T Consensus 492 ~~al~l~e~~~A~~~~~~l~~~--~Pe~~ 518 (822)
T PRK14574 492 ETAMALQEWHQMELLTDDVISR--SPEDI 518 (822)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--CCCch
Confidence 7788888888888888887753 45444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-17 Score=152.79 Aligned_cols=482 Identities=16% Similarity=0.159 Sum_probs=295.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHhhCCCCC----CHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL-SEIVNILGKAKMVNKALSIFYQIKSRKCKP----TANTYNSM 201 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l 201 (638)
+...+.+.|..+....+|+..++-.++....|+.-.+ -.+.+.+.+..++.+|+++|.-....-+.. .....+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3344555666666666777777766666555554332 224455666667777777666554431111 12334555
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH--------HHHH
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY--------TTLV 273 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~--------~~li 273 (638)
...+.+.|+++.|+.-|+...+.. |+..+-..|+-.+...|+-++..+.|.+|+.....||..-| ..|+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~---pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEA---PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhC---ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 555666777777777777666644 55555444444444556666666667666654222222111 1111
Q ss_pred HHHHhcCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006624 274 SIYFKLGE-----------VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL 342 (638)
Q Consensus 274 ~~~~~~g~-----------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 342 (638)
.--.+... .++++-.-.+++.--+.|+-. . -.+-+++.++.-.-..+..+ .-..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~-g~dwcle~lk~s~~~~la~d--lei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA-----------A-GCDWCLESLKASQHAELAID--LEINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh-----------c-ccHHHHHHHHHhhhhhhhhh--hhhhH
Confidence 11111110 011111111111100111100 0 00111111111100000000 00112
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFES-KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 343 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
..-|.+.|+++.|.++++-+.+..-+......+.+-..++.. |+....+..+-+...... .-+......-......+|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 234678999999999999887765554444555544433333 333333344444333221 122222222233445689
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|.+.|++....+ .....+...+.-.+-..|++++|+++|-++... ...+..+.-.+.+.|....+...|++++.
T Consensus 505 d~dka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999998765 334445555556678889999999999988764 44567788889999999999999999998
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 006624 502 EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD 581 (638)
Q Consensus 502 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 581 (638)
+.... ++.|......|...|-+.|+-.+|.+++-.--.. ++.|..+...|..-|....-+++|+.+|++.. =+.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCcc
Confidence 87765 5667888999999999999999999887655443 45688898889999999999999999999976 46899
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCc
Q 006624 582 AVSYNTILG-CLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 582 ~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
..-|..++. ++.+.|+++.|+++++...++ ++-|..+...|++.|...|-.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 999997765 556799999999999999875 788999999999999877753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-14 Score=131.06 Aligned_cols=444 Identities=15% Similarity=0.179 Sum_probs=242.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCCHH-HHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG--KAKMVN-KALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+=|.+++. ...|...++--+|+.|.+.|++.++..-..+++.-+ ...++- .-++.|-.|...|-. +..+|
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 344555543 345667777777777777777777766555554332 222222 223445555544422 33333
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
+.|...+ ++-+. -+ .+..+|..+|.++|+.-..+.|.+++++......+.+..+||.+|.+-.-
T Consensus 191 ----K~G~vAd---L~~E~---~P--KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFET---LP--KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred ----ccccHHH---HHHhh---cC--CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 2333322 22222 11 45567777788888777777777777777766667777777777765432
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED----AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED-ALK 357 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~ 357 (638)
....+++.+|......||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 2226677777777777777778777777777776654 45566777777777777777777777777666533 444
Q ss_pred HHHHHHHC----CCC----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-----CCCC---HHHHHHHHHHHHhcC
Q 006624 358 LFNKMEAL----QCK----PNVVTYNTVIKSLFESKAPASEASAWFEKMKANG-----VLPS---PFTYSILIDGFCKTN 421 (638)
Q Consensus 358 ~~~~~~~~----~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~---~~~~~~l~~~~~~~~ 421 (638)
++.++... ..+ .|...|...+..+....+..-+ .++..-. +.| +.|+ .+-|..+....|+..
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA-~~v~~ll-~tg~N~~~ig~~~~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELA-YQVHGLL-KTGDNWKFIGPDQHRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHH-HHHHHHH-HcCCchhhcChHHHHHHHHHHHHHHHHHHH
Confidence 44444321 111 2344555555555544443322 4442222 222 1222 233455666666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
..+.-...|+.|.-.-+-|+..+...++++..-.|.++-..+++.++...|..-+......+...+++.
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~----------- 481 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD----------- 481 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC-----------
Confidence 677777777776655555666666666666666677776667766666654433333322222222222
Q ss_pred HHHhCCCCCCHh---hHHHHHHHHHHcCCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 502 EMKKLRCKPDVY---TYNALMSGMVRAGMIDDA-YSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 502 ~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
...|+.. -+.....-|+ -++.++ ..--.+|.+.. -.....+...-.+.+.|..++|.+++..+.+++
T Consensus 482 -----k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 482 -----KLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred -----CCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 1222211 1111111111 011111 11122333332 234455556666777777778877777775432
Q ss_pred -C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 578 -I---KPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 578 -~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
- .|......-+++.-.+..+...|...++-|...++
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1 22222333455555667777777777777765543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-13 Score=136.28 Aligned_cols=479 Identities=12% Similarity=0.049 Sum_probs=329.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
......++.+...|++++|..++.+.++.. +..+..|..|...|-..|+.+++...+-......+. |..-|-.+....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 344455566666799999999999998864 677888999999999999999999888777766544 678899999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCC
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT----TLVSIYFKLGE 281 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~----~li~~~~~~g~ 281 (638)
.+.|.+++|.-.|.++++..+ ++...+---...|-+.|+...|.+-|.++.....+.|..-+. ..++.+...++
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p--~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~ 295 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANP--SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE 295 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999876 666666666778888999999999999998864322322222 34556667777
Q ss_pred HHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------------------
Q 006624 282 VEKALGLVQEMKGK-GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-------------------------- 334 (638)
Q Consensus 282 ~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-------------------------- 334 (638)
-+.|.+.++..... +-..+...++.++..+.+...++.|......+......+
T Consensus 296 ~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s 375 (895)
T KOG2076|consen 296 RERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELS 375 (895)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCC
Confidence 78888888887762 222355677888888889999999988888777622222
Q ss_pred -CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC--CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 335 -DIVLINNLINVLGRAGRLEDALKLFNKMEALQ--CKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 335 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 411 (638)
+..++ -+.-++...+..+....+........ ..-+...|.-+..++...+...+| ..++..+.....--+...|-
T Consensus 376 ~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~A-l~~l~~i~~~~~~~~~~vw~ 453 (895)
T KOG2076|consen 376 YDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEA-LRLLSPITNREGYQNAFVWY 453 (895)
T ss_pred ccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHH-HHHHHHHhcCccccchhhhH
Confidence 22221 12223344444444444444444444 334556777888888888888888 88888888776666778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH--------HcCCCCcHHHHHHH
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELK--------EYCGCSSARVYAVM 483 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l 483 (638)
.+..+|...|.+++|.+.|+...... |.+..+-..|...+.+.|+.++|.+.+..+. .....|+.......
T Consensus 454 ~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r 532 (895)
T KOG2076|consen 454 KLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHR 532 (895)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHH
Confidence 99999999999999999999998875 7777888888888999999999999998854 22344555555666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----CCC-----------------CHhhHHHHHHHHHHcCCHHHHHHHHH-----
Q 006624 484 IKHFGKCGRLSDAVDLFNEMKKLR-----CKP-----------------DVYTYNALMSGMVRAGMIDDAYSLLR----- 536 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~-----~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~----- 536 (638)
...+...|+.++-+..-..|.... +-| ...+...++.+-.+.++......-..
T Consensus 533 ~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~ 612 (895)
T KOG2076|consen 533 CDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEF 612 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhh
Confidence 677778888777555544443211 111 11122223333333333222111111
Q ss_pred -HHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 537 -RMEEDGCVPDI--NSHNIILNGLAKSGGPKRAMEIFTKMQHSEI--KPDA---VSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 537 -~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
--...|+.-+. ..+.-++.++++.|++.+|..+...+..... .++. ..-...+.+....+++..|...++.|
T Consensus 613 ~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~ 692 (895)
T KOG2076|consen 613 RAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSV 692 (895)
T ss_pred hhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11112222221 2345677788999999999999998886422 2222 22345667778899999999999998
Q ss_pred HhC
Q 006624 609 NAK 611 (638)
Q Consensus 609 ~~~ 611 (638)
...
T Consensus 693 i~~ 695 (895)
T KOG2076|consen 693 ITQ 695 (895)
T ss_pred HHH
Confidence 753
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-13 Score=126.52 Aligned_cols=435 Identities=18% Similarity=0.233 Sum_probs=286.4
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--hcCChH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLD--ETRMIG-VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
+....+.-+|. .+++.|.+.+...-..+++.-+ .+.++. .-|+-|-.|...| ..+..+| +.|.+.+
T Consensus 129 ~EvKDs~ilY~-~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~vAd- 197 (625)
T KOG4422|consen 129 REVKDSCILYE-RMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAVAD- 197 (625)
T ss_pred cccchhHHHHH-HHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccHHH-
Confidence 33444555555 4456777777777766665433 333332 2222333333322 2222222 4454444
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
-+|+...+ +..+|..+|.++|+-.+.++|.++|++....... .+..+||.+|.+-.-.. ..+++.+|..
T Consensus 198 -L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k-v~~~aFN~lI~~~S~~~----~K~Lv~EMis 266 (625)
T KOG4422|consen 198 -LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGK-VYREAFNGLIGASSYSV----GKKLVAEMIS 266 (625)
T ss_pred -HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe-eeHHhhhhhhhHHHhhc----cHHHHHHHHH
Confidence 34444332 7889999999999999999999999999876554 89999999988765432 3789999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHc----
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEK----ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKE---- 330 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~---- 330 (638)
..+.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++...
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK 346 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGK 346 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccC
Confidence 9999999999999999999998765 56788999999999999999999999998888754 55555555542
Q ss_pred CCC----CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC----CCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006624 331 GCK----PDIVLINNLINVLGRAGRLEDALKLFNKMEALQ----CKPN---VVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 331 ~~~----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 399 (638)
..+ .|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.- ..+++.|.
T Consensus 347 ~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~-~~~Y~~lV 425 (625)
T KOG4422|consen 347 TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT-LKWYEDLV 425 (625)
T ss_pred cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhc
Confidence 222 245567777888889999999988877664421 1222 22344455555666555544 78888898
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH
Q 006624 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
-+-+-|+..+...++++..-.|.++-.-+++.++..-|...+.....-+...+++.. ..|+...
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------------~hp~tp~ 489 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------------LHPLTPE 489 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC----------------CCCCChH
Confidence 888889999999999999999999999999999988774444433333333333322 2222221
Q ss_pred HHHHHHHHHhc-CCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHH
Q 006624 480 YAVMIKHFGKC-GRLSDAV-DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC----VPDINSHNII 553 (638)
Q Consensus 480 ~~~li~~~~~~-g~~~~A~-~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~~l 553 (638)
-..+-..+.++ -++.++. ..-.++.+.. -.....+.+.-.+.+.|..++|.+++....+++- .|......-+
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El 567 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAEL 567 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHH
Confidence 11222222221 1122221 2223344433 3445566677778899999999999998866532 2334444456
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC
Q 006624 554 LNGLAKSGGPKRAMEIFTKMQHSEI 578 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~ 578 (638)
++.-.+..++..|...++-|...+.
T Consensus 568 ~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 568 MDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 6666777888889888888876543
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-12 Score=124.72 Aligned_cols=495 Identities=12% Similarity=0.055 Sum_probs=360.8
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 006624 109 IQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 109 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 188 (638)
.++++.+...- +.++..|...+ ...+.++|..++...++. |+.+...+ .+|++..-++.|..++++..+
T Consensus 366 ~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe 434 (913)
T KOG0495|consen 366 KRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKARE 434 (913)
T ss_pred HHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHh
Confidence 45555554332 44666665544 345666788888888774 44444444 445566678889999988877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh---CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-
Q 006624 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN---EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP- 264 (638)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~- 264 (638)
. ++.+...|.+-...--.+|+.+...++.++-+. .++...+...|..=...|-..|..--+..+....+..|+.-
T Consensus 435 ~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee 513 (913)
T KOG0495|consen 435 I-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE 513 (913)
T ss_pred h-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence 6 455888888777777788888888888776532 12223677777777778888888888888888888777644
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 265 -TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 265 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
-..+|+.-...|.+.+.++-|..+|...++.-+. +...|...+..--..|..++-..+|+++...-+ .....|....
T Consensus 514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~-k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~a 591 (913)
T KOG0495|consen 514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPC-KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYA 591 (913)
T ss_pred hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHH
Confidence 3567888888999999999999999888876544 666777777777778888999999999988733 3566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 344 NVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV 423 (638)
Q Consensus 344 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 423 (638)
..+...|++..|..++..+.+.... +...|-.-++....+...+.+ ..+|.+.... .|+...|..-+..---.+..
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era-R~llakar~~--sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA-RDLLAKARSI--SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH-HHHHHHHhcc--CCcchhhHHHhHHHHHhhhH
Confidence 7888889999999999998876533 566777777777777776666 8888777664 56777777777777778899
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 424 EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 424 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
++|++++++.++. ++.-...|..+.+.+-+.++++.|.+.|..-.+. ++..+..|-.+...--+.|.+-.|..++++.
T Consensus 668 eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildra 745 (913)
T KOG0495|consen 668 EEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRA 745 (913)
T ss_pred HHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 9999999988886 4667778899999999999999999998887775 5566778888888888889999999999988
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 006624 504 KKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV 583 (638)
Q Consensus 504 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 583 (638)
.-.+ +.+...|-..|..-.+.|+.+.|..+..++++. ++.+...|.--|...-+.++-......+++. .-|+.
T Consensus 746 rlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dph 818 (913)
T KOG0495|consen 746 RLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPH 818 (913)
T ss_pred HhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCch
Confidence 7765 556788888999999999999999998888875 4445556666666555555544444444433 23555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
..-.+...|....+++.|.++|.+..+.+ +.+.-+|--+..-..++|
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHG 865 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhC
Confidence 56666666777777777777777776442 222335655666555555
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.5e-15 Score=140.81 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=93.9
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHH
Q 006624 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALS 181 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~ 181 (638)
.+|+..|.-+.+...|+..-..-..+.+++.+.+++..|++.+...+..-.+.+ ..+.+.+...+.+.|.++.|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 577888888888887777666666788899999999999999998877532333 3456666667899999999999
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 182 IFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.|+...+. .|+..+-..|+-.+..-|+-++..+.|.+|+....
T Consensus 298 sfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~ 340 (840)
T KOG2003|consen 298 SFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPG 340 (840)
T ss_pred hHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCC
Confidence 99999887 57777665666666678999999999999987543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-12 Score=131.99 Aligned_cols=359 Identities=11% Similarity=0.070 Sum_probs=253.2
Q ss_pred cccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006624 101 IDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++++...|..++.-+.++. +.....|..|..+|-+.|+...+...+-.+-... +-|...|..+.....+.|+++.|.
T Consensus 151 arg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHH
Confidence 4688899999999888877 6678899999999999999999888776654433 556788999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
-.|.+..+..+. +...+---+..|-+.|+..+|.+-|.++....+. .|.. .-...++.+...++-+.|++.++.
T Consensus 228 ~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 228 YCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLIRRVAHYFITHNERERAAKALEG 305 (895)
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999988543 5555556678888999999999999999987651 2222 223446677778888999999988
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHH
Q 006624 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---------------------------TVYTYTELI 308 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---------------------------~~~~~~~li 308 (638)
.... +-..+...++.++..|.+...++.|......+......+ +.... -+.
T Consensus 306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ 384 (895)
T KOG2076|consen 306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLM 384 (895)
T ss_pred HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHh
Confidence 8763 223456678899999999999999998888777622222 22221 112
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 006624 309 KGLGRAGRVEDAYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 386 (638)
-++.+....+....+........ +.-+...|..+..+|...|++.+|+.+|..+......-+...|..+-.++...+.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 23333444444444444444444 3445667888888888888888888888888776655566777777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--------CCCCCCHhhHHHHHHHHHccCCH
Q 006624 387 PASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE--------KGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
.+.| .+.++...... +.+...-..|...+.+.|+.++|.+.++.+.. .+.+|+........+.+.+.|+.
T Consensus 465 ~e~A-~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEA-IEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHH-HHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 7777 56666666542 22344455666778888888888888887542 23445555555566667777777
Q ss_pred HHHHHHHHH
Q 006624 459 EAANELFLE 467 (638)
Q Consensus 459 ~~A~~~~~~ 467 (638)
++-..+-..
T Consensus 543 E~fi~t~~~ 551 (895)
T KOG2076|consen 543 EEFINTAST 551 (895)
T ss_pred HHHHHHHHH
Confidence 664444333
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-12 Score=119.13 Aligned_cols=450 Identities=12% Similarity=0.068 Sum_probs=329.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...|......-..++++..|..+|++...... .+...|.-.+..-+++.+++.|..++++.+..-| .-...|-..+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lP--RVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILP--RVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc--hHHHHHHHHH
Confidence 334455555555667788889999999887653 3777888888888999999999999999988654 2234555556
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..--..|++..|.++|++..+ ..|+..+|++.|+.-.+-+..+.|..+++..+-. .|++.+|.....--.+.|.+.
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 666678999999999999887 4799999999999999999999999999998764 589999999888888999999
Q ss_pred HHHHHHHHHHHcCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCChH---HHHH
Q 006624 319 DAYGLFMNMLKEGC--KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPA---SEAS 392 (638)
Q Consensus 319 ~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~---~a~~ 392 (638)
.|..+|+..++.-- .-+...+.+....-.++..++.|.-+|+-..+.-.+-. ...|..+...--+-|+.. +++.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv 304 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIV 304 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence 99999998877411 11233455555555667888999999988877432211 233444433333333322 2211
Q ss_pred ----HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHH-----HHH---HccCCH
Q 006624 393 ----AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA--AYCSLI-----NGY---GKAKRY 458 (638)
Q Consensus 393 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li-----~~~---~~~g~~ 458 (638)
--++.+...+ +-|-.+|--.++.-...|+.+...++|+..+.. +||-.. .|...| -++ ....+.
T Consensus 305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1123333332 456778888888888889999999999999976 455322 111111 111 346789
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 459 EAANELFLELKEYCGCSSARVYAV----MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
+.+.++++..++. +|....++.. ....-.++.++..|.+++..... ..|...++...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 9999999999984 5555555444 34444578899999999988775 468899999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 535 LRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEI-KPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 535 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
|++.++-+. -|..+|......-...|+.+.|..+|+-.++... ......|.+.|+-=...|.++.|..+++++++.
T Consensus 460 YEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 460 YEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 999999763 3788898888888899999999999999987532 223567888888888999999999999999864
Q ss_pred CCCHhhHHHH
Q 006624 614 EYDQITYSSI 623 (638)
Q Consensus 614 ~p~~~~~~~l 623 (638)
.+...+|-+.
T Consensus 537 t~h~kvWisF 546 (677)
T KOG1915|consen 537 TQHVKVWISF 546 (677)
T ss_pred cccchHHHhH
Confidence 2333345443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.5e-11 Score=117.31 Aligned_cols=454 Identities=12% Similarity=0.032 Sum_probs=228.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----hhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006624 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQI----KSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
+..-|+.|.+++..+.+. .+.++.+|.+-...--..|+.+...++..+- ...|+..+...|..=...+-..|..-
T Consensus 418 rLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 418 RLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChh
Confidence 334455555555555442 4555555555555555555555555554332 33355555555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 213 KIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
-+..+....+..|....| ..||..-...|.+.+.++-|..+|...++- ++-+...|...+..--..|..+.-..+|++
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqk 575 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQK 575 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 555555555544432122 234555555555555555555555555543 223444555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
....-+. ....|......+-..|++..|..++....+.... +...|-.-+.....+.+++.|..+|.+.... .|+.
T Consensus 576 av~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTe 651 (913)
T KOG0495|consen 576 AVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTE 651 (913)
T ss_pred HHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcc
Confidence 5554222 3444444455555556666666665555554333 4455555555555555666666666555442 2444
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPS-PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
..|.--+...-..+..+++ ..++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+. +|..+-.|..|..
T Consensus 652 Rv~mKs~~~er~ld~~eeA-~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLak 727 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEA-LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAK 727 (913)
T ss_pred hhhHHHhHHHHHhhhHHHH-HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHH
Confidence 4444443333333333333 4444444433 222 234555555556666666666555544433 2444445555555
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHH
Q 006624 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDD 530 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 530 (638)
.--+.|++-.|..+++...-. .+.+...|-..|.+-.+.|..+.|..++.+..+. ++.+...|..-|...-+.++-..
T Consensus 728 leEk~~~~~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTk 805 (913)
T KOG0495|consen 728 LEEKDGQLVRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTK 805 (913)
T ss_pred HHHHhcchhhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchH
Confidence 555555666666666655544 3345555666666666666666666555555443 23333444444443333333222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 531 AYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 531 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
....+++ +.-|+.....+...+-...++++|.+.|.+.+.. .|| -.+|..+..-+.+.|.-++-.++++...
T Consensus 806 s~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 806 SIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 2222221 2334455555555555555666666666665543 222 2345555555555665555555555554
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.3e-11 Score=111.80 Aligned_cols=456 Identities=13% Similarity=0.104 Sum_probs=340.6
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 180 (638)
+.+...|..+|.-+..-. ..+...|.-.+..=.++.++..|..+++..+.. -|.+ ..|...+-+--..|++..|.
T Consensus 86 q~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 455678888888776443 446778999999999999999999999999884 3333 45666667777789999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
++|++-.+. .|+..+|++.|+.-.+.+..+.|..+|++.+-. +|++.+|-.....-.+.|.+..|.++++..++.
T Consensus 162 qiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 162 QIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999998876 899999999999999999999999999999874 399999999999999999999999999998864
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC---HHHHHH-----HHHHHHH
Q 006624 261 -GL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-VYTYTELIKGLGRAGR---VEDAYG-----LFMNMLK 329 (638)
Q Consensus 261 -g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~---~~~A~~-----~~~~~~~ 329 (638)
|- ..+...+.+....-.++..++.|.-+|+-.++.=+.-. ...|..+...--+-|+ +++++- -|+.+++
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 21 11344566666666678889999999988887633211 3334444333333444 444432 3455555
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHH--------HHhcCChHHHHHHHHHHHH
Q 006624 330 EGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIKS--------LFESKAPASEASAWFEKMK 399 (638)
Q Consensus 330 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~--------~~~~~~~~~a~~~~~~~~~ 399 (638)
.++. |-.+|-..+..-...|+.+...++|+.+.. +++|-. ..|...|.. -....+.... .++++...
T Consensus 317 ~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ert-r~vyq~~l 393 (677)
T KOG1915|consen 317 KNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERT-RQVYQACL 393 (677)
T ss_pred hCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHH
Confidence 5443 777888888888889999999999999987 344422 123222221 1233444444 77777777
Q ss_pred hCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 006624 400 ANGVLPSPFTYSILIDGFC----KTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS 475 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 475 (638)
+ -++...+||..+.-.|+ ++.++..|.+++...+.. .|-..++...|..-.+.+++|.+..+++..++. .|.
T Consensus 394 ~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-~Pe 469 (677)
T KOG1915|consen 394 D-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-SPE 469 (677)
T ss_pred h-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-ChH
Confidence 6 35667788877766655 578899999999888754 788899999999999999999999999999997 456
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 476 SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 476 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
+..+|......-...|+.+.|..+|+-..+.. .......|.+.|+.-...|.+++|..+|+++++. .+...+|-++.
T Consensus 470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA 547 (677)
T KOG1915|consen 470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFA 547 (677)
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHH
Confidence 77888888888888999999999999988742 1223556777777778899999999999999985 34444666555
Q ss_pred HHHH-----hcC-----------CHHHHHHHHHHhhh
Q 006624 555 NGLA-----KSG-----------GPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~-----~~g-----------~~~~A~~~~~~m~~ 575 (638)
.--. +.| ....|..+|++...
T Consensus 548 ~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 548 KFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred HHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 4332 333 56678888888754
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.9e-12 Score=116.71 Aligned_cols=383 Identities=14% Similarity=0.078 Sum_probs=278.7
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--H
Q 006624 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT--E 306 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~ 306 (638)
.|...+-.....+-+.|..+.|+..|...... .+-.-.+|..|.... .+.+.+ ..... +...|...+. -
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHHH
Confidence 55555555666667788888888888887764 223334444443332 222222 22221 1111222222 2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhc
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFES 384 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~ 384 (638)
+..++-...+.+++.+-.+.....|.+-+...-+....+.....|+|+|..+|+++.+... --|..+|..++-..-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence 3456666678889999899998888876766666667777788999999999999988632 12556666665332221
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006624 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANEL 464 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 464 (638)
.. ..++.+-...--+-.+.|..++.+-|.-.++.++|...|+...+.+ |....+|+.+..-|....+...|.+.
T Consensus 313 sk-----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SK-----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HH-----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 11 1111111111112345677888899999999999999999999987 77788999999999999999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006624 465 FLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 544 (638)
++.+.+. .+.|-..|-.|.++|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|++....|-
T Consensus 387 YRrAvdi-~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d- 463 (559)
T KOG1155|consen 387 YRRAVDI-NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD- 463 (559)
T ss_pred HHHHHhc-CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-
Confidence 9999997 66789999999999999999999999999998864 55789999999999999999999999999998763
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 545 PDINSHNIILNGLAKSGGPKRAMEIFTKMQH----SEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
.+...+..|...+-+.++.++|..+|++-++ .|...+ .....-|..-+.+.+++++|..+....... .+...
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~e 541 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECE 541 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHH
Confidence 3678899999999999999999999998775 233322 222233666778899999999887777643 66777
Q ss_pred hHHHHHHHHhccC
Q 006624 619 TYSSILEAVGKVD 631 (638)
Q Consensus 619 ~~~~l~~~~~~~g 631 (638)
--+.|++.+.+..
T Consensus 542 eak~LlReir~~~ 554 (559)
T KOG1155|consen 542 EAKALLREIRKIQ 554 (559)
T ss_pred HHHHHHHHHHHhc
Confidence 7788888776654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.8e-11 Score=113.43 Aligned_cols=165 Identities=15% Similarity=0.107 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006624 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
...|+.+.+-|....+...|++-++...+.+ |.|-.+|..|.++|.-.+-..-|+-.|+++.+. -|.|...|.+|..+
T Consensus 364 ~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~C 441 (559)
T KOG1155|consen 364 LSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGEC 441 (559)
T ss_pred hHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHH
Confidence 4556667777788888888888888888876 778888888888888888888888888888875 56778888888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhc
Q 006624 487 FGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKS 560 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~ 560 (638)
|.+.++.++|+..|......| ..+...+..|...|-+.++.++|...|++-++. |...+ ...-.-|..-+.+.
T Consensus 442 Y~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~ 520 (559)
T KOG1155|consen 442 YEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKM 520 (559)
T ss_pred HHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhh
Confidence 888888888888888888765 235577888888888888888888888877652 32222 11222244555677
Q ss_pred CCHHHHHHHHHHhh
Q 006624 561 GGPKRAMEIFTKMQ 574 (638)
Q Consensus 561 g~~~~A~~~~~~m~ 574 (638)
+++++|..+.....
T Consensus 521 ~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 521 KDFDEASYYATLVL 534 (559)
T ss_pred cchHHHHHHHHHHh
Confidence 77777766554443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.9e-11 Score=113.74 Aligned_cols=288 Identities=11% Similarity=0.061 Sum_probs=219.1
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
.-+......-..-+...+++.+..++.+...+.. ++....+-.-|..+...|+..+- ..+=.++.+. .+....+|-+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~L-f~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKL-FLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchH-HHHHHHHHHh-CCCCCcchhh
Confidence 3455666666777788889999999999887743 34555566667777777776554 4444455544 3556788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
+.--|...|+.++|.+.|.+....+ +.-...|..+...|+-.|..|+|...+..+.+. .+-...-+--+.--|.+.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n 395 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNN 395 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhcc
Confidence 9988889999999999999887765 455678899999999999999999999888774 22222223334556778899
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC----CCHHHHHHHHHHHHhcCCHHHH
Q 006624 493 LSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCV----PDINSHNIILNGLAKSGGPKRA 566 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A 566 (638)
.+-|.++|.+..... +-|...++-+.-.....+.+.+|..+|+..+.. ... --..+++.|+.+|.+.+++++|
T Consensus 396 ~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA 474 (611)
T KOG1173|consen 396 LKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA 474 (611)
T ss_pred HHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence 999999999887753 456777777777777789999999999988732 011 1245688899999999999999
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 006624 567 MEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 567 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
+..+++..... +-|..++.++.-.|...|+++.|.+.|.+.+ .+.||..+.+.++..+..
T Consensus 475 I~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 475 IDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHH
Confidence 99999988753 3478889999999999999999999999988 778999888888876543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-12 Score=126.12 Aligned_cols=288 Identities=14% Similarity=0.119 Sum_probs=142.4
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVT-YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT--TLVSIYFKLGEVEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~--~li~~~~~~g~~~~ 284 (638)
.|++++|.+......+.. ++... |.....+..+.|+++.|.+.++++.+. .|+..... .....+...|++++
T Consensus 97 eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred CCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 677777776666654432 12222 323334446667777777777777654 34433222 33556666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHccCCHHHHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI-NVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~ 363 (638)
|.+.++++.+.++. +...+..+...|.+.|++++|.+++..+.+.+..+ ......+- .++
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-~~~~~~l~~~a~----------------- 232 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-EEHRAMLEQQAW----------------- 232 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHH-----------------
Confidence 77777776666544 55666666666666677777776666666654432 11111000 000
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 364 ALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 364 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
..++.......+ .+....+++.+... .+.++.....+...+...|+.++|..++++..+. ++++.
T Consensus 233 -----------~~l~~~~~~~~~-~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 233 -----------IGLMDQAMADQG-SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred -----------HHHHHHHHHhcC-HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 000000000000 01111111221111 1234455555666666666666666666666553 33332
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
.. ++.+....++.+++.+..+...+. .+.|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.
T Consensus 298 l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~ 372 (398)
T PRK10747 298 LV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD 372 (398)
T ss_pred HH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Confidence 11 122222335555555555555543 3344444555555555555555555555555543 355555555555555
Q ss_pred HcCCHHHHHHHHHHHH
Q 006624 524 RAGMIDDAYSLLRRME 539 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~ 539 (638)
+.|+.++|.+++++..
T Consensus 373 ~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 373 RLHKPEEAAAMRRDGL 388 (398)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-12 Score=113.05 Aligned_cols=300 Identities=13% Similarity=0.122 Sum_probs=222.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC-CCC--CHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK-CKP--TANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~ 202 (638)
..|..-++.+. +++.+.|.++|.+|.+.. +.+..+.-++.+.|.+.|.+++|+++...+.++. ... ...+...|.
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~ 114 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLG 114 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 34555555443 578899999999998853 4556777889999999999999999999988761 111 123455677
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHh
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT----AKIYTTLVSIYFK 278 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~ 278 (638)
.-|...|-+++|.++|..+.+.+. --......|+..|-+..++++|+++-+++.+.|-++. ...|.-|...+..
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 888899999999999999988654 4566788899999999999999999999888765443 2346667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006624 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 358 (638)
..+++.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++...+.++.--..+...|..+|.+.|+.++....
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 88899999999999887655 66666777888999999999999999999986665567788899999999999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006624 359 FNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT---NRVEKAHLLLEEMEE 435 (638)
Q Consensus 359 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~ 435 (638)
+..+.+.. +....-..+-.......+...+...+.+++.. .|+...+..+++..... |...+-+.+++.|..
T Consensus 272 L~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 272 LRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 99887754 34444444444444445555553444444444 58888888888765433 345555566666654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-11 Score=116.28 Aligned_cols=423 Identities=13% Similarity=0.025 Sum_probs=241.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+....+-+.++|.+++|++.|...+. +.|+ +.-|.....+|...|++++..+.-.+..+.++. -+..+..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHH
Confidence 455566778889999999999999988 5666 777888888889999999999988888877433 345666677777
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCCH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
-+.|++++|+.-..-..-.+.. .|..+--.+=+.+-+ .|....++-.+ .+ +-|+.....+....+-..-
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~-- 265 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP-- 265 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--
Confidence 7888888876544333222221 222211111111111 12222222222 22 2233333333222221100
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc---CCCC---C------HHHHHHHHHHHHcc
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKE---GCKP---D------IVLINNLINVLGRA 349 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~p---~------~~~~~~l~~~~~~~ 349 (638)
...+...+..-|...-..+-..+.. ...+..|...+.+-... .... | ..+...-...+.-.
T Consensus 266 ------~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~ 339 (606)
T KOG0547|consen 266 ------KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLK 339 (606)
T ss_pred ------cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhc
Confidence 0000000000011000000000000 11233333333222111 0000 1 11122222223445
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
|+.-.|..-|+...+....++.. |-.+-..|....+..+. +..|....+-+ +-|+.+|..-.+.+.-.+++++|..=
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~-~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKM-WKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHH-HHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 77778888888877755433331 44444445555555444 67777766653 33556676667777777888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
|++.++.. |.+...|..+.-+..+.++++++...|++.++. .|..+.+|+.....+..++++++|.+.|+...+..
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE-- 492 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE-- 492 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc--
Confidence 88888775 666677777777777888888888888888876 66677888888888888888888888888877642
Q ss_pred CC-------HhhH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 510 PD-------VYTY--NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 510 p~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|+ ..++ ..++. +--.+++..|..++.++++...+ ....|..|...-.+.|+.++|+++|++...
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32 1111 11111 11347888888888888875322 355677788888888888888888887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.8e-12 Score=126.71 Aligned_cols=292 Identities=14% Similarity=0.065 Sum_probs=155.9
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA--KIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~ 283 (638)
...|+++.|.+.+.+..+..+ .....+-....+..+.|+.+.|.+.+++..+.. |+. .........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~--~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAA--EPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 457888888888877766542 223444455666777788888888888776643 333 33444567777778888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN-VLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~ 362 (638)
.|.+.++.+.+..+. +...+..+...+...|++++|.+.++.+.+.+.. +...+..+-. ++ .+ .++..
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~--~~-------~l~~~ 239 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE--IG-------LLDEA 239 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH--HH-------HHHHH
Confidence 888888777777654 5666777777777777777777777777776543 2222211111 00 00 00000
Q ss_pred HHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 363 EALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG---VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFP 439 (638)
Q Consensus 363 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 439 (638)
...+. ...+..+.... .+.+...+..+...+...|+.++|.+++++..+.. +
T Consensus 240 -----------------------~~~~~-~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-p 294 (409)
T TIGR00540 240 -----------------------MADEG-IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-G 294 (409)
T ss_pred -----------------------HHhcC-HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-C
Confidence 00000 01111111111 11356667777777888888888888888877764 2
Q ss_pred CCHhhHHHHHH--HHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 440 PCPAAYCSLIN--GYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 440 ~~~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
.+......++. .....++.+.+.+.++...+. .+.|. .....+...+.+.|++++|.+.|+........|+...+
T Consensus 295 d~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 295 DDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 22211100111 112234455555555554443 22333 34444555555555555555555532222223444444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006624 516 NALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~ 538 (638)
..+...+.+.|+.++|.++|++.
T Consensus 374 ~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 374 AMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 45555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.3e-11 Score=114.67 Aligned_cols=419 Identities=15% Similarity=0.081 Sum_probs=264.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..+-|.+.|++++|++.|.+.++. .|+ +.-|.....+|...|+++++.+.-.+.++.++ .-+..+..-.+++-+.
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P--~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP--DYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc--HHHHHHHHHHHHHHhh
Confidence 347788999999999999999987 566 78888899999999999999999999988764 3455666677788888
Q ss_pred CChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC--CCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 245 GRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG-KG--CALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 245 g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~--~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
|++++|+.=..-..= .|+. |..+ ..+++-..+. .|....++-.. .+ +-|+.....+....+-..-.
T Consensus 197 g~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~---- 266 (606)
T KOG0547|consen 197 GKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKK----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK---- 266 (606)
T ss_pred ccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHH----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc----
Confidence 888887653322211 1111 1111 1111111111 12222222222 22 22444333333332211000
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHHC-CCCCCHh---------HHHHHHH--HHHhcCCh
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRA-GRLEDALKLFNKMEAL-QCKPNVV---------TYNTVIK--SLFESKAP 387 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-~~~p~~~---------~~~~ll~--~~~~~~~~ 387 (638)
..+...+...|...-..+-..+... ..+..|...+.+-... ...++.. .-..++. ..+-.|+.
T Consensus 267 ----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 267 ----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence 0000000000111111111111110 1122222222211000 0001100 1111111 12345666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 006624 388 ASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 388 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
..+ ..-|+..+.....++. .|-.+...|.+.++.++....|++....+ +.++.+|..-.+.+.-.+++++|..-|++
T Consensus 343 ~~a-~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 343 LGA-QEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred hhh-hhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 666 7777888776433332 37777788999999999999999999987 88889999999999999999999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---
Q 006624 468 LKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV--- 544 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 544 (638)
.... .+.+...|-.+..+..+.+++++++..|++.++. ++.-...|+.....+...+++++|.+.|+..++....
T Consensus 420 ai~L-~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~ 497 (606)
T KOG0547|consen 420 AISL-DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHL 497 (606)
T ss_pred Hhhc-ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccc
Confidence 9986 4456777888888888999999999999999876 4555788999999999999999999999999974211
Q ss_pred --CCHHHH--HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 545 --PDINSH--NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 545 --p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
.+...+ -.++. +.-.+++..|.+++++..+...+ ....|.+|...-.+.|+.++|+++|++..
T Consensus 498 ~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 498 IIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 122211 11221 12348999999999999965322 35678899999999999999999999865
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-11 Score=124.35 Aligned_cols=290 Identities=11% Similarity=0.017 Sum_probs=138.4
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
..|+++.|.+.+.+..+.... ....+-....+..+.|++++|.+.+++..+..+. ++..........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHHHHHHCCCHHHHH
Confidence 345566666655555444211 1222333345555556666666666665543321 11122233355555566666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH---HHHHhcCCHHHHHHHHHHH
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT-ELI---KGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~-~li---~~~~~~g~~~~A~~~~~~~ 327 (638)
+.++.+.+.. +-+..++..+...+...|++++|.+.+..+.+.+.. +...+. .-. ......+..+++.+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 6666665543 224455556666666666666666666666655433 222221 111 1112222222233344444
Q ss_pred HHcCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH--HHHHHH-HHhcCChHHHHHHHHHHHHhC
Q 006624 328 LKEGCK---PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY--NTVIKS-LFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 328 ~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~ll~~-~~~~~~~~~a~~~~~~~~~~~ 401 (638)
.+..+. .+...+..++..+...|+.++|.+++++..+.. ||.... ..+... ....++. ..+...++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~-~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDN-EKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCCh-HHHHHHHHHHHHh
Confidence 433221 266667777777777777777777777776643 333210 111111 1111222 2223333333332
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 402 GVLPSP--FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELK 469 (638)
Q Consensus 402 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 469 (638)
.+-|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++..
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11122 33445555666666666666666632222224555555566666666666666666665543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=138.75 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=60.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKG-FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 491 (638)
++..+.+.++++++..+++.+.... .+.++..|..+...+.+.|+.++|.+.++++.+. .|.|....+.++..+...|
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~P~~~~~~~~l~~~li~~~ 194 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL-DPDDPDARNALAWLLIDMG 194 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHCC
Confidence 3333444444444444444433211 1233344444444444444444444444444443 2223444444444444455
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+.+++..+++...+.. +.|...+..+..++...|+.++|+..|++..+.. +.|......+..++...|+.++|.++.+
T Consensus 195 ~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 195 DYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred ChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 5554444444443321 2233344455555555555555555555555431 2244455555555555555555555554
Q ss_pred Hh
Q 006624 572 KM 573 (638)
Q Consensus 572 ~m 573 (638)
+.
T Consensus 273 ~~ 274 (280)
T PF13429_consen 273 QA 274 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.4e-11 Score=121.61 Aligned_cols=283 Identities=11% Similarity=0.034 Sum_probs=145.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH--HHHHHHHHhcCCHhHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEI-VNILGKAKMVNKALSIFYQIKSRKCKPTANTY--NSMILMLMQEGYYEKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A 214 (638)
.|+++.|.+.+....+. .+++..+..+ ..+..+.|+++.|...|.++.+. .|+.... ......+...|++++|
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 46666666655554332 2223333333 33335666666666666666554 2232211 1224555666666666
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA-------KIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~ 287 (638)
.+.++++.+..+ .+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 173 l~~l~~~~~~~P--~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 173 RHGVDKLLEVAP--RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 666666666554 34555566666666666666666666666655432111 111222222222223333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC 367 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 367 (638)
+++.+...- +.++.....+...+...|+.++|..++++..+. .||.... ++.+....++.+++.+..+.
T Consensus 251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~------ 319 (398)
T PRK10747 251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQ------ 319 (398)
T ss_pred HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHH------
Confidence 333332211 123444444444444444444444444444442 1222111 11122223444444444443
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCS 447 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 447 (638)
..+.. +-|...+..+...+.+.+++++|.+.|+.+.+. .|+...+..
T Consensus 320 ------------------------------~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~ 366 (398)
T PRK10747 320 ------------------------------QIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAW 366 (398)
T ss_pred ------------------------------HHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 33321 334555667777777888888888888877765 577777777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 006624 448 LINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+...+.+.|+.++|.+++++...
T Consensus 367 La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888888888887777654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.9e-14 Score=137.47 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=84.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
.+...+.+.|++++|++++.+..... ...+..-|..+.......++++.|.+.|+++...+. -+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc-cc
Confidence 44555666666666666664433332 122444444455555556666666666666666543 234445555555 56
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
.+++++|.++++...+.. ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555432 445555666666666666666666666655432 23355566666666666777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 402 (638)
.+++.++..+. |....+.++..+...|+.+++.++++...+..
T Consensus 168 ~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~------------------------------------ 210 (280)
T PF13429_consen 168 DYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA------------------------------------ 210 (280)
T ss_dssp HHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC------------------------------------
Confidence 77666665332 45566666666666666666666655543311
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 403 VLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 403 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+.|+..+..+..++...|+.++|+.++++..+.. +.|+.....+.+++...|+.++|.++..++.+
T Consensus 211 -~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 211 -PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred -cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 2233455666777777788888888888777754 66777777777778788887777777766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.9e-10 Score=110.78 Aligned_cols=284 Identities=14% Similarity=0.081 Sum_probs=194.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+......-.+-+...+++.+...+++...+..+ +....+..-|.++...|+..+-..+=.++.+.- +....+|-.+--
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 445555555666677777777777777776532 244444444556666776666555555555533 224556666655
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
-|...++..+| +.+|.+...-.. .=...|-.....|.-.|.-++|+..+..+-+.- +-..--+.-+.--|.+.++++
T Consensus 321 YYl~i~k~seA-Rry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 321 YYLMIGKYSEA-RRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHhcCcHHH-HHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHH
Confidence 55566666666 666666554321 113467777788888888888888887776541 222223334455677888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCHhhHHHHHHHHHHcCCHHHHHH
Q 006624 460 AANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL----R--CKPDVYTYNALMSGMVRAGMIDDAYS 533 (638)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 533 (638)
-|.+.|.++... .|.|+.+.+.+.-.....+.+.+|...|+..... + ..-...+++.|.++|.+.+++++|+.
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 888888888876 5567778888887777788888888888876521 0 11245678888999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 006624 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCL 592 (638)
Q Consensus 534 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 592 (638)
.+++.+... +-|..++.++.-.|...|+++.|.+.|.+.. .+.||..+-..++..+
T Consensus 477 ~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 477 YYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHH
Confidence 999988863 4478888888888999999999999999887 5678876666666543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-10 Score=104.08 Aligned_cols=453 Identities=12% Similarity=0.073 Sum_probs=265.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+.-+..++++..|+.+++--...+-.....+-.-+..++...|++++|...|.-+... -.++...+-.+...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 3444556667777776665443322222223333455667788888888888877664 345666666677777777888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
.+|..+-.+.. .+...-..+++..-+.|+-++-..+.+.+.+ ...---+|.......-.+.+|++++..
T Consensus 108 ~eA~~~~~ka~------k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 108 IEAKSIAEKAP------KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHhhCC------CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 88877755542 2333344555666677777777777766654 223344566666666678888888888
Q ss_pred HHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006624 292 MKGKGCALTVYTYTE-LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 292 m~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
....+ |+-...|. +.-+|.+..-++-+.++++-.++. ++.++...|..+....+.=.-..|..-.+.+.+.+-.
T Consensus 177 vL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-- 251 (557)
T KOG3785|consen 177 VLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-- 251 (557)
T ss_pred HHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc--
Confidence 87753 23334443 334566777777777777777665 2223444454444333332222233333333322110
Q ss_pred HhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 371 VVTYNTVIKSLFESK-----APASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAY 445 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 445 (638)
. --.+.-+++.+ +-+.+ .+++-.+.+. .| ..-..++--|.+.+++.+|..+.+++. |.++.-|
T Consensus 252 ~---~~f~~~l~rHNLVvFrngEgA-LqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Ey 319 (557)
T KOG3785|consen 252 E---YPFIEYLCRHNLVVFRNGEGA-LQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEY 319 (557)
T ss_pred c---chhHHHHHHcCeEEEeCCccH-HHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChHHH
Confidence 0 01112222221 11122 3333333221 12 233345566888999999998877664 3333333
Q ss_pred HHHHHHHHcc-------CCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 446 CSLINGYGKA-------KRYEAANELFLELKEYCGCSSA-RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 446 ~~li~~~~~~-------g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
..-.-.+... ....-|...|+..-+.+...|. .--..+..++.-..++++.+..++.+..--...|.+.+|
T Consensus 320 ilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N- 398 (557)
T KOG3785|consen 320 ILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN- 398 (557)
T ss_pred HHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-
Confidence 2222223333 3455666666665554444332 223455666666778889998888887765455565555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhc
Q 006624 518 LMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH-NIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAV-SYNTILGCLSRA 595 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~ 595 (638)
+..+++..|++.+|+++|-+.....++ |..+| ..|.++|.+.++++-|++++-++-. ..+.. ....+..-|.+.
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHH
Confidence 678888999999999999877765555 45555 4566788899999999888776643 22333 344556778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 596 GMFEEAARLMKDMNAKGFEYDQITY 620 (638)
Q Consensus 596 g~~~~A~~~~~~m~~~~~~p~~~~~ 620 (638)
+.+=-|.+.|+.+.. ..|++.-|
T Consensus 475 ~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHHHhhhHHHc--cCCCcccc
Confidence 888888888887774 45666544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-12 Score=126.11 Aligned_cols=284 Identities=12% Similarity=0.035 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
..+|+..|...... +.-...+...+..+|...+++++|.++|+.+.+... .-+...|.+.+--+- +..+- -.+
T Consensus 335 ~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~v~L-s~L 409 (638)
T KOG1126|consen 335 CREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DEVAL-SYL 409 (638)
T ss_pred HHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hhHHH-HHH
Confidence 45566666663332 222234445556666666666666666666654321 113344444442221 11111 111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
-+.+.+. -+-.+.+|.++.++|.-+++.+.|++.|++..+.+ +....+|+.+..-+.....+|.|...|+.++.. .+
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-DP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC-Cc
Confidence 1222322 24467899999999999999999999999999886 668899999999999999999999999999874 23
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
.+-..|-.+...|.++++++.|.-.|++..+.+ +-+.+....+...+.+.|+.++|+.+++++.....+ |+..--..+
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 344455567888999999999999999999865 345667777788888999999999999999986544 444444566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
..+...+++++|+..++++++. .|+ ...|..+...|.+.|+.+.|+.-|--|.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 7788899999999999999964 555 5678889999999999999999998888543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-10 Score=106.99 Aligned_cols=286 Identities=14% Similarity=0.134 Sum_probs=155.8
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|+|.+|..+..+..+.+. .-...|..-..+.-+.|+.+.+-+++.+.-+.--.++...+-+........|+++.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 5777777777777655543 33445555556666667777777777776665323455556666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHccCCHHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIV-------LINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
-+.++.+.++. +........++|.+.|++.+...++..+.+.|.--|.. +|+.+++-....+..+.-
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL----- 248 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGL----- 248 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHH-----
Confidence 66666666554 55566666666666666666666666666665543332 122222221111111111
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
..+++..... .+-++..-..++.-+.+.|+.++|.++.++..+++..+
T Consensus 249 -------------------------------~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~ 296 (400)
T COG3071 249 -------------------------------KTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP 296 (400)
T ss_pred -------------------------------HHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh
Confidence 1122222111 12234444555566666677777777766666665444
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 441 CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMS 520 (638)
Q Consensus 441 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 520 (638)
. .. ..-.+.+-++.+.-.+..+...+. .+.++..+..|...|.+.+.+.+|...|+...+. .|+..+|+.+.+
T Consensus 297 ~---L~-~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~ 369 (400)
T COG3071 297 R---LC-RLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELAD 369 (400)
T ss_pred h---HH-HHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHH
Confidence 3 11 112233445555555555554443 3334455556666666666666666666655543 356666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 006624 521 GMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 521 ~~~~~g~~~~A~~~~~~~~~ 540 (638)
++.+.|+..+|.++.++...
T Consensus 370 ~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 370 ALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHcCChHHHHHHHHHHHH
Confidence 66666666666666555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.4e-08 Score=99.41 Aligned_cols=400 Identities=13% Similarity=0.169 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC------CCCCHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK------CKPTANTYN 199 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~ 199 (638)
..|...++-....+.+.-+.+++++.++ .+|..-+-.+..+.+.+++++|.+.+..+.... .+.+-..|.
T Consensus 139 rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 139 RIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred cchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 3444444444444444444444444433 122234444455555555555555554443221 122233333
Q ss_pred HHHHHHHhcCCHh---HHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 200 SMILMLMQEGYYE---KIHELYNEMCNEGNCFPD--TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 200 ~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
-+-+...++-+.- ..-+++..+.... +| ...|.+|.+.|.+.|.+++|..++++.+.. ..++.-|..+.+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rf---tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd 289 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRF---TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFD 289 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccC---cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHH
Confidence 3333333322211 1122223332221 22 234788888888888888888888887764 223334444444
Q ss_pred HHHhc----------------CC------HHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 275 IYFKL----------------GE------VEKALGLVQEMKGKGC-----------ALTVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 275 ~~~~~----------------g~------~~~A~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~ 321 (638)
.|..- |+ ++-...-|+.+...++ +.++..|..-.. +..|+..+-.
T Consensus 290 ~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i 367 (835)
T KOG2047|consen 290 AYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQI 367 (835)
T ss_pred HHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHH
Confidence 44321 11 2222233333332210 113333433222 2356677777
Q ss_pred HHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC---HhHHHHHHHHHHhcCChHHHHH
Q 006624 322 GLFMNMLKEGCKP------DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN---VVTYNTVIKSLFESKAPASEAS 392 (638)
Q Consensus 322 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~ 392 (638)
..|.++++. +.| -...|..+...|-..|+++.|..+|++..+...+.- ..+|-.-...-.+..+...+ .
T Consensus 368 ~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~A-l 445 (835)
T KOG2047|consen 368 NTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAA-L 445 (835)
T ss_pred HHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHH-H
Confidence 777777764 111 234577778888888888888888888766432211 11222222222233333322 4
Q ss_pred HHHHHHHhCCCC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc
Q 006624 393 AWFEKMKANGVL-----------------PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA 455 (638)
Q Consensus 393 ~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 455 (638)
.+.+....-.-. -+...|+..++.--..|-++....+|+.+++..+ .++.........+-..
T Consensus 446 ~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~NyAmfLEeh 524 (835)
T KOG2047|consen 446 KLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINYAMFLEEH 524 (835)
T ss_pred HHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhh
Confidence 433333221000 1223456666666667788888888888877653 3344333334444555
Q ss_pred CCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCCHH
Q 006624 456 KRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKC---GRLSDAVDLFNEMKKLRCKPDVYTYNALMSG--MVRAGMID 529 (638)
Q Consensus 456 g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~ 529 (638)
.-++++.+++++-...-..|+ ...|+.-+.-+.+. ..++.|..+|++..+ |++|...-+-.|+.+ --+.|-..
T Consensus 525 ~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 525 KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHH
Confidence 566777777766555433333 23455555444432 356777777777777 556554333333222 12456666
Q ss_pred HHHHHHHHHHH
Q 006624 530 DAYSLLRRMEE 540 (638)
Q Consensus 530 ~A~~~~~~~~~ 540 (638)
.|+++++++..
T Consensus 604 ~amsiyerat~ 614 (835)
T KOG2047|consen 604 HAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHh
Confidence 77777776554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.8e-11 Score=121.08 Aligned_cols=220 Identities=17% Similarity=0.162 Sum_probs=129.2
Q ss_pred hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 006624 116 GRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
.+..|..|+.+||..+|..|+..|+.+.|- +|.-|.-...+.+...|+.++....++++.+.+. .|.+
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 346788899999999999999999999888 8888877777788888888888888888777766 5688
Q ss_pred HHHHHHHHHHHhcCCHhH---HHHHHHHHHh----CCCCCCCHHHH-------------HHHHHHHHccCChHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEK---IHELYNEMCN----EGNCFPDTVTY-------------SALISAFGKLGRDISAIRLFD 255 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~---A~~~~~~~~~----~~~~~~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~ 255 (638)
.+|..|..+|...|+... +.+.++.+.. .|...|....+ ...+.-..-.|-++.+++++.
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~ 163 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA 163 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888888888543 3322222211 11110111000 111111122222222222222
Q ss_pred HHH-----------------------------HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 256 EMK-----------------------------ENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 256 ~m~-----------------------------~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
.+. +.+. .|+..+|..+++.-..+|+.+.|..++.+|.+.|++.+.+.|-
T Consensus 164 ~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 164 KVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred hCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 111 1111 2555566666666666666666666666666666555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
.|+-+ .++..-+..++.-|.+.|+.|+..|+...+-.+.++|
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 44433 5555555555555666666666666555554444433
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.3e-09 Score=102.15 Aligned_cols=425 Identities=16% Similarity=0.204 Sum_probs=239.5
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
.+...|+-++|......-++.+ ..+...|..+.-.+....++++|++.|......+.. |...|.-+.-.-++.|+++-
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhh
Confidence 3445566666666666655532 333444555555555556777777777766665433 56666666655666666666
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHhcCCHHHHH
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG-LQPTAKIYTTLV------SIYFKLGEVEKAL 286 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~ 286 (638)
..+.-....+..+ .....|..+..+..-.|+...|..++++..+.. -.|+...|.... ....+.|.+++|+
T Consensus 128 ~~~tr~~LLql~~--~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~al 205 (700)
T KOG1156|consen 128 YLETRNQLLQLRP--SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKAL 205 (700)
T ss_pred HHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 6666666666543 445566666666666677777777777666542 134444443322 2334566677776
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHccCCHHHHH-HHHHHHHH
Q 006624 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-NLINVLGRAGRLEDAL-KLFNKMEA 364 (638)
Q Consensus 287 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~-~~~~~~~~ 364 (638)
+.+..-... +.-....-..-...+.+.+++++|..++..++... ||..-|. .+..++.+-.+.-++. .+|....+
T Consensus 206 e~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 206 EHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 666554332 11012222234456677777888888877777763 4444443 3334443333333333 55555433
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC---
Q 006624 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME----EKG--- 437 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~--- 437 (638)
.- |....-..+--..............++..+.+.|+++- +..+...|-.....+-..++.-.+. ..|
T Consensus 283 ~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~ 357 (700)
T KOG1156|consen 283 KY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFN 357 (700)
T ss_pred cC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCC
Confidence 21 11111111111112223334445666677777776543 2333332222111111111111111 110
Q ss_pred -------CCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 438 -------FPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRC 508 (638)
Q Consensus 438 -------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 508 (638)
-+|... ++..++..+-+.|+++.|...++.+..+ .|.-+..|..=.+.+...|++++|...+++..+..
T Consensus 358 ~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH-TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 358 FLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH-TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred cccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc-CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 144444 3445677888899999999999998875 33335566666788889999999999999998865
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHHhcCCHHHHHHHHHHhh
Q 006624 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINS--------HNII--LNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--------~~~l--~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.+|...-.--..-..++.+.++|.++.....+.|. +... |-.+ ..+|.+.|++..|++-|..+.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 45655544556667788999999999988888764 2221 2111 345777888877877666654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.2e-09 Score=102.73 Aligned_cols=462 Identities=14% Similarity=0.158 Sum_probs=312.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
|-.++++| ..+++....++.+..++. .+....+.....-.+...|+-++|..........++. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33444443 567888888888888773 3445556655555667789999999998888776544 78889999988888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
..++++|++.|..+...++ .|...+.-+.-.-++.|+++.....-.+..+.. +.....|..++.++.-.|++..|..
T Consensus 88 dK~Y~eaiKcy~nAl~~~~--dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEK--DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 788888888888888899998888888777752 3356678889999999999999999
Q ss_pred HHHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHccCCHHHHHHHH
Q 006624 288 LVQEMKGKG-CALTVYTYTELI------KGLGRAGRVEDAYGLFMNMLKEGCKPDIVL-INNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 288 ~~~~m~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~ 359 (638)
++++..+.. -.|+...|.... ....+.|..++|++.+..-... + .|... -..-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 999998764 245666555432 3456788888888877665443 1 13333 334566788999999999999
Q ss_pred HHHHHCCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 360 NKMEALQCKPNVVTYNTVIKSLF-ESKAPASEASAWFEKMKANGVLPSPFTYSI-LIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 360 ~~~~~~~~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~ 437 (638)
..+...+ ||...|+..+..+. .-.+..++...++....+.- |....-.. -++......-.+..-.++..+.+.|
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC--cccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 9999865 88888877776655 34455555445666655431 11111111 1111111222334455667777888
Q ss_pred CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH----cC----------CCCcHH--HHHHHHHHHHhcCCHHHHHHHHH
Q 006624 438 FPPCPAAYCSLINGYGKAKRYEAANELFLELKE----YC----------GCSSAR--VYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 438 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+++ ++..+...|-.-...+-..++...+.. .+ -+|... ++-.++..|-+.|+++.|...++
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 344444444332222211222222211 10 134443 34567888999999999999999
Q ss_pred HHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 006624 502 EMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP 580 (638)
Q Consensus 502 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 580 (638)
..... .|+ +..|..-...+...|++++|...+++..+.. .||...-.--..-..++...++|.++.....+.|.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~-- 470 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF-- 470 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--
Confidence 99875 355 3445555677889999999999999999864 34554443455666788999999999999988664
Q ss_pred CHH--------HHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006624 581 DAV--------SYNTI--LGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 581 ~~~--------~~~~l--~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+.. .|-.+ ..+|.+.|++..|++=|....
T Consensus 471 ~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 471 GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 222 22222 456788888888776555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.8e-10 Score=101.76 Aligned_cols=287 Identities=15% Similarity=0.104 Sum_probs=211.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
-.|++.+|+++..+-.+.+.. ....|..-+++--+.|+.+.+-.+..++.+..+. ++...+-+........|+++.|.
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhHH
Confidence 369999999999998887644 3445666667778899999999999999887433 66777788888999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV-------YTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
.-++++.+.+ +.+.........+|.+.|++.....++.++.+.|.--+. .+|..+++-....+..+.-...|
T Consensus 174 ~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 174 ENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999875 447888999999999999999999999999999876553 46677777776677777766777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 006624 325 MNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (638)
++..+. ...++..-..++.-+.+.|+.++|.++.++..+.+..|+.. .++ ...+-++...-....-......+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~---~~~-~~l~~~d~~~l~k~~e~~l~~h~~- 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC---RLI-PRLRPGDPEPLIKAAEKWLKQHPE- 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH---HHH-hhcCCCCchHHHHHHHHHHHhCCC-
Confidence 776554 44467777888999999999999999999998877666522 122 223444444432222233333333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 405 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
++..+.+|...|.+.+.+.+|...|+...+. .|+..+|..+.+++.+.|+..+|.++.++...
T Consensus 327 -~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 -DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred -ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3356666777777777777777777766554 56666777777777777777777766666553
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-12 Score=123.24 Aligned_cols=285 Identities=16% Similarity=0.116 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHccCChHHHHHH
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
+..+|...|..+...-.. +......+.++|...+++++|.++|+.+.+..+.. .+...|.+.+--+-+. -++.+
T Consensus 334 ~~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 344555555554443221 33444455556666666666666666655544321 2334444444332211 11111
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 254 FD-EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 254 ~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+. .+.+. -+-.+.+|..+.++|.-+++.+.|++.|+...+.++. ...+|+.+.+-+.....+|.|...|+..+....
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 11 11111 1223445555555555555555555555555544322 444555555555555555555555554443211
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
. +-.+|.-+...|.+.++++.|.-.|+++.+.+ | .+.+....
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN--P-----------------------------------~nsvi~~~ 528 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN--P-----------------------------------SNSVILCH 528 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC--c-----------------------------------cchhHHhh
Confidence 1 11122223344445555555544444443322 1 12223333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
+...+.+.|+.++|+++++++...+ +.|+..-...+..+...+++++|...++++++. .+.+..++..+...|-+.|+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHcc
Confidence 4444555666666666666665554 444444444455555556666666666666554 33445555555666666666
Q ss_pred HHHHHHHHHHHHhC
Q 006624 493 LSDAVDLFNEMKKL 506 (638)
Q Consensus 493 ~~~A~~~~~~m~~~ 506 (638)
.+.|+.-|.-+.+.
T Consensus 607 ~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 607 TDLALLHFSWALDL 620 (638)
T ss_pred chHHHHhhHHHhcC
Confidence 66666665555543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-10 Score=101.87 Aligned_cols=120 Identities=15% Similarity=0.203 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHccCChHHH
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD---TVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 250 (638)
.+.++|.++|-+|.+.... +..+.-+|.+.|-+.|..++|+.+.+.+.+.... +. ......|..-|...|-+|.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdl-T~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDL-TFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCC-chHHHHHHHHHHHHHHHHhhhhhHH
Confidence 3455555555555553221 3444445555555555555555555555543111 11 11223334444455555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 251 IRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
.++|..+.+.| ..-......|+..|-+..+|++|+++-+++...+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 55555554432 1223344444555555555555555555444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-09 Score=98.72 Aligned_cols=433 Identities=16% Similarity=0.137 Sum_probs=274.5
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
.-+....++..|+.+++--...+-+-...+-..+...+...|++++|...|..+..... ++...+..|.-.+.-.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHH
Confidence 44555678888888887765443332223334456777889999999999999988655 6777777777777778889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
.+|.++-++..+ ++-.-..|.+...+.++-++-..+.+.+... ...-.+|.......-.+++|+++|...
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999887665432 4455556677777888888877777666542 233445556666667899999999999
Q ss_pred HHcCCCCCHHHHHH-HHHHHHccCCHHHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006624 328 LKEGCKPDIVLINN-LINVLGRAGRLEDALKLFNKMEALQCKPNV-VTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 328 ~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (638)
+..+ |+-...|. +.-+|.+..-++.+.++++-....- ||+ ...|......++.-+...+ +.-...+.+++...
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdStiA~NLkacn~fRl~ngr~a-e~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTIAKNLKACNLFRLINGRTA-EDEKKELADNIDQE 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHHHHHHHHHHHhhhhccchh-HHHHHHHHhccccc
Confidence 8763 34444443 4456788888899999988877633 444 4444444444433222222 22223444433211
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHH-
Q 006624 406 SPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARV- 479 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~- 479 (638)
| ..+.-.++. .+-+.|++++--+.+. -+.+-..|+-.|.+.+++.+|..+..++... .|-...
T Consensus 253 ----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~Eyil 321 (557)
T KOG3785|consen 253 ----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYIL 321 (557)
T ss_pred ----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHH
Confidence 1 122223332 3457788888776653 2345566777899999999999988776431 122222
Q ss_pred ----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 480 ----YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV-YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 480 ----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
+..+..-......+.-|...|.-.-..+..-|. .--.++..++.-..++++.+.+++....--...|...+ .+.
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHH
Confidence 112222222223455677777766555443332 22345556666677889999999888875333334443 578
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHhccCC
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN-TILGCLSRAGMFEEAARLMKDMNAKGFEYDQI-TYSSILEAVGKVDE 632 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~ 632 (638)
.+.+..|.+.+|.++|-++....++ |..+|. .+.++|.+.|+++-|..++-++ +.+.+.. ....+.+-|.+.++
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988765554 555665 6678999999999997776655 3333333 34445566776665
Q ss_pred c
Q 006624 633 D 633 (638)
Q Consensus 633 ~ 633 (638)
+
T Consensus 477 F 477 (557)
T KOG3785|consen 477 F 477 (557)
T ss_pred H
Confidence 4
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-09 Score=103.32 Aligned_cols=420 Identities=15% Similarity=0.161 Sum_probs=227.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH--HHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA--LIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--l~~ 239 (638)
...+=++.+...|++++|.....++...+ +.+...+..-+.++++.++|++|+.+.+.-.. ..+++. +=.
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~-------~~~~~~~~fEK 85 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA-------LLVINSFFFEK 85 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch-------hhhcchhhHHH
Confidence 33444567778888999999998888876 33677777778888889999998865554321 111222 345
Q ss_pred HHH--ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcC
Q 006624 240 AFG--KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG-LGRAG 315 (638)
Q Consensus 240 ~~~--~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g 315 (638)
+|| +.+..++|+..++ |..+ |..+...-...+.+.|++++|+++|+.+.+.+.. + +...+.+ +...+
T Consensus 86 AYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~ 156 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVA 156 (652)
T ss_pred HHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHH
Confidence 555 6788899988887 3333 3446666777888999999999999999877543 2 2222111 11111
Q ss_pred CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 006624 316 RVEDAYGLFMNMLKEGCKP--DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASA 393 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 393 (638)
- +... +.+......| +-..+-.....+...|++.+|+++++.....+.+ .+. .++..+ +.
T Consensus 157 a---~l~~-~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e-----------~l~-~~d~~e--Ee 218 (652)
T KOG2376|consen 157 A---ALQV-QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICRE-----------KLE-DEDTNE--EE 218 (652)
T ss_pred H---hhhH-HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-----------hhc-ccccch--hh
Confidence 0 1111 0122222222 1222233455667889999999999988432110 000 011000 00
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHH----------------
Q 006624 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAA----YCSLINGYG---------------- 453 (638)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~li~~~~---------------- 453 (638)
+-.++ ++ .-..+.-.+-..|+.++|..++...++.. ++|... .+.|+..-.
T Consensus 219 ie~el-------~~-IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 219 IEEEL-------NP-IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred HHHHH-------HH-HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 00000 00 11123333445566666666666555554 222211 111111100
Q ss_pred -----------------------------ccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh--cCCHHHHHHHHHH
Q 006624 454 -----------------------------KAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGK--CGRLSDAVDLFNE 502 (638)
Q Consensus 454 -----------------------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~ 502 (638)
-.+..+.+.++..... +..|. ..+..++....+ ...+.+|..++..
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~ 366 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQ 366 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 0111111111111111 11122 223333332222 2245667777776
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR--------RMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.-+..-.......-..+......|+++.|.+++. ...+.+..|-.+ ..+...+.+.++.+.|..++...+
T Consensus 367 ~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 367 FADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTV--GAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHH--HHHHHHHHhccCCccHHHHHHHHH
Confidence 6654312223444555666778999999999998 555555555444 446667778887777777777765
Q ss_pred hC--CCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 006624 575 HS--EIKPDAVS----YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 575 ~~--~~~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
.. .-.+.... +.-++.-=.+.|+-++|..+++++.+.. ++|..+...++.+|++.+
T Consensus 445 ~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 445 KWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred HHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 41 11122222 3333333356799999999999998753 677788888888887765
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-08 Score=97.17 Aligned_cols=216 Identities=12% Similarity=0.166 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---------
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPC---PAAYCSLINGYGKAKRYEAANELFLELKEYCGCS--------- 475 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 475 (638)
..|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...-.+..+++.|.++.+.+....-.+
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3466677778888888888888888876543322 3455555666667778888888877776531111
Q ss_pred --------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-
Q 006624 476 --------SARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD- 546 (638)
Q Consensus 476 --------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 546 (638)
+..+|...++.--..|-++....+++++.+..+.......| ....+-.+.-++++.+.|++-+..-..|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 23345556666666777788888888887765432222222 22233455667788887777665533344
Q ss_pred HHHHHHHHHHHHh-c--CCHHHHHHHHHHhhhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hh
Q 006624 547 INSHNIILNGLAK-S--GGPKRAMEIFTKMQHSEIKPDAV--SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQ--IT 619 (638)
Q Consensus 547 ~~~~~~l~~~~~~-~--g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~ 619 (638)
...|+..+.-+.+ - .+++.|..+|++..+ |++|... .|-.....=-+-|....|..++++.... +++.. ..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~m 624 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDM 624 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence 3456665554433 2 367888888888887 6665432 2222222233467788888888886543 45444 36
Q ss_pred HHHHHHH
Q 006624 620 YSSILEA 626 (638)
Q Consensus 620 ~~~l~~~ 626 (638)
|+..|.-
T Consensus 625 yni~I~k 631 (835)
T KOG2047|consen 625 YNIYIKK 631 (835)
T ss_pred HHHHHHH
Confidence 7776653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.4e-08 Score=91.01 Aligned_cols=273 Identities=14% Similarity=0.064 Sum_probs=177.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH-HhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSL-FESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 411 (638)
+-|+.....+..++...|+.++|...|++....+ |+..+-.-+-..+ ...|+.... ..+...+.... ......|-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~-~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD-SALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH-HHHHHHHHhhh-hcchhhhh
Confidence 3355555666666666666666666666655422 3332211111111 122222222 22222222110 11223333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 491 (638)
.-+......++++.|+.+-++.++.+ +.+...+..-...+...++.++|.-.|+.+... -+.+...|..|+++|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhc
Confidence 33445556778888888888888775 566677777778888899999999999988875 4467888999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALM-SGMVR-AGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
++.+|..+-+...+. ++.+..+.+.+. ..|.. ...-++|.+++++.+.. .|+ ....+.+...+...|..++++.
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHH
Confidence 999988877765543 234555555442 23332 22347888888887764 566 4456677788888999999999
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQI 618 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 618 (638)
++++... ..||....+.|.+.+...+.+++|.+.|....+. .|+..
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~~ 505 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKSK 505 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccch
Confidence 9998874 3688888999999999999999999998888743 45443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=107.77 Aligned_cols=198 Identities=13% Similarity=0.057 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.+++.....+ .+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP--NNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Confidence 3444444455555555555555555444321 1344444455555555555555555555554433 333444445555
Q ss_pred HHccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
+...|++++|.+.+++..+... ......+..+...+...|++++|.+.+++..+..+. +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 5555555555555555544211 112334444555555555555555555555544322 34445555555555556665
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
|...+++..+. .+.+...+..++..+...|+.+.|..+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555554 22234444445555555555555555555443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-10 Score=121.44 Aligned_cols=266 Identities=14% Similarity=0.055 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHH-----hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhhC
Q 006624 124 NSTTYMALIRCLD-----ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILG---------KAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~ 189 (638)
+...|...+++.. ..+.+++|...+++.++.. +.+...+..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4455555554431 2356899999999998853 334556666665543 234589999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-HHH
Q 006624 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKI 268 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~ 268 (638)
++. +..++..+...+...|++++|...|+++++.++ .+...+..+...+...|++++|...+++..+.. |+ ...
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~ 408 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP--ISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAA 408 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhh
Confidence 654 788899999999999999999999999999875 567788889999999999999999999999864 43 334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 348 (638)
+..++..+...|++++|+..+++......+-+...+..+...+...|+.++|...+.++..... .+....+.+...|+.
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhc
Confidence 4445556777899999999999987664333566677788889999999999999988766522 244455666677787
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC
Q 006624 349 AGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG 402 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 402 (638)
.| +.|...++.+.+. ...+....+..++.++ .|+...+ ..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~--~g~~~~~-~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVA--HGEAIAE-KMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH--HhhhHHH-HHH-HHhhccc
Confidence 77 4777777766442 2233333444444333 3333332 333 6666653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-10 Score=107.22 Aligned_cols=203 Identities=12% Similarity=0.038 Sum_probs=172.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
....+..+...+...|++++|...+++.++.. +.+...+..+...+...|++++|.+.|++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 45778889999999999999999999998754 556788889999999999999999999999887543 6778888999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...|++++|.+.|++.............+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998754322345677788889999999999999999998864 335678889999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+|...+++..+.. +.+...+..++..+...|+.++|..+.+.+...
T Consensus 187 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998873 346777778888899999999999998877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-10 Score=117.13 Aligned_cols=268 Identities=11% Similarity=0.010 Sum_probs=190.5
Q ss_pred CCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh---------cCCHhHHHHHHHHHH
Q 006624 157 VMGPSVLSEIVNILGK-----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ---------EGYYEKIHELYNEMC 222 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 222 (638)
..+...|...+++... .+.+++|...|++..+..+. +...|..+..++.. .+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4455666555555322 23568999999999988543 56677777665542 345899999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006624 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+.++ .+...+..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|+..+++..+.++. +..
T Consensus 332 ~ldP--~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~ 407 (553)
T PRK12370 332 ELDH--NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAA 407 (553)
T ss_pred hcCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chh
Confidence 9876 678889999999999999999999999999875 345778899999999999999999999999998765 333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH-HHHHHH
Q 006624 303 TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN-TVIKSL 381 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~ll~~~ 381 (638)
.+..++..+...|++++|...++++.+...+-+...+..+..++...|+.++|...++++... .|+..... .+...+
T Consensus 408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEY 485 (553)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHH
Confidence 344445556778999999999999887643335566788888999999999999999987653 34444444 444444
Q ss_pred HhcCChHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 382 FESKAPASEASAWFEKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 382 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 437 (638)
+..++ . +...++.+.+. ...+....+ .-..+.-.|+-+.+..+ +++.+.+
T Consensus 486 ~~~g~--~-a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 486 CQNSE--R-ALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred hccHH--H-HHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 55553 2 24444444432 112222222 33445566777776666 7777654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.5e-11 Score=107.63 Aligned_cols=230 Identities=14% Similarity=0.102 Sum_probs=188.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHHHh
Q 006624 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY-NSMILMLMQ 207 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~ 207 (638)
+-+.++|.+.|.+.+|.+.++..+. ..|-+.+|..+..+|.+-.+++.|+.+|.+-.+. .|-.+|| .-+.+.+-.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~--q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT--QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh--cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 6678899999999999999998877 4677788888999999999999999999988776 4444554 446677888
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.++.++|.++|+...+..+ .++.....+...|.-.++.+-|+++++++.+.|+. +...|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~~--~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP--INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC--ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHH
Confidence 8999999999999988776 67888888888888889999999999999998864 88888888888888999999988
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 288 LVQEMKGKGCAL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 288 ~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
-|+.....--.| -...|-.+.......|++..|.+.|+-.+..+.. ....+|.|.-.-.+.|++++|..+++...+.
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888876543222 3456667777788889999999999888877554 6778888888888999999999999888764
Q ss_pred C
Q 006624 366 Q 366 (638)
Q Consensus 366 ~ 366 (638)
.
T Consensus 459 ~ 459 (478)
T KOG1129|consen 459 M 459 (478)
T ss_pred C
Confidence 3
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-09 Score=106.93 Aligned_cols=130 Identities=19% Similarity=0.224 Sum_probs=78.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
++..+.+.|...|++++|.+.+++.++. .|..+..|..-...|-+.|++.+|.+.++...... .-|...-+-....+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH-TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 3445566666677777777777777665 23346666666677777777777777777766654 235555555566666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 524 RAGMIDDAYSLLRRMEEDGCVPDIN------SH--NIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~------~~--~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+.|++++|.+++......+..|-.. .| .-...+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777776666554322211 11 2234566677777777666665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-08 Score=95.14 Aligned_cols=447 Identities=13% Similarity=0.065 Sum_probs=236.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH--HHHHH-
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM--ILMLM- 206 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~- 206 (638)
+=++.+..+|++++|.+....++..+ +.+...+..-+.++.+.++|++|+.+.+.-. -..+++.. =.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHH
Confidence 44566667777777777777777654 5555666666677777777777775443321 11122222 33443
Q ss_pred -hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006624 207 -QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 207 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+..++|+..++.... .+..+...-...+.+.|++++|+.+|+.+.+.+.+. +...-..++..-.
T Consensus 90 Yrlnk~Dealk~~~~~~~-----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a------- 157 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDR-----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA------- 157 (652)
T ss_pred HHcccHHHHHHHHhcccc-----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-------
Confidence 66777777777772211 334455555666777777777777777777654321 1111111111110
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHcC-------CCCCHH-------HHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTEL---IKGLGRAGRVEDAYGLFMNMLKEG-------CKPDIV-------LINNLINVLG 347 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~-------~~~~l~~~~~ 347 (638)
+... +.+......| ..+|..+ .-.+...|++.+|+++++...+.+ -.-+.. .-..+..++-
T Consensus 158 ~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 158 ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 0111 1111111122 2223222 334556777777777777763211 110110 1223445566
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhcCChHH-HHHHHHHHHHhCCC----------CCCHHHHH-
Q 006624 348 RAGRLEDALKLFNKMEALQCKPNVV----TYNTVIKSLFESKAPAS-EASAWFEKMKANGV----------LPSPFTYS- 411 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~~~----------~~~~~~~~- 411 (638)
..|+.++|..++......... |.. .-|.++.. ....+..+ .....++....... .-..+..|
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888777765532 321 22222221 11111111 11111111110000 00001111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGY--GKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGK 489 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 489 (638)
.++. ...+..+.+.++....... .|. ..+..++..+ ++.....++.+++....+........+.-.++.....
T Consensus 314 ~lL~--l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 314 ALLA--LFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHH--HHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 1222 2233344444443332211 222 2333333332 2223577778888777775444446677777888889
Q ss_pred cCCHHHHHHHHH--------HHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHH----HH
Q 006624 490 CGRLSDAVDLFN--------EMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED--GCVPDINSHNII----LN 555 (638)
Q Consensus 490 ~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l----~~ 555 (638)
.|+++.|++++. .+.+.+..|. +...+...+.+.++.+.|..++++.+.. .-.+......++ ..
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~ 466 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE 466 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence 999999999998 5555444444 4445666777888877788888777642 011222233333 33
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
.-.+.|+.++|..+++++.+.+ .+|..+...++.+|++. +.+.|..+-+.+
T Consensus 467 f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 467 FKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 3356799999999999999743 46788888899888876 677777766554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-07 Score=96.07 Aligned_cols=295 Identities=15% Similarity=0.128 Sum_probs=197.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE- 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 208 (638)
-...++...|++++|.+.++.-.+. +......+......+.+.|+.++|..+|..+.++++. |..-|..+..++.-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhc
Confidence 3456678899999999999875442 3445667788888999999999999999999998543 455555555555322
Q ss_pred ----CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 209 ----GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD-ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 209 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
...+...++|+++.... |.......+.-.+..-..+ ..+..++..+..+|++ .+|+.|-..|......+
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y---p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY---PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC---ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 25677888898887765 4333333332222222222 3455667777888864 45666666676555555
Q ss_pred HHHHHHHHHHhC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGK----G----------CALTV--YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 284 ~A~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
-..+++...... + -.|+. +++.-+...|...|++++|+.+.++.++..+. .+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHH
Confidence 555666555432 1 12333 35566678888999999999999999887433 4778888888999
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHh
Q 006624 348 RAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT------Y--SILIDGFCK 419 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~ 419 (638)
..|++.+|.+.++.....+.. |...-+-....+.+.|...++ ...+......+..|-... | .....+|.+
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A-~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEA-EKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHH-HHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876533 555555556666777777766 666666666554332211 1 334567888
Q ss_pred cCCHHHHHHHHHHHHh
Q 006624 420 TNRVEKAHLLLEEMEE 435 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~ 435 (638)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888877776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-08 Score=98.98 Aligned_cols=429 Identities=13% Similarity=0.025 Sum_probs=238.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
..-++.+|..+.-++...|+++.+.+.|++....-+ .....|+.+...|...|.-..|+.+.+.-......++|...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 345777888888888888888888888888765433 3667788888888888888888888888776653323444444
Q ss_pred HHHHHHH-ccCChHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHHHhCCCCC
Q 006624 236 ALISAFG-KLGRDISAIRLFDEMKEN--GL--QPTAKIYTTLVSIYFK-----------LGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 236 ~l~~~~~-~~g~~~~A~~~~~~m~~~--g~--~~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~m~~~~~~~ 299 (638)
..-+.|. +.+.+++++.+-.+.... |. ......|..+.-+|.. .....++++.+++..+.+..
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~- 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT- 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 4444444 346777777777666652 11 1233444444444432 12246777888888777654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
|....--+.--|+..++++.|.+...+..+-+..-+...|..+.-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333223334467788888888888888887666688888888888888888888888887764421 011111111111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH------hcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHH
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC------KTNRVEKAHLLLEEMEEK--GFPPCPAAYCSLING 451 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~ 451 (638)
.-..-++..++ .. |...++..+- +.++-.+..++...+.-. .....+.++..+...
T Consensus 556 i~~~~~~~e~~-l~---------------t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 556 IELTFNDREEA-LD---------------TCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhcccHHHH-HH---------------HHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHH
Confidence 11112222222 11 1111111111 111111111111111100 001112222222222
Q ss_pred HHccCCHHHHHHHHHHHHHcCCC--Cc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 452 YGKAKRYEAANELFLELKEYCGC--SS------ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
....+ +.+..-.. +...... |+ ...|......+.+.+..++|...+.+..+.. +-....|......+.
T Consensus 620 ~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHH
Confidence 11110 10000000 1111011 11 2345556666677777777776666665542 334555666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 524 RAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAME--IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEE 600 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 600 (638)
..|..++|.+.|...... .|+ +.+..++...+.+.|+..-|.. ++..+.+.+. -+...|..+...+.+.|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHH
Confidence 777777777777777664 343 5566677777777776666655 7777776542 256677777777777777777
Q ss_pred HHHHHHHHHh
Q 006624 601 AARLMKDMNA 610 (638)
Q Consensus 601 A~~~~~~m~~ 610 (638)
|.+.|.....
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 7777776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.9e-08 Score=98.72 Aligned_cols=438 Identities=15% Similarity=0.081 Sum_probs=287.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-HH
Q 006624 118 RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-AN 196 (638)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~ 196 (638)
...+..+...|..+.=++...|++..+.+.|++.... +.-....|..+.-.+...|.-..|..+.+.-......|+ ..
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s 394 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS 394 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence 3445568899999999999999999999999987653 455667899999999999999999999988766543343 33
Q ss_pred HHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHcc-----------CChHHHHHHHHHHHHCC
Q 006624 197 TYNSMILMLMQ-EGYYEKIHELYNEMCNEGNC---FPDTVTYSALISAFGKL-----------GRDISAIRLFDEMKENG 261 (638)
Q Consensus 197 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~m~~~g 261 (638)
.+......|.+ -+.+++++++..++...... ......|..+.-+|... ....++++.+++..+.+
T Consensus 395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d 474 (799)
T KOG4162|consen 395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD 474 (799)
T ss_pred HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence 34333344443 47788888888777662111 13345555555555432 12357888899988765
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
. -|..+...+.--|.-.++++.|.+..++..+.+..-+...|..+.-.+...+++.+|+.+.+.....-.. |-.....
T Consensus 475 ~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 475 P-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred C-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 2 3444444556667788999999999999999877779999999999999999999999999988875111 2222222
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHH-
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKAN--GVLPSPFTYSILIDGFC- 418 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~- 418 (638)
-+..-..-++.++++.....+... |...- .....++ ..........+.-. .......++..+.....
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~-~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~ 622 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLD-EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS 622 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhh-hhhhhhhhcccccCcccccccchhhHHHHHHHHh
Confidence 223333456777776666555331 00000 0000000 00001111111110 01111223332222221
Q ss_pred --hcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006624 419 --KTNRVEKAHLLLEEMEEKGFPPC------PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 419 --~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
+.-..+.. +....... .|+ ...|......+.+.+..++|...+.++.+. .+.....|......+...
T Consensus 623 ~~~~~~se~~---Lp~s~~~~-~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 623 QLKSAGSELK---LPSSTVLP-GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVK 697 (799)
T ss_pred hhhhcccccc---cCcccccC-CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHH
Confidence 11111111 11111111 111 234566677788888888888888888775 456677888888888899
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 491 GRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYS--LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
|.+++|.+.|...... .|+ +....++...+.+.|+..-|.. ++..+.+.+. .+...|..+...+.+.|+.++|.
T Consensus 698 ~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred HhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchHHHH
Confidence 9999999999988775 354 5678888899999998777777 9999998753 37899999999999999999999
Q ss_pred HHHHHhhhC
Q 006624 568 EIFTKMQHS 576 (638)
Q Consensus 568 ~~~~~m~~~ 576 (638)
+.|+...+.
T Consensus 775 ecf~aa~qL 783 (799)
T KOG4162|consen 775 ECFQAALQL 783 (799)
T ss_pred HHHHHHHhh
Confidence 999988763
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-09 Score=107.64 Aligned_cols=207 Identities=22% Similarity=0.279 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC
Q 006624 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGK-----GC-ALTVYT-YTELIKGLGRAGRVEDAYGLFMNMLKE-----GCK 333 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~ 333 (638)
..+...+...|...|++++|+.+++...+. |. .|...+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 445666888888888888888888877654 21 223333 334677889999999999999998762 221
Q ss_pred -C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHH
Q 006624 334 -P-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTY 410 (638)
Q Consensus 334 -p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~ 410 (638)
| -..+++.|...|.+.|++++|...++...+. ++.... -..|.. ..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-----------------------------~~~~~~-~~~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-----------------------------YEKLLG-ASHPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------------HHHhhc-cChHHHHHHH
Confidence 2 2346788888999999999999999887541 111000 001111 234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---CC----CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----C---CCc
Q 006624 411 SILIDGFCKTNRVEKAHLLLEEMEEKG---FP----PCPAAYCSLINGYGKAKRYEAANELFLELKEYC----G---CSS 476 (638)
Q Consensus 411 ~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~---~~~ 476 (638)
+.+...++..+++++|..+++...+.- +. .-..+++.+...|...|++++|.+++++++... . .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 556677888899999998888654320 11 112356666666666666666666666655421 1 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
...++.|...|.+.+++++|.++|.+
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~ 434 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEE 434 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHH
Confidence 23344444555555555555555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=6e-12 Score=83.80 Aligned_cols=50 Identities=40% Similarity=0.747 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 006624 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
||..+|++++++|++.|++++|.++|++|.+.|+.||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 67777777777777777777777777777777777777777777777764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-09 Score=98.49 Aligned_cols=205 Identities=13% Similarity=0.052 Sum_probs=171.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
+..|-.--+.+..+|.+.|.+.+|.+.|+.-.+. .|-++||..|.++|.+-.+++.|+.+|.+-++..+ -|+....
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~ 294 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLL 294 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhh
Confidence 3344445578889999999999999999998877 67889999999999999999999999999988664 4555556
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 236 ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 236 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
-+.+.+-..++.++|.++++...+.. +.++.....+...|.-.+++|-|+..++.+++.|+. +...|+.+.-+|.-.+
T Consensus 295 g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 295 GQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 67788888999999999999998863 446777778888899999999999999999999987 8889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 316 RVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+++-++..|++.+..-..|+ ..+|..+.......||+..|.+.|+-....+
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d 425 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD 425 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC
Confidence 99999999999887654444 3467778888888899999998888776543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.8e-07 Score=91.43 Aligned_cols=211 Identities=18% Similarity=0.212 Sum_probs=135.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHhhHHHH---------------------------HHHHHccC
Q 006624 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG--FPPCPAAYCSL---------------------------INGYGKAK 456 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l---------------------------i~~~~~~g 456 (638)
|+...+.-+.++...+-..+-+++++++.-.+ +..+...-+.| .......+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~ 1062 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQ 1062 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhh
Confidence 34444555666667777777777777765321 11111111111 12233344
Q ss_pred CHHHHHHHHHHHHHc---------------------CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhH
Q 006624 457 RYEAANELFLELKEY---------------------CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTY 515 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~---------------------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 515 (638)
-+++|..+|+..... .....+.+|+.+..+-...|...+|++-|-+. .|...|
T Consensus 1063 LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1063 LYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 567777777653211 01234678999999999999999998777543 366789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH-----------
Q 006624 516 NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVS----------- 584 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----------- 584 (638)
.-++....+.|.+++-..++....+..-.|...+ .|+-+|++.++..+-.+++. .||...
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhh
Confidence 9999999999999999999988888777777665 57778888887766554432 234333
Q ss_pred ---------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccCCC
Q 006624 585 ---------------YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNPT 637 (638)
Q Consensus 585 ---------------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 637 (638)
|..|...+...|.++.|...-++. -+..||..+--+|...++++.|+
T Consensus 1208 ~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH
Confidence 444444455555555554433333 25568999999999888888775
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=81.80 Aligned_cols=49 Identities=45% Similarity=0.813 Sum_probs=23.5
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.3e-09 Score=103.69 Aligned_cols=245 Identities=19% Similarity=0.190 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-----CC-CCCHHH-HHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCC
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSR-----KC-KPTANT-YNSMILMLMQEGYYEKIHELYNEMCNE-----GNC 227 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 227 (638)
..++..+...|..+|++++|..++++..+. |. .|.+.+ .+.+...|...+++++|..+|+++... |..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345556777777788888888777766543 21 223332 334666777777777777777776543 222
Q ss_pred CCCH-HHHHHHHHHHHccCChHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---C
Q 006624 228 FPDT-VTYSALISAFGKLGRDISAIRLFDEMKEN-----GL-QPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGK---G 296 (638)
Q Consensus 228 ~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~ 296 (638)
.|.+ .+++.|...|.+.|++++|...+++..+. |. .|.+ ..++.++..+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2322 45666667777777777777766655432 11 1121 23455666666677777777766654432 1
Q ss_pred CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 297 CAL----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----C--KP-DIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 297 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
+.+ -..+++.|...|.+.|++++|.++|++++... - .+ ....++.+...|.+.+.+.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~- 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD- 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH-
Confidence 111 13456666777777777777777776665421 1 11 123455566666666666666666665432
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 366 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 434 (638)
+. .....+.+-...+|..|...|.+.|+++.|.++.+.+.
T Consensus 438 ----------------------------i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 ----------------------------IM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred ----------------------------HH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 11 11111222234678888888889999999888887765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.9e-07 Score=89.82 Aligned_cols=454 Identities=14% Similarity=0.173 Sum_probs=267.3
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCCCHHHHHHHHHHHHh
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS---------TCVMGPSVLSEIVNILGK 172 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~ 172 (638)
.++.+.|.+-.+.+ .+..+|..|.+.+.+.++.|-|.-.+-.|... ...++ ..=..+.....+
T Consensus 741 iG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 34556664444432 25679999999999999999888777666432 01111 222334444567
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIR 252 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 252 (638)
.|..++|+.+|.+-+.. ..|=..|-..|.+++|+++-+.=-+. .=..||......+-..++.+.|++
T Consensus 813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi----HLr~Tyy~yA~~Lear~Di~~Ale 879 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI----HLRNTYYNYAKYLEARRDIEAALE 879 (1416)
T ss_pred HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce----ehhhhHHHHHHHHHhhccHHHHHH
Confidence 89999999999998764 44556677789999999987653332 223466666777777788888888
Q ss_pred HHHHH----------HHCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 253 LFDEM----------KENG---------LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 253 ~~~~m----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
.|++. .... -..|...|......+-..|+.+.|+.+|..... |-++++..|-
T Consensus 880 yyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 880 YYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCI 950 (1416)
T ss_pred HHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEee
Confidence 87743 2111 112445555555666677888888888876543 5566777778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH---
Q 006624 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE--- 390 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a--- 390 (638)
+|+.++|-++-++- -|......+.+.|-..|++.+|..+|-+... +...|+. |+.++..+.
T Consensus 951 qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRl-cKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 951 QGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRL-CKENDMKDRLAN 1014 (1416)
T ss_pred ccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHH-HHhcCHHHHHHH
Confidence 88888888777653 2667777889999999999999998887643 2222222 222222211
Q ss_pred ------------HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHhhHHHH
Q 006624 391 ------------ASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE--------MEEK--GFPPCPAAYCSL 448 (638)
Q Consensus 391 ------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--------~~~~--~~~~~~~~~~~l 448 (638)
+..+|++.. . -+...+..|-+.|.+.+|+++--+ ++.. .-..|+...+..
T Consensus 1015 lal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 122222221 0 112234456677777777665322 1222 223466677777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHc----------C----------------CCCc----HHHHHHHHHHHHhcCCHHHHHH
Q 006624 449 INGYGKAKRYEAANELFLELKEY----------C----------------GCSS----ARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 449 i~~~~~~g~~~~A~~~~~~~~~~----------~----------------~~~~----~~~~~~li~~~~~~g~~~~A~~ 498 (638)
.+.++...++++|..++....+. + ..|+ ..+...+...+.++|.+..|-+
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtK 1166 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATK 1166 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 77777777777777766544321 1 1122 2345566677777887776665
Q ss_pred HHHH----------HHhCCC-----------------------------CC------CHhh-------HHHHHHHHH---
Q 006624 499 LFNE----------MKKLRC-----------------------------KP------DVYT-------YNALMSGMV--- 523 (638)
Q Consensus 499 ~~~~----------m~~~~~-----------------------------~p------~~~~-------~~~l~~~~~--- 523 (638)
-|.+ +.+.|- .. |+.| +..|...|.
T Consensus 1167 KfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~~cA 1246 (1416)
T KOG3617|consen 1167 KFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYKSCA 1246 (1416)
T ss_pred HHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHHHHH
Confidence 5543 222220 01 1111 122222221
Q ss_pred H------------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHHHHhhhCCCCC
Q 006624 524 R------------AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK-----------SGGPKRAMEIFTKMQHSEIKP 580 (638)
Q Consensus 524 ~------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-----------~g~~~~A~~~~~~m~~~~~~p 580 (638)
+ .|-.++|...+.++.++. .....++.|-.-..+ ..|..+.++-.+.|.+....|
T Consensus 1247 qiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1247 QIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred HhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence 1 233344555555555432 112223333221111 124455555555565544444
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 581 D----AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 581 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
| ...|..+|..+....++..|.+.+++|..+
T Consensus 1325 ~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1325 DIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred CcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 3 457888999999999999999999999876
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-08 Score=87.81 Aligned_cols=198 Identities=11% Similarity=-0.008 Sum_probs=137.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
+...+.-.|.+.|++..|..-+++..+..+. +..+|..+...|.+.|+.+.|.+.|++.++..+ .+....|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHH
Confidence 4455666677777777777777777776433 566777777777777777777777777777665 5666677777777
Q ss_pred HccCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 320 (638)
|..|++++|.+.|++....-. .--..+|..+.-+..+.|+.+.|.+.|++.++..+. ...+.-.+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 777777777777777776421 112456777777777777777777777777776554 445566667777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..+++.....+. ++....-..|..-...|+.+.+.+.=..+..
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 777777776655 6777766677777777777766665555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-08 Score=86.82 Aligned_cols=208 Identities=18% Similarity=0.058 Sum_probs=175.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
+...+.-.|.+.|+...|..-+++.++.+ |.+..++..+...|.+.|+.+.|.+.|+++... .+.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl-~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL-APNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-CCCccchhhhhhHHHH
Confidence 34557778999999999999999999987 788889999999999999999999999999987 5567888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 489 KCGRLSDAVDLFNEMKKLRCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
..|++++|...|++....-.-+ -..+|..+.-+..+.|+.+.|.+.|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 9999999999999998752111 256888888888999999999999999998642 24567778889999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSS 622 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 622 (638)
.++++....+. ++..+.-..|+.-.+.|+.+.|.++=..+.+. -|...-|..
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHh
Confidence 99999988665 88888888899999999999998887777643 455544443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.9e-07 Score=95.22 Aligned_cols=478 Identities=13% Similarity=0.075 Sum_probs=255.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------CCCC--------------CCHHHHHHHHHHHHhCCCHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVR-------STCV--------------MGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.|.+.+|..+..+|.+.|+......+=+++.. .|+. .....-..++....-.|-++.++
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLL 159 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999998753222222221 1111 11111122334445556667777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
++...++..... .+... .++-..... .+++-..+...... .|+..+|..+++.-...|+.+.|..++.+|.+
T Consensus 160 kll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e----~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE----APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc----CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 776666544211 11111 233332222 23444444333333 29999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI 339 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 339 (638)
.|++.+..-|-.|+-+ .++...+..+++.|.+.|+.|+..|+...+-.+..+|....+.. |. +....+
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e--------~s-q~~hg~ 300 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE--------GS-QLAHGF 300 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc--------cc-chhhhh
Confidence 9999998877777766 88899999999999999999999999988777777665322211 11 122222
Q ss_pred HHHHHHHHccC-----CHH-----HHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--C-CCC
Q 006624 340 NNLINVLGRAG-----RLE-----DALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--V-LPS 406 (638)
Q Consensus 340 ~~l~~~~~~~g-----~~~-----~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~-~~~ 406 (638)
++-+..-.-.| +.+ -....+.+..-.|.......|...++... .|...+. .++-..+...- . ..+
T Consensus 301 tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~h-Qgk~e~v-eqlvg~l~npt~r~s~~~ 378 (1088)
T KOG4318|consen 301 TAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRH-QGKGEEV-EQLVGQLLNPTLRDSGQN 378 (1088)
T ss_pred hHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHH-cCCCchH-HHHHhhhcCCccccCcch
Confidence 22222222222 111 11111111111233333344444443332 2222222 33323222110 0 112
Q ss_pred HHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHh------------C----CCCCC-------
Q 006624 407 PFTYSILIDGFCKT----------------------NRVEKAHLLLEEMEE------------K----GFPPC------- 441 (638)
Q Consensus 407 ~~~~~~l~~~~~~~----------------------~~~~~A~~~~~~~~~------------~----~~~~~------- 441 (638)
+..|..++.-|.+. .+..+..+++..... . ...+=
T Consensus 379 V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 379 VDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 22333333222221 111111121111100 0 00000
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHH
Q 006624 442 PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNALM 519 (638)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~ 519 (638)
...-+.++..+++.-+..++...-+.....-+ ...|..||+-++...+.+.|..+.++.... .+..|..-+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 00122333344444444444433333322211 256777788788888888888877776542 1233445567777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDG-CVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGM 597 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 597 (638)
+.+.+.+....+..++.++.+.- ..|+ ..++--+++.....|+.+.-.++++-+...|+.-+ .-++....+.++
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd 611 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDD 611 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccc
Confidence 77778888888888887777641 1222 33444556666777787777777777776665432 334444566777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 006624 598 FEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 598 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
...|.++.+.-... ++|.+.....+.+.+.
T Consensus 612 ~s~a~ea~e~~~qk-yk~~P~~~e~lcrlv~ 641 (1088)
T KOG4318|consen 612 QSAAQEAPEPEEQK-YKPYPKDLEGLCRLVY 641 (1088)
T ss_pred hhhhhhcchHHHHH-hcCChHHHHHHHHHHH
Confidence 77777777665543 5666655555555444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-08 Score=95.80 Aligned_cols=197 Identities=14% Similarity=0.065 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+..++.+.|++++|...|++.++.. +.++..|+.+...+...|++++|...|++..+..+. +..+|..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3557777777888888888888888877753 456777888888888888888888888888776433 56677777777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|++.|+...+..+. +. ....+.......++.++|.+.|++..... .|+...+ .+... ..|+...
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~--~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~~~ 214 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPN--DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKISE 214 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCC--CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCCCH
Confidence 88888888888888888776542 22 22222223345567788888876655432 2222221 22222 2344333
Q ss_pred HHHHHHHHHh---CCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 285 ALGLVQEMKG---KGCA---LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 285 A~~~~~~m~~---~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+ +.++.+.+ ..+. .....|..+...+.+.|++++|...|++..+.+
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2 23333332 1110 123456666677777777777777777776654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.7e-07 Score=95.17 Aligned_cols=464 Identities=10% Similarity=0.001 Sum_probs=248.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTANTYNSMIL 203 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~ 203 (638)
...|..|...|..-.+...|.+.|+.....+ ..+......+...|++..+++.|..+.-..-+... ..-...|..+.-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578888888888778888888888887754 45667788888999999999999988544433311 112223444566
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEV 282 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~ 282 (638)
.|.+.++...|+..|+...+..| .|...|..++.+|...|++..|+++|.+.... .|+. ..-.-..-..+..|.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dP--kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkY 646 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDP--KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKY 646 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCc--hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhH
Confidence 67888999999999999999876 78889999999999999999999999988874 3432 2223334456678999
Q ss_pred HHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHcc
Q 006624 283 EKALGLVQEMKGKG------CALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-------EGCKPDIVLINNLINVLGRA 349 (638)
Q Consensus 283 ~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~ 349 (638)
.+|++.++...... ..--..++..+...+.-.|-...|..+++..++ +...-+...|..+.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as------ 720 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS------ 720 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh------
Confidence 99999888876431 111223333333344444444455555544433 21111222222222
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------
Q 006624 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAP---ASEASAWFEKMKANGVLPSPFTYSILIDGFCK------- 419 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 419 (638)
.|..+|-... .. .|+......+..-.-..+.. +-.....-..........+..+|..++..|.+
T Consensus 721 ----dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 721 ----DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred ----HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCC
Confidence 2222332222 00 12222222222111111111 00000000000000111123344444444333
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006624 420 -TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 420 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
..+...|+..+.+..+.. ..+..+|+.|.-. ...|++.-|...|-+.... .+.+..+|..+.-.+....+++-|..
T Consensus 795 t~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhH
Confidence 122345666666666553 4455556555544 5556666666666555443 33445566666666667777777777
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHH--HHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRR--MEE--DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~--~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.|...+... +.|...|-.........|+.-++..+|.. ... .|-.|+..-|-.....-...|+.++-+...+++.
T Consensus 872 af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 872 AFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 777766642 23344454443344455666666666654 111 1223333333222222334444444333333322
Q ss_pred h---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 575 H---------SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 575 ~---------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
. .+.+-+...|.......-+.+.+.+|.++..+..
T Consensus 951 sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli 994 (1238)
T KOG1127|consen 951 SASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI 994 (1238)
T ss_pred hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 1 0222234456565556666666666666655543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=2e-08 Score=96.08 Aligned_cols=233 Identities=15% Similarity=0.054 Sum_probs=166.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC-C--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTC-V--MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
..+...+..+.++..+.+++.... . -....|......+.+.|+.++|...|.+..+..+. +...|+.+...+...|
T Consensus 34 ~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g 112 (296)
T PRK11189 34 VPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAG 112 (296)
T ss_pred cccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCC
Confidence 344445666778888888775421 1 22456888888999999999999999999988654 7899999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 210 YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289 (638)
Q Consensus 210 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 289 (638)
++++|.+.|++.++..+ .+..+|..+...+...|++++|.+.|+...+.. |+..............+++++|.+.+
T Consensus 113 ~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 113 NFDAAYEAFDSVLELDP--TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred CHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999999775 567788889999999999999999999999864 44332222233345678899999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE---GC---KPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 290 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
++..... .++...+ .+ .....|+..++ ..++.+.+. .+ +....+|..+...+.+.|++++|...|++..
T Consensus 189 ~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7765432 2232222 22 23345555544 344444432 11 1134578899999999999999999999998
Q ss_pred HCCCCCCHhHHHH
Q 006624 364 ALQCKPNVVTYNT 376 (638)
Q Consensus 364 ~~~~~p~~~~~~~ 376 (638)
+.++ ||.+.+..
T Consensus 264 ~~~~-~~~~e~~~ 275 (296)
T PRK11189 264 ANNV-YNFVEHRY 275 (296)
T ss_pred HhCC-chHHHHHH
Confidence 7552 34444433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.3e-07 Score=80.90 Aligned_cols=292 Identities=13% Similarity=0.092 Sum_probs=197.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS-MILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~ 205 (638)
-+.+.+..+.+..++.+|++++....... +.+....+.+..+|....++..|...|+++-.. .|...-|.. -...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 35667777788899999999998887753 446777888889999999999999999999776 455555543 34667
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH--HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI--SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+.+.+.+|+.+...|... ++...-..-+ ......+++..+..++++....| +..+.+.......+.|+++
T Consensus 89 Y~A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHhcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 7899999999999888653 2222222222 23345788888999998877543 5666677777788999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCH--------------
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-------------PDI-------------- 336 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-------------p~~-------------- 336 (638)
.|.+-|+...+.+--.....|+..+ +..+.|+++.|++...+++++|+. ||+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999988865443566777655 455788999999999999987754 121
Q ss_pred -HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006624 337 -VLINNLINVLGRAGRLEDALKLFNKMEAL-QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 337 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 414 (638)
..+|.-...+.+.|+++.|.+.+-.|..+ ....|++|...+.-.- ..+++.+. ..-+.-+.... +-...||..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g-~~KLqFLL~~n-PfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEG-FEKLQFLLQQN-PFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCcccc-HHHHHHHHhcC-CCChHHHHHHH
Confidence 12343344556778888888887777432 2334556554443211 11222222 22223333332 23456777777
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 006624 415 DGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 415 ~~~~~~~~~~~A~~~~~~ 432 (638)
-.||++.-++.|-.++.+
T Consensus 318 llyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHhhhHHHhHHHHHHhh
Confidence 778888777777777654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.5e-06 Score=81.53 Aligned_cols=439 Identities=13% Similarity=0.141 Sum_probs=208.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+-|..+|+.||+-+..+ -++++...+++++.. .+..+..|...|..-.+..+++....+|.+.... ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 45889999999988777 999999999999884 4567788999999999999999999999998776 3467777766
Q ss_pred HHHHHh-cCCHhH----HHHHHHHHHhC-CCCCCCHHHHHHHHHHH---------HccCChHHHHHHHHHHHHCCCCCCH
Q 006624 202 ILMLMQ-EGYYEK----IHELYNEMCNE-GNCFPDTVTYSALISAF---------GKLGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~~~-~g~~~~----A~~~~~~~~~~-~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+.---+ .|+... -.+.|+-.... |........|+..+..+ ....+++...+++.++...-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP----- 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP----- 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc-----
Confidence 653322 222222 22333333322 21111222233333221 12223444444555444321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHH
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNLIN 344 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~~~~~l~~ 344 (638)
.+++++-.+=|....+. .|..|-..++. -+...+..|.++++++.. .|...+..+
T Consensus 168 ------------m~nlEkLW~DY~~fE~~---IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~------ 224 (656)
T KOG1914|consen 168 ------------MHNLEKLWKDYEAFEQE---INIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPA------ 224 (656)
T ss_pred ------------cccHHHHHHHHHHHHHH---HHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCC------
Confidence 11222222222222111 12222222211 123344555555555543 121111000
Q ss_pred HHHccCCHH--HHHHHHHHHHH----CCCC-CC--------HhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHH
Q 006624 345 VLGRAGRLE--DALKLFNKMEA----LQCK-PN--------VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFT 409 (638)
Q Consensus 345 ~~~~~g~~~--~A~~~~~~~~~----~~~~-p~--------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 409 (638)
.-..|--+ ...+++....+ .+.. -+ ..+|+..+..+.-..+..-.+..++...
T Consensus 225 -vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~----------- 292 (656)
T KOG1914|consen 225 -VPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEI----------- 292 (656)
T ss_pred -CCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------
Confidence 00000000 01111111100 0000 00 0011111111000000000000000000
Q ss_pred HHHHHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCcHHH
Q 006624 410 YSILIDGFCKTNR-------VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA---KRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 410 ~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
-+.+...|+ .+++..+++..++.-...+...|..+.+.--.. ++.+.....++++.......-.-+
T Consensus 293 ----s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv 368 (656)
T KOG1914|consen 293 ----SDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLV 368 (656)
T ss_pred ----hHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCcee
Confidence 011222222 334445555444322222333333333221111 124555555555555433333445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 480 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
|...++.-.+..-++.|..+|.+..+.+..+ +++.+++++.-+| .++.+-|.++|+--+++ ..-+..--...++-+.
T Consensus 369 ~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~ 446 (656)
T KOG1914|consen 369 YCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLS 446 (656)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHH
Confidence 6666666666666777777777776665544 5566666665544 55667777777655543 1222333344556666
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 559 KSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 559 ~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..++-..|..+|++....++.|| ..+|..++.-=..-|+.+.+.++-+++..
T Consensus 447 ~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 447 HLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66777777777777766644444 35677777766677777777776666553
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=4e-07 Score=90.75 Aligned_cols=197 Identities=12% Similarity=-0.007 Sum_probs=99.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTA-NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
.+..+...+...|+.+++...+.+..+... .++. .........+...|++++|.+.+++.....+ .|...+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hH
Confidence 344444444455555555444444433211 1111 1122223344556666666666666665543 23333331 11
Q ss_pred HHH----ccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 240 AFG----KLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 240 ~~~----~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.+. ..|..+.+.+.++.. ....| .......+...+...|++++|.+.+++..+..+. +...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 222 223334444444331 11122 2333444555666677777777777777666543 455666666677777
Q ss_pred CCHHHHHHHHHHHHHcCCC-CCH--HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCK-PDI--VLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~-p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|++++|...+++....... |+. ..|..+...+...|++++|..++++...
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777777777766654221 222 2344566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.4e-06 Score=78.14 Aligned_cols=303 Identities=14% Similarity=0.051 Sum_probs=178.6
Q ss_pred CCHHHHHHHHHHHHcc--CChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 229 PDTVTYSALISAFGKL--GRDISAIRLFDEMKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
|+..+...++.+++.. ++...|.+.+--+... -++-|+.....+...+...|+.++|+..|++....++. +.....
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD 270 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMD 270 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHH
Confidence 4444555566655543 4444555544444332 24557778888899999999999999999888765332 222333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH-HHHHhc
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI-KSLFES 384 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll-~~~~~~ 384 (638)
...-.+.+.|+++.-..+...+....- -....|-.-+.......++..|+.+-++....+ |+.+.-..+- ..+...
T Consensus 271 ~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~ 347 (564)
T KOG1174|consen 271 LYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIAL 347 (564)
T ss_pred HHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhc
Confidence 334455677888777777766665421 122333333445556778888888888776633 3333332222 233444
Q ss_pred CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHH-HHHH-ccCCHHHHH
Q 006624 385 KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLI-NGYG-KAKRYEAAN 462 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~ 462 (638)
+++.++ .-.|+...... +.+...|.-|+.+|...|++.+|..+-++..+. ++.+..+.+.+. ..+. ...--++|.
T Consensus 348 ~R~~~A-~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 348 ERHTQA-VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred cchHHH-HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 555555 44445544331 346677888888888888888877776665543 244455555442 2222 122346666
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 463 ELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
++++...+. -|.-....+.+...+...|+.++++.+++..... .||....+.|.+.+...+.+.+|.+.|..++..
T Consensus 425 kf~ek~L~~-~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI-NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc-CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 776666653 1122344555666666677777777777766653 467777777777777777777777777766664
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-06 Score=81.94 Aligned_cols=105 Identities=14% Similarity=0.091 Sum_probs=82.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCC
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGY 210 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~ 210 (638)
.++....|+++.|+.+|.+.+... +++...|+.-..+|...|++++|++=-.+-.+. .|+ +..|+....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 345667889999999998888764 447777888888899999999888877666665 344 4678888888888899
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
+++|+.-|.+-++..+ .+...++.+..++
T Consensus 86 ~~eA~~ay~~GL~~d~--~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP--SNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHHhhcCC--chHHHHHhHHHhh
Confidence 9999999998888765 5667777777776
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-07 Score=82.15 Aligned_cols=316 Identities=14% Similarity=0.087 Sum_probs=196.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH-HHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA-LISA 240 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-l~~~ 240 (638)
-+.+++..+.+..++++|++++..-.++.++ +......+...|....++..|.+.|+++.... |...-|.. -...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence 4566777778889999999999988887433 77788889999999999999999999998755 55555543 3566
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAK--IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+.+.+.+.+|+++...|.+. ++.. +...-.......+++..+..++++....| +..+.+...-...+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 77889999999999888763 2222 22222233456788889998888877543 4555555555667999999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH----HHHHHHHHhcCChHHHHHH
Q 006624 319 DAYGLFMNMLKE-GCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY----NTVIKSLFESKAPASEASA 393 (638)
Q Consensus 319 ~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~ll~~~~~~~~~~~a~~~ 393 (638)
+|.+-|+...+- |.. ....||..+.. .+.|+++.|++...++.++|++-.+..- ...+. .-..|+...
T Consensus 162 aAvqkFqaAlqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiD-vrsvgNt~~---- 234 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGID-VRSVGNTLV---- 234 (459)
T ss_pred HHHHHHHHHHhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCc-hhcccchHH----
Confidence 999999999885 454 56677765544 5678999999999999988765211100 00000 000011000
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 006624 394 WFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK-GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYC 472 (638)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 472 (638)
|..++ =...+|.-...+.+.++++.|.+-+-.|--+ ....|+.|...+.-.- -.+++.+..+-+.-+.+..
T Consensus 235 ----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n 306 (459)
T KOG4340|consen 235 ----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN 306 (459)
T ss_pred ----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC
Confidence 00000 1123444444566667777776666665422 1234555554432211 1233334444444444442
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 473 GCSSARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
. -...++..++-.||+..-++-|-.++.+-
T Consensus 307 P-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 307 P-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred C-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 2 34556666666677776666666666543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2e-06 Score=83.30 Aligned_cols=383 Identities=13% Similarity=0.045 Sum_probs=224.0
Q ss_pred ccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-PSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 180 (638)
.++.+.|+..|.-+.... ++|.+.|..-..+|...|+|++|.+=-..-++. .|+ +..|+....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHH
Confidence 367789999998887666 668899999999999999999998877766663 344 568999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH---HHHHHHHHhCCCC--CCCHHHHHHHHHHHHcc----------C
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI---HELYNEMCNEGNC--FPDTVTYSALISAFGKL----------G 245 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~----------g 245 (638)
.-|.+-.+.... +...++-+..++.......+. -.++..+...... ......|..++..+-+. .
T Consensus 91 ~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 91 LAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 999999887443 667777787777211100000 0011111100000 00011122222221110 0
Q ss_pred ChHHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 246 RDISAIRLFDE-----MKENG-------LQP------------T----------AKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 246 ~~~~A~~~~~~-----m~~~g-------~~~------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++..|.-.+.. +...| ..| | ..-...+.+...+..+++.|++-+..
T Consensus 170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~ 249 (539)
T KOG0548|consen 170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK 249 (539)
T ss_pred HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 11111111100 00000 111 0 11234566677777788888888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHccCCHHHHHHHHHHHHH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN-------NLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..... -+...++....+|...|.+.++....+..++.|-. ...-|+ .+..+|.+.++++.|...|.+...
T Consensus 250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 77765 36666667777788888888877777776665533 222222 233456666778888888887665
Q ss_pred CCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 365 LQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA 443 (638)
Q Consensus 365 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 443 (638)
....|+...-..... ++ ....+.. .-+.|.. .-...-...+.+.|++..|+..|.+++... |.|..
T Consensus 327 e~Rt~~~ls~lk~~E---------k~-~k~~e~~--a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~ 393 (539)
T KOG0548|consen 327 EHRTPDLLSKLKEAE---------KA-LKEAERK--AYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDAR 393 (539)
T ss_pred hhcCHHHHHHHHHHH---------HH-HHHHHHH--HhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhH
Confidence 444443322221111 11 1111111 1112221 111122556777788888888888887776 77777
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.|+...-+|.+.|.+..|++-.+...+. .++....|..=..++....++++|++.|.+..+.
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydkAleay~eale~ 455 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL 455 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7888888888888888777776666665 3344444555555555566777777777776664
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.2e-05 Score=80.44 Aligned_cols=282 Identities=17% Similarity=0.189 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCF-PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
|+..-...+.+++..+-+.+-+++++++.-.+... .+...-|.|+-...+. +.....++.+++.... .|+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------H
Confidence 44445555566666666666666666655432211 1112223333333332 2223344444433221 111 2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
.......+-+++|..+|++.-. +....+.||. ..+.++.|.++-++.- ....|..+..+-.+.|.+
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v 1120 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLV 1120 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCch
Confidence 2333344445555555544321 2333333332 1233333333332221 233445555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
.+|.+-|-+. .|+..|...+....+.|.+++- ..++....+..-.|... +.|+-+|++.++..+..+++
T Consensus 1121 ~dAieSyika------dDps~y~eVi~~a~~~~~~edL-v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-- 1189 (1666)
T KOG0985|consen 1121 KDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL-VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-- 1189 (1666)
T ss_pred HHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH-HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh--
Confidence 5554444332 2344444555554444444443 33333333332223222 23444455555544433322
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 433 MEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV 512 (638)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 512 (638)
.-|+......+.+-|...|.++.|.-+|... .-|..|...+...|+++.|...-++. .+.
T Consensus 1190 -----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ 1249 (1666)
T KOG0985|consen 1190 -----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NST 1249 (1666)
T ss_pred -----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cch
Confidence 1344444444455555555555544444332 22445555555555555555443332 234
Q ss_pred hhHHHHHHHHHHcCCH
Q 006624 513 YTYNALMSGMVRAGMI 528 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~ 528 (638)
.||.-+-.+|...+.+
T Consensus 1250 ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEF 1265 (1666)
T ss_pred hHHHHHHHHHhchhhh
Confidence 4555555555444433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-06 Score=85.33 Aligned_cols=201 Identities=11% Similarity=-0.027 Sum_probs=135.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC-VMGP-SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|...+++..+..+. +...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-
Confidence 355677777777777888887666666544321 2222 22223344567789999999999998876433 4444442
Q ss_pred HHHHHh----cCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 202 ILMLMQ----EGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
...+.. .+..+.+.+.++...... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~ 158 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPEN---PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL 158 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 223333 344555555554421211 33 3445566778888999999999999999874 44567788889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 277 FKLGEVEKALGLVQEMKGKGCA-LT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...|++++|...+++....... ++ ...|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 9999999999999988775432 22 234567888899999999999999998654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-06 Score=84.72 Aligned_cols=443 Identities=9% Similarity=-0.005 Sum_probs=233.8
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHH
Q 006624 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 220 (638)
...+...|-+.++.. +.-...|..+...|....+...|.+.|.+.-+.+.. +...+-...+.|++...++.|.++.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444422 111235666666666666677777777777665433 566667777777777777777777333
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 221 MCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300 (638)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 300 (638)
.-+..+...-...|....-.+...++...|..-|+...+.. +-|...|..+..+|...|++..|+++|.+....++. +
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s 629 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-S 629 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-h
Confidence 33222111111223334445556677777777777776653 336677777777777777777777777776665332 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-------CCC
Q 006624 301 VYTYTELIKGLGRAGRVEDAYGLFMNMLKEG------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEA-------LQC 367 (638)
Q Consensus 301 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~ 367 (638)
...---..-..+..|.+.+|+..+...+... ..--..++..+...+.-.|-..+|..++++-.+ ...
T Consensus 630 ~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~ 709 (1238)
T KOG1127|consen 630 KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL 709 (1238)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh
Confidence 1111112233456777777777776665421 111122222233333333333444444433222 111
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHhCCCCCC
Q 006624 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRV---E---KAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 368 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~~~~~~ 441 (638)
..+...|-.+-.+ ...|.... .. .|+.....++..-.-..+.. + -+.+.+-.-.+ ...+
T Consensus 710 ~~~~~~Wi~asda-----------c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~ 774 (1238)
T KOG1127|consen 710 QSDRLQWIVASDA-----------CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIH 774 (1238)
T ss_pred hhhHHHHHHHhHH-----------HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hhhc
Confidence 1122222111111 11222222 11 22222222222212222222 1 11111111111 1223
Q ss_pred HhhHHHHHHHHHc-------cC-CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 442 PAAYCSLINGYGK-------AK-RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 442 ~~~~~~li~~~~~-------~g-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
+.+|..++..|.+ .+ +...|...+....+. ...+...|+.|.-. ...|.+.-|...|-+-.... +....
T Consensus 775 ~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L-~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 775 MYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSL-CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred cchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH-hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchh
Confidence 4445555444333 12 334677888877775 34566677777655 66677777777776655442 44677
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh--h--CCCCCCHHHHHHHH
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ--H--SEIKPDAVSYNTIL 589 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~--~--~~~~p~~~~~~~l~ 589 (638)
+|..+.-.+.+..+++.|...|...+... +.|...|-.........|+.-++..+|..-. . .|--|+..-|-+..
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 88888888889999999999999988753 2356667655555567788888888887722 1 24445555555554
Q ss_pred HHHHhcCCHHHHHHHHH
Q 006624 590 GCLSRAGMFEEAARLMK 606 (638)
Q Consensus 590 ~~~~~~g~~~~A~~~~~ 606 (638)
..-...|+.++-+...+
T Consensus 931 e~h~~Ng~~e~~I~t~~ 947 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTAR 947 (1238)
T ss_pred HHHHhccchHHHHHHhh
Confidence 55556677665544433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-06 Score=94.92 Aligned_cols=335 Identities=13% Similarity=0.042 Sum_probs=176.2
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC------ALT--VYTYTELIKGLG 312 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~~--~~~~~~li~~~~ 312 (638)
+...|+++.+...++.+.......+..........+...|++++|...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566665555555442111111222223334444556666666666655543200 001 111122233445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHCCCC---C--CHhHHHHHHHHHHh
Q 006624 313 RAGRVEDAYGLFMNMLKEGCKPDI----VLINNLINVLGRAGRLEDALKLFNKMEALQCK---P--NVVTYNTVIKSLFE 383 (638)
Q Consensus 313 ~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~ll~~~~~ 383 (638)
..|++++|...+++..+.-...+. ...+.+...+...|++++|...+++....... + ....+..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 666677776666666542111111 23344555566667777666666665432110 1 11223333344455
Q ss_pred cCChHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHhhHHHHHHHH
Q 006624 384 SKAPASEASAWFEKMKA----NGVL--P-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG--FPP--CPAAYCSLINGY 452 (638)
Q Consensus 384 ~~~~~~a~~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~li~~~ 452 (638)
.|+..++ ...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+
T Consensus 544 ~G~~~~A-~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 544 QGFLQAA-YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred CCCHHHH-HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 5665555 333333222 2211 1 12334455566777789998888888765421 111 233444566677
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCc-HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHH
Q 006624 453 GKAKRYEAANELFLELKEYCGCSS-ARVY-----AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMV 523 (638)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~ 523 (638)
...|+.++|.+.+..+........ ...+ ...+..+...|+.+.|...+............ ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 788899988888887754211110 0101 11224445578888888887765442111111 11345666777
Q ss_pred HcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006624 524 RAGMIDDAYSLLRRMEED----GCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
..|++++|...+++.... |..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 889999998888887753 22222 345666777788899999999999888763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.7e-06 Score=74.62 Aligned_cols=331 Identities=11% Similarity=0.041 Sum_probs=212.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHH-HHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANT-YNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 201 (638)
.++.-...+.+.+..+|++.+|+.-|...+..+ +.+-.++..-...|...|+..-|+.=+.++.+. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 355566678888999999999999999887632 223334455566788889999999989888886 566443 2335
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...+.++|++++|..-|+..++..+ +..+ ...+..+.--.++-.. ....+..+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~---s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEP---SNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGD 170 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCC---Ccch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCc
Confidence 5778899999999999999998764 2211 1111111111111111 1223344566788
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
...|+.....+++..+- |...|..-..+|...|++..|+.-++...+..- -++.++..+...+...|+.+.++...++
T Consensus 171 ~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRE 248 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRE 248 (504)
T ss_pred hhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 88888888888887554 778888888889999999988887777766533 3666777777888888999888888888
Q ss_pred HHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPC 441 (638)
Q Consensus 362 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 441 (638)
..+.+ ||....-..-..+-+ +...++.| ......++|.++++-.+...+......
T Consensus 249 CLKld--pdHK~Cf~~YKklkK-------v~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep~~~ 303 (504)
T KOG0624|consen 249 CLKLD--PDHKLCFPFYKKLKK-------VVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEPEET 303 (504)
T ss_pred HHccC--cchhhHHHHHHHHHH-------HHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCCccc
Confidence 87744 665432221111100 01111111 223455667777777776665532212
Q ss_pred Hh---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 442 PA---AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 442 ~~---~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
.. .+..+-.++...+++.+|++...+++.. .+.|+.++..-..+|.-...++.|+.-|+...+.
T Consensus 304 ~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~-d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 304 MIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI-DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ceeeeeeheeeecccccCCHHHHHHHHHHHHhc-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 22 2333445556667777777777777663 3344666666677777777777777777777664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.3e-06 Score=92.77 Aligned_cols=371 Identities=13% Similarity=-0.034 Sum_probs=225.7
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 238 ISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
...+...|++.+|....... +..+. ..........+...|+++.+...++.+.......+..........+...|+
T Consensus 348 a~~~~~~g~~~~Al~~a~~a---~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~ 424 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAA---GDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHR 424 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHC---CCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCC
Confidence 34455566666665533332 11100 111222334455678888888877765322111122233344555668899
Q ss_pred HHHHHHHHHHHHHcCC------CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH----hHHHHHHHHHHhc
Q 006624 317 VEDAYGLFMNMLKEGC------KPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV----VTYNTVIKSLFES 384 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~------~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~ 384 (638)
+++|...+......-. .+. ......+...+...|++++|...++.........+. ...+.+...+...
T Consensus 425 ~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~ 504 (903)
T PRK04841 425 YSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK 504 (903)
T ss_pred HHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc
Confidence 9999999988765311 111 122233445667899999999999998763211121 2334444455667
Q ss_pred CChHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC---CHhhHHHHHHHH
Q 006624 385 KAPASEASAWFEKMKAN----GVL-PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK----GFPP---CPAAYCSLINGY 452 (638)
Q Consensus 385 ~~~~~a~~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~---~~~~~~~li~~~ 452 (638)
|+..++ ...+++.... |.. ....++..+...+...|+++.|...+++.... +... ....+..+...+
T Consensus 505 G~~~~A-~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~ 583 (903)
T PRK04841 505 GELARA-LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL 583 (903)
T ss_pred CCHHHH-HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 887776 5555555432 111 11234455677788999999999999886542 2111 223445566677
Q ss_pred HccCCHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhH-----HHHHHHH
Q 006624 453 GKAKRYEAANELFLELKEY----CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK-PDVYTY-----NALMSGM 522 (638)
Q Consensus 453 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l~~~~ 522 (638)
...|++++|...+.+.... +.......+..+...+...|++++|...++........ .....+ ...+..+
T Consensus 584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (903)
T PRK04841 584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW 663 (903)
T ss_pred HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence 7889999999999887653 11112344555667788899999999999887542101 111111 1122444
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHh
Q 006624 523 VRAGMIDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD-AVSYNTILGCLSR 594 (638)
Q Consensus 523 ~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~ 594 (638)
...|+.+.|...+........... ...+..+..++...|++++|...+++.... |..++ ..++..+..++.+
T Consensus 664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~ 743 (903)
T PRK04841 664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ 743 (903)
T ss_pred HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 568999999999877654221111 112345677788999999999999998752 33322 3466777888999
Q ss_pred cCCHHHHHHHHHHHHhCC
Q 006624 595 AGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 595 ~g~~~~A~~~~~~m~~~~ 612 (638)
.|+.++|.+.+.+..+..
T Consensus 744 ~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 744 QGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHh
Confidence 999999999999988753
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.2e-05 Score=70.73 Aligned_cols=302 Identities=13% Similarity=0.104 Sum_probs=161.1
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI-YTTL 272 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~l 272 (638)
++.-..-+...+...|++.+|+..|...++-++ .+-.++..-...|...|+...|+.-+...++. +||-.. -..-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp--~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP--NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc--hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344445566666777777777777777766332 22233344445666677777777777777663 455332 2223
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTV--------------YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~--------------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
...+.+.|.++.|..=|+..++..+.-.. ......+..+...|+...|+.....+++..+- |...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 34566777777777777777766432110 11112233444556666666666666654222 4555
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (638)
+..-..+|...|+...|+.=++...+.... +..++--+-..+.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-------------------------------------nTe~~ykis~L~Y 234 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-------------------------------------NTEGHYKISQLLY 234 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-------------------------------------chHHHHHHHHHHH
Confidence 555555666666666665555444332211 2222223333344
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhh-HH---HH---------HHHHHccCCHHHHHHHHHHHHHcCCCCcH---HHHHH
Q 006624 419 KTNRVEKAHLLLEEMEEKGFPPCPAA-YC---SL---------INGYGKAKRYEAANELFLELKEYCGCSSA---RVYAV 482 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~~~~~~~~~~-~~---~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ 482 (638)
..|+.+.++...++-++.+ ||... |. .+ +......+++.++.+-.+...+....... ..+..
T Consensus 235 ~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 4444444444444444332 22211 10 00 11123345555566666666554332112 22344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
+-.+|...|++.+|++.-.+..+. .|| +.++.--..+|.-..+++.|+.-|+.+.+.
T Consensus 313 ~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 313 LCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred eeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 455666667777777777777664 344 666666667777777777777777777765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.93 E-value=0.0001 Score=75.16 Aligned_cols=51 Identities=14% Similarity=0.140 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006624 527 MIDDAYSLLRRMEEDGCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 577 (638)
|..+.+.-...|.+...-|| ...|..+|..+....++..|.+.+.+|..+-
T Consensus 1306 D~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~ 1360 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKV 1360 (1416)
T ss_pred hHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcC
Confidence 55556666666766544443 4578889999999999999999999998753
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.5e-06 Score=81.98 Aligned_cols=267 Identities=18% Similarity=0.204 Sum_probs=166.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
.+.+.....++.+|+.+++.+..... -...|..+.+.|...|+++.|.++|.+. ..++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 45556677888999999988876643 3456777888999999999999998653 246677889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 431 (638)
+++|.++-.+.. |.......|-.-..-+-..|+..++ ++++-.+. .|+ ..|..|-+.|..+..+++.+
T Consensus 807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~ea-eqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEA-EQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhh-hheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHH
Confidence 999999887754 3333445555444455555665555 33322211 233 24677888888888877776
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH--------
Q 006624 432 EMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM-------- 503 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------- 503 (638)
+-... .-..|...+..-|-..|++..|...|-+... |..-+++|-..+-|++|.++-+.-
T Consensus 875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~ 942 (1636)
T KOG3616|consen 875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKH 942 (1636)
T ss_pred HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHH
Confidence 54322 2234566677778888999999888876654 456667777777777776665421
Q ss_pred ------HhCCCCCCHhhH------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 504 ------KKLRCKPDVYTY------NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 504 ------~~~~~~p~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
...|-..-+... ..-++.-+..+.++-|.++-+-..+.. .|.+ ...+..-+-..|++++|.+.+-
T Consensus 943 v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~v--hlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen 943 VAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEV--HLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred HHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccc--hhHHhhhhhhccchhhhhHhhH
Confidence 111100001111 111222334455555555555444432 1222 2234445678899999988887
Q ss_pred HhhhC
Q 006624 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+.++.
T Consensus 1020 eaikl 1024 (1636)
T KOG3616|consen 1020 EAIKL 1024 (1636)
T ss_pred HHhhc
Confidence 77653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.5e-06 Score=84.98 Aligned_cols=261 Identities=13% Similarity=0.086 Sum_probs=144.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
..-+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+++.++..+. +..+...|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34456788888888888888877665 7778888888888888888888888888876544 677777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
..|.+.++.......+ |..+ ......+. ....+-.++...+ .+..++|-+
T Consensus 370 ~~Al~~L~~Wi~~~p~-----y~~l-----~~a~~~~~-------~~~~~s~~~~~~l-------------~~i~~~fLe 419 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPK-----YVHL-----VSAGENED-------FENTKSFLDSSHL-------------AHIQELFLE 419 (579)
T ss_pred HHHHHHHHHHHHhCcc-----chhc-----cccCcccc-------ccCCcCCCCHHHH-------------HHHHHHHHH
Confidence 8888888877553311 0000 00000000 0000001121111 112222222
Q ss_pred -HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 433 -MEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD 511 (638)
Q Consensus 433 -~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 511 (638)
....+..+|+.++..|.-.|.-.|++++|.+.|+.++.. -|.|..+||.|...++...+.++|+..|.+..+. .|+
T Consensus 420 aa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v-~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~ 496 (579)
T KOG1125|consen 420 AARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV-KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPG 496 (579)
T ss_pred HHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc-CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCC
Confidence 223332355555555555555566666666666665553 3345555666666666666666666666666553 344
Q ss_pred -HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 512 -VYTYNALMSGMVRAGMIDDAYSLLRRMEED---------GCVPDINSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 512 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~p~~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
+...-.|.-+|...|.+++|.+.|-+++.. +..++...|..|=.++.-.++.|-+.+
T Consensus 497 yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 497 YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 222233444556666666666655544421 111234455555555555555554433
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.9e-07 Score=88.05 Aligned_cols=148 Identities=17% Similarity=0.180 Sum_probs=69.1
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH--c--C
Q 006624 451 GYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR--A--G 526 (638)
Q Consensus 451 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~--g 526 (638)
.+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.. .| .+...+..++.. . +
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCch
Confidence 344445555555444321 233444445555555555555555555555432 22 222223333221 1 2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLM 605 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~ 605 (638)
.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++++....+. -|+.+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 355566666665443 344555555555555666666666666555554321 1344455555555555555 4445555
Q ss_pred HHHH
Q 006624 606 KDMN 609 (638)
Q Consensus 606 ~~m~ 609 (638)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 5554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-06 Score=80.80 Aligned_cols=215 Identities=9% Similarity=0.034 Sum_probs=147.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
++..+-.++...++.++|+.+..+++... +-+..+|+.-..++.+.| ++++++..++++.+..++ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 44444455566677788888888877742 334456666666666666 578888888888877554 666777766666
Q ss_pred HhcCCH--hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---C
Q 006624 206 MQEGYY--EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---G 280 (638)
Q Consensus 206 ~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g 280 (638)
.+.|+. +++++.++++.+.++ .|..+|+...-.+...|+++++++.++++++.+. .|..+|+.....+.+. |
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp--kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~ 193 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA--KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG 193 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc
Confidence 666653 677888888888765 6777888888888888888888888888888653 4667777766665554 2
Q ss_pred C----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006624 281 E----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348 (638)
Q Consensus 281 ~----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 348 (638)
. .+++++...+++...+. |...|+-+...+... +...+|.+.+.+....++. +......|++.|+.
T Consensus 194 ~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 194 GLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred cccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 2 24667777677766654 666777666666652 3446677777777665433 66677778888775
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-07 Score=88.38 Aligned_cols=250 Identities=13% Similarity=0.073 Sum_probs=129.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+.-.|++..++.-.+ ..............-+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666655444 111111112334455666677777665443 3333322 45555554444444333445555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
+.-+++.........+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555544433321122233333334555667777777776532 3556666677777777778777777777776
Q ss_pred CCCCCCHHHHHHHHHH----HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCC
Q 006624 295 KGCALTVYTYTELIKG----LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370 (638)
Q Consensus 295 ~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 370 (638)
.+ .|. +...+..+ ....+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+.. +
T Consensus 160 ~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~ 234 (290)
T PF04733_consen 160 ID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-D 234 (290)
T ss_dssp CS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-H
T ss_pred cC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-C
Confidence 53 232 22333332 22334577788888876554 4557777777777777778888888777776554322 3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 371 VVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
..+...++-.....|+..+.+.+++.++..
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 344444554555555554444555555554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=1e-06 Score=77.72 Aligned_cols=178 Identities=15% Similarity=0.088 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
.+..+...... .+-+..+ ....+.+.-.|+-+.+..+........+ -+....+..+....+.|++.+|...|.+..
T Consensus 52 a~~al~~~~~~--~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 52 AAAALGAAVLR--NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred HHHHHHHHHhc--CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 44444444443 2334455 6666777777777777777776554422 266666678888888888888888888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006624 223 NEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+ +|...|+.+.-+|.+.|++++|..-|.+..+.- .-+....|.|.-.+.-.|+++.|..++......+.. |..
T Consensus 128 ~l~p--~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~ 203 (257)
T COG5010 128 RLAP--TDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSR 203 (257)
T ss_pred ccCC--CChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chH
Confidence 8665 788888888888888888888888888887752 335677788888888888888888888887766544 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 303 TYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.-..+.......|++++|..+-..-.
T Consensus 204 v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 204 VRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHhhcCChHHHHhhccccc
Confidence 66677777788888888877765543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-05 Score=79.67 Aligned_cols=137 Identities=17% Similarity=0.229 Sum_probs=71.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 343 INVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR 422 (638)
Q Consensus 343 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 422 (638)
+.+.....++.+|+.+++.+..... ...-|..+...|...|+.. .++++|.+. ..++-.|..|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe-~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE-IAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH-HHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3344455666677777766655331 1122223333333333333 335444322 124455667777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
++.|.++-.+... .......|.+-..-+-+.|++.+|.+++-.+.. |+ ..|.+|-+.|..++.+++.++
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHH
Confidence 7777776655442 233445555555556666777766666544322 22 234556666666666665554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-06 Score=83.56 Aligned_cols=189 Identities=16% Similarity=0.127 Sum_probs=135.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG 488 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 488 (638)
.|..++.+|+..|+..+|..+..+..++ +|++..|..+++......-+++|.++.+..... .-..+.....
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~ 496 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLIL 496 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccc
Confidence 4556777888888888888887777763 778888888887777777777777777765442 1122222233
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 006624 489 KCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 567 (638)
+.++++++.+.|+.-.+.. +-...+|-.+..+..+.++++.|.+.|...... .|| ...||.+-.+|.+.|+-.+|.
T Consensus 497 ~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred cchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 4678888888887766543 334667777777777888888888888887764 344 677888888888888888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
..+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888888765 33555677777777888888888888887764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.1e-06 Score=82.76 Aligned_cols=249 Identities=12% Similarity=0.083 Sum_probs=181.3
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
.-+.++|+..+|.-.|+..++.+ |-+...|-.|.......++-..|+..+.+..+..+. |......|...|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence 34567888888888888888764 556788888888888888888899988888887554 7788888888899899888
Q ss_pred HHHHHHHHHHhCCCCC-------CCHHHHHHHHHHHHccCChHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 213 KIHELYNEMCNEGNCF-------PDTVTYSALISAFGKLGRDISAIRLFDEMK-ENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
.|+..++..+...+.. ++...-.. +.+.....+....++|-++. ..+..+|..++..|.-.|.-.|++++
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 9998888876654310 01000000 12222333344555555544 45555788888889889999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
|.+.|+..+...+. |...||.|...++...+.++|+..|.+.++. .|. +.+...|.-.|...|.+++|.+.|-..+
T Consensus 449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999988766 8889999999999999999999999999885 343 3344557777888999999988877664
Q ss_pred HCC---------CCCCHhHHHHHHHHHHhcCChH
Q 006624 364 ALQ---------CKPNVVTYNTVIKSLFESKAPA 388 (638)
Q Consensus 364 ~~~---------~~p~~~~~~~ll~~~~~~~~~~ 388 (638)
... ..++...|.+|-.++...++.+
T Consensus 526 ~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 526 SMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 321 2234567777776666666654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.2e-06 Score=77.78 Aligned_cols=188 Identities=10% Similarity=-0.031 Sum_probs=133.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH--H
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA--N 196 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~ 196 (638)
......+..+...+...|++++|...++++.... +.++ .++..+..++.+.|++++|...|+++.+..+.... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456788889999999999999999999988743 2222 46788889999999999999999999876433121 2
Q ss_pred HHHHHHHHHHhc--------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006624 197 TYNSMILMLMQE--------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
++..+..++.+. |++++|.+.|+++....+. +...+..+..... ... .. ...
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~a~~~~~~----~~~------~~--------~~~ 168 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN--SEYAPDAKKRMDY----LRN------RL--------AGK 168 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC--ChhHHHHHHHHHH----HHH------HH--------HHH
Confidence 566666666654 7889999999999887642 2222222211100 000 00 011
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
...+...+.+.|++++|...++......+. .....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 235667788999999999999998876432 23567888899999999999999988888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.4e-05 Score=74.87 Aligned_cols=211 Identities=13% Similarity=0.076 Sum_probs=158.1
Q ss_pred HHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 006624 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETR-MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (638)
+..++......+.|+.....+.... +-+..+|+....++...| ++++++..++.+.... +-+..+|+-....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHc
Confidence 3445555566677777777666544 445678888888888888 6799999999988754 45556677665556666
Q ss_pred CCH--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CCh-
Q 006624 174 KMV--NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRD- 247 (638)
Q Consensus 174 g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~- 247 (638)
|+. ++++.+++++.+...+ |..+|+....++...|+++++++.++++++.++ .|...|+.....+.+. |+.
T Consensus 120 ~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~--~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV--RNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC--CchhHHHHHHHHHHhcccccccc
Confidence 653 7789999999888655 889999999999999999999999999999876 6777777776666554 333
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 248 ---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 248 ---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
++++++..+++... +-|...|+.+...+... ++..+|.+.+.+..+.++. +......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHh
Confidence 46777777777763 45788899888888773 4456788888887776544 77788888888875
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00075 Score=70.04 Aligned_cols=222 Identities=11% Similarity=0.115 Sum_probs=140.5
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIR--CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKAL 180 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 180 (638)
++...|++-.....++.+ .. .|...++ .+.|.|..++|..+++..-..+ ..|..+...+-..|.+.|+.++|.
T Consensus 23 ~qfkkal~~~~kllkk~P--n~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHP--NA--LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred HHHHHHHHHHHHHHHHCC--Cc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence 345667776666665542 22 2223333 3578999999998888765544 348888999999999999999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-C---------hHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-R---------DISA 250 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A 250 (638)
.+|++.... .|+..-...+..+|.+.+.+.+-.+.--++-+.-+ .+...+=++++...+.- . ..-|
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p--k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP--KRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--cccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 999999877 56677777788888888887664444444444332 33444444444444321 1 1235
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 251 IRLFDEMKENG-LQPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 251 ~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.+.++.+.+.+ ---+..-...-...+...|.+++|++++ ....+.-..-+...-+.-++.+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55666666543 1112222223334555678899999988 334333333344444556777888888988888888888
Q ss_pred HcCCC
Q 006624 329 KEGCK 333 (638)
Q Consensus 329 ~~~~~ 333 (638)
..|..
T Consensus 254 ~k~~D 258 (932)
T KOG2053|consen 254 EKGND 258 (932)
T ss_pred HhCCc
Confidence 87654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-08 Score=59.10 Aligned_cols=32 Identities=38% Similarity=0.672 Sum_probs=19.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 577 EIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
|+.||..||+++|++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=85.80 Aligned_cols=239 Identities=12% Similarity=0.094 Sum_probs=166.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.+...+..|+..+...+++++|.++.+...+..+. ....|..+...+.+.++.+++.-+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------- 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID------------- 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh-------------
Confidence 445678888888888888999999888877766322 334444455566777776655554 3322
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
......++.-...+...|.+.+ -+..++..++.+|-+.|+.++|..+++++++.++. |+.+.|.+...|... +
T Consensus 92 ---~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 92 ---SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-D 164 (906)
T ss_pred ---hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-h
Confidence 2222333323333333444432 35558888999999999999999999999998855 888999999999888 9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh-HHHHHHHHHHhcCChHHHHHHHH
Q 006624 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV-TYNTVIKSLFESKAPASEASAWF 395 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~ 395 (638)
+++|.+++.+.+.. |...+++..+.+++.++.... |+.. .+-.++
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~----------------- 210 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIE----------------- 210 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHH-----------------
Confidence 99999988887654 666778899999999988743 3322 222222
Q ss_pred HHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 396 EKMKAN-GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG 453 (638)
Q Consensus 396 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 453 (638)
+.+... |..--..++-.+...|-..++++++..+++.+.+.. +.|..+..-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 222221 222334567778888999999999999999999986 667777888888776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.7e-06 Score=76.88 Aligned_cols=189 Identities=13% Similarity=0.055 Sum_probs=123.9
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P-TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VT 233 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~ 233 (638)
......+...+..+.+.|++++|...|+++....+. | ...++..+..++.+.|++++|+..|+++.+..+..+.. .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888888888888888888888776332 1 12466778888888888888888888888766532322 23
Q ss_pred HHHHHHHHHcc--------CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006624 234 YSALISAFGKL--------GRDISAIRLFDEMKENGLQPTA-KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~--------g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 304 (638)
+..+...+... |+.++|.+.++.+.+.. |+. ..+..+..... ... .. ....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~------~~--------~~~~ 169 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRN------RL--------AGKE 169 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHH------HH--------HHHH
Confidence 44555555543 66777888887777652 332 22221111100 000 00 0111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-DIVLINNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
..+...+.+.|++++|...++..++.... | ....+..+..++.+.|++++|...++.+...
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 24556788899999999999998876321 2 3567888899999999999999988887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-05 Score=85.73 Aligned_cols=204 Identities=10% Similarity=0.080 Sum_probs=112.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCV----MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
.++..|-..+.-....++.+.|.++.++++..--. .-..+|.++++.-..-|.-+...++|+++.+. ...-..|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 35566666666666666666666666666554111 11235555555555555555666666666554 1122345
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTLVSI 275 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~ 275 (638)
..|...|.+..++++|-++++.|.+... .....|..++..+.+..+-+.|..++.+..+. -|. .......+..
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 5556666666666666666666665443 34555666666666666666666666655543 122 2233344444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
-.+.|+.+.+..+|+..+..-+. -...|+..|+.-.+.|+.+.+..+|++.+..+..
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 55566666666666555554332 4455566666666666666666666666555444
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00061 Score=66.61 Aligned_cols=175 Identities=14% Similarity=0.106 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 458 YEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 458 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.+++..+++.....-...+..+|..+.+.--..- ..+.....++++...-...-..+|-.++....+..-.+.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4566666666655433334444444443222222 2556667777766543222245677788888888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 535 LRRMEEDGCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 535 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
|.++.+.+..+ ++...++++.-+|. ++.+-|.++|+--... ..-++.--...++-+.+.++-+.|..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999987777 67778888886664 7889999999986653 222344445788888999999999999999998877
Q ss_pred CCCH--hhHHHHHHHHhccCCcc
Q 006624 614 EYDQ--ITYSSILEAVGKVDEDR 634 (638)
Q Consensus 614 ~p~~--~~~~~l~~~~~~~g~~~ 634 (638)
.||. .+|..+|+-=...|+..
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHH
Confidence 7666 48999998877777754
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.3e-08 Score=57.90 Aligned_cols=32 Identities=38% Similarity=0.820 Sum_probs=18.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006624 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 542 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
|+.||..||++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45556666666666666666666666655555
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-05 Score=85.47 Aligned_cols=149 Identities=8% Similarity=0.004 Sum_probs=129.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006624 120 NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
.+++++.++-.|..+..+.|.+++|..+++..... .+-+.......+..+.+.+++++|...+++.....+. +...++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~-~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR-FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence 45788999999999999999999999999999885 2556678889999999999999999999999988655 788889
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
.+..++.+.|++++|.++|+++...++ .+..++..+...+-+.|+.++|...|+...+.- .+....|+..+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p--~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHP--EFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 999999999999999999999998554 458899999999999999999999999998752 34555655444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-05 Score=82.98 Aligned_cols=236 Identities=10% Similarity=0.049 Sum_probs=163.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKS-IQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
++.....+=.++..-|..++|-+- +++.. .++...++-....+++.-....... +..++..+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHH
Confidence 444444455566666776666433 33222 2333333333333333333333333 455789999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
.+..+.|.+++|..+++...+..+ .+......+...+.+.+++++|+...++..+.. +-+....+.+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~P--d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFP--DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcch
Confidence 999999999999999999999775 567788888999999999999999999999874 34677888889999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
++|..+|++....++. +..++..+...+...|+.++|...|+...+. ..|....|+.++ +++..-..+++.+
T Consensus 171 ~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~~~~~~~~~~~~~ 242 (694)
T PRK15179 171 EQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------VDLNADLAALRRL 242 (694)
T ss_pred HHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------HHHHHHHHHHHHc
Confidence 9999999999985443 6889999999999999999999999999876 233445555443 3344455566665
Q ss_pred HHC----CCCCCHhHHHHHHHHHHh
Q 006624 363 EAL----QCKPNVVTYNTVIKSLFE 383 (638)
Q Consensus 363 ~~~----~~~p~~~~~~~ll~~~~~ 383 (638)
... |...........|..+-.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 243 GVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred CcccccCCCceeeeeHHHHHHHHhh
Confidence 433 223334445555544433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.3e-05 Score=66.59 Aligned_cols=246 Identities=15% Similarity=0.111 Sum_probs=136.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH-H
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH-E 216 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~ 216 (638)
.|+|..++......... +.++..-.-+.++|...|.+..... +++... .|.......+...+...++-+.-+ +
T Consensus 21 ~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~~~~~~ 94 (299)
T KOG3081|consen 21 LGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKKSILAS 94 (299)
T ss_pred hhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhHHHHHH
Confidence 45555554444433221 1333444445556666665443332 222221 233333333333333344433333 3
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 217 LYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
+.+.+...... .+......-...|+..|++++|++...... +......=...+.+..+.+-|.+.+++|.+..
T Consensus 95 l~E~~a~~~~~-sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id 167 (299)
T KOG3081|consen 95 LYELVADSTDG-SNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID 167 (299)
T ss_pred HHHHHHhhccc-hhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 33334332221 232333344456777778888877766511 33333333455667777788888888887652
Q ss_pred CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHh
Q 006624 297 CALTVYTYTELIKGLG----RAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVV 372 (638)
Q Consensus 297 ~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 372 (638)
+..+.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..+++.......+ +..
T Consensus 168 ---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpe 242 (299)
T KOG3081|consen 168 ---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPE 242 (299)
T ss_pred ---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHH
Confidence 5556665555544 345677888888888764 5667777787888888888888888888887775533 455
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhC
Q 006624 373 TYNTVIKSLFESKAPASEASAWFEKMKAN 401 (638)
Q Consensus 373 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 401 (638)
+...++-.....|...++..+.+.++...
T Consensus 243 tL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 243 TLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 55555555556666666656666666554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.1e-05 Score=81.81 Aligned_cols=232 Identities=13% Similarity=0.036 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHC-CCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 337 VLINNLINVLGRAGRLEDALKLFNKMEAL-QCKP---NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
..|-..+......++.++|.++.+++... +.+- -...|.+++.....-|. ++...++|++..+.- -....|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~-eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGT-EESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCc-HHHHHHHHHHHHHhc--chHHHHHH
Confidence 33444444444445555555555444321 0000 11233333333222332 222255555554431 11234566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcC
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SSARVYAVMIKHFGKCG 491 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g 491 (638)
|...|.+.+.+++|.++++.|.++- .-....|...++.+.+.++-+.|..++.++.+.-.. .........+..-.+.|
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence 7777777777777777777777652 355667777777777777777777777777764211 13444555556666777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEI 569 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 569 (638)
+.+.+..+|+...... +.-...|+.+++.-.++|+.+.+..+|++.+..++.|. -..|...+..=-+.|+-+.+..+
T Consensus 1615 DaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 8788777887776542 33456777778877788888888888888887776665 34455555555555665444443
Q ss_pred HHHh
Q 006624 570 FTKM 573 (638)
Q Consensus 570 ~~~m 573 (638)
=.++
T Consensus 1694 KarA 1697 (1710)
T KOG1070|consen 1694 KARA 1697 (1710)
T ss_pred HHHH
Confidence 3333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.7e-06 Score=69.54 Aligned_cols=96 Identities=14% Similarity=-0.035 Sum_probs=51.6
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
+..+...+.+.|++++|.+.|+......+ .+...|..+...+.+.|++++|...|+...+.. +.+...+..+..++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33445555555555555555555555443 445555555555555555555555555555542 234555555555555
Q ss_pred hcCCHHHHHHHHHHHHhCC
Q 006624 278 KLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~~ 296 (638)
..|++++|...|+...+..
T Consensus 104 ~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.57 E-value=4.1e-05 Score=67.77 Aligned_cols=173 Identities=12% Similarity=0.114 Sum_probs=103.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..+.+.+.......+......-...|+..|++++|++..... .+......-+..+.+..+++-|.+.+++|.+.
T Consensus 93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 334444444433333333333445577778888887776652 12333444455566677777777777777764
Q ss_pred CCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006624 472 CGCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 547 (638)
.+..+.+.|..++.+ .+.+.+|.-+|++|.++ .+|+..+.+....++...|++++|..++++++.+... ++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CH
Confidence 345566666666554 34577777777777664 3577777777777777777777777777777766432 56
Q ss_pred HHHHHHHHHHHhcCCHHH-HHHHHHHhhh
Q 006624 548 NSHNIILNGLAKSGGPKR-AMEIFTKMQH 575 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~-A~~~~~~m~~ 575 (638)
.+...++..-...|...+ -.+.+.+++.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 666555555555554433 3444555543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.8e-05 Score=70.09 Aligned_cols=165 Identities=15% Similarity=0.054 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
|... ..+-..+...|+-+....+........+ .|.......+....+.|++.+|...+.+..... ++|...|+.+.
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lg 141 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLG 141 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHH
Confidence 3444 5566777778888888888887666444 566777779999999999999999999998764 67899999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 353 (638)
-+|.+.|++++|..-|.+..+..+. +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChH
Confidence 9999999999999999999887655 6778888888899999999999999998887544 7777788888899999999
Q ss_pred HHHHHHHHHHH
Q 006624 354 DALKLFNKMEA 364 (638)
Q Consensus 354 ~A~~~~~~~~~ 364 (638)
+|.++...-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99988776443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.0017 Score=67.61 Aligned_cols=223 Identities=12% Similarity=0.111 Sum_probs=159.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNI--LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
...+++..|.......++. .|+. .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-..|-+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 3467888888888888774 3443 23333333 57899999999998888776655 88999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HH
Q 006624 214 IHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE----------VE 283 (638)
Q Consensus 214 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~ 283 (638)
|..+|++..... |+......+..+|.+.+++.+-.+.=-+|.+. ++-+...+=++++.+...-. ..
T Consensus 96 ~~~~Ye~~~~~~---P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 96 AVHLYERANQKY---PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 999999999876 77888888999999999887655554444443 33455566666666654321 34
Q ss_pred HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKG-CALTVYTYTELIKGLGRAGRVEDAYGLFM-NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 284 ~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
-|.+.++.+.+.+ .--+..-.......+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 5667777777664 22233333344556678899999999994 444443444555556677788888999998888888
Q ss_pred HHHCC
Q 006624 362 MEALQ 366 (638)
Q Consensus 362 ~~~~~ 366 (638)
+...+
T Consensus 252 Ll~k~ 256 (932)
T KOG2053|consen 252 LLEKG 256 (932)
T ss_pred HHHhC
Confidence 88766
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.4e-05 Score=71.13 Aligned_cols=120 Identities=12% Similarity=0.110 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HccCC--hHH
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF-GKLGR--DIS 249 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 249 (638)
.++.+++...+++..+.++. +...|..+...|...|++++|.+.|++..+..+ .+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcHH
Confidence 44555555556555554333 566666666666666666666666666666554 4555555555543 44454 366
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
|.+++++..+.. +-+..++..+...+.+.|++++|+..++++.+..
T Consensus 129 A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 666666666553 2245556666666666666666666666665543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-05 Score=70.11 Aligned_cols=120 Identities=10% Similarity=0.105 Sum_probs=87.9
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY-FKLGE--VEK 284 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~~~g~--~~~ 284 (638)
.++.+++...++..+..++ .|...|..+...+...|++++|...|++..+.. +.+...+..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P--~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANP--QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 5666777777777777665 677778888888888888888888888777764 33666777777653 56666 477
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
|.+++++..+.++. +...+..+...+.+.|++++|+..|+++++..
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 88888887777665 66777777777777888888888887777753
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=7.5e-05 Score=79.81 Aligned_cols=238 Identities=12% Similarity=0.104 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+...+..|+..+...+++++|.++.+...+..+. ....|-.+...+.+.++.+++..+ .+.. ..+...-|
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~----- 99 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKW----- 99 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccch-----
Confidence 4556677777777777777777777766654222 223333344456666666655554 2222 11111111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHH
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYE 459 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 459 (638)
..+..+...|.+. .-+...+..+..+|-+.|+.++|..+++++.+.. +.|+.+.+.+...|... +++
T Consensus 100 ---------~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 100 ---------AIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---------hHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 2223333444443 2344577888999999999999999999999988 88899999999999999 999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006624 460 AANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 460 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 539 (638)
+|.+++.++... |...+++.++..++.++.... |+...+ -..+.+++.
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~---------------f~~i~~ki~ 214 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDF---------------FLRIERKVL 214 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchH---------------HHHHHHHHH
Confidence 999998888763 666678888888888887753 332221 122222222
Q ss_pred HC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 006624 540 ED-GCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593 (638)
Q Consensus 540 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 593 (638)
.. |..--..++-.+...|....+++++..+++.+.+..-+ |.....-++.+|.
T Consensus 215 ~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 215 GHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred hhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 22 22223444555566667777777788877777764322 4555666666665
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.6e-06 Score=81.94 Aligned_cols=215 Identities=15% Similarity=0.090 Sum_probs=155.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
--.+...+...|-..+|..++++. ..+..++-+|...|+-.+|..+..+..++ +|+...|..+++....
T Consensus 401 q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence 345667777778888888777754 34566777888888888888887777764 6777788888777777
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
..-+++|.++++..... .-..+.......+++.++.+.|+.-.+.. +....+|..+..+..+.++++.|.+
T Consensus 470 ~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred hHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHH
Confidence 77778888877765332 12222233334678888888888776653 3466778888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.|.......+. +...||.+-.+|.+.|+-.+|...+.+..+.+.. +...|...+....+.|.+++|.+.+.++..
T Consensus 541 aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 88887766544 6778888888888888888888888888877633 555666667777788888888888887755
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=9.9e-06 Score=68.06 Aligned_cols=94 Identities=7% Similarity=-0.118 Sum_probs=53.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG 209 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 209 (638)
....++...|++++|...|+..+... +.+...+..+..++.+.|++++|...|++..+.++. +...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 44555556666666666666655532 345555555666666666666666666666554332 5555555666666666
Q ss_pred CHhHHHHHHHHHHhCC
Q 006624 210 YYEKIHELYNEMCNEG 225 (638)
Q Consensus 210 ~~~~A~~~~~~~~~~~ 225 (638)
++++|++.|+..+...
T Consensus 107 ~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 107 EPGLAREAFQTAIKMS 122 (144)
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6666666666665544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00036 Score=61.51 Aligned_cols=164 Identities=18% Similarity=0.228 Sum_probs=115.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
.|..++-+....|+.+.|...++++..+= +.+...-..-...+-..|++++|+++|+.+++.++ .|.+++-.-+...
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddp--t~~v~~KRKlAil 130 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDP--TDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCc--chhHHHHHHHHHH
Confidence 45556666777888888888888877652 21222222222234457888899999999888775 6777787777777
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVE 318 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~ 318 (638)
-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-..+. +...+..+.+.+.-.| +++
T Consensus 131 ka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHH
Confidence 7778777888877777765 5568888888888888888888888888888876544 5555666665554443 455
Q ss_pred HHHHHHHHHHHc
Q 006624 319 DAYGLFMNMLKE 330 (638)
Q Consensus 319 ~A~~~~~~~~~~ 330 (638)
-|.++|.+.++.
T Consensus 209 ~arkyy~~alkl 220 (289)
T KOG3060|consen 209 LARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHh
Confidence 677777777765
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00019 Score=69.38 Aligned_cols=112 Identities=15% Similarity=0.087 Sum_probs=50.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006624 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
+...|++++|+..+..+...- |.|+.......+.+.+.++.++|.+.++.+... .+......-.+..+|.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l-~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL-DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHhcCChHHH
Confidence 334455555555555544432 444444444444455555555555555444443 111133333444444444444444
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 006624 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDA 531 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 531 (638)
..+++...... +-|...|..|..+|...|+..++
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a 427 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA 427 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence 44444443331 23344444444444444444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00094 Score=58.96 Aligned_cols=180 Identities=13% Similarity=0.057 Sum_probs=102.9
Q ss_pred HHHHHHHHh---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006624 392 SAWFEKMKA---NG-VLPSPF-TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFL 466 (638)
Q Consensus 392 ~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 466 (638)
.+++..+.. .| ..++.. .|..++-+....|+.+.|..+++++...- |.+...-..-.-.+-..|++++|.++++
T Consensus 32 v~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~ 110 (289)
T KOG3060|consen 32 VQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYE 110 (289)
T ss_pred HHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHH
Confidence 555555543 22 334433 23444555566677777777777766552 4343333333334455667777777777
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006624 467 ELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 467 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 546 (638)
.+.+. .+.|..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++-.. +.+
T Consensus 111 ~lL~d-dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-P~n 187 (289)
T KOG3060|consen 111 SLLED-DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-PFN 187 (289)
T ss_pred HHhcc-CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC-CCc
Confidence 77665 3455555555555555566666666666666554 34566677777777777777777777777766542 223
Q ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHhhh
Q 006624 547 INSHNIILNGLAKSG---GPKRAMEIFTKMQH 575 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~ 575 (638)
+-.+..+...+.-.| +..-|.++|.+..+
T Consensus 188 ~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 188 PLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444455555544443 44556666666664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00042 Score=67.10 Aligned_cols=120 Identities=13% Similarity=0.076 Sum_probs=73.2
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
.+...|.+++|+..+..++.. .+-|+..+....+.+.+.++.++|.+.++.+....+. .......+..+|.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 344556666677666666654 2234444455556666667777777777666665433 24455556666666777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
|+.+++........ |+..|..|..+|...|+..++..-..+.
T Consensus 393 ai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77666666665333 6666666666776666666666655554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=4.5e-05 Score=63.73 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
....+...+.+.|++++|...|+.+...++. +...+..+...+...|++++|...+++....++ .+...+..+...+
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~ 95 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP--DDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHH
Confidence 3444444444555555555555554443221 444444455555555555555555555444432 3344444444445
Q ss_pred HccCChHHHHHHHHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~ 259 (638)
...|++++|.+.|+...+
T Consensus 96 ~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 96 LALGEPESALKALDLAIE 113 (135)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 555555555555554444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.8e-05 Score=62.67 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=8.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 006624 519 MSGMVRAGMIDDAYSLLRRME 539 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~ 539 (638)
...+...|++++|...|++..
T Consensus 92 a~~~~~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAI 112 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333333343433333333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=61.48 Aligned_cols=87 Identities=15% Similarity=0.195 Sum_probs=37.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDT--VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
...+...|++++|.+.|+.+....+. ++. .....+...+...|++++|+..++..... ......+....++|.+.
T Consensus 55 A~~~~~~g~~~~A~~~l~~~~~~~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~ 131 (145)
T PF09976_consen 55 AKAAYEQGDYDEAKAALEKALANAPD-PELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQ 131 (145)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHC
Confidence 34444445555555555554443311 111 12223344444455555555555443222 12333444445555555
Q ss_pred CCHHHHHHHHHH
Q 006624 280 GEVEKALGLVQE 291 (638)
Q Consensus 280 g~~~~A~~~~~~ 291 (638)
|++++|...|+.
T Consensus 132 g~~~~A~~~y~~ 143 (145)
T PF09976_consen 132 GDYDEARAAYQK 143 (145)
T ss_pred CCHHHHHHHHHH
Confidence 555555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00012 Score=71.44 Aligned_cols=126 Identities=14% Similarity=0.177 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....++..+...++++.|..+|+++.+.. |+ ....+++.+...++-.+|++++++.++..+ .+..........
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP--QDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Confidence 334555566666777777777777777662 33 333466666667777777777777776554 455666666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 293 (638)
+.+.++++.|+++.+++.+.. +-+..+|..|..+|.+.|++++|+-.++.+.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777652 2234477777777777777777777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.5e-06 Score=49.83 Aligned_cols=33 Identities=45% Similarity=0.713 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577778888888888888888888877777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00037 Score=58.83 Aligned_cols=119 Identities=17% Similarity=0.160 Sum_probs=68.9
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~ 283 (638)
..++...+.+.++.+....+..+ .....-.+...+...|++++|...|+........++ ......|...+...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 36667777777777776553210 012333445666667777777777777776542222 123444566666777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
+|+..++..... ......+....+.+.+.|+.++|...|+..
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777777553322 223445555666677777777777766543
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.01 Score=56.43 Aligned_cols=288 Identities=15% Similarity=0.050 Sum_probs=175.4
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+.+.+..++.+|+..+....+..+. ++.-|..-...+..-|++++|..-.+.-++..+ -........-..+...++.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCHLALSDL 133 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCC--CccccccchhhhhhhhHHH
Confidence 5667777888888888888887544 566677777777888888888887777666443 2222333333444444444
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHH-HHHHHhcCCHHHHHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-ALTVYTYTEL-IKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~~~~~ 325 (638)
.+|.+.++ +...| ....++..++....... +|.-.++..+ ..++...|++++|.+.--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444443 11111 12233333333333222 2333444443 456778899999988877
Q ss_pred HHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCC
Q 006624 326 NMLKEGCKPDIVLINNLIN--VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGV 403 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 403 (638)
..++.... + .+...++ ++.-.++.+.|...|++....+ |+.......-.. ...++.+...
T Consensus 194 ~ilkld~~-n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~-----------~k~le~~k~~-- 255 (486)
T KOG0550|consen 194 DILKLDAT-N--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMM-----------PKKLEVKKER-- 255 (486)
T ss_pred HHHhcccc-h--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhh-----------HHHHHHHHhh--
Confidence 77765322 2 2233333 4455788899999999987754 555443322211 2222334433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHH
Q 006624 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG---FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480 (638)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 480 (638)
.+-..+.|++.+|.+.|.+.+... ..++...|........+.|+.++|+.--+...+.. +.-+..|
T Consensus 256 ----------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikal 324 (486)
T KOG0550|consen 256 ----------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKAL 324 (486)
T ss_pred ----------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHH
Confidence 234678999999999999988653 34556667777778888999999998888877741 1112233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 481 AVMIKHFGKCGRLSDAVDLFNEMKKLR 507 (638)
Q Consensus 481 ~~li~~~~~~g~~~~A~~~~~~m~~~~ 507 (638)
-.-..++...++|++|.+-|+...+..
T Consensus 325 l~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 325 LRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333445566788899998888876653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.016 Score=58.82 Aligned_cols=157 Identities=9% Similarity=0.125 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
|++++|.++|-.+-.+ ...|..+.+.|++-.+.++++.--.......-...|+.+...+.....+++|.+.
T Consensus 748 g~feeaek~yld~drr---------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRR---------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchh---------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665544 1234455556666555555443211100001124566666666666666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006624 254 FDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK 333 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 333 (638)
+..-.. ....+.++.+..++++-+.+.+.+.+ +....-.+.+.+.+.|.-++|.+.|-+-- .
T Consensus 819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~- 880 (1189)
T KOG2041|consen 819 YSYCGD---------TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRS---L- 880 (1189)
T ss_pred HHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhcc---C-
Confidence 644221 12245555555555554444443332 45556667777777777777777664321 1
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 334 PDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 334 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
| ...+..|...+++.+|.++-+..
T Consensus 881 p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 881 P-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 22345566667777777776654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00024 Score=69.55 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=84.0
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
...|+..+...++++.|+++|+++.+.. |+ ....++..+...++-.+|.+++++..+..+. +...+......+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3445555566677777777777777653 33 3344666666677777777777777765433 56666666677777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 314 AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.++++.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 78888888888777775332 45577778888888888888887777664
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=48.31 Aligned_cols=33 Identities=42% Similarity=0.828 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD 546 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 546 (638)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.6e-05 Score=47.62 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 583 VSYNTILGCLSRAGMFEEAARLMKDMNAKGFEY 615 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 615 (638)
.+|+.++++|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 366777777777777777777777777766665
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00053 Score=55.65 Aligned_cols=97 Identities=13% Similarity=0.074 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALIS 239 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 239 (638)
+...+..+.+.|++++|...|.++...... .....+..+..++.+.|++++|...|+.+....+..+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 333444444444444444444444433111 0122333344444444444444444444443322111 1223334444
Q ss_pred HHHccCChHHHHHHHHHHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~ 259 (638)
.+.+.|+.++|.+.++++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 44444444444444444444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0006 Score=55.35 Aligned_cols=101 Identities=10% Similarity=0.033 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSM 201 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l 201 (638)
.++...+..+.+.|++++|.+.+..+..... +.....+..+..++.+.|++++|...|+.+....+. ....++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4667788889999999999999999987532 122457778999999999999999999999876332 235678888
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
..++.+.|++++|...++++....+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCc
Confidence 8999999999999999999999765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=3e-05 Score=46.43 Aligned_cols=31 Identities=42% Similarity=0.612 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCV 544 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 544 (638)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00038 Score=68.45 Aligned_cols=124 Identities=12% Similarity=0.218 Sum_probs=93.8
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhh
Q 006624 437 GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY--CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYT 514 (638)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 514 (638)
+.+.+......+++.+....+++.+..++.+.... ....-..+..++++.|.+.|..++++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34667777788888888888888888888877764 2222233445888888888888888888888888888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS 560 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 560 (638)
+|.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888888776666777766666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00035 Score=53.81 Aligned_cols=88 Identities=26% Similarity=0.357 Sum_probs=33.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...+...|++++|...++++.+..+ .+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|+
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3333444444444444444443322 222333333333444444444444444433322 1122333334444444444
Q ss_pred HHHHHHHHHHH
Q 006624 282 VEKALGLVQEM 292 (638)
Q Consensus 282 ~~~A~~~~~~m 292 (638)
+++|...+...
T Consensus 84 ~~~a~~~~~~~ 94 (100)
T cd00189 84 YEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHH
Confidence 44444444333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.014 Score=53.95 Aligned_cols=184 Identities=11% Similarity=0.064 Sum_probs=111.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH---HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY---NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
++.........+.+.|++++|.+.|+++....+.+ .... -.++.++.+.+++++|...|++..+..|..|+. .|.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~-~~a 108 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI-DYV 108 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch-HHH
Confidence 44444455566677888888888888888764432 2322 346677888889999999999988887765554 233
Q ss_pred HHHHHHHc--cC---------------C---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 236 ALISAFGK--LG---------------R---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 236 ~l~~~~~~--~g---------------~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..+.+.+. .+ + ..+|++.|+.+++. -|+ ..-..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH
Confidence 33333221 11 1 13444555555554 133 22334454444443321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 296 GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 296 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
-...--.+.+.|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.+....+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1111124456688888888888888888875 333345566777888888888888887776553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.001 Score=60.49 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=71.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
+-+.+.++|++|+..|.+.++..+. |++-|..-..+|++.|+++.|++-.+..+..++ --..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcH
Confidence 5566777888888888888777443 666677777788888888888888877777664 4566777788888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYT 270 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~ 270 (638)
.+|++.|++.++. .|+-.+|-
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHH
Confidence 8888877777763 56655543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0082 Score=50.45 Aligned_cols=127 Identities=14% Similarity=0.078 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC-CCCHHHHHH
Q 006624 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGL-QPTAKIYTT 271 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~ 271 (638)
|++.--..|..++.+.|++.+|...|++... |+...|....-.+..+....+++..|...++.+.+... ..++...-.
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 3444444455555555555555555555554 33334455555555555555555555555555554320 001222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
+...+...|.+++|..-|+.....- |+...-......+.++|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHH
Confidence 4455555555555555555555442 222222222334445555444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00076 Score=55.81 Aligned_cols=97 Identities=9% Similarity=-0.033 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.....+...+...|++++|.++|+-+....+. +..-|..|..++-..|++++|++.|.......+ .|...+-.+...
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~--ddp~~~~~ag~c 112 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI--DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCchHHHHHHHH
Confidence 34455556666777777777777777666443 556666677777777777777777777776664 566667777777
Q ss_pred HHccCChHHHHHHHHHHHHC
Q 006624 241 FGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777766653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00044 Score=53.24 Aligned_cols=92 Identities=21% Similarity=0.253 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+...|++++|...|+++.+.... +...+..+...+...|++++|.+.|+......+ .+...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDP--DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cchhHHHHHHHHHHHH
Confidence 3444444555555555555555443211 234444555555555555555555555555443 2334455555555555
Q ss_pred CChHHHHHHHHHHHH
Q 006624 245 GRDISAIRLFDEMKE 259 (638)
Q Consensus 245 g~~~~A~~~~~~m~~ 259 (638)
|+.++|...++...+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00041 Score=68.19 Aligned_cols=124 Identities=19% Similarity=0.168 Sum_probs=79.2
Q ss_pred CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006624 472 CGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINS 549 (638)
Q Consensus 472 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 549 (638)
+.+.+......+++......+.+++..++.+.... ....-..|..+++..|.+.|..++++++++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34455556666666666666677777777766654 1111233445677777777777777777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 006624 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA 595 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 595 (638)
+|.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777766655555555655555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.014 Score=53.95 Aligned_cols=184 Identities=10% Similarity=0.011 Sum_probs=119.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSV---LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
+...+-.....+.+.|++++|...|+++.... +-++.. ...++.++.+.+++++|...|++..+..+......|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44455566777788999999999999998853 222333 35577888999999999999999988755433344444
Q ss_pred HHHHHHh--cC---------------C---HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 MILMLMQ--EG---------------Y---YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...+++. .+ + ..+|++.|+++++.. |+.. -..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S~-------------ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNSQ-------------YTTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCCh-------------hHHHHHHHHHHHHHH
Confidence 4444431 11 1 245667777777765 3332 233444433333321
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK--GCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
=...-..+...|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|......+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111225667788888888888888888875 223345566677888888888888887766543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.4e-05 Score=56.89 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=9.1
Q ss_pred HHHHHHhcCCHhHHHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNE 220 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~ 220 (638)
+..+|.+.|++++|++++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHH
Confidence 44444444444444444444
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0019 Score=56.34 Aligned_cols=88 Identities=17% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
..+..+...+...|++++|...|++.....+..++ ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 34555555566666666666666666554322121 2345555555555566666655555555532 123444444444
Q ss_pred HHHhcCCHHH
Q 006624 275 IYFKLGEVEK 284 (638)
Q Consensus 275 ~~~~~g~~~~ 284 (638)
.+...|+...
T Consensus 115 ~~~~~g~~~~ 124 (172)
T PRK02603 115 IYHKRGEKAE 124 (172)
T ss_pred HHHHcCChHh
Confidence 5555444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.012 Score=55.93 Aligned_cols=273 Identities=14% Similarity=0.013 Sum_probs=128.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006624 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 354 (638)
.+.+..++.+|+..+...++..+. ++..|..-...+...|++++|.--.+.-++.... ........-.++...++..+
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence 455666777777777777776554 4556666666666677777766555544442111 11122333333444444444
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHH
Q 006624 355 ALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLPSPFTYSIL-IDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~ 432 (638)
|.+.++.-. .+ . ...+ ...++.... ..-+|...+|..+ ..++...|++++|.+.--.
T Consensus 136 A~~~~~~~~---------~~-~----------~ana-l~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 136 AEEKLKSKQ---------AY-K----------AANA-LPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHhhhhh---------hh-H----------Hhhh-hhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 444444110 00 0 0000 000011111 1112333333332 2344555666666665555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHH-------------HHHHHHHHHHhcCCHHHHHHH
Q 006624 433 MEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSAR-------------VYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 433 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------------~~~~li~~~~~~g~~~~A~~~ 499 (638)
..+.+ +.+......-..++...++.+.|...|++.+..+ |+.. .+..-.+-..+.|++.+|.+.
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 55443 3333333322333444556666666666655532 1111 111122233456666667666
Q ss_pred HHHHHhC---CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 500 FNEMKKL---RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 500 ~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
+.+.+.. +.+|+...|.....+..+.|+.++|+.-.++..+. .|. ...|..-..++...+++++|.+-+++..+
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666543 22333444555555556666777766666666553 111 11222223334445566666666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0008 Score=51.44 Aligned_cols=76 Identities=14% Similarity=0.279 Sum_probs=42.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHhhHHHHH
Q 006624 554 LNGLAKSGGPKRAMEIFTKMQHSEI-KPDAVSYNTILGCLSRAG--------MFEEAARLMKDMNAKGFEYDQITYSSIL 624 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 624 (638)
|..+...|++...-.+|+.+++.|+ .|+..+|+.++.+..+.. +.-+.+.+++.|...+++|+..||+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555444322 2334555666666666677777777666
Q ss_pred HHHhc
Q 006624 625 EAVGK 629 (638)
Q Consensus 625 ~~~~~ 629 (638)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66644
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=4.5e-05 Score=44.50 Aligned_cols=29 Identities=31% Similarity=0.720 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56677777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00068 Score=51.82 Aligned_cols=76 Identities=22% Similarity=0.369 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccC--------CHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGC-KPDIVLINNLINVLGRAG--------RLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
.|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444445666666666666666665 556666666655554432 223445555566555666666666666
Q ss_pred HHHHH
Q 006624 378 IKSLF 382 (638)
Q Consensus 378 l~~~~ 382 (638)
+..++
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0026 Score=55.53 Aligned_cols=91 Identities=11% Similarity=0.052 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM--GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
....|..+...+...|++++|...+++.++....+ ....+..+...+.+.|++++|...+.+..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 44567777777888888888888888877643222 1356777777788888888888888877765332 45666667
Q ss_pred HHHHHhcCCHhHHH
Q 006624 202 ILMLMQEGYYEKIH 215 (638)
Q Consensus 202 ~~~~~~~g~~~~A~ 215 (638)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777776654433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0012 Score=64.92 Aligned_cols=87 Identities=13% Similarity=-0.002 Sum_probs=41.5
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
+...|++++|+..|.++.+..+. +...|..+..+|.+.|++++|+..+++++...+ .+...|..+..++...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCCHHH
Confidence 33444555555555544444322 344444444455555555555555555544433 334444444455555555555
Q ss_pred HHHHHHHHHH
Q 006624 250 AIRLFDEMKE 259 (638)
Q Consensus 250 A~~~~~~m~~ 259 (638)
|+..|++..+
T Consensus 89 A~~~~~~al~ 98 (356)
T PLN03088 89 AKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0013 Score=64.71 Aligned_cols=91 Identities=7% Similarity=-0.087 Sum_probs=43.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHh
Q 006624 133 RCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 212 (638)
..+...|++++|+..|.++++.. +.+...+..+..+|.+.|++++|+..++++...... +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 33444455555555555554432 333444444455555555555555555555444222 3444444555555555555
Q ss_pred HHHHHHHHHHhCC
Q 006624 213 KIHELYNEMCNEG 225 (638)
Q Consensus 213 ~A~~~~~~~~~~~ 225 (638)
+|+..|++.+...
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 5555555554443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.65 E-value=9.8e-05 Score=55.47 Aligned_cols=80 Identities=19% Similarity=0.306 Sum_probs=48.0
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 006624 525 AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYNTILGCLSRAGMFEEAA 602 (638)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 602 (638)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .. ..| +......+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777765321 1344444567777777777777777776 22 122 2233445567777777777777
Q ss_pred HHHHH
Q 006624 603 RLMKD 607 (638)
Q Consensus 603 ~~~~~ 607 (638)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77765
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0015 Score=56.77 Aligned_cols=95 Identities=14% Similarity=0.002 Sum_probs=59.4
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 006624 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP--DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 589 (638)
...|..+...+...|++++|...|++.......+ ...++..+...+...|++++|...+++..... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4455666666667777777777777776543222 13467777777777888888888887777532 11234455555
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 006624 590 GCLS-------RAGMFEEAARLMKD 607 (638)
Q Consensus 590 ~~~~-------~~g~~~~A~~~~~~ 607 (638)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 77777755555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0031 Score=57.43 Aligned_cols=103 Identities=17% Similarity=0.124 Sum_probs=84.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006624 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLED 354 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 354 (638)
-+.+.+++++|+..|.+.++..+. |.+.|..-..+|++.|.++.|++-.+..+..... -..+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 356788999999999999988766 8888888889999999999999988888876433 45688889999999999999
Q ss_pred HHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 006624 355 ALKLFNKMEALQCKPNVVTYNTVIKSL 381 (638)
Q Consensus 355 A~~~~~~~~~~~~~p~~~~~~~ll~~~ 381 (638)
|.+.|++..+ +.|+..+|..-+...
T Consensus 168 A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 9999998877 558888776666543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=57.67 Aligned_cols=79 Identities=11% Similarity=0.029 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
.+..+...+...|++++|+..|.+.......+ ...+|..+...+...|++++|++.+++.....+ ....++..+..
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~--~~~~~~~~la~ 114 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP--FLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CcHHHHHHHHH
Confidence 34444555555556666666655554432211 123555555666666666666666666555432 22333444444
Q ss_pred HHH
Q 006624 240 AFG 242 (638)
Q Consensus 240 ~~~ 242 (638)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.025 Score=53.95 Aligned_cols=94 Identities=10% Similarity=0.040 Sum_probs=46.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC--HHH
Q 006624 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-----DIN-SHNIILNGLAKSGGPKRAMEIFTKMQHS--EIKPD--AVS 584 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-----~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~~ 584 (638)
+..+...+.+.|++++|.++|++....-... +.. .|-..+-++...||+..|.+.+++.... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 4455556667777777777777766542211 111 1222333445567777777777776642 22222 234
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHHH
Q 006624 585 YNTILGCLSR--AGMFEEAARLMKDM 608 (638)
Q Consensus 585 ~~~l~~~~~~--~g~~~~A~~~~~~m 608 (638)
...|+.+|-. ...+++|..-|+.+
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 4455555532 22344444444444
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=62.53 Aligned_cols=132 Identities=12% Similarity=0.058 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK-AKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
.+|..+++..-+.+..+.|..+|.++.+. ...+..+|...+..-.+ .++.+.|.++|+...+. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 35666666666666677777777776643 23344555555555333 44555577777766654 33356666666666
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...|+.+.|..+|++....-+... -...|..++..=.+.|+.+.+.++.+++.+
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6667777777777777665421101 113566666666666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=53.92 Aligned_cols=97 Identities=8% Similarity=-0.094 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006624 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 345 (638)
......+...+...|++++|.++|+.+...++. +...|..|.-++-..|++++|+..|.......+. |...+-.+..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c 112 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 334455566666777777777777777766554 6666666777777777777777777777776543 66666777777
Q ss_pred HHccCCHHHHHHHHHHHHH
Q 006624 346 LGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~ 364 (638)
+...|+.+.|.+.|+....
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=9.5e-05 Score=43.07 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=11.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 515 YNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 515 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0024 Score=60.56 Aligned_cols=131 Identities=12% Similarity=0.080 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK-AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.. .++.+.|.++|+...+. .+.+...|..-++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777888888888887543 3344555555555333 45666688888888776 56677777777888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 487 FGKCGRLSDAVDLFNEMKKLRCKPDV---YTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 487 ~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
+.+.++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888887765 22222 46777777777888888888888877764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.14 Score=52.36 Aligned_cols=176 Identities=15% Similarity=0.125 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP--------TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
.|.++.|..+.......-.++.|...|-+.... |++. +...-.+=+.+ --|++++|.++|-+|-+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 677788888887777777777777777666543 2210 00011111122 2367777777776664422
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006624 228 FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 228 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
..+....+.|++-...++++. .|-.. -...|+.+.+.+.....+++|.+.|..-..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------- 824 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------- 824 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence 234445556666555554432 11111 134667777777777777777777654321
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
....+.++.+..++++-..+-+.+ +-|....-.+..++.+.|.-++|.+.|-+
T Consensus 825 ~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 825 TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 122445555555555544433332 22445556666777777777766665543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0058 Score=62.94 Aligned_cols=144 Identities=13% Similarity=0.096 Sum_probs=75.9
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006624 402 GVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 402 ~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+.|...|...+.+.... ++.++|..+|++..+.. |.+...+..+..++.....+. +.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~---------------~~ 395 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQ---------------PL 395 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcC---------------Cc
Confidence 3456677777777664332 23667888888888775 555555555443332211000 00
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 555 (638)
...++..+.+...+.... ....+...|..+.......|++++|...++++++.. |+...|..+..
T Consensus 396 ------------~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~ 461 (517)
T PRK10153 396 ------------DEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGK 461 (517)
T ss_pred ------------cHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence 001122333333332221 112233455555444555666666666666666643 56666666666
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 006624 556 GLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+...|+.++|.+.+++...
T Consensus 462 ~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 66666676666666666664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.099 Score=50.58 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLR-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSH-NIIL 554 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 554 (638)
..+|...++.-.+..-++.|..+|-+..+.+ +.+++..+++++..++ .|+...|..+|+--... .||...| +-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4467777777778888999999999999988 6788889999887654 68888999999876654 3454443 4566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 006624 555 NGLAKSGGPKRAMEIFTKMQHSEIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
.-+...++-+.|..+|+..+.. +..+ ..+|..+|.--..-|+...+..+=++|.+ +.|...+.....+-++...+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik~d 550 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIKAD 550 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhhcc
Confidence 6778889999999999976542 1222 46899999988999999999998888874 35666555555555544333
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.008 Score=48.02 Aligned_cols=58 Identities=12% Similarity=0.113 Sum_probs=28.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|+.++++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444445555555555555555443322 223334444555555555555555555443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.039 Score=49.30 Aligned_cols=179 Identities=12% Similarity=0.070 Sum_probs=107.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
....|+..+..+-+..+.. ....+++.+-.....+..++.+++=.. ...++++..+.-.|.+.-.
T Consensus 132 ~~~lgnpqesLdRl~~L~~--------~V~~ii~~~e~~~~~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 132 QQYLGNPQESLDRLHKLKT--------VVSKILANLEQGLAEESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred HHhcCCcHHHHHHHHHHHH--------HHHHHHHHHHhccchhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhh
Confidence 3445555555444443322 122333444444444555555554332 3456677777778888888
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-----AKIYTTLVSIYFKLGEVEKALGLV 289 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~-----~~~~~~li~~~~~~g~~~~A~~~~ 289 (638)
..++.+.++.++. .++.....|++.-.+.||.+.|...|++..+..-..| ..+.......|.-.+++..|...+
T Consensus 197 ~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 8888888886654 6777788888888888888888888887765322222 223333334555566677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 290 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.++...+.. |+..-|.-.-++.-.|+..+|++..+.|+..
T Consensus 276 ~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 276 TEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 666665443 4444444444444566677777777777665
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.012 Score=55.97 Aligned_cols=126 Identities=16% Similarity=0.257 Sum_probs=68.1
Q ss_pred HHHHHHcc-CChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-H
Q 006624 237 LISAFGKL-GRDISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-----LTVY-T 303 (638)
Q Consensus 237 l~~~~~~~-g~~~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~~~~-~ 303 (638)
+...|-.. |++++|++.|++..+. | .+ -..++..++..+.+.|++++|.++|++....... .+.. .
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 34445555 6777777777766542 2 11 1335566777788888888888888877654221 1121 2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHcc--CCHHHHHHHHHHHH
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEG--CKPD--IVLINNLINVLGRA--GRLEDALKLFNKME 363 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~ 363 (638)
|...+-++...||...|...+++..... +..+ ......|+.++-.. ..+..++.-|+.+.
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 2233445566788888888888776542 2212 23445555555432 33555555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0005 Score=48.59 Aligned_cols=58 Identities=16% Similarity=0.213 Sum_probs=35.5
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+.+.|++++|...|+++.+..+. +...+..+..++.+.|++++|...|+++++..
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 44556666666666666666665432 55666666666666666666666666666544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.012 Score=60.71 Aligned_cols=138 Identities=13% Similarity=0.035 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHh--cC---CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC--------ChHHHHHHHHH
Q 006624 190 KCKPTANTYNSMILMLMQ--EG---YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG--------RDISAIRLFDE 256 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~ 256 (638)
..+.+..+|...+++... .+ ..++|.++|++..+..+ .....|..+..++.... +...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP--~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP--DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345577777777766543 22 26678888888887664 33444444433332211 12223333333
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 257 MKEN-GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 257 m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.... ....+...|..+.-.....|++++|...+++....+ |+...|..+...+...|+.++|.+.+++..+..
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2221 122344556655555555666777777776666654 356666666666666677777766666666543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0036 Score=59.19 Aligned_cols=97 Identities=16% Similarity=-0.046 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCcH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEME----EKGF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEY-----CGCSSA 477 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 477 (638)
..++.+.+++.-.|+++.|.+.|+... +.|- ........+|...|.-..++++|+..+.+-... ...-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 346667788888888888888887643 2221 223345666777787778888888877664431 111235
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 478 RVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
..|.+|..+|...|..++|+.+.+.-.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 677788888888888888887776543
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.014 Score=52.51 Aligned_cols=173 Identities=15% Similarity=0.148 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..+......+...|++++|...|+.+....+. -...+...++.++.+.|++++|...|+++++..|..|.. .+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~-~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA-DYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH-HHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch-hhHHHH
Confidence 33444555667777888888888887765221 234455667777888888888888888887766543332 222222
Q ss_pred HHHHcc-------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 239 SAFGKL-------------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305 (638)
Q Consensus 239 ~~~~~~-------------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~ 305 (638)
.+.+.. +...+|...|+.++ .-|=......+|...+..+... =...--
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~ 145 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHEL 145 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHH
Confidence 222211 11123333333333 3333344445555444444321 011112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHccCCHHHH
Q 006624 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI----VLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 306 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 355 (638)
.+.+.|.+.|.+..|..-++.+++. -|++ .....++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 2456677777777777777777765 2222 2445566666666666533
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.066 Score=45.26 Aligned_cols=132 Identities=11% Similarity=0.016 Sum_probs=85.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-CCCHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-KPTANTYNSM 201 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l 201 (638)
|+...-..+..++.+.|++.+|...|++...--...|+...-.+.++....+++..|...++.+-+..+ ..++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 344455567777777788888888887777655566777777777777777777777777777766531 1134445566
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
.+.|...|++.+|...|+...... |+..........+.+.|+.+++..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 677777777777777777777754 44444444444556666666555444333
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.16 Score=49.32 Aligned_cols=453 Identities=14% Similarity=0.141 Sum_probs=235.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--H
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM--L 205 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~ 205 (638)
.+.++++++++.++|.+..... ..++ ...+.++++|... +.+........+.+. .| ...|-.+..+ .
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHH
Confidence 4567888888888888876642 2222 2345677777653 455555555555544 22 2234444433 3
Q ss_pred HhcCCHhHHHHHHHHHHhC--CCCCC-----------CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC----CCCCHHH
Q 006624 206 MQEGYYEKIHELYNEMCNE--GNCFP-----------DTVTYSALISAFGKLGRDISAIRLFDEMKENG----LQPTAKI 268 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~--~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~ 268 (638)
.+.+++++|++.+...... +...| |-..-+..++.+...|++.++..+++++..+= ..-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 5788899988888776554 21111 11223556778889999999999888887543 3468888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGK---GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 345 (638)
|+.++-.+.+. .|-++++. ++-| ..|. ++-.|.+.=+ .++.-.=..+.|....+..++..
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~p--dyYe-milfY~kki~------~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYP--DYYE-MILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccCh--HHHH-HHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHH
Confidence 88877666543 33333221 2222 2232 2223322111 11110001123333333333333
Q ss_pred HHcc--CCHHHHHHHHHHHHHCCCCCCHhHH-HHHHHHHHhcCChHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHH
Q 006624 346 LGRA--GRLEDALKLFNKMEALQCKPNVVTY-NTVIKSLFESKAPASEASAWFEKMKANGVL----PSPFTYSILIDGFC 418 (638)
Q Consensus 346 ~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~ 418 (638)
..-. ....--+++++.....-+.|+.... ..+...+.. +..++ ..+.+.+....+. .=..+|..++....
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~-~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~V 309 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQV-GHFCEAIASSKIEKLKEELIDRFGNLLSFKV 309 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3222 1122223333333333344543322 222222222 22222 2222222221111 12346778888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhh-------HHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHH--
Q 006624 419 KTNRVEKAHLLLEEMEEKGFPPCPAA-------YCSLINGYGKA----KRYEAANELFLELKEYCGCSSARVYAVMIK-- 485 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~~~~~~~~~~-------~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~-- 485 (638)
+.++...|.+.+.-+.... |+... -..+.+..|.. .+...=..+++.+....+ ........|+.
T Consensus 310 k~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di-DrqQLvh~L~~~A 386 (549)
T PF07079_consen 310 KQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI-DRQQLVHYLVFGA 386 (549)
T ss_pred HHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc-cHHHHHHHHHHHH
Confidence 9999999988888776543 22221 11222333311 122333344444443311 11111222222
Q ss_pred -HHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHH----HHHHH---cCCHHHHHHHHHHHHHCCCCCC----HHHHHH
Q 006624 486 -HFGKCGR-LSDAVDLFNEMKKLRCKPDVYTYNALM----SGMVR---AGMIDDAYSLLRRMEEDGCVPD----INSHNI 552 (638)
Q Consensus 486 -~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~p~----~~~~~~ 552 (638)
-+=+.|. -++|+.+++...+.. +-|...-|.+. .+|.+ ...+..-..+-+-..+.|++|- ...-|.
T Consensus 387 k~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 387 KHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 2223444 788899998887742 23443333322 22322 2233333444444446677764 334455
Q ss_pred HHHH--HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 553 ILNG--LAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSS 622 (638)
Q Consensus 553 l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 622 (638)
|.++ +...|++.++.-+-.=+. .+.|++.+|..+.-++....++++|..++..+ +|+..++++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 5444 467899998877666555 46789999999999999999999999998865 667666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0061 Score=57.74 Aligned_cols=133 Identities=12% Similarity=-0.017 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCcH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEME----EKGF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEY----CG-CSSA 477 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~ 477 (638)
..|..|.+.|.-.|+++.|+...+.-. +-|- .....++..+..++.-.|+++.|.+.|...... |. ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 356677777888899999988766532 2221 123457888999999999999999998875432 21 2335
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 478 RVYAVMIKHFGKCGRLSDAVDLFNEMKKL----R-CKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
.+.-+|.+.|.-..++++|+.++.+-... + ..-....+-+|..++...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677888888889999999988764321 1 112345677899999999999999988776654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.003 Score=54.95 Aligned_cols=88 Identities=19% Similarity=0.354 Sum_probs=57.7
Q ss_pred CCCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHH
Q 006624 509 KPDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS----------------GGPKRAM 567 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------------g~~~~A~ 567 (638)
..+..+|..+++.+.+. |..+=....++.|.+-|+.-|..+|+.|++.+=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45777888888777643 55666677777888888888888888888775431 1234456
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
+++++|...|+.||..++..+++.+++.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 66666666666666666666666664443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00076 Score=48.18 Aligned_cols=51 Identities=12% Similarity=0.243 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
.|++++|++.|+++....+. +...+..++.+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44444444444444443222 4444444444444444444444444444443
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.11 Score=46.55 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=104.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-----H
Q 006624 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTE-----L 307 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~-----l 307 (638)
..+.++..+...|.+.-....+.+.++...+.++.....|.+.-.+.|+.+.|...|+...+..-..|..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34667777778888888889999998877677888888999999999999999999987765433333333333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006624 308 IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 308 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
...+..++++.+|...+.+....+.. |+...|.=.-+..-.|+..+|.+.++.|.... |...+-++++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~es~~ 326 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHESVL 326 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC--CccchhhhHH
Confidence 44566788899999999888877544 56666655555556788999999999998744 5555444433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0039 Score=54.23 Aligned_cols=104 Identities=22% Similarity=0.323 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHc-----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006624 229 PDTVTYSALISAFGK-----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
.|-.+|..++..+.+ .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 566666666666653 46677777778888888888888888888877654 2221 1111111111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
-| -.+.+-|++++++|...|+.||..++..+++.+.+.+.
T Consensus 114 ------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 12345577788888888888888888888888766554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.017 Score=46.11 Aligned_cols=109 Identities=13% Similarity=0.026 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHH
Q 006624 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMG--PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILM 204 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~ 204 (638)
.....++-..|+.++|+.+|++.+..|.... ...+..+...+...|++++|..++++.....+. .+......+..+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence 3456778889999999999999998775544 456778888999999999999999998775222 122223334457
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+...|+.++|++.+-.... ++...|..-|..|.
T Consensus 85 L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 7888999999999887766 34445555555554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0011 Score=47.39 Aligned_cols=59 Identities=24% Similarity=0.329 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG-RDISAIRLFDEM 257 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m 257 (638)
+|..+...+.+.|++++|+..|++.++..+ .+...|..+..++.+.| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 334444444444444444444444444332 23333444444444444 344444444433
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.016 Score=53.21 Aligned_cols=99 Identities=17% Similarity=0.156 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG---EVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 230 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
|...|..|..+|...|+++.|..-|.+..+.. .+|...+..+..++.... ...++.++|+++...++. |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44444444444444444444444444444331 223333333333332211 123444444444443332 3334444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444444444444444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=47.32 Aligned_cols=53 Identities=17% Similarity=0.263 Sum_probs=32.0
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+.|++++|++.|+++....+ .+...+..+...+.+.|++++|.++++.+...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666666666666666554 35555556666666666666666666666654
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0096 Score=54.69 Aligned_cols=101 Identities=10% Similarity=-0.047 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---CHhHHHHHHHHHHhCCCCCCCHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG---YYEKIHELYNEMCNEGNCFPDTVT 233 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 233 (638)
+-|...|..+...|...|+++.|..-|.+..+... +++..+..+..++..+. .-.++.++|++++...+ .|+.+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~--~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP--ANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC--ccHHH
Confidence 44555555555555555555555555555554422 24455555554444322 13455555555555543 45555
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555556666666666665554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.002 Score=46.12 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhC
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNE 224 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 224 (638)
++.+|..+...+...|++++|+..|.+..+..+. +...|..+..++.+.| ++++|++.+++.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3456666777777777777777777777666433 5666777777777777 577777777776654
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.07 Score=47.91 Aligned_cols=177 Identities=12% Similarity=0.046 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+-.....+...|++.+|+..|+.+.... .+..+.....++.++.+.|+++.|...|++..+.-+......+-..+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 3444556677888999999999999998752 12334667788899999999999999999988764332222233333
Q ss_pred HHHH--hc-----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006624 203 LMLM--QE-----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 203 ~~~~--~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
.+.+ .. +...+|+..|+.++...| ......+|...+..+.+. =...-
T Consensus 85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP----------------~S~y~~~A~~~l~~l~~~----la~~e 144 (203)
T PF13525_consen 85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYP----------------NSEYAEEAKKRLAELRNR----LAEHE 144 (203)
T ss_dssp HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-T----------------TSTTHHHHHHHHHHHHHH----HHHHH
T ss_pred HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCc----------------CchHHHHHHHHHHHHHHH----HHHHH
Confidence 3322 11 223456666666666543 333344555544444331 11112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCAL--TVYTYTELIKGLGRAGRVEDAY 321 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 321 (638)
-.+...|.+.|.+..|..-++.+++.=+.. .......++.+|.+.|..+.|.
T Consensus 145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 336677888888888888888887762221 1234456677777777776443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.002 Score=45.46 Aligned_cols=58 Identities=16% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...+.+.|++++|.+.|+++++..+ -+...+..+...+...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44566777777777777777777664 45666777777777777777777777777654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.017 Score=53.77 Aligned_cols=98 Identities=8% Similarity=0.087 Sum_probs=51.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALIS 239 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~ 239 (638)
|...+..+.+.|++++|...|+.+.+..+... ..++..+...|...|++++|...|+.+.+..+..| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333334445666666666666655422211 24555566666666666666666666665432111 1233334445
Q ss_pred HHHccCChHHHHHHHHHHHHC
Q 006624 240 AFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+...|+.++|.++|+.+++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555566666666666666654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.017 Score=53.77 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP-DTVTYSALISAFGKLGRDISAIRLFDEMKENGL--QPTAKIYTTLV 273 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li 273 (638)
.|......+.+.|++++|+..|+.+++..+..+ ....+..+...|...|++++|...|+.+.+.-. +.....+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444556777777777777776553211 024556666777777777777777777765410 11234455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
..+...|+.++|.++|+.+.+.-
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 66667777777777777776653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.25 Score=50.16 Aligned_cols=88 Identities=18% Similarity=0.285 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh---------
Q 006624 443 AAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY--------- 513 (638)
Q Consensus 443 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------- 513 (638)
.+...+...+.+...+.-|.++|..+-.. ..+++.....++|.+|..+-++..+. .||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444444555555555555555331 23445555566666666665554442 23321
Q ss_pred --hHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 514 --TYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 514 --~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
-+.-.-.+|.++|+-.+|.++++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 1222234566677777777777776653
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.45 Score=45.45 Aligned_cols=216 Identities=14% Similarity=0.050 Sum_probs=120.2
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhCCCHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCL--DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNIL--GKAKMVNK 178 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~ 178 (638)
..+..+.+.|+-..+.+| |..|-..+ .-.|+-..|.++-.+..+. ...|...+..++.+- .-.|+++.
T Consensus 67 ~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~ 138 (531)
T COG3898 67 ESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYED 138 (531)
T ss_pred hCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHH
Confidence 446777777876666554 33443333 3467777887777665432 344444455554443 34688888
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHH----HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006624 179 ALSIFYQIKSRKCKPTANTYNSMILM----LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
|.+-|+.|.. ++.+-..=+++ --+.|..+.|..+-+..-..-+ .-...+...+...|..|+++.|++++
T Consensus 139 Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 139 ARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred HHHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcCChHHHHHHH
Confidence 8888888876 33333222222 2356788888888777766554 34566777888888888888888888
Q ss_pred HHHHHCC-CCCCHHHH--HHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 255 DEMKENG-LQPTAKIY--TTLVSIY---FKLGEVEKALGLVQEMKGKGCALTVY-TYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 255 ~~m~~~g-~~~~~~~~--~~li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
+.-.+.. +.++..-- ..|+.+- .-.-+...|.+.-.+..+. .||.. .-..-...+.+.|+..++-.+++.+
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~a 289 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETA 289 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHH
Confidence 7665432 23332211 1111110 0112334444444333332 22221 1122345566666666666666666
Q ss_pred HHcCCCCC
Q 006624 328 LKEGCKPD 335 (638)
Q Consensus 328 ~~~~~~p~ 335 (638)
-+..+.|+
T Consensus 290 WK~ePHP~ 297 (531)
T COG3898 290 WKAEPHPD 297 (531)
T ss_pred HhcCCChH
Confidence 66655544
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0059 Score=44.24 Aligned_cols=56 Identities=16% Similarity=0.101 Sum_probs=28.7
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|.+.+++++|.++++.+...++. ++..|......+.+.|++++|.+.|+...+..
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 344555555555555555554332 44445555555555555555555555555544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.52 Score=45.34 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=58.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 006624 444 AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMV 523 (638)
Q Consensus 444 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 523 (638)
+.+..+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++-..+... +.++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 33444455555666666555544432 25566666666666666666655544321 123355666666666
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 524 RAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTK 572 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 572 (638)
+.|...+|..+..++ + + ..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655551 1 1 2344556666666666555443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.11 Score=43.58 Aligned_cols=94 Identities=10% Similarity=-0.016 Sum_probs=70.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
....--+...|++++|..+|.-+.-.++. +..-|..|...+-..+++++|+..|......+. .|...+......+..
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~ 117 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHH
Confidence 34445566788888888888888776544 566677777777788888888888888766554 455556667778888
Q ss_pred cCChHHHHHHHHHHHHC
Q 006624 244 LGRDISAIRLFDEMKEN 260 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~ 260 (638)
.|+.+.|...|+...++
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 88888888888888773
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.4 Score=43.38 Aligned_cols=181 Identities=13% Similarity=0.107 Sum_probs=103.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
+..-+..-.+.|++++|.+.|+.+....+ +-...+.-.++-++.+.+++++|+..+++.....+.+||. .|..-|.+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~Ylkg 115 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKG 115 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHH
Confidence 33344445677889999999988876622 2234556667778888999999999999998888765554 34444444
Q ss_pred HHcc-------CChH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006624 241 FGKL-------GRDI---SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG 310 (638)
Q Consensus 241 ~~~~-------g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 310 (638)
++.. .|.. +|..-|++++.+ -||. .-...|......+... =...=..+.+.
T Consensus 116 Ls~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~----LA~~Em~Iary 176 (254)
T COG4105 116 LSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA----LAGHEMAIARY 176 (254)
T ss_pred HHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4422 1222 233333333333 1221 1112222222222110 00011234567
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 311 LGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
|.+.|.+..|..-+++|++. .+- ....+-.+..+|...|-.++|.+.-+-+..
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 78888888888888888876 221 223455566777778887777776666554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.4 Score=46.65 Aligned_cols=94 Identities=14% Similarity=0.127 Sum_probs=64.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGK---AKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.++-.|....+|+.++++++.+.... ...++.+-...+-++-+ .|+.++|++++..+......+++++|..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44456888999999999999987641 12234444455556666 8899999999998666656778888888887
Q ss_pred HHHhc---------CCHhHHHHHHHHHHh
Q 006624 204 MLMQE---------GYYEKIHELYNEMCN 223 (638)
Q Consensus 204 ~~~~~---------g~~~~A~~~~~~~~~ 223 (638)
.|-.. ...++|++.|.+.-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 76431 124555666655544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=1 Score=47.53 Aligned_cols=215 Identities=17% Similarity=0.216 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC----C------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS----T------------CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
.+.+.+++++...+++-.-.-++.+..+. + ..........-+..+.+...++-|+.+-+.-
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~--- 360 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ--- 360 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc---
Confidence 45566667777666665333333332221 1 0112234556667777777888887765442
Q ss_pred CCCCC--HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH
Q 006624 190 KCKPT--ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK 267 (638)
Q Consensus 190 ~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 267 (638)
+..++ ........+-+.+.|++++|...|-+-...-. | ..++.-|....+..+-..+++.+.+.|+. +..
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--P-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--h-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence 11111 22233444556678888888888877654221 2 23556666667777778888888888864 666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
.-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++|..+-..... .......++ -
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e 501 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---E 501 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---H
Confidence 66788889999988888777666544 2221 11234556667777777777665544332 233333333 3
Q ss_pred ccCCHHHHHHHHHHH
Q 006624 348 RAGRLEDALKLFNKM 362 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~ 362 (638)
..+++++|++.+..+
T Consensus 502 ~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 502 DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCHHHHHHHHhcC
Confidence 457788888888776
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0075 Score=44.39 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+|+.+...|...|++++|++.|++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44445555555555555555555443
|
... |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.057 Score=43.68 Aligned_cols=100 Identities=15% Similarity=0.119 Sum_probs=54.6
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 006624 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILG 590 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 590 (638)
|..++..++.++++.|+.+....+++..-. +.++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666677777777777666666654331 1111000 0000 0111345566666667777
Q ss_pred HHHhcCCHHHHHHHHHHHHh-CCCCCCHhhHHHHHHHHhcc
Q 006624 591 CLSRAGMFEEAARLMKDMNA-KGFEYDQITYSSILEAVGKV 630 (638)
Q Consensus 591 ~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~ 630 (638)
+|+..|++..|.++++...+ .+++.+..+|..|++-+...
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 77767777777776666554 55666666666666654433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.46 Score=48.32 Aligned_cols=102 Identities=19% Similarity=0.164 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIK 379 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~ 379 (638)
+..+...+...+.+...+.-|-++|..|-. ...++......+++++|..+-+...+ ..||+. ....+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy--~pyaq 812 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPE--FKDDVY--MPYAQ 812 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCcc--cccccc--chHHH
Confidence 444555555566667777778888877643 23456677788888888888877655 223432 11111
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 380 SLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKG 437 (638)
Q Consensus 380 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 437 (638)
.+....+.. -.-.+|.+.|+-.+|.++++++....
T Consensus 813 wLAE~DrFe-----------------------EAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 813 WLAENDRFE-----------------------EAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred HhhhhhhHH-----------------------HHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 122222211 22345778888888888888876543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.74 Score=44.03 Aligned_cols=252 Identities=15% Similarity=0.126 Sum_probs=151.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----hcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 349 AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLF----ESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 349 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 424 (638)
.|+++.|.+-|+.|.. |..+-..=+++++ +.|. .+++..+-+.....- +.-...+...+...|..|+++
T Consensus 133 eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga-reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 133 EGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA-REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred cCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc-HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChH
Confidence 4666666666666654 2222222222222 2233 233344444433321 223456778888999999999
Q ss_pred HHHHHHHHHHhCC-CCCCHhh--HHHHHHH--HH-ccCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHhcCCHHHHH
Q 006624 425 KAHLLLEEMEEKG-FPPCPAA--YCSLING--YG-KAKRYEAANELFLELKEYCGCSSARV-YAVMIKHFGKCGRLSDAV 497 (638)
Q Consensus 425 ~A~~~~~~~~~~~-~~~~~~~--~~~li~~--~~-~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~ 497 (638)
.|+++++.-.+.. +.++..- -..|+.+ -. -..+...|...-.+..+ ..|+..- --.-...+.+.|+..++-
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~ 283 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGS 283 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhh
Confidence 9999998765432 2333321 1112211 11 12345566666666555 3344322 233456788999999999
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 498 DLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED-GCVP-DINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 498 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
.+++.+-+..-.|+ .+. +....+.|+ .+..-+++.... .++| +.++...+..+-...|++..|..--+....
T Consensus 284 ~ilE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 284 KILETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred hHHHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 99999998754454 332 222345554 344444433321 2344 466777788888899999998887777764
Q ss_pred CCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCH
Q 006624 576 SEIKPDAVSYNTILGCLSRA-GMFEEAARLMKDMNAKGFEYDQ 617 (638)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p~~ 617 (638)
..|....|..|.+.-... ||-.++..++.+..+..-.|+.
T Consensus 358 --~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW 398 (531)
T COG3898 358 --EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAW 398 (531)
T ss_pred --hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcc
Confidence 468888888888876555 9999999999999877655553
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.09 Score=44.34 Aligned_cols=72 Identities=18% Similarity=0.264 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-----KGFEYDQITYS 621 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 621 (638)
....++..+...|++++|.++.+++.... +-|...|..++.+|...|+..+|.++|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 34456666778888888888888888643 23677888888888888888888888877642 48888877643
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0092 Score=43.91 Aligned_cols=62 Identities=24% Similarity=0.305 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHS----EI-KPD-AVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 548 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..++...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555666666666666666655431 11 111 3456666666666666666666666654
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.019 Score=41.57 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=37.5
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..|.+.+++++|++.++.+...++ .+...+......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456667777777777777776654 45566666666666777777777777766664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.031 Score=47.16 Aligned_cols=70 Identities=21% Similarity=0.423 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
+...++..+...|++++|..+.+.+....| -|...|..+|.++...|+..+|.++|+.+.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP--~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDP--YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST--T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 445566677778888888888888887775 5777888888888888888888888876643 366666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.89 Score=44.29 Aligned_cols=76 Identities=11% Similarity=0.073 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKG---FPPCPAAYCSLINGYGK---AKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
.++-+|....+++..+++.+.+.... +......-....-++.+ .|+.++|.+++..+......+++.+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44445777777777777777776542 12222333334445555 6677777777777555556666666666665
Q ss_pred HH
Q 006624 486 HF 487 (638)
Q Consensus 486 ~~ 487 (638)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.28 Score=41.16 Aligned_cols=92 Identities=9% Similarity=-0.051 Sum_probs=68.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006624 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG 350 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 350 (638)
....-+...|++++|..+|+-+...++. +...+..|..++-..+++++|+..|......+.. |...+--...+|...|
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhC
Confidence 3445566788888888888888776654 6667777777888888888888888777665432 4444555677888888
Q ss_pred CHHHHHHHHHHHHH
Q 006624 351 RLEDALKLFNKMEA 364 (638)
Q Consensus 351 ~~~~A~~~~~~~~~ 364 (638)
+.+.|...|....+
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 88888888888766
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.33 E-value=1.7 Score=45.40 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=57.4
Q ss_pred hCCCCCCHHHHHH-----HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCC
Q 006624 153 RSTCVMGPSVLSE-----IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY--YEKIHELYNEMCNEG 225 (638)
Q Consensus 153 ~~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 225 (638)
+-|.+.+..-|.. +++-+...+.+..|+++-..+...-.. +...|.....-+.+..+ -+++++..++=....
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3456665555533 566677777888888877766433111 14455555555555532 233444443333321
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 006624 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
. ....+|..+.+.....|+.+-|..+++.
T Consensus 504 ~--~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L--TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C--CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 1 3455677777777778888888777754
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.9 Score=45.76 Aligned_cols=179 Identities=11% Similarity=0.099 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPS----VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
......-+..+.+...+.-|+.+.+.- ..+.. ++....+-+.+.|++++|...|-+-... .+| ..
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~ 402 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SE 402 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HH
Confidence 345667788889999999998887742 22333 3444555667889999999988776654 222 23
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
++.-|....+...-..+++.+.+.|. .+...-..|+..|.+.++.++-.++.+.-. .|.- ..-....+..+.+.+
T Consensus 403 Vi~kfLdaq~IknLt~YLe~L~~~gl--a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn 477 (933)
T KOG2114|consen 403 VIKKFLDAQRIKNLTSYLEALHKKGL--ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN 477 (933)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccc--ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence 55666777777778888888888887 566677889999999999988777765544 2211 112345667777777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
-.++|.-+-..... .......++ -..|++++|++.+..+
T Consensus 478 yl~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 478 YLDEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred hHHHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 77777766655433 333444443 3568899999888765
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.53 Score=44.45 Aligned_cols=205 Identities=13% Similarity=0.039 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCCC---CH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS--TCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKP---TA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~---~~ 195 (638)
..+|..+..++.+.|.+.++...--.-+.. .+..+ -..|..+.+.+-+.-++.+++.+-..-... |..| ..
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 357788888888999888776644322221 01111 234555556666655666666655444332 2222 22
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCCCHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNC----FPDTVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQPTAK 267 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~ 267 (638)
....++..++...+.++++++.|+...+.... ......+-.|...|.+..|+++|.-+..+..+. ++..=..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 34556778888899999999999998754321 123357889999999999999998877766542 2221111
Q ss_pred -----HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006624 268 -----IYTTLVSIYFKLGEVEKALGLVQEMKG----KGCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 268 -----~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
....+.-++...|++.+|.+..++..+ .|-.+ -......+.+.|...|+.+.|+.-|++...
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 223344566778888888877776543 34221 233455678889999999999988887654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.73 Score=42.58 Aligned_cols=123 Identities=12% Similarity=0.067 Sum_probs=64.2
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006624 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.....|++.+|...|......... +...--.++.+|...|+.+.|..++..+...... ........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcCC
Confidence 445566666666666666555333 3445555666666667777766666665443221 11111222333444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+..+
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444444332 225555566666666666666666665555443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.5 Score=42.97 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=89.1
Q ss_pred HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHH-HHHH
Q 006624 512 VYTYNALMSGMVRAGMIDDAYSLLRRMEEDG-CVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSY-NTIL 589 (638)
Q Consensus 512 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~ 589 (638)
...|..++.+..+..-.+.|..+|-++.+.| ..+++..+++++.-++ .|+...|.++|+.-... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4456667777777888899999999999988 6678888999888665 57889999999985543 3555444 4566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHhccCCcc
Q 006624 590 GCLSRAGMFEEAARLMKDMNAKGFEYD--QITYSSILEAVGKVDEDR 634 (638)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~ 634 (638)
.-+.+-++-+.|..+|+...+. +..+ ..+|..+|+-=.+.|+..
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN 519 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLN 519 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchH
Confidence 7778899999999999966543 2333 347888888777777653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.092 Score=51.67 Aligned_cols=67 Identities=12% Similarity=-0.036 Sum_probs=44.0
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+.+...++.+..+|.+.|++++|+..|++..+..+. +. .+|..+..+|...|++++|++.+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445666777777777777777777777776665332 12 34666777777777777777777777664
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.076 Score=48.32 Aligned_cols=98 Identities=17% Similarity=0.189 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH-HHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT-VTYSALI 238 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~ 238 (638)
.|+.-+. +.+.|++..|...|...++..+. -...++..|...+...|++++|...|..+.+..+..|.. ..+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444433 34556677777777777666332 234456667777777777777777777777765543333 5666677
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 006624 239 SAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....+.|+.++|...|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 7777777777777777777765
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.094 Score=51.60 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+.+...|+.+..+|.+.|++++|+..|+..+.. .|+. .+|..+..+|...|++++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 446789999999999999999999999998884 4443 35899999999999999999999998875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.57 Score=37.34 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 547 INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
....+..+..+...|+-+.-.++++.+.. +-.+++...-.+..+|.+.|+..++.+++++.-+.|+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444556666777777777777777654 2346666677777777777777777777777777664
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.04 E-value=1.4 Score=41.79 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=85.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHH-------HHHHHHHHHhCC-CHHHHHHHHHHHhhC--------CCCCCH----
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSV-------LSEIVNILGKAK-MVNKALSIFYQIKSR--------KCKPTA---- 195 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~~~~---- 195 (638)
.+.|+++.|..++.+........++.. +..+.....+.+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456777777777766544321222222 222333334445 777776666554322 122222
Q ss_pred -HHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006624 196 -NTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 196 -~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.++..++.+|...+.. ++|..+.+.+....+ .....+..-+..+.+.++.+++.+.+.+|+..- .-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~--~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYG--NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHH
Confidence 3456667777776654 456666666665553 224445455666666778888888888887752 212333444
Q ss_pred HHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 272 LVSIY---FKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 272 li~~~---~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
+++.+ ... ....|...+..+....+.|..
T Consensus 161 ~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 161 ILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 44433 332 234555555555544344333
|
It is also involved in sporulation []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.24 Score=40.48 Aligned_cols=84 Identities=13% Similarity=0.184 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKC--KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
+..+..-.....+.|++++|.+.|+.+..+-+ .-...+...++.+|.+.+++++|+..+++.++.++.+|+ ..|...
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 34444455566778899999999999887722 224556677888999999999999999999998887665 445555
Q ss_pred HHHHHcc
Q 006624 238 ISAFGKL 244 (638)
Q Consensus 238 ~~~~~~~ 244 (638)
+.+++..
T Consensus 89 ~~gL~~~ 95 (142)
T PF13512_consen 89 MRGLSYY 95 (142)
T ss_pred HHHHHHH
Confidence 5555543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.99 E-value=1.8 Score=42.52 Aligned_cols=128 Identities=12% Similarity=0.138 Sum_probs=78.2
Q ss_pred HHccCC-HHHHHHHHHHHHHcCCCCcHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCH----hhHHHHH
Q 006624 452 YGKAKR-YEAANELFLELKEYCGCSSARVYAVMI----KHFGK---CGRLSDAVDLFNEMKKLRCKPDV----YTYNALM 519 (638)
Q Consensus 452 ~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~ 519 (638)
+-+.|. -++|..+++.+.+- .+-|...-|.+. ..|.. ...+..-+.+-+-+.+.|++|-. ..-|.|.
T Consensus 389 lW~~g~~dekalnLLk~il~f-t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF-TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLA 467 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHH
Confidence 334444 66677777776663 222332222221 12211 12333444444445666776643 3344454
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 006624 520 SG--MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNT 587 (638)
Q Consensus 520 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 587 (638)
++ +..+|++.++.-.-.-+.+ +.|++.+|..++-++....++++|..++..+ +|+..+++.
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 43 4578999998766555555 6899999999999999999999999999876 466666654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.6 Score=43.62 Aligned_cols=154 Identities=9% Similarity=0.008 Sum_probs=110.0
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcC
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAK----IYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g 280 (638)
+...|++.+|...++++++..| .|...+.-.-.++...|+.+.-...++++... ..+|.. .-..+.-++..+|
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence 3457888888888999998776 67888888888888999998888888888754 224443 3344555667889
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHccCCHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK---PDIVLINNLINVLGRAGRLEDALK 357 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~ 357 (638)
-+++|++.-++..+.+.. |...-.+..+.+...|++.++.++..+-...=-. .-..-|--..-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 999999999988887755 7888888888888999999998877654321000 001112223334556688999999
Q ss_pred HHHHH
Q 006624 358 LFNKM 362 (638)
Q Consensus 358 ~~~~~ 362 (638)
+|+.-
T Consensus 269 IyD~e 273 (491)
T KOG2610|consen 269 IYDRE 273 (491)
T ss_pred HHHHH
Confidence 88764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.41 Score=46.15 Aligned_cols=140 Identities=17% Similarity=0.079 Sum_probs=96.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
-.+.|.+.|++..|..-|+++...= .+...-+. +. .+..... -..++..+.-++.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l-------------~~~~~~~~-ee-~~~~~~~-------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFL-------------EYRRSFDE-EE-QKKAEAL-------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHh-------------hccccCCH-HH-HHHHHHH-------HHHHhhHHHHHHHhhh
Confidence 3556788899999998888875410 00111111 11 1111111 2346677888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH-HHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD-AVDLF 500 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 500 (638)
++..|++.-+..+..+ ++|..+...-..++...|+++.|+..|+++.+. .|.|-.+-+.++.+-.+..+..+ ..++|
T Consensus 272 ~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~-~P~Nka~~~el~~l~~k~~~~~~kekk~y 349 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL-EPSNKAARAELIKLKQKIREYEEKEKKMY 349 (397)
T ss_pred hHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999987 888889888899999999999999999999986 34455556666666555544433 35666
Q ss_pred HHHHh
Q 006624 501 NEMKK 505 (638)
Q Consensus 501 ~~m~~ 505 (638)
..|..
T Consensus 350 ~~mF~ 354 (397)
T KOG0543|consen 350 ANMFA 354 (397)
T ss_pred HHHhh
Confidence 66654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.14 Score=49.24 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLV 273 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li 273 (638)
..+++.+...+.+.+++.+|++.-+..+...+ +|+.....=..++...|+++.|+..|+++.+. .| |..+-+-|+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~ 332 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELI 332 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 34556666677777777777777777777665 66666666677777777777777777777764 34 333444455
Q ss_pred HHHHhcCCH-HHHHHHHHHHHh
Q 006624 274 SIYFKLGEV-EKALGLVQEMKG 294 (638)
Q Consensus 274 ~~~~~~g~~-~~A~~~~~~m~~ 294 (638)
.+--+.... ++..++|..|..
T Consensus 333 ~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 333 KLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 444444443 333566666654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.27 Score=38.92 Aligned_cols=92 Identities=21% Similarity=0.148 Sum_probs=54.1
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHcc
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKL 244 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~ 244 (638)
.++...|+.+.|++.|.+....-+ -....||.-..++--+|+.++|++-+++.++.... ... ..|.--...|...
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~-~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGD-QTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHh
Confidence 345566677777777766665532 25666777777776677777777777666654432 111 1222233445556
Q ss_pred CChHHHHHHHHHHHHCC
Q 006624 245 GRDISAIRLFDEMKENG 261 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g 261 (638)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 67777777776666655
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.18 Score=45.90 Aligned_cols=99 Identities=13% Similarity=0.079 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P-TANTYNSMI 202 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~ 202 (638)
.|+.-+. +.+.|++..|...|..+++... .-.+..+.-|..++...|++++|..+|..+.+..++ | -++++--+.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5766655 4567889999999999998631 234567788999999999999999999999876322 2 357888899
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
....+.|+-++|...|+++.+..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999874
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.32 Score=39.40 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
|..++..++.++++.|+.+....+++..-.- .++... ..+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI--~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGI--DVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCC--CCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4567888888899999988888888765432 111000 0000 1122234566666666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+|+.+|++..|+++.+...+..+.+-+...|..|+.-..
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 666666666666666666655444344556666655443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.66 E-value=3 Score=42.61 Aligned_cols=92 Identities=9% Similarity=0.097 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-ccCChHHHHHHHHHHHHC-CCC-CCHHHHHHHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-KLGRDISAIRLFDEMKEN-GLQ-PTAKIYTTLVSIYF 277 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~-g~~-~~~~~~~~li~~~~ 277 (638)
....-.+.|..+.+.++|++-+..-+ -....|.....-++ ..|+.+...+.|+..... |.. .....|-..|..-.
T Consensus 85 fA~~E~klg~~~~s~~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en 162 (577)
T KOG1258|consen 85 FADYEYKLGNAENSVKVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFEN 162 (577)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHh
Confidence 33333445555555555555554221 22233333222222 234444444455444432 111 12333444444444
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006624 278 KLGEVEKALGLVQEMKG 294 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~ 294 (638)
.++++.....+++..++
T Consensus 163 ~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 163 GQKSWKRVANIYERILE 179 (577)
T ss_pred ccccHHHHHHHHHHHHh
Confidence 45555555555555544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.34 Score=39.69 Aligned_cols=86 Identities=6% Similarity=-0.086 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
...+-.-.....+.|++.+|.+.|+.+...- .+-...+-..++.+|.+.|++++|...+++..+..+..-...|-..+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 3444455666778999999999999998762 12345667788999999999999999999999986654455666666
Q ss_pred HHHHhcCC
Q 006624 203 LMLMQEGY 210 (638)
Q Consensus 203 ~~~~~~g~ 210 (638)
.+++.-.+
T Consensus 90 ~gL~~~~~ 97 (142)
T PF13512_consen 90 RGLSYYEQ 97 (142)
T ss_pred HHHHHHHH
Confidence 66654433
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.78 Score=47.12 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=54.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 006624 491 GRLSDAVDLFNEMKKLRCKPDVYTYNAL-MSGMVRAGMIDDAYSLLRRMEEDGC---VPDINSHNIILNGLAKSGGPKRA 566 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A 566 (638)
...+.|.++++.+.+. -|+...|... ...+...|+.++|++.|++...... +.....+--+...+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3445556666655553 3554444322 2334455666666666665442100 01122233344555566666666
Q ss_pred HHHHHHhhhCCCCCCHHHHHH-HHHHHHhcCCH-------HHHHHHHHHHH
Q 006624 567 MEIFTKMQHSEIKPDAVSYNT-ILGCLSRAGMF-------EEAARLMKDMN 609 (638)
Q Consensus 567 ~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~m~ 609 (638)
.+.|.++.+.+-. ...+|.- ...++...|+. ++|.++|++..
T Consensus 325 ~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666666653211 2222222 22233445555 56666655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.1 Score=46.07 Aligned_cols=162 Identities=17% Similarity=0.078 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh------hHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHHH
Q 006624 410 YSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA------AYCSLINGYGK----AKRYEAANELFLELKEYCGCSSARV 479 (638)
Q Consensus 410 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~ 479 (638)
+..++....-.|+-+.+++++.+..+.+---.+. .|...+..++. ....+.|.+++..+.+. . |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-y-P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-Y-PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-C-CCcHH
Confidence 4455666667788888888887765533111121 23333333332 34677888888888774 2 34333
Q ss_pred H-HHHHHHHHhcCCHHHHHHHHHHHHhCC-CC--CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 480 Y-AVMIKHFGKCGRLSDAVDLFNEMKKLR-CK--PDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 480 ~-~~li~~~~~~g~~~~A~~~~~~m~~~~-~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 555 (638)
| -.-.+.+...|++++|++.|++..... -. .....+--+...+.-.+++++|.+.|.++.+.. .-...+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence 3 333455667788888888888654311 01 112334445566777888888888888888752 223334433332
Q ss_pred -HHHhcCCH-------HHHHHHHHHhh
Q 006624 556 -GLAKSGGP-------KRAMEIFTKMQ 574 (638)
Q Consensus 556 -~~~~~g~~-------~~A~~~~~~m~ 574 (638)
++...|+. ++|.++|.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 33456666 77777777764
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.31 Score=49.20 Aligned_cols=157 Identities=17% Similarity=0.180 Sum_probs=92.2
Q ss_pred HHHHhcCChHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 133 RCLDETRMIGVMWKSIQ--DMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY 210 (638)
Q Consensus 133 ~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 210 (638)
+...-+++++++.+.+. +++. .......+.++..+.+.|..+.|+.+-. |+. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCC
Confidence 44455677777666654 1221 1224557778888888888888887632 332 23445567788
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQ 290 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 290 (638)
++.|.+..++. ++...|..|.....+.|+++-|.+.|.+..+ |..|+-.|.-.|+.++-.++.+
T Consensus 334 L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 334 LDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHH
Confidence 88887764332 5667788888888888888888887766543 4566667777788777777776
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 291 EMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 291 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
.....|- ++....++.-.|++++..+++.+
T Consensus 398 ~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 398 IAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665542 34444455556777766666544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.52 Score=47.65 Aligned_cols=157 Identities=14% Similarity=0.094 Sum_probs=91.2
Q ss_pred HHhcCCHHHHHHHHHHHH-hCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 006624 417 FCKTNRVEKAHLLLEEME-EKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSD 495 (638)
Q Consensus 417 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 495 (638)
..-.++++.+.++.+.-. -..+ +..-...++..+-+.|-.+.|+++..+-.. -.....++|+++.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 445677777666664211 1111 244567777777888888888776554322 1334456788888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 496 AVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 496 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|.++.++. ++...|..|.......|+++-|.+.|.+..+ |..|+-.|.-.|+.+.-.++.+....
T Consensus 337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 77665432 3666888888888888888888888877543 44566667777887777777766665
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 576 SEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
.|- ++....++.-.|+.++..+++.+-
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 542 444555556667777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.5 Score=36.59 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Q 006624 516 NALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~ 538 (638)
..++..|.+.+-++++..++.++
T Consensus 73 ~~~~~~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 73 EKVGKLCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHcCcHHHHHHHHHhh
Confidence 33444455555555555555443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.27 E-value=3 Score=40.21 Aligned_cols=101 Identities=14% Similarity=0.163 Sum_probs=49.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRL 493 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 493 (638)
+.-+...|+...|.++-.+.. -|+...|...+.+++..+++++-.++... .-++.-|..++.++.+.|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444555555555443331 34555555555555555555554443221 12234455555555555555
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 494 SDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 494 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.+|..+..++ ++..-+..|.+.|++.+|.+.
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 5555555441 112334455555555555543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=2.3 Score=38.75 Aligned_cols=224 Identities=19% Similarity=0.131 Sum_probs=122.9
Q ss_pred cCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCV-MGPSVLSEIVNILGKAKMVNKALSIFYQIKSR-KCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
.+.+..+...+......... ............+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 34445555555555443211 12455666666667777777777776666542 22335555666666666677777777
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 216 ELYNEMCNEGNCFPDTVTYSALIS-AFGKLGRDISAIRLFDEMKENGL--QPTAKIYTTLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (638)
+.+......... +......... .+...|+++.|...+++...... ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPD--PDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 777777664432 1122222222 56667777777777777654211 012333333444455666777777777766
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 293 KGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 293 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
...........+..+...+...++++.|...+......... ....+..+...+...+..+.+...+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 65532213455666666666666777777777766664222 123333333344455556666666666554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.23 E-value=2.2 Score=40.57 Aligned_cols=130 Identities=15% Similarity=0.329 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cC----CHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCCh
Q 006624 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQ--EG----YYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 247 (638)
+++...+++.|.+.|+..+..+|-+....+.. .. ...+|.++|+.|.+..+. .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677888888887777666553333222 12 245677888888776543 2344555555443 22332
Q ss_pred ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006624 248 ----ISAIRLFDEMKENGLQPTAK--IYTTLVSIYFKLGE--VEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 248 ----~~A~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
+.+..+++.+.+.|+..+.. ....++........ ..++.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 34455555555555544322 22222222111111 23455555666666555555444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.6 Score=37.83 Aligned_cols=209 Identities=11% Similarity=0.086 Sum_probs=104.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-...|.--..+|....+++.|...+.+..+. ...+ . ..|.....++.|.-+..++.+. .--+..|+--..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnn-r------slfhAAKayEqaamLake~~kl--sEvvdl~eKAs~ 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENN-R------SLFHAAKAYEQAAMLAKELSKL--SEVVDLYEKASE 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhc-c------cHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence 3456777777788888888888877766541 1111 1 1222333455566666666554 112344556666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC---C--CCCCHHHHHHHHHHHHh
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN---G--LQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---g--~~~~~~~~~~li~~~~~ 278 (638)
.|...|.++-|-..+++.-+. ...-+.++|++++.+.... + .+.-...+.....++.+
T Consensus 100 lY~E~GspdtAAmaleKAak~-----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr 162 (308)
T KOG1585|consen 100 LYVECGSPDTAAMALEKAAKA-----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR 162 (308)
T ss_pred HHHHhCCcchHHHHHHHHHHH-----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh
Confidence 777777777666555554321 1112333444444433211 0 00011223334445555
Q ss_pred cCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHccC
Q 006624 279 LGEVEKALGLVQEMKGK----GCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC---KPDIVLINNLINVLGRAG 350 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g 350 (638)
...+++|-..+.+-... .-.++ -..|...|-.+....++..|..+++.-.+.+- .-+..+...|+.+| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 56665555444332211 01111 12344555556666777777777776544321 12444566666655 346
Q ss_pred CHHHHHHHHH
Q 006624 351 RLEDALKLFN 360 (638)
Q Consensus 351 ~~~~A~~~~~ 360 (638)
|.+++.+++.
T Consensus 242 D~E~~~kvl~ 251 (308)
T KOG1585|consen 242 DIEEIKKVLS 251 (308)
T ss_pred CHHHHHHHHc
Confidence 6666555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=2.2 Score=42.50 Aligned_cols=118 Identities=13% Similarity=0.110 Sum_probs=51.6
Q ss_pred HHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 006624 106 NVKIQFFKWAGRRRNFEHN-STTYMALIRCLDE---------TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM 175 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (638)
..|+.+|..+.......|+ ...|..+..++.. .....+|.++.+..++.+ +.|+.....+..+..-.|+
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc
Confidence 5567777766533333332 3334333333221 112223444444444433 3344444444444444444
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.|..+|++....++. ...+|......+.-.|+.++|.+.+++..+..
T Consensus 354 ~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 354 AKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 55555555555444322 33334444444444455555555555544443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.3 Score=35.33 Aligned_cols=89 Identities=17% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH---HHHHHHHHHHccCC
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-GCKPDIV---LINNLINVLGRAGR 351 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~---~~~~l~~~~~~~g~ 351 (638)
+...|+++.|++.|.+.+..-+. ....||.-..++.-+|+.++|++-+++.++. |.. ... .|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 33445555555555555443222 4455555555555555555555555555442 211 111 22222334555566
Q ss_pred HHHHHHHHHHHHHCC
Q 006624 352 LEDALKLFNKMEALQ 366 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~ 366 (638)
.+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666665555444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.94 E-value=3.5 Score=39.16 Aligned_cols=63 Identities=17% Similarity=0.204 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 267 KIYTTLVSIYFKLGEV---EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.++..++.+|...+.. ++|.++++.+...... ....+..-++.+.+.++.+++.+.+.+|+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 3555666666666654 4455555555444322 2344444455566677777777777777765
|
It is also involved in sporulation []. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.91 E-value=4.6 Score=40.33 Aligned_cols=163 Identities=16% Similarity=0.100 Sum_probs=96.2
Q ss_pred HHH--HHHHHHHHhc--C---CHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 006624 196 NTY--NSMILMLMQE--G---YYEKIHELYNEMCNEGNCFPD-TVTYSALISAFG---------KLGRDISAIRLFDEMK 258 (638)
Q Consensus 196 ~~~--~~l~~~~~~~--g---~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~g~~~~A~~~~~~m~ 258 (638)
..| ..++++.... + ..++|+.+|.+........|+ ...|..+...+. ...+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554442 2 246788888888833222233 333333322222 1234456777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHH
Q 006624 259 ENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-DIV 337 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~ 337 (638)
+.+ +-|..+...+..+..-.++++.|...|++....++. ...+|....-.+.-.|+.++|.+.+++..+..+.- ...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 765 457777777777777777788888888888877654 45555555555667888888888888866643221 122
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHH
Q 006624 338 LINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 338 ~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
.....++.|+..+ ++.|.++|-+
T Consensus 410 ~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCc-hhhhHHHHhh
Confidence 3333444555544 5666666544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.86 E-value=2.7 Score=37.71 Aligned_cols=193 Identities=13% Similarity=0.096 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..|.....+|....++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+.. .-+..|+.-...
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls---Evvdl~eKAs~l 100 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS---EVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHH
Confidence 34556667777888888888877766532 111222221 2334556666666665532 223456666777
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcC
Q 006624 241 FGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK---GC--ALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~~~~~~~~~li~~~~~~g 315 (638)
|...|..+.|-..+++.-+. ...-++++|+++|++.... +- ..-...+......+.+..
T Consensus 101 Y~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~ 164 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLE 164 (308)
T ss_pred HHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhH
Confidence 88888888877777766542 2344556666666654321 10 011223444556677777
Q ss_pred CHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHH
Q 006624 316 RVEDAYGLFMNMLKE----GCKPDI-VLINNLINVLGRAGRLEDALKLFNKMEALQ---CKPNVVTYNTVIKS 380 (638)
Q Consensus 316 ~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~ 380 (638)
++++|-..+.+-... .-.++. ..|...|-.|.-..|+..|.+.++.--+.+ -.-+..+...|+.+
T Consensus 165 kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 165 KFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred HhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 887776665543321 011121 234455556666778888888888743322 12234455555544
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.84 E-value=2 Score=40.83 Aligned_cols=202 Identities=15% Similarity=0.101 Sum_probs=123.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC---CHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSR--KCK---PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP---DTVT 233 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 233 (638)
++..+..+..+.|.+++++..--.-... ... .-..+|..+.+++-+.-++.+++.+-..-.......| -...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 4445556677777777765543211110 001 1234455566666666666676666555443222112 1123
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGL-----QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKG----KGCALTVYTY 304 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~~~ 304 (638)
..++..++...+.++++++.|+...+.-. -....++..|...|.+..++++|.-+..+..+ .++..-...|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 44567778888899999999998875321 11345788999999999999998877655543 2332112223
Q ss_pred HH-----HHHHHHhcCCHHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 305 TE-----LIKGLGRAGRVEDAYGLFMNMLK----EGCKP-DIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 305 ~~-----li~~~~~~g~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.. +.-++...|+..+|.+..++..+ .|-.+ -......+.+.|...|+.+.|..-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 32 34467788988888888887655 33221 12344567788999999999888887753
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.6 Score=38.25 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
|...-..+...+...|+.++|.+.+-.+..
T Consensus 235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 235 DVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444555555666666666655555543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.72 E-value=2.1 Score=35.59 Aligned_cols=9 Identities=33% Similarity=0.412 Sum_probs=3.4
Q ss_pred CHHHHHHHH
Q 006624 281 EVEKALGLV 289 (638)
Q Consensus 281 ~~~~A~~~~ 289 (638)
+++.|.+++
T Consensus 111 d~~~a~~~~ 119 (140)
T smart00299 111 NYEKAIEYF 119 (140)
T ss_pred CHHHHHHHH
Confidence 333333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.11 Score=32.85 Aligned_cols=28 Identities=7% Similarity=0.044 Sum_probs=12.3
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 198 YNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+..+..+|.+.|++++|.++|+++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3334444444444444444444444433
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.67 E-value=1.8 Score=34.62 Aligned_cols=66 Identities=20% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 006624 407 PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG 473 (638)
Q Consensus 407 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 473 (638)
...+...++.+...|+-++-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.++.+.|.
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344556677778888888888888877644 67778888888888888888888888888777654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.12 Score=32.70 Aligned_cols=40 Identities=3% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
.++..+...|.+.|++++|+++|+++.+..+. |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 35566677777777777777777777766433 55555444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.22 Score=46.18 Aligned_cols=78 Identities=8% Similarity=0.059 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhh-----CCCCCCHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKS-----RKCKPTANTYNS 200 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ 200 (638)
.++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345555555555666666666666555543 44455555666666666666666666555543 345555554444
Q ss_pred HHHH
Q 006624 201 MILM 204 (638)
Q Consensus 201 l~~~ 204 (638)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=2.4 Score=35.74 Aligned_cols=125 Identities=14% Similarity=0.149 Sum_probs=69.9
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHH--HHHHHccC
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSAL--ISAFGKLG 245 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g 245 (638)
+.+.+..++|+.-|..+.+.|...-+. ..........+.|+-..|...|+++-...+. |-.. -...| .-.+...|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 355667777777777777765542222 2222334456677777777777777665433 3332 11111 22334556
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
.+++.....+.+...|-+.-...-..|.-+-.+.|++.+|.+.|..+...
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 66666666665554443334444555555666666666666666666553
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.34 Score=44.07 Aligned_cols=104 Identities=18% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCHhhHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 006624 510 PDVYTYNALMSGMVRA-----GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVS 584 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 584 (638)
-|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence 4555666666555432 445556666677777777777777777776654321 122221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCC
Q 006624 585 YNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDE 632 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 632 (638)
+....--|-+ .-+=++.++++|...|+-||..+-..|++++++.|.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111111 123467788888888888888888888888877654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.54 Score=42.80 Aligned_cols=106 Identities=18% Similarity=0.229 Sum_probs=62.4
Q ss_pred CCCHhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh
Q 006624 439 PPCPAAYCSLINGYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVY 513 (638)
Q Consensus 439 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 513 (638)
.-|..+|...+..+... +.++=....++.|.+.|+..|..+|+.|++.+-+-. +.|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv 127 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV 127 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH
Confidence 34555666666555432 445555555566666666666666666665543221 112111
Q ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 514 TYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGP 563 (638)
Q Consensus 514 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 563 (638)
.-...+ -|- ..-+-++.++++|..+|+.||..+-..|+.++.+.+-.
T Consensus 128 fQ~~F~-HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFL-HYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHh-hCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111 111 12245889999999999999999999999999887753
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.48 E-value=6.6 Score=40.26 Aligned_cols=135 Identities=10% Similarity=0.086 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|+.++.---.....+.+...+..++.. .|.-..-|......=.+.|..+.+.++|++-+.. ++.++..|.....
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 3445555555444444455666666666653 2333334555555566778888888888887753 4556666666655
Q ss_pred HHH-hcCCHhHHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 204 MLM-QEGYYEKIHELYNEMCNEGN-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 204 ~~~-~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
-++ ..|+.+...+.|+.+....+ ..-....|...|..-...++.....+++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 444 35677777777877765422 2234456777777777778888888888888774
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.8 Score=35.44 Aligned_cols=136 Identities=15% Similarity=0.213 Sum_probs=93.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH-
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPS-VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS- 200 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~- 200 (638)
.+...|..-++ +.+.+..++|+.-|.++.+.|...=+. ..-.........|+...|...|.++-.....|-..--..
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34556655554 467788889999999888775433222 233445567788999999999999877644444331111
Q ss_pred H--HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 M--ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
| .-.++.+|.+++.....+-+...+.. .-...-..|.-+-.+.|++.+|.+.|+.+...
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~-mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNP-MRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCCh-hHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1 23456789999988888888765542 44555677888888999999999999988764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.5 Score=41.14 Aligned_cols=155 Identities=10% Similarity=0.024 Sum_probs=107.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCcHHHHHHHHHHHHhcCCHH
Q 006624 418 CKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY---CGCSSARVYAVMIKHFGKCGRLS 494 (638)
Q Consensus 418 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~~ 494 (638)
-..|+..+|-..++++.+. .|.|..++...-++|...|+.+.-...++++... +.|....+-.....++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 4578888888888888876 4888888888888999999998888888888764 22222333344555666889999
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 495 DAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 495 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
+|.+.-++..+.+ +-|.-.-.++.+.+.-.|++.++.++..+-...=-..+ ..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888887765 44566667777778888999999887665443200001 1112222233456688899999998
Q ss_pred Hhh
Q 006624 572 KMQ 574 (638)
Q Consensus 572 ~m~ 574 (638)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 744
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.2 Score=37.02 Aligned_cols=71 Identities=21% Similarity=0.253 Sum_probs=38.3
Q ss_pred HccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLG 312 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 312 (638)
.+.|++++|.+.|+.+..+. -+-...+.-.++-++.+.++++.|+...++....-+......|...+.+++
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34566666666666665431 111234455556666667777777766666665544333344444444444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.16 E-value=4.9 Score=44.59 Aligned_cols=158 Identities=18% Similarity=0.246 Sum_probs=92.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL 253 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 253 (638)
+++++|+.-+.++.. ..|.-.++.--+.|.+.+|+.+|..=.+ .-...|.+....+...+.+++|.-.
T Consensus 894 ~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~~~~e-----~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 894 KRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYKPDSE-----KQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheeccCHH-----HHHHHHHHHHHHHHHhccccHHHHH
Confidence 466667666555431 1233333434566777777776532111 1123344445555566777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 254 FDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY--TYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
|+..-+. .--+.+|..+|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+....
T Consensus 962 Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen 962 YERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred HHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence 7654321 23466777888888888888776532 1222 2255677777888888888888777654
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 332 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
. ...+..||+...+++|..+.....
T Consensus 1029 ---~----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 ---P----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ---H----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1 123445666677788777766543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.13 E-value=6.3 Score=39.57 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
-..+..++-+.|+.++|++.+++|.+..+.. .......|+.++...+.+.++..++.+-.
T Consensus 262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3445556666666666666666665543221 23345556666666666666666666643
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.77 E-value=6.3 Score=37.59 Aligned_cols=139 Identities=14% Similarity=0.230 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--CC----CHHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHhcCC--
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGK--AK----MVNKALSIFYQIKSRKCK---PTANTYNSMILMLMQEGY-- 210 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~-- 210 (638)
++...+++.|.+.|...+..++.+..-.... .. ...+|..+|+.|++..+. ++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4666677888888888777666654333333 22 456799999999887432 223333333322 3333
Q ss_pred --HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 211 --YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR---DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 211 --~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
.+.+...|+.+.+.|..+-|...+.+-+-+++.... +..+.++++.+.+.|+++....|..+.-...-.+..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~ 233 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPE 233 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCch
Confidence 356778888888877654555444444444443322 457888999999999998888877666555444443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.77 E-value=8.3 Score=38.75 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 411 SILIDGFCKTNRVEKAHLLLEEMEEKGFP-PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 411 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
..+..++-+.|+.++|++.++++.+..-. ........|+.++...+.+.++..++.+-.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 44556666777777777777777654311 2233556677777777777777777766543
|
The molecular function of this protein is uncertain. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.20 E-value=2.1 Score=32.49 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=43.8
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQEL 89 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHHHH
Confidence 56667777777788899999999999999999999999999988764 233333787777644
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.7 Score=37.77 Aligned_cols=96 Identities=15% Similarity=0.161 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHH--HH
Q 006624 479 VYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD--VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP-DINSHN--II 553 (638)
Q Consensus 479 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~--~l 553 (638)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.++......+++..+.....++...--.+ |...-+ ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455666667777777777777777666543333 2334556666666777777766666555421111 111111 11
Q ss_pred HH--HHHhcCCHHHHHHHHHHhh
Q 006624 554 LN--GLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 554 ~~--~~~~~g~~~~A~~~~~~m~ 574 (638)
.. .+...|++.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccC
Confidence 11 2245567777777766654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.12 E-value=6.1 Score=35.30 Aligned_cols=24 Identities=4% Similarity=0.263 Sum_probs=13.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 593 SRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 593 ~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
...|++.+|+++|++.....+..+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 345566666666666655443333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.3 Score=41.14 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKIY 269 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~ 269 (638)
..++..++..+...|+++.+.+.++++....+ -+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34455666777777777777777777777665 5777777777777777777777777776654 4666666555
Q ss_pred HHHHHH
Q 006624 270 TTLVSI 275 (638)
Q Consensus 270 ~~li~~ 275 (638)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 444433
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=7.2 Score=35.35 Aligned_cols=119 Identities=24% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 209 GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN-GLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
+....+...+...............+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443321002344555555555555555555555555431 122334444455555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHH
Q 006624 288 LVQEMKGKGCALTVYTYTELIK-GLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~ 328 (638)
.+.........+ ......... .+...|+++.|...+.+..
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555443322 111111111 4445555555555555553
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=92.70 E-value=17 Score=39.21 Aligned_cols=477 Identities=13% Similarity=0.082 Sum_probs=212.8
Q ss_pred HHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhCCCHH
Q 006624 106 NVKIQFFKWAGRRRNFEH--NSTTYMALIRCLD-ETRMIGVMWKSIQDMVRSTCVMGP-----SVLSEIVNILGKAKMVN 177 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~--~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~ 177 (638)
..|++.+.-+.++...+| ...++.-++++|. ...++++|...+++.......++. ..-..++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 456666666655444444 2356666777766 677888888888766443212221 12234455555555444
Q ss_pred HHHHHHHHHhhC--C--CCCCHHHHHHH-HHHHHhcCCHhHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHH--ccCChH
Q 006624 178 KALSIFYQIKSR--K--CKPTANTYNSM-ILMLMQEGYYEKIHELYNEMCNEGN--CFPDTVTYSALISAFG--KLGRDI 248 (638)
Q Consensus 178 ~A~~~~~~~~~~--~--~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~--~~g~~~ 248 (638)
|....++..+. + ..+-...+..+ +..+...+++..|.+.++.+..... ..|....+..++.+.. +.+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 77777765543 1 11112222333 2222333677777777777654321 1133444444444443 345556
Q ss_pred HHHHHHHHHHHCCC---------CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhC---CCCCCHHHHHH-----HHH
Q 006624 249 SAIRLFDEMKENGL---------QPTAKIYTTLVSIYF--KLGEVEKALGLVQEMKGK---GCALTVYTYTE-----LIK 309 (638)
Q Consensus 249 ~A~~~~~~m~~~g~---------~~~~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~---~~~~~~~~~~~-----li~ 309 (638)
++.+.++++..... .|...+|..+++.++ ..|+++.+...++++.+. .-... .|.. .+.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~--~w~~~~~d~~i~ 274 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSP--SWPSWDEDGSIP 274 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCc--cCCCcCCCeeEE
Confidence 66666665532211 234455555555443 456655655555544321 00000 0000 000
Q ss_pred HHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHHHHC--------CCCCCHhHHHHH
Q 006624 310 GLGRAGRVE--DAYGLFMNMLKEGCKPDIVLINNLIN--VLGRAGRLEDALKLFNKMEAL--------QCKPNVVTYNTV 377 (638)
Q Consensus 310 ~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~--------~~~p~~~~~~~l 377 (638)
.-...+... ...-+|.-+-+ .+.....-++. ..+..+..+.|.+++++..+. ...+. .+...+
T Consensus 275 l~~~~~~~~~~~~~~~f~wl~~----~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~-~sl~~~ 349 (608)
T PF10345_consen 275 LNIGEGSSNSGGTPLVFSWLPK----EELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS-ESLSEA 349 (608)
T ss_pred eecccccccCCCceeEEeecCH----HHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC-cCHHHH
Confidence 000000000 00001111100 01122222222 233344444666666655331 00000 011000
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC------CHhhHHHHH
Q 006624 378 IKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF--PP------CPAAYCSLI 449 (638)
Q Consensus 378 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~------~~~~~~~li 449 (638)
... ..++..+.. ...-..+-..+-.+++.+|...++++.+..- ++ .+..+...+
T Consensus 350 ~~~-----------~~~~~~l~~-------~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~g 411 (608)
T PF10345_consen 350 SER-----------IQWLRYLQC-------YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLG 411 (608)
T ss_pred HHh-----------HHHHHHHHH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHH
Confidence 000 111111110 0111122234457889899999998875421 11 123333344
Q ss_pred HHHHccCCHHHHHHHHH--------HHHHcCCCCcHHHHHHHHH----HHHhcCCHHH--HHHHHHHHHhC-CCCCC--H
Q 006624 450 NGYGKAKRYEAANELFL--------ELKEYCGCSSARVYAVMIK----HFGKCGRLSD--AVDLFNEMKKL-RCKPD--V 512 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~li~----~~~~~g~~~~--A~~~~~~m~~~-~~~p~--~ 512 (638)
-.+...|+.+.|...|. .....+...+..++..+=. -+......++ +..+++.+... .-.|+ .
T Consensus 412 l~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~ 491 (608)
T PF10345_consen 412 LYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYN 491 (608)
T ss_pred HHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHH
Confidence 44556799999999997 4444444455554443211 1222223333 67777766542 11222 3
Q ss_pred hhHHHH-HHHHHHcC--CHHHHHHHHHHHHHCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC--
Q 006624 513 YTYNAL-MSGMVRAG--MIDDAYSLLRRMEEDG---CVPD---INSHNIILNGLAKSGGPKRAMEIFTKMQHS-EIKP-- 580 (638)
Q Consensus 513 ~~~~~l-~~~~~~~g--~~~~A~~~~~~~~~~~---~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p-- 580 (638)
.++..+ +.++.... ...++...+.+..+.- ...+ ..+++.+...+. .|+..+..+........ .-.|
T Consensus 492 ~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~ 570 (608)
T PF10345_consen 492 RTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDY 570 (608)
T ss_pred HHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhh
Confidence 333333 33332221 2234444443333211 1111 223343444444 67877766665554321 1112
Q ss_pred CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHH
Q 006624 581 DAVSYNT-----ILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 581 ~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
....|.. +...+...|+.++|.....+..
T Consensus 571 ~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 571 SDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 3345533 3344777899999998887765
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.68 E-value=12 Score=37.55 Aligned_cols=408 Identities=11% Similarity=0.090 Sum_probs=215.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Q 006624 108 KIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQI 186 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~ 186 (638)
-..+|+-+. ..|++|+..|...+.-+-+.+.+.++-.+|.+|+... +.++..|..-......-+ +++.|..+|..-
T Consensus 90 Iv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 90 IVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 344455443 3457799999999999988898999999999999863 556666665555544444 599999999988
Q ss_pred hhCCCCCCHHHHHHHHHHHHh---------------cCCH----hHHHHHHHHHH-----hCCCCCCCHH---H-H----
Q 006624 187 KSRKCKPTANTYNSMILMLMQ---------------EGYY----EKIHELYNEMC-----NEGNCFPDTV---T-Y---- 234 (638)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~---------------~g~~----~~A~~~~~~~~-----~~~~~~~~~~---~-~---- 234 (638)
...++. ++..|-...+.-.. .++. +.....+.... ..+.. +... + -
T Consensus 167 LR~npd-sp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~-k~~e~~~~~~~d~~ 244 (568)
T KOG2396|consen 167 LRFNPD-SPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAV-KSVELSVAEKFDFL 244 (568)
T ss_pred hhcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcch-hhcchHHHHHHHHH
Confidence 877433 44444433322110 1111 00111110000 00000 0000 0 0
Q ss_pred ----HHHHHHHHccC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006624 235 ----SALISAFGKLG-------RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYT 303 (638)
Q Consensus 235 ----~~l~~~~~~~g-------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 303 (638)
...++. .+.+ ..+.|.+.++-.... +...+...-....-.-+-+....+|++..+. .|+...
T Consensus 245 kel~k~i~d~-~~~~~~~np~~~~~laqr~l~i~~~t----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm 317 (568)
T KOG2396|consen 245 KELQKNIIDD-LQSKAPDNPLLWDDLAQRELEILSQT----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESM 317 (568)
T ss_pred HHHHHHHHHH-HhccCCCCCccHHHHHHHHHHHHHHh----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHH
Confidence 001111 1111 124455555544432 1112222222222222233344666666543 335555
Q ss_pred HHHHHHHHHhc------CCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCH-HHHHHHHHHHHHCCCCCCHhHH
Q 006624 304 YTELIKGLGRA------GRVEDAYGLFMNMLKEG-CKP-DIVLINNLINVLGRAGRL-EDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 304 ~~~li~~~~~~------g~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
|+..|..|... ..+..-..+|+.....+ ..+ ....|..+.-.++..+.. +.|..+..+. ..-+...|
T Consensus 318 ~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~~ 393 (568)
T KOG2396|consen 318 WECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKMW 393 (568)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHHH
Confidence 55555554432 23444555666555532 222 234555555555555443 3334443333 23455566
Q ss_pred HHHHHHHHhcCC-hHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHH--HHHHHHHHHhCCCCCCHh-hHHHHH
Q 006624 375 NTVIKSLFESKA-PASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR-VEK--AHLLLEEMEEKGFPPCPA-AYCSLI 449 (638)
Q Consensus 375 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~--A~~~~~~~~~~~~~~~~~-~~~~li 449 (638)
..-+........ ..-....+|......-..+-...|+... .++ ... -..++......+ .++.. .-+.++
T Consensus 394 ~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l 467 (568)
T KOG2396|consen 394 QLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYL 467 (568)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHH
Confidence 555555543322 2222233344444433333344444433 122 111 122333444444 34444 445677
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHc
Q 006624 450 NGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFG---KCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA 525 (638)
Q Consensus 450 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~ 525 (638)
+.+.+.|-.++|...+..+... .+++...|..+|..-. .+| +..+..+++.|... | .|+..|...+.--...
T Consensus 468 ~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 468 DWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHHHHhhccC
Confidence 8888888999999999988886 6778888888886532 334 77888888888654 5 6777787777666688
Q ss_pred CCHHHHHHHHHHHHHC
Q 006624 526 GMIDDAYSLLRRMEED 541 (638)
Q Consensus 526 g~~~~A~~~~~~~~~~ 541 (638)
|..+.+-.++.++.+.
T Consensus 544 g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMKT 559 (568)
T ss_pred CCcccccHHHHHHHHh
Confidence 9888888888777653
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.68 E-value=6.7 Score=34.59 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
|.-+.+||-+.--+...|+++.|.+.|+...+.++.-+ .+...-.-++.-.|++.-|.+-|.+.-+.++
T Consensus 96 P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~-Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 96 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-HHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 34467888888888889999999999999888755423 3333333444557889999888888877664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=9.5 Score=36.16 Aligned_cols=203 Identities=13% Similarity=0.053 Sum_probs=130.6
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH-----HHHHHHHHHHHHcCCCCc
Q 006624 406 SPFTYSILIDGFCKTNRV----EKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY-----EAANELFLELKEYCGCSS 476 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-----~~A~~~~~~~~~~~~~~~ 476 (638)
|...-...+.++.+.|+. +++...+..+... .++..+....+.++...+.. ..+...+..... .++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCC
Confidence 444445556666666653 4567777766443 45666666666666655421 223333333332 246
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-MIDDAYSLLRRMEEDGCVPDINSHNIILN 555 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 555 (638)
..+-...+.++.+.++ ++|...+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .+|..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 6677777888888877 5677777666653 45555555555665543 24567777777775 357777778888
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhc
Q 006624 556 GLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGK 629 (638)
Q Consensus 556 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 629 (638)
++.+.|+. .|...+-+..+.+ + .....+.++...|+. +|...+.++.+. .||..+-...+++|.+
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 99998884 6777766666543 2 234677889999995 788888888853 5688888888888764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.57 E-value=2.1 Score=37.29 Aligned_cols=97 Identities=18% Similarity=0.118 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHH--H
Q 006624 513 YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP-DAVSYN--T 587 (638)
Q Consensus 513 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~--~ 587 (638)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.++......|++..+.....+....--.+ |...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4577889999999999999999999998754444 4456778888899999999999998887531111 221111 1
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHH
Q 006624 588 ILG--CLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 588 l~~--~~~~~g~~~~A~~~~~~m~ 609 (638)
... .+...|++.+|.+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2356789999988887665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=92.54 E-value=1.1 Score=33.62 Aligned_cols=63 Identities=16% Similarity=0.234 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 564 KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 564 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
=++.+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +..+..+|..+++-+
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 356666666666677888888888888888888888888888877643 222445676666543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.51 E-value=16 Score=38.61 Aligned_cols=100 Identities=14% Similarity=0.080 Sum_probs=63.5
Q ss_pred CCCCCCHHHHHH-----HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh--HHHHHHHHHHHHCC
Q 006624 189 RKCKPTANTYNS-----MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD--ISAIRLFDEMKENG 261 (638)
Q Consensus 189 ~~~~~~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~g 261 (638)
.|+..+..-|.. +++-+...+.+..|+++-..+..... .....|..+...+.+..+. +++++.+++=....
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 356666665554 45667778889999998887754221 2256777777777766332 23333333322221
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
. -....|..++.-...+|+.+-|..+++.
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~ 532 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLEL 532 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhc
Confidence 2 3456788888888889999999888754
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.36 E-value=13 Score=37.32 Aligned_cols=182 Identities=9% Similarity=0.056 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.|-....+++..++.+..+.-...+..+|+. ...+-..+..++..|... ..+.-..+++++.+..+. |++.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~--~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLE--YGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHH--hcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 34556777889999999999999999999988 456778888999999888 567788889988887554 55555556
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCC-CCH---HHHHHHHHHHHccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCF-PDT---VTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~li~~~ 276 (638)
...|-+ ++.+.+...|.++...-... .+. ..|..+.... -.+.+.-+++...+.. .|...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 555544 88888888888887654310 111 2344333321 2455666666666553 24344455666666778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGL 311 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 311 (638)
....++.+|++++..+.+.+-. |..+-..++.-+
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHH
Confidence 8888999999999988877543 555555555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.24 E-value=18 Score=38.39 Aligned_cols=147 Identities=18% Similarity=0.182 Sum_probs=83.3
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHH--HH-HHccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHhcC
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALI--SA-FGKLGRDISAIRLFDEMKE-------NGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~--~~-~~~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g 280 (638)
...|.++++...+.+. ........++ .+ +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~--~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH--SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 4567777777777654 2222222222 22 3455677888888877766 44 3345566666666632
Q ss_pred -----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----ccC
Q 006624 281 -----EVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG----RAG 350 (638)
Q Consensus 281 -----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~g 350 (638)
+.+.|..++.+.-+.|.+ +...+-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 567788888777777643 44443333322222 24567788888887777653 22222222222 234
Q ss_pred CHHHHHHHHHHHHHCC
Q 006624 351 RLEDALKLFNKMEALQ 366 (638)
Q Consensus 351 ~~~~A~~~~~~~~~~~ 366 (638)
+...|..++.+..+.|
T Consensus 379 ~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG 394 (552)
T ss_pred CHHHHHHHHHHHHHcc
Confidence 5677777777776655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.35 Score=28.93 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
+|+.|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35566666666666666666666643
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.39 Score=28.75 Aligned_cols=26 Identities=15% Similarity=0.213 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+|..|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888854
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.90 E-value=21 Score=38.49 Aligned_cols=165 Identities=14% Similarity=0.144 Sum_probs=71.8
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHH
Q 006624 268 IYTTLVSIYF-KLGEVEKALGLVQEMKGKGCALTVY-----TYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPDIV 337 (638)
Q Consensus 268 ~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~ 337 (638)
++-.++..+. ...+++.|+..+++.....-.++.. ....++..+.+.+... |...+++.++. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4444555544 4555666666666543322111111 1223345555555444 66666655542 1112222
Q ss_pred HHHHH-HHHHHccCCHHHHHHHHHHHHHCC---CCCCHhHHHHHHHHHHhc--CChHHHHHHHHHHHHhC---------C
Q 006624 338 LINNL-INVLGRAGRLEDALKLFNKMEALQ---CKPNVVTYNTVIKSLFES--KAPASEASAWFEKMKAN---------G 402 (638)
Q Consensus 338 ~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~---------~ 402 (638)
.|.-+ +..+...++...|.+.++.+.... ..|....+-.++.+.... +...+. .+..+.+... .
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~-~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV-LELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHhhcccCCCC
Confidence 33333 222222356666666666654332 223333333333333322 222222 2222332111 1
Q ss_pred CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 006624 403 VLPSPFTYSILIDGFC--KTNRVEKAHLLLEEME 434 (638)
Q Consensus 403 ~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~ 434 (638)
..|-...|..+++.++ ..|+++.+...++++.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1234455666655443 5666667666666553
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.39 E-value=24 Score=38.28 Aligned_cols=226 Identities=16% Similarity=0.105 Sum_probs=123.3
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAK-------IYTTLVS-IYFKLGEVEKALGLVQEMKGK----GCALTVYTYTELIK 309 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~-------~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~~~~~~~~~li~ 309 (638)
....++++|..+++++...-..|+.. .++.|-. .....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35678999999988876542222221 2333322 234578899999888877654 22345667777788
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----HHHHHccCCHH--HHHHHHHHHHHC--CCC----CCHhHHHH
Q 006624 310 GLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNL-----INVLGRAGRLE--DALKLFNKMEAL--QCK----PNVVTYNT 376 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~~--~A~~~~~~~~~~--~~~----p~~~~~~~ 376 (638)
+..-.|++++|..+..+..+..-.-++..+... ...+...|+.. +....|...... .-+ +-......
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 888899999999888777664333344333322 23455667333 333333333221 111 22334445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC----CHhhHHHHHH
Q 006624 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTY--SILIDGFCKTNRVEKAHLLLEEMEEKGFPP----CPAAYCSLIN 450 (638)
Q Consensus 377 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~~~li~ 450 (638)
++.++.+......++...++.-......|-...+ ..|+.+....|+.++|...+.++......+ +..+-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 5555555322222223322222222222222222 367788889999999999998887543222 2222222222
Q ss_pred --HHHccCCHHHHHHHHHH
Q 006624 451 --GYGKAKRYEAANELFLE 467 (638)
Q Consensus 451 --~~~~~g~~~~A~~~~~~ 467 (638)
.....|+.+.+.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 23346777777766655
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.34 E-value=8.4 Score=32.87 Aligned_cols=97 Identities=18% Similarity=0.342 Sum_probs=44.4
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC
Q 006624 185 QIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP 264 (638)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 264 (638)
.+.+.++.|+...|..+++.+.+.|++.....++.- +.. +|.......+-.+. +....+.++=-+|.++
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~Vi-~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR---- 87 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----HVI-PDSKPLACQLLSLG--NQYPPAYQLGLDMLKR---- 87 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----ccc-CCcHHHHHHHHHhH--ccChHHHHHHHHHHHH----
Confidence 334445556666666666666666665544333322 222 33333333222221 1223333333333332
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 265 TAKIYTTLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (638)
=...+..+++.+...|++-+|+++.+..
T Consensus 88 L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0113344555666666666666666554
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.27 Score=28.95 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHH
Q 006624 194 TANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A 214 (638)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 444555555555555555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.88 E-value=10 Score=33.00 Aligned_cols=91 Identities=11% Similarity=0.002 Sum_probs=43.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
...+..+|++++|..-++.....-.. ....+-..|.+...+.|++++|+..++.....+ -.......-.+.+...
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~---w~~~~~elrGDill~k 172 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES---WAAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc---HHHHHHHHhhhHHHHc
Confidence 34455566666666666655432100 011112223455555666666666655544322 1222233334555556
Q ss_pred CChHHHHHHHHHHHHC
Q 006624 245 GRDISAIRLFDEMKEN 260 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~ 260 (638)
|+-++|+.-|++..+.
T Consensus 173 g~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 173 GDKQEARAAYEKALES 188 (207)
T ss_pred CchHHHHHHHHHHHHc
Confidence 6666666666655554
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.75 E-value=33 Score=38.63 Aligned_cols=81 Identities=12% Similarity=0.109 Sum_probs=49.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006624 413 LIDGFCKTNRVEKAHLLLEEMEEKGFPPCPA--AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC 490 (638)
Q Consensus 413 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 490 (638)
.+.+|...|+|.+|+.+..++... .+.. +-..|+.-+...++.-+|-++..+.... ....+..||+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 355666667777776666655421 1221 1245666777778877777777766552 33445566777
Q ss_pred CCHHHHHHHHHHHH
Q 006624 491 GRLSDAVDLFNEMK 504 (638)
Q Consensus 491 g~~~~A~~~~~~m~ 504 (638)
..+++|+++-....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 77788777665543
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.48 E-value=31 Score=38.12 Aligned_cols=28 Identities=21% Similarity=0.293 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRS 154 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (638)
-|..|+..|...|+.++|.++|.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4778888888899999999888888763
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.37 E-value=8 Score=39.65 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
....+.++..+.++|..++|+++ .+|..- -.....+.|+++.|.++..+. .+..-|..|..
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~~la~e~-------~s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAFDLAVEA-------NSEVKWRQLGD 674 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHHHHHHhh-------cchHHHHHHHH
Confidence 34566777778888887777765 222221 233445678888887776654 45666888888
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
+..+.|++..|.+.|.+... |..|+-.+...|+-+....+-....+.|.. | ...-+|...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHH
Confidence 88888888888888876654 345666667777776666666666555532 2 22234566788888
Q ss_pred HHHHHHHH
Q 006624 320 AYGLFMNM 327 (638)
Q Consensus 320 A~~~~~~~ 327 (638)
+.+++..-
T Consensus 740 C~~lLi~t 747 (794)
T KOG0276|consen 740 CLELLIST 747 (794)
T ss_pred HHHHHHhc
Confidence 77776543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=21 Score=35.58 Aligned_cols=122 Identities=9% Similarity=-0.019 Sum_probs=68.3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
...|+...|-+-+.+.++. .+-++.........+...|.++.+...+...... +.....+...+++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 3456665555544444443 1222222222334456667777777776555433 2224556667777777777777777
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 216 ELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
..-+.|+.... .+...........-..|-++++.-.++++...+
T Consensus 378 s~a~~~l~~ei--e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEI--EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhcccc--CChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777776554 344433333334445566777777777766543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.74 E-value=32 Score=36.97 Aligned_cols=92 Identities=20% Similarity=0.252 Sum_probs=45.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHhcCC-----------HHHHHHHHHHhhhCC-----CCC-C
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILN-GLAKSGG-----------PKRAMEIFTKMQHSE-----IKP-D 581 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~-~~~~~g~-----------~~~A~~~~~~m~~~~-----~~p-~ 581 (638)
.-+...|++++|+.+|+-+.+. ..-....|.++. ....... ...|..+.+.....+ +.+ +
T Consensus 422 ~~~e~~g~~~dAi~Ly~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~ 499 (613)
T PF04097_consen 422 REAEERGRFEDAILLYHLAEEY--DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVSRKN 499 (613)
T ss_dssp HHHHHCT-HHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHH
T ss_pred HHHHHCCCHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhccHHH
Confidence 4456778888888888766531 001122232222 2222222 344555555554321 111 2
Q ss_pred HHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006624 582 AVSYNTILG-----CLSRAGMFEEAARLMKDMNAKGFEYD 616 (638)
Q Consensus 582 ~~~~~~l~~-----~~~~~g~~~~A~~~~~~m~~~~~~p~ 616 (638)
..|+..|++ .+.+.|++++|++.++++ ++.|.
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L---~liP~ 536 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEKL---DLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT---T-S-S
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCC
Confidence 345555543 347899999999888887 56664
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.34 E-value=12 Score=31.52 Aligned_cols=16 Identities=50% Similarity=0.632 Sum_probs=6.8
Q ss_pred HcCCHHHHHHHHHHHH
Q 006624 524 RAGMIDDAYSLLRRME 539 (638)
Q Consensus 524 ~~g~~~~A~~~~~~~~ 539 (638)
..|++.+|..+|+++.
T Consensus 56 ~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 56 VRGDWDDALRLLRELE 71 (160)
T ss_pred HhCCHHHHHHHHHHHh
Confidence 3444444444444433
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.15 E-value=15 Score=32.47 Aligned_cols=175 Identities=15% Similarity=0.075 Sum_probs=100.4
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 006624 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDE 256 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 256 (638)
+-|.-=|.+.....+. -+..||.+.--+...|+++.|.+.|+...+.++. ...+...-.-++.--|++.-|.+-|-.
T Consensus 82 ~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~--y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 82 ALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--YNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc--chHHHhccceeeeecCchHhhHHHHHH
Confidence 3333334444443222 4577999999999999999999999999987652 222222222234456899999888877
Q ss_pred HHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006624 257 MKENGL-QPTAKIYTTLVSIYFKLGEVEKALGLV-QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 257 m~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~~~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
..+... .|-...|-.++. ..-++.+|..-+ +...+. |...|...|-.+. .|++.+ ..+++++... ...
T Consensus 159 fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~-a~~ 228 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLMERLKAD-ATD 228 (297)
T ss_pred HHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHHHHHHhh-ccc
Confidence 766531 122223333332 344566665444 334333 4333433332221 122211 1233333332 111
Q ss_pred C-------HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 335 D-------IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 335 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+ +.||--+...+...|+.++|..+|+-...
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1 35778888899999999999999998866
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.00 E-value=1.1 Score=26.08 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+|..+...|...|++++|++.|++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356666666666777777777776666644
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.90 E-value=5.3 Score=34.72 Aligned_cols=93 Identities=13% Similarity=0.010 Sum_probs=62.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGP-----SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+-+.++|++.+|..-|.+.+.. |++.+ ..|..-..++.+.+.++.|+.-..+.++.++. ...+.-.-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHH
Confidence 44567788888888888888775 34332 23444556677888888888888777776433 2333334456677
Q ss_pred hcCCHhHHHHHHHHHHhCCC
Q 006624 207 QEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~ 226 (638)
+...+++|++-|.++....+
T Consensus 180 k~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDP 199 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCc
Confidence 77788888888888877654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.87 E-value=5.7 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.289 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-+..+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +.+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 66667777777788889999999999999999999999999888765 2222225665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.86 E-value=14 Score=31.58 Aligned_cols=101 Identities=15% Similarity=0.247 Sum_probs=58.4
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
.++.+.+...+++|+...+..+++.+.+.|++..... +...++-+|.......+-.+. +....+.++--+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 5566777778888888888888888888888665444 344444444444433332222 1223333333333332
Q ss_pred CCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 472 CGCSSAR-VYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 472 ~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
.. .+..+++.+...|++-+|+++.+..
T Consensus 88 -----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 11 3455666677777777777777664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.83 E-value=13 Score=31.30 Aligned_cols=19 Identities=16% Similarity=0.298 Sum_probs=8.9
Q ss_pred HHhcCCHhHHHHHHHHHHh
Q 006624 205 LMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~ 223 (638)
+++.|++.+|+.+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444444455444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.52 E-value=0.69 Score=27.22 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHH
Q 006624 229 PDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
.+...|+.+...+...|++++|+
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.43 E-value=4 Score=30.69 Aligned_cols=61 Identities=15% Similarity=0.273 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
-++.+-+..+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +..+...|..++.
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 366777777888888999999999999999999999999999988754 2224456665543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.83 E-value=23 Score=32.95 Aligned_cols=58 Identities=16% Similarity=0.151 Sum_probs=35.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEM 292 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 292 (638)
++...+.|..+|.+.+|.++.+...... +.+...+-.|+..+...|+--.+.+-++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3444556666677777777666666543 345666666667777777655555555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.60 E-value=18 Score=31.50 Aligned_cols=87 Identities=11% Similarity=0.102 Sum_probs=40.0
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH-----HHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS-----ALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
..+...|++++|...++..+.. |....+. .|.+.....|.+|+|+..++...+.+. .......-.+.+.
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill 170 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILL 170 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHH
Confidence 4455666666666666665542 2222222 233344455555555555544443221 1112222334445
Q ss_pred hcCCHHHHHHHHHHHHhC
Q 006624 278 KLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 278 ~~g~~~~A~~~~~~m~~~ 295 (638)
..|+-++|..-|++.++.
T Consensus 171 ~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 171 AKGDKQEARAAYEKALES 188 (207)
T ss_pred HcCchHHHHHHHHHHHHc
Confidence 555555555555554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.51 E-value=31 Score=34.02 Aligned_cols=66 Identities=20% Similarity=0.181 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
....+|..++..+.+.|.++.|...+..+...+... +......-++.+-..|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678888889999999999999888887754221 334444455667778888999988888877
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.49 E-value=2.8 Score=39.06 Aligned_cols=106 Identities=13% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCH
Q 006624 119 RNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRST---CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTA 195 (638)
Q Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 195 (638)
+|.++++.+-...+..-....+++++...+-.+.... ..++. +-..+++.+.+ -++++++.+...=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence 3555665555566655566667777777666554421 01111 11223333333 3566888888777888888888
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+++.+++.+.+.+++.+|..+.-.|.....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe~ 166 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQEA 166 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 8888888888888888888887777766544
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.45 E-value=9.9 Score=39.02 Aligned_cols=132 Identities=14% Similarity=0.130 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.-+.++..+-++|..++|++ ..+|+.-.. ....+.|+++.|.++..+.. +..-|..|.++..
T Consensus 616 ~rt~va~Fle~~g~~e~AL~---------~s~D~d~rF---elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al 677 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALE---------LSTDPDQRF---ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAAL 677 (794)
T ss_pred hhhhHHhHhhhccchHhhhh---------cCCChhhhh---hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHh
Confidence 45556666666776666654 333433222 34567899999998876643 6778999999999
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 286 (638)
+.|++..|.+.|..... |..|+-.+...|+-+.-..+-....+.|. .|.-..+|...|+++++.
T Consensus 678 ~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 678 SAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHH
Confidence 99999999999988755 45566677777877655555555555552 234445677899999999
Q ss_pred HHHHHH
Q 006624 287 GLVQEM 292 (638)
Q Consensus 287 ~~~~~m 292 (638)
+++.+-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 888654
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.43 E-value=1.1 Score=26.21 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
+|..+..+|...|++++|+..+++.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al 28 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRAL 28 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 45555566666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.27 E-value=1.7 Score=25.23 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|..+...+.+.|++++|++.|++..+..
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45556666666677777777666666544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.20 E-value=16 Score=30.32 Aligned_cols=18 Identities=17% Similarity=0.506 Sum_probs=7.7
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 006624 206 MQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~ 223 (638)
+..|++++|+.+|+++..
T Consensus 55 i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 55 IARGNYDEAARILRELLS 72 (153)
T ss_pred HHcCCHHHHHHHHHhhhc
Confidence 334444444444444433
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.10 E-value=0.29 Score=41.03 Aligned_cols=129 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGG 562 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 562 (638)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555556666666666666665543445566666666666666656666655511 11112234555556666
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCc
Q 006624 563 PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDED 633 (638)
Q Consensus 563 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 633 (638)
+++|.-++.++-... ..+..+...++++.|.+++.+ .++...|..+++.|...++.
T Consensus 86 ~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 86 YEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 666666555543210 001112233444444433322 34577888888888776654
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.98 E-value=1.2 Score=25.95 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=15.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 584 SYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.|..+..++.+.|++++|.+.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455556666666666666666666553
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.80 E-value=2.1 Score=40.28 Aligned_cols=54 Identities=11% Similarity=0.061 Sum_probs=31.1
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKP-TANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
+-|.++|++++|+..|...... .| |++++..-..+|.+..+|..|..-.+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4455666666666666655544 22 556666666666666666655555555444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.43 E-value=3.3 Score=38.64 Aligned_cols=100 Identities=14% Similarity=0.143 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+.+-..++..--...+++.+...+-+++....+ .|+ .+-..+++.+.+ -+.++++.++..=+..|+-||..+++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-ccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 3333444444444455566666666665543111 011 111222333322 245567777777677777778888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+++.+.+.+++.+|..+.-.|...
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888877777777666554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.18 E-value=17 Score=31.32 Aligned_cols=57 Identities=18% Similarity=0.306 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCC-----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 196 NTYNSMILMLMQEGY-----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.++..+..+|...+. +++|.+.|++..... |+...|+.-+.... +|-+++.++.+.+
T Consensus 70 dAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~---P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 70 DALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDED---PNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcC---CCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 455555555544322 445555555555543 56666665555442 2555555555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.00 E-value=30 Score=32.31 Aligned_cols=71 Identities=11% Similarity=0.175 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHhhHH
Q 006624 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA-----KGFEYDQITYS 621 (638)
Q Consensus 550 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 621 (638)
++.....|..+|.+.+|.++.++....+ +.+...|..++..+...||--+|.+.++++.+ .|+..|..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3445567778888888888888877643 23566677788888888887777777766643 36666665543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.87 E-value=42 Score=33.95 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=69.8
Q ss_pred CCCHhhH-HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHhhh-CCCCCCHHH
Q 006624 509 KPDVYTY-NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA--KSGGPKRAMEIFTKMQH-SEIKPDAVS 584 (638)
Q Consensus 509 ~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~-~~~~p~~~~ 584 (638)
.|+..|+ +.++..+.+.|-..+|...+..+... .+|+...|..++..-. ..-+..-+..+++.|.. .| .|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHH
Confidence 5666665 45677777888889999999998886 4567777777765422 12237778888888876 45 56777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 585 YNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|-..+.-=...|..+.+-.++.+..+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77776666678888887777666554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.82 E-value=12 Score=32.79 Aligned_cols=73 Identities=21% Similarity=0.096 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHccCChHHH
Q 006624 177 NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC--FPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 177 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
+.|.+.|-++...+.--++.....+...|. ..+.++++.++.+.++.... .+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 456666666655544434444444444443 55566666666665543211 25566666666666666666655
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.61 E-value=2.2 Score=26.19 Aligned_cols=28 Identities=25% Similarity=0.356 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+++.+...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4556666666666666666666666543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.51 E-value=2.2 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 583 VSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+++.+...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888887754
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.93 E-value=25 Score=30.97 Aligned_cols=73 Identities=5% Similarity=0.042 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR---KCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
++|.+.|-.+...+.--++.....++..|. ..+.++|+.++.+..+. +-.+|+..+.+|+..+.+.|+++.|.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 567777777777766667777777777776 45788888888877654 33678888999999999999888875
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.67 E-value=28 Score=34.94 Aligned_cols=38 Identities=5% Similarity=-0.133 Sum_probs=25.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
-.|...|+.-.|.+.|.+.... +..++..|-.|..+|.
T Consensus 343 ~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 343 LLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred HHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 3456677777777777777664 3456677777776664
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.39 E-value=60 Score=34.46 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=73.3
Q ss_pred hCCCHHHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHhcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 172 KAKMVNKALSIFYQIKS-------RKCKPTANTYNSMILMLMQEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+.+.|...|....+ .| .....+-+..+|.+.. +.+.|+.+|......+. |+...+-..+.
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~ 335 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLY 335 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 44577777777776655 33 2334455555555532 45557777776666554 55544433333
Q ss_pred HHHc-cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 240 AFGK-LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF----KLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 240 ~~~~-~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.... ..+...|.++|....+.|. ...+-.+..+|. ...+.+.|..++.+.-+.|. |....-...+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-
Confidence 3222 2345666666666666652 222222222222 12345666666666666552 222222222222323
Q ss_pred CCHHHHHHHHHHHHHcC
Q 006624 315 GRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~ 331 (638)
++++.+.-.+..+.+.|
T Consensus 411 ~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELG 427 (552)
T ss_pred ccccHHHHHHHHHHHhh
Confidence 55555555555444443
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.28 E-value=46 Score=35.51 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCC----------------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006624 106 NVKIQFFKWAGRRR----------------NFEHNSTTYMALIRCLDETRMIGVMWKSIQD 150 (638)
Q Consensus 106 ~~a~~~f~~~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (638)
...-.+++|+-+.. ...+++..|+ .+..+.-.|+++.|..++..
T Consensus 114 ~v~~~Ll~WvNr~~~~~~~~~~~~vl~~~~p~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 114 PVPEQLLDWVNRFHFPPSEELAEEVLSSEPPYEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHHHHHHHHTTS--SHHHHHTTSCSS-HSCSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred chHHHHHHHHHHhCCCCchhHHHHHhccCCCCccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 45677888883222 2334578887 67788888999999998853
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.76 E-value=19 Score=31.51 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=12.8
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
..-+.++|++++|..-|...+..
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh
Confidence 34455556666666665555554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.32 E-value=70 Score=34.39 Aligned_cols=169 Identities=14% Similarity=0.186 Sum_probs=94.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCC---CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKP---TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
=++.+.+.+.+++|+..-+..... .| -...+..+|..+.-.|++++|-...-.|.. .+..-|...+..+.
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g-----n~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG-----NNAAEWELWVFKFA 434 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc-----chHHHHHHHHHHhc
Confidence 356778888888888877665543 23 234566778888888888888888888766 45666777777776
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..+.......+ +.......+...|..++..+.. . .-..+++..... +...|..+.-.-+-.-
T Consensus 435 e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~---~~~~F~e~i~~W----p~~Lys~l~iisa~~~------- 496 (846)
T KOG2066|consen 435 ELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-S---DVKGFLELIKEW----PGHLYSVLTIISATEP------- 496 (846)
T ss_pred cccccchhhcc---CCCCCcccCchHHHHHHHHHHH-H---HHHHHHHHHHhC----ChhhhhhhHHHhhcch-------
Confidence 66655433222 2222122356677777776665 1 222222222222 3333333221111111
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+..+. -. +...-..|+..|...+++..|..++-...+
T Consensus 497 ---q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 497 ---QIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred ---HHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11111 11 122223377888888888888888776643
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=82.23 E-value=11 Score=30.05 Aligned_cols=61 Identities=13% Similarity=0.237 Sum_probs=42.7
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 565 RAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEA 626 (638)
Q Consensus 565 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 626 (638)
+..+-++.+....+.|++.....-+++|.+.+|+..|.++|+-.+.+ +.+....|..+++-
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~e 127 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVKE 127 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHHH
Confidence 44455556666677888888888888888888888888888877754 33444456666654
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.14 E-value=10 Score=33.55 Aligned_cols=56 Identities=13% Similarity=0.055 Sum_probs=30.0
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.+..+.+.++..+|+...++-++..+ .|......++..+|-.|++++|..-++-.-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 34445555556666655555555443 344455555555555555555555444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.57 E-value=4.6 Score=38.11 Aligned_cols=92 Identities=8% Similarity=-0.126 Sum_probs=65.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
.+-|.++|.|++|+++|...+... +.++.++..-..+|.+...+..|..-.+.....+ ..-..+|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 456788999999999998877632 3488888888899999999988887776665542 11233455555555556777
Q ss_pred hHHHHHHHHHHhCC
Q 006624 212 EKIHELYNEMCNEG 225 (638)
Q Consensus 212 ~~A~~~~~~~~~~~ 225 (638)
.+|.+-++..+...
T Consensus 182 ~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 182 MEAKKDCETVLALE 195 (536)
T ss_pred HHHHHhHHHHHhhC
Confidence 77777777777654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=81.15 E-value=2.9 Score=23.93 Aligned_cols=26 Identities=12% Similarity=0.238 Sum_probs=14.6
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+..++.+.|++++|.+.|+++++..
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 34455555566666666666655543
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.89 E-value=12 Score=33.07 Aligned_cols=76 Identities=16% Similarity=0.045 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHH
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILM 204 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~ 204 (638)
.+.-++.+.+.+..++++...++-++.. +.+...-..++..++-.|++++|..-++-..+.. ..+....|..+|++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3455677778888888888888777753 5566667777888888888888887777665542 23345566666654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.89 E-value=17 Score=31.31 Aligned_cols=76 Identities=18% Similarity=0.207 Sum_probs=39.5
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR-----------DISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
+++|+.-|++.+..+| ....++..+..++...+. +++|.+.|++..+. .|+..+|+.-+....
T Consensus 51 iedAisK~eeAL~I~P--~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~-- 124 (186)
T PF06552_consen 51 IEDAISKFEEALKINP--NKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA-- 124 (186)
T ss_dssp HHHHHHHHHHHHHH-T--T-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH--
Confidence 4556666666766664 344666666666664432 34444444444443 566667766665543
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006624 280 GEVEKALGLVQEMKGKG 296 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~ 296 (638)
+|-++..++.+.+
T Consensus 125 ----kap~lh~e~~~~~ 137 (186)
T PF06552_consen 125 ----KAPELHMEIHKQG 137 (186)
T ss_dssp ----THHHHHHHHHHSS
T ss_pred ----hhHHHHHHHHHHH
Confidence 3445555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.69 E-value=23 Score=27.00 Aligned_cols=78 Identities=18% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKD 607 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (638)
.++|..+-+-+...+.. ....-.+-+..+...|+|++|..+.+.+ ..||...|.++. -.+.|..+++...+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHH
Confidence 34555554444443211 1222222334566777777777766655 357777776653 3566777766666666
Q ss_pred HHhCC
Q 006624 608 MNAKG 612 (638)
Q Consensus 608 m~~~~ 612 (638)
|...|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66555
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=80.44 E-value=3.3 Score=26.10 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 006624 553 ILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 553 l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
+..+|...|+.+.|.+++++..
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHH
Confidence 3444445555555555554444
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 96.4 bits (238), Expect = 9e-21
Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 4/159 (2%)
Query: 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534
A +++ L + + + A + + A+ L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 535 L---RRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGC 591
L + + ++ +N ++ G A+ G K + + ++ + + PD +SY L C
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 592 LSRAGMFEEAA-RLMKDMNAKGFEYDQITYSSILEAVGK 629
+ R R ++ M+ +G + + + +L +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 5e-19
Identities = 35/296 (11%), Positives = 77/296 (26%), Gaps = 46/296 (15%)
Query: 355 ALKLFNKMEALQCKP-------NVVTYNTVIKSLFESKAPASE------ASAWFEKMKAN 401
A L Q + + + K+L A + +
Sbjct: 27 AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQA 86
Query: 402 GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAA 461
P + L+ ++ + + + + A
Sbjct: 87 PESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLA 146
Query: 462 NELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSG 521
+ L + ++ R + YNA+M G
Sbjct: 147 HHLLVVHHG--------------------------------QRQKRKLLTLDMYNAVMLG 174
Query: 522 MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAME-IFTKMQHSEIKP 580
R G + +L +++ G PD+ S+ L + + +E +M +K
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234
Query: 581 DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRNP 636
A+ +L RA + + ++ + + S +L V D +
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSY 290
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.6 bits (215), Expect = 6e-18
Identities = 27/218 (12%), Positives = 57/218 (26%), Gaps = 5/218 (2%)
Query: 229 PDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL 288
P + L+ + + L + ++ A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 289 VQEMKG---KGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345
+ G K LT+ Y ++ G R G ++ + + G PD++ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 346 LGRAGR-LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404
+GR + + +M K + ++ S + L
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL-SEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP 442
P P S L+ + L ++
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.4 bits (212), Expect = 1e-17
Identities = 25/225 (11%), Positives = 68/225 (30%), Gaps = 3/225 (1%)
Query: 253 LFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLG 312
L D ++ P + L+ ++ + + K
Sbjct: 79 LEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCL 138
Query: 313 RAGRVEDAYGLFM---NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKP 369
++ A+ L + ++ + + N ++ R G ++ + + ++ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 370 NVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429
++++Y ++ + A E+M G+ ++L+ + ++ H +
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 430 LEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474
P P L+ + +L L LK
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 70.2 bits (170), Expect = 1e-12
Identities = 37/304 (12%), Positives = 89/304 (29%), Gaps = 15/304 (4%)
Query: 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVL 163
+ K+Q +G + L+ +M G + + S L
Sbjct: 43 RLKAKLQMPFQSGEFKALTRRLQVEPRLL----SKQMAGCLEDCTRQAPES---PWEEQL 95
Query: 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223
+ ++ ++ + Q + + + H L
Sbjct: 96 ARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHG 155
Query: 224 --EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281
+ Y+A++ + + G + + +K+ GL P Y + + +
Sbjct: 156 QRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215
Query: 282 VEKALG-LVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLIN 340
+ +++M +G L L+ RA ++ + + P V +
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
Query: 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNV-----VTYNTVIKSLFESKAPASEASAWF 395
L+ + KL ++ LQC + + S+ + P+ E
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHAR 335
Query: 396 EKMK 399
+ +K
Sbjct: 336 KTLK 339
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-11
Identities = 99/695 (14%), Positives = 206/695 (29%), Gaps = 237/695 (34%)
Query: 23 IKQTENEIVHMFQLSGPIDEMRNFPVSKKFARKDT--------SARKLDERFIRILKIFK 74
+ +I+ +F+ F F KD S ++D I+
Sbjct: 14 HQYQYKDILSVFE--------DAF--VDNFDCKDVQDMPKSILSKEEIDH----IIMS-- 57
Query: 75 WGPDAEKALEVL-------KMRVDHRLVHQVLNIDVEINVKIQFFKW------------A 115
DA L + + + V +VL I+ +K+ +
Sbjct: 58 --KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---------YKFLMSPIKTEQRQPS 106
Query: 116 GRRRNFE------HNST------------TYMALIRCLDETR---------MIGVMWKSI 148
R + +N Y+ L + L E R ++G
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG------ 160
Query: 149 QDMVRSTCVMGPSVL-SEIVNILG-KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206
G + + ++ + KM K IF+ + + C ++ M
Sbjct: 161 ---------SGKTWVALDVCLSYKVQCKMDFK---IFW-LNLKNCNSPET------VLEM 201
Query: 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA 266
+ +I + + + + S +L R + L + EN L
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIH-----SIQAEL-RRL----LKSKPYENCL---- 247
Query: 267 KIYTTLVSIYFKLGEVE-----KALGLVQEMKGKGC-------------ALTVYTYTELI 308
LV L V+ A L C L+ T T +
Sbjct: 248 -----LV-----LLNVQNAKAWNAFNL-------SCKILLTTRFKQVTDFLSAATTTHIS 290
Query: 309 KGLGRAGRVED-AYGLFMNMLKEGCKPD-----IVLINNL-INVLGRAGRLEDALKLFNK 361
D L + L C+P ++ N ++++ + D L ++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAE--SIRDGLATWDN 346
Query: 362 MEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP-----SPFTYSIL--- 413
+ + C T+I+S PA E F+++ V P S++
Sbjct: 347 WKHVNCD----KLTTIIESSLNVLEPA-EYRKMFDRL---SVFPPSAHIPTILLSLIWFD 398
Query: 414 ---------IDGFCKTNRVEKA--------HLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456
++ K + VEK + E++ K A + S+++ Y K
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK-LENEYALHRSIVDHYNIPK 457
Query: 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEM--------KKLRC 508
+++ + + L +Y Y+ + H + + LF + +K+R
Sbjct: 458 TFDSDDLIPPYLDQY-------FYSHIGHHLKNIEH-PERMTLFRMVFLDFRFLEQKIR- 508
Query: 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAME 568
D +NA +++ L + + + + ++N + + E
Sbjct: 509 -HDSTAWNA------SGSILNTLQQL--KFYKPYICDNDPKYERLVNAILDF--LPKIEE 557
Query: 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAAR 603
+++++ A+ +FEEA +
Sbjct: 558 NLICSKYTDLLRIALMAED-------EAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 6e-07
Identities = 64/449 (14%), Positives = 122/449 (27%), Gaps = 130/449 (28%)
Query: 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTT--L 272
H + E + D + S AF + + D K I + +
Sbjct: 5 HHMDFETGEHQYQYKDIL--SVFEDAFVD---NFDCKDVQDMPKS--------ILSKEEI 51
Query: 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332
I V L L + K V + E + Y M+ +K
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVE--------EVLRINYKFLMSPIKTEQ 102
Query: 333 K---PDIVLINNLINVLGRAG---------RLEDALKLFNKMEALQCKPNVVTY------ 374
+ + + L RL+ LKL + L+ NV+
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 375 NTVIKSLFESKAPASEA--SAWFEKMKANGVLPSPFTYSILIDGFCKTNR--VEKAHLLL 430
T + A + S + + F ++ C + +E LL
Sbjct: 163 KTWV---------ALDVCLSYKVQCKMDFKI----FWLNL---KNCNSPETVLEMLQKLL 206
Query: 431 EEMEEKGFPPCPAAYCSLINGYGKAK-RYEAANE---LFLELKEYCGCSSARVYAVMIKH 486
+++ + S + K R + L+ K Y C +++
Sbjct: 207 YQIDPN--------WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC-------LLV-- 249
Query: 487 FGKCGRLSD-----AVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541
L + A + FN L CK + T R + D S
Sbjct: 250 ------LLNVQNAKAWNAFN----LSCKILLTT---------RFKQVTDFLSAATTTH-- 288
Query: 542 GCVPDINSHNIILNGLAKSGGPKRAMEIFTK---MQHSEIKPDAVSYNTILGCLSRAGMF 598
I L+ + + P + K + ++ + ++ N LS +
Sbjct: 289 ----------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR--LS---II 333
Query: 599 EEAARLMKDMNAKGFEYDQITYSSILEAV 627
A ++D A + + + +
Sbjct: 334 ---AESIRDGLATWDNWKHVNCDKLTTII 359
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 45/384 (11%), Positives = 94/384 (24%), Gaps = 69/384 (17%)
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289
V ++ L + + + +GL P V ++AL V
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLC--QAHGLTPQ------QVVAIASHDGGKQALETV 122
Query: 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGR 348
Q L V A+GL P+ +V I +
Sbjct: 123 QR------LLPVLC---------------QAHGL---------TPEQVVAIASHDGGKQA 152
Query: 349 AGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP-S 406
++ L + + A P VV + + +A+G+ P
Sbjct: 153 LETVQALLPVLCQ--AHGLTPEQVVAIASNGGGKQALETVQ-RLLPVLC--QAHGLTPQQ 207
Query: 407 PFTYSILIDGFCKTNRVEKA-HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELF 465
+ G V++ +L + P A S G + + +
Sbjct: 208 VVAIASNGGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVL 265
Query: 466 ---LELK-EYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYNALMS 520
L + A + + + + P V +
Sbjct: 266 CQAHGLTPQQ-----VVAIASNSGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGG 318
Query: 521 GMVRAGMIDDAYSLLRR-MEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578
G + +L + P + + G +R + + + +
Sbjct: 319 GKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQRLLPVLCQAH--GL 373
Query: 579 KPD-AVSYNTILGCLSRAGMFEEA 601
P+ V+ + G +
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRL 397
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 39/322 (12%), Positives = 76/322 (23%), Gaps = 47/322 (14%)
Query: 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227
+ V L + Q + S +++ + +
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQ-VVAIASNGGGKQALETVQRLLPVLCQAHG---L 203
Query: 228 FPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL 286
P V ++ L + + + +GL P V G ++AL
Sbjct: 204 TPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQ------QVVAIASNGGGKQAL 255
Query: 287 GLVQEMKGKGCALTVYT--------YTELIKGLGRA----GRVEDAYGLFMNMLKEGCKP 334
VQ L V I V+ + P
Sbjct: 256 ETVQR------LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG--LTP 307
Query: 335 D-IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEAS 392
+V I + ++ L + + A P VV + +
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQ-RLL 364
Query: 393 AWFEKMKANGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEE-MEEKGFPPCPAAYCSLIN 450
+ A+G+ P + G V++ +L + P A S
Sbjct: 365 PVLCQ--AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT--PEQVVAIASHDG 420
Query: 451 GYGKAKRYEAANELF---LELK 469
G + + + L
Sbjct: 421 GKQALETVQRLLPVLCQAHGLT 442
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 27/226 (11%), Positives = 55/226 (24%), Gaps = 43/226 (19%)
Query: 168 NILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYN---EMCN 223
+ V + L + ++ P S +++ + +
Sbjct: 250 GGKQALETVQRLLPVL--CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 224 EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283
+ V ++ L + + + +GL P V +
Sbjct: 308 Q-----QVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQ------QVVAIASHDGGK 354
Query: 284 KALGLVQEMKGKGCALTVYT--------YTELIKGLGRA----GRVEDAYGLFMNMLKEG 331
+AL VQ L V I G V+ +
Sbjct: 355 QALETVQR------LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHG-- 406
Query: 332 CKPD-IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYN 375
P+ +V I + ++ L + + A P VV
Sbjct: 407 LTPEQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIA 450
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 31/202 (15%), Positives = 65/202 (32%), Gaps = 14/202 (6%)
Query: 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN---EMCNEGNCFPD 230
+ +AL I+ + T + + +Y+K E+ +
Sbjct: 162 YHILQALDIYQNHPLYSIR-TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220
Query: 231 T-VTYSALISAFGKLGRDISAIRLFDE----MKENGLQPTAKIYTTLVSIYFKLGEVEKA 285
++ + +++ + G D A+ F + +E K+ L K G+ +KA
Sbjct: 221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKA 280
Query: 286 LGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML----KEGCKPDIV-LIN 340
++E A + Y EL L + ++L K+ I
Sbjct: 281 FQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACAR 340
Query: 341 NLINVLGRAGRLEDALKLFNKM 362
+ V + E A + K+
Sbjct: 341 SAAAVFESSCHFEQAAAFYRKV 362
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 55.9 bits (135), Expect = 3e-08
Identities = 50/385 (12%), Positives = 106/385 (27%), Gaps = 50/385 (12%)
Query: 245 GRDISAIRLFD---EMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
G ++ + + Q A + +F +A+ Q A+ +
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQY------AIEL 54
Query: 302 Y-TYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDA 355
+ G +E L+ KPD + G DA
Sbjct: 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALE--IKPDHSKALLRRASANESLGNFTDA 112
Query: 356 LKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP-------- 407
+ + + + ++L + + ++ + + VLPS
Sbjct: 113 MFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172
Query: 408 -FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA-KRYEAANELF 465
F + + ++ + A+ LL + ++ + Y + K+ Y +
Sbjct: 173 IFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN 232
Query: 466 ---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522
L+E +A L DA L + + P +Y L +
Sbjct: 233 TVDDPLREN----AALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLALTL 286
Query: 523 VRAGMIDDAYSLLRRMEEDGCVPDINSHNI-ILNGLA----KSGGPKRAMEIFTKMQHSE 577
+ + ++ + +N K A E F K
Sbjct: 287 ADKENSQEFFKFFQKAVD------LNPEYPPTYYHRGQMYFILQDYKNAKEDFQKA--QS 338
Query: 578 IKPD-AVSYNTILGCLSRAGMFEEA 601
+ P+ Y + L + G F E+
Sbjct: 339 LNPENVYPYIQLACLLYKQGKFTES 363
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 44/286 (15%), Positives = 77/286 (26%), Gaps = 47/286 (16%)
Query: 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254
A + + L E N P +Y L + F
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESIN---LHPTPNSYIFLALTLADKENSQEFFKFF 299
Query: 255 DEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT-----VYTYTELI 308
+ + L P Y +YF L + + A Q+ A + VY Y +L
Sbjct: 300 QKAVD--LNPEYPPTYYHRGQMYFILQDYKNAKEDFQK------AQSLNPENVYPYIQLA 351
Query: 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQC 367
L + G+ ++ F + P + + +L G + A+K ++ A +
Sbjct: 352 CLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI--AKRL 407
Query: 368 KPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAH 427
+ + G S + A
Sbjct: 408 EEV-------------------QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI 448
Query: 428 LLLEE-MEEKGFPPCPAAYCSLINGYGKAKRYEAANELF---LELK 469
LL + E P A L + ++ + A ELF L
Sbjct: 449 KLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 54.1 bits (130), Expect = 6e-08
Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 27/213 (12%)
Query: 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN---EMCNE-GNCFP 229
+A I+ + ++ + ++ + YE + M
Sbjct: 164 DYARQAYEIYKEHEAYNIR-LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL 222
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDE----MKENGLQP-TAKIYTTLVSIYFKLGEVEK 284
T + + AI F +E+ + P + Y + I++KLG+++K
Sbjct: 223 MGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDK 282
Query: 285 ALGLVQEMKGKGCALTVYTYTE---------LIKGLGRAGRVEDAYGLFMNMLKE-GCKP 334
A + + +K L +G E+A F + L+
Sbjct: 283 AHEYHSK------GMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYA 336
Query: 335 DIVLI-NNLINVLGRAGRLEDALKLFNKMEALQ 366
D+ ++ + A F K+E ++
Sbjct: 337 DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.9 bits (121), Expect = 5e-07
Identities = 36/236 (15%), Positives = 64/236 (27%), Gaps = 14/236 (5%)
Query: 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKAL-GLVQEMKGK 295
L A+ + + LQ + + L +EM
Sbjct: 40 LYRAYLAQRKYGVVLDEIKPSSAPELQA----VRMFAEYLASHSRRDAIVAELDREMSRS 95
Query: 296 GCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDA 355
+ A + + + +L + RL+ A
Sbjct: 96 VDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD------SLECMAMTVQILLKLDRLDLA 149
Query: 356 LKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILID 415
K KM+ + T SL +A F++M A+ P+ +
Sbjct: 150 RKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAA 208
Query: 416 GFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKA-KRYEAANELFLELKE 470
R E A +L+E +K P +L+ K E N +LK+
Sbjct: 209 CHMAQGRWEAAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 1e-05
Identities = 30/204 (14%), Positives = 67/204 (32%), Gaps = 12/204 (5%)
Query: 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI-LMLMQEGYYEKIHELYNEMCNEGNC 227
L + ++ + SR T T+ M + + + ++ +
Sbjct: 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDS---- 129
Query: 228 FPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVEKAL 286
+ + KL R A + +M++ + ++ T VS+ +++ A
Sbjct: 130 ---LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAY 186
Query: 287 GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVL 346
+ QEM K C+ T+ GR E A G+ L + + NL+ +
Sbjct: 187 YIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HPETLINLVVLS 244
Query: 347 GRAGRLEDALKLFNKMEALQCKPN 370
G+ + + + +
Sbjct: 245 QHLGKPPEVTNRYLS-QLKDAHRS 267
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 77/413 (18%), Positives = 158/413 (38%), Gaps = 79/413 (19%)
Query: 205 LMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQ 263
Q G +E ++ + PD T L S + R + +
Sbjct: 9 EYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QN 63
Query: 264 PT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY-TYTELIKGLGRA----GRV 317
P A+ Y+ L ++Y + G++++A+ + AL + + + L A G +
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRH------ALRLKPDFIDGYINLAAALVAAGDM 117
Query: 318 EDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT 376
E A +++ L+ PD+ + ++L N+L GRLE+A + K A++ +PN +
Sbjct: 118 EGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKACYLK--AIETQPNFAVAWS 173
Query: 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436
+ +F ++ A FEK ++ +D
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEK-------------AVTLD--------------------- 199
Query: 437 GFPPCPAAYCSLINGYGKAKRYEAANELF---LELK-EYCGCSSARVYAVMIKHFGKCGR 492
P AY +L N +A+ ++ A + L L + A V+ + + + G
Sbjct: 200 --PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVYYEQGL 252
Query: 493 LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRR-MEEDGCVPD-INS 549
+ A+D + + + +P Y L + + G + +A + P +S
Sbjct: 253 IDLAIDTYR--RAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADS 307
Query: 550 HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEA 601
N + N + G + A+ ++ K E+ P+ A +++ + L + G +EA
Sbjct: 308 LNNLANIKREQGNIEEAVRLYRKA--LEVFPEFAAAHSNLASVLQQQGKLQEA 358
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 46/274 (16%), Positives = 101/274 (36%), Gaps = 34/274 (12%)
Query: 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK-MK 399
L + +AG E A + + + +P+ ++ S+ ++ + +K
Sbjct: 4 ELAHREYQAGDFEAAERHCMQ--LWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 400 ANGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEEMEE--KGFPPCPAAYCSLINGYGKAK 456
N P YS L + + + ++++A +E + P Y +L A
Sbjct: 62 QN---PLLAEAYSNLGNVYKERGQLQEA---IEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 457 RYEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-V 512
E A + + L+ V + + GRL +A + K + +P+
Sbjct: 116 DMEGAVQAYVSALQYNP----DLYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFA 169
Query: 513 YTYNALMSGMVRA--GMIDDAYSLLRR-MEEDGCVPD-INSHNIILNGLAKSGGPKRAME 568
++ L G V G I A + + D P+ ++++ + N L ++ RA+
Sbjct: 170 VAWSNL--GCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEARIFDRAVA 224
Query: 569 IFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEA 601
+ + + P+ AV + + G+ + A
Sbjct: 225 AYLR--ALSLSPNHAVVHGNLACVYYEQGLIDLA 256
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 46/419 (10%), Positives = 103/419 (24%), Gaps = 119/419 (28%)
Query: 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254
+ ++S + L E Y + + G G+ A+ F
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMADVEKHLELGK-------------KLLAAGQLADALSQF 49
Query: 255 DEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR 313
+ P Y +++ +G+ + AL T++I+
Sbjct: 50 HAAVD--GDPDNYIAYYRRATVFLAMGKSKAALP---------------DLTKVIQ---- 88
Query: 314 AGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQCKPNVV 372
K D ++L + G+L++A F K L+ P+
Sbjct: 89 ------------------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKK--VLKSNPS-- 126
Query: 373 TYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432
K + E + + A +
Sbjct: 127 --ENEEKEAQSQLIKSDEMQRLRSQALN----------------AFGSGDYTAA---IAF 165
Query: 433 MEE--KGFPPCPAAYCSLINGYGKAKRYEAANELF---LELKEYCGCSSARVYAVMIKHF 487
+++ + + K A +LK + + + +
Sbjct: 166 LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKN----DNTEAFYKISTLY 221
Query: 488 GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDI 547
+ G ++ + L+ D + ++ ++ V +
Sbjct: 222 YQLGDHELSLSEVR--ECLKLDQD----HK------------RCFAHYKQ------VKKL 257
Query: 548 NSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTIL-----GCLSRAGMFEEA 601
N L + G A + + + +P Y C S+ EA
Sbjct: 258 NKLIESAEELIRDGRYTDATSKYESV--MKTEPSIAEYTVRSKERICHCFSKDEKPVEA 314
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 33/269 (12%), Positives = 63/269 (23%), Gaps = 40/269 (14%)
Query: 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293
K G+ A F ++ + P+ S K E+++
Sbjct: 97 RLQRGHLLLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154
Query: 294 GKGC---ALTVYT--------YTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPD-IV 337
G G A+ EL + G A K K D
Sbjct: 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTE 212
Query: 338 LINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEK 397
+ + + G E +L + L+ + K + + A
Sbjct: 213 AFYKISTLYYQLGDHELSLSEVRE--CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270
Query: 398 MKANGVLPSPFTYSILID-------GFCKTNRVEKAHLLLEEMEE---------KGFPPC 441
+ + + + K E+ E + P
Sbjct: 271 GRYTDATSK-YESVMKTEPSIAEYTVRSKERIC-HCFSKDEKPVEAIRVCSEVLQMEPDN 328
Query: 442 PAAYCSLINGYGKAKRYEAANELFLELKE 470
A Y + Y+ A + + +E
Sbjct: 329 VNALKDRAEAYLIEEMYDEAIQDYETAQE 357
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 4e-06
Identities = 39/200 (19%), Positives = 69/200 (34%), Gaps = 30/200 (15%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
A T N++ ++ + G Y++ L E+ + G PD + L G+
Sbjct: 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKY 169
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQE--MKGKGCA 298
+ E+ + L P AK L S Y K G+ ++A L +E +
Sbjct: 170 EEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229
Query: 299 L------TVYTYTELIKGLGRAGRVEDA-----YGLFMNMLKEGCKPDIVL-INNLINVL 346
+ + G+ +D YG + K P + + NL +
Sbjct: 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALY 288
Query: 347 GRAGRLEDALKLFNKMEALQ 366
R G+ E A L A++
Sbjct: 289 RRQGKFEAAETLEEA--AMR 306
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 27/195 (13%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
T +++++ +G YE L E + G+ PD + L + +
Sbjct: 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKY 85
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGL---VQEMK---- 293
A L + ++E L A L +Y K G+ ++A L E++
Sbjct: 86 KDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 145
Query: 294 GKGCALTVYTYTELIKGLGRAGRVEDAYGLF---MNMLKE--GCK-PDIVL-INNLINVL 346
GK L G+ E+ + + + + G P++ NNL +
Sbjct: 146 GKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCY 205
Query: 347 GRAGRLEDALKLFNK 361
+ G+ + A L+ +
Sbjct: 206 LKQGKFKQAETLYKE 220
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 38/202 (18%), Positives = 66/202 (32%), Gaps = 34/202 (16%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
A T N++ ++ + G Y++ L E+ + G PD + L G+
Sbjct: 84 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGL----VQEMKGKG 296
+ E+ L P AK L S Y K G+ + A L + K
Sbjct: 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK- 202
Query: 297 CAL------TVYTYTELIKGLGRAGRVEDA-----YGLFMNMLKEGCKPDIVL-INNLIN 344
+ + + D+ YG + K P + + +L
Sbjct: 203 -EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGA 260
Query: 345 VLGRAGRLEDALKLFNKMEALQ 366
+ R G+LE A L + A +
Sbjct: 261 LYRRQGKLEAAHTLEDC--ASR 280
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 37/209 (17%), Positives = 63/209 (30%), Gaps = 42/209 (20%)
Query: 194 TANTYNSMILMLMQEGYYEKIHELYN---EMCNE--GNCFPDT-VTYSALISAFGKLGRD 247
A N + L+ + Y++ L N + + G P T + L +GK G+
Sbjct: 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY 101
Query: 248 ISAIRLFD---EMKENGLQP----TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT 300
A L E++E L AK L + G+ E+ + AL
Sbjct: 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRR------ALE 155
Query: 301 VY-------------TYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-------PDIVLI- 339
+Y T L + G+ +DA L+ +L + D I
Sbjct: 156 IYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIW 215
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCK 368
+ + D+ K
Sbjct: 216 MHAEEREESKDKRRDSAPYGEY--GSWYK 242
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 31/272 (11%), Positives = 70/272 (25%), Gaps = 65/272 (23%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399
++L + G+L++A F K L+ P+ E + +
Sbjct: 75 LQRGHLLLKQGKLDEAEDDFKK--VLKSNPS-------------------EQEEKEAESQ 113
Query: 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE--KGFPPCPAAYCSLINGYGKAKR 457
S +D F A + +++ + + K
Sbjct: 114 LVKADEMQRLRSQALDAF-DGADYTAA---ITFLDKILEVCVWDAELRELRAECFIKEGE 169
Query: 458 YEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYT 514
A +LK + + + + + G ++ + L+ D
Sbjct: 170 PRKAISDLKAASKLKS----DNTEAFYKISTLYYQLGDHELSLSEVR--ECLKLDQD--- 220
Query: 515 YNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574
+ ++ ++ V +N L + G A + +
Sbjct: 221 -HK------------RCFAHYKQ------VKKLNKLIESAEELIRDGRYTDATSKYESV- 260
Query: 575 HSEIKPDAVSYNTILG-----CLSRAGMFEEA 601
+ +P Y C S+ EA
Sbjct: 261 -MKTEPSVAEYTVRSKERICHCFSKDEKPVEA 291
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 6e-06
Identities = 43/295 (14%), Positives = 87/295 (29%), Gaps = 32/295 (10%)
Query: 205 LMQEGYYEKIHELYN---EMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM---- 257
+ +G ++ L E G + V S L G ++ L +
Sbjct: 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA 83
Query: 258 -KENGLQPTAKIYTTLVSIYFKLGEV-------EKALGLVQEMKGKGCALTVYTYTELIK 309
+ + I F G + EKA L+ E + + + +
Sbjct: 84 RQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQ 143
Query: 310 GLGRAGRVEDAYGLF---MNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEAL 365
L R+++A + +L + LI G L++A N++E L
Sbjct: 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENL 203
Query: 366 QCK----PNVVTYNTVIKSLFESKAP-ASEASAWFEKMKANGVLPSPFT---YSILIDGF 417
+ ++ ++ ++ + A+ W + F + +
Sbjct: 204 LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263
Query: 418 CKTNRVEKAHLLLEEM----EEKGFPPCPA-AYCSLINGYGKAKRYEAANELFLE 467
E A ++LEE+ L Y +A R A + L+
Sbjct: 264 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD 318
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 9e-06
Identities = 50/384 (13%), Positives = 94/384 (24%), Gaps = 104/384 (27%)
Query: 230 DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV 289
V ++ L + + + +GL P V ++AL +
Sbjct: 191 QVVAIASNNGGKQALETVQRLLPVLC--QAHGLTPA------QVVAIASHDGGKQALETM 242
Query: 290 QEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGR 348
Q L V A+GL PD +V I + I
Sbjct: 243 QR------LLPVLC---------------QAHGL---------PPDQVVAIASNIGGKQA 272
Query: 349 AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPF 408
++ L + + A P+ + A L
Sbjct: 273 LETVQRLLPVLCQ--AHGLTPD-------------------QVVAIASHGGGKQALE--- 308
Query: 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELF--- 465
T L+ C+ + + P A S G + + +
Sbjct: 309 TVQRLLPVLCQAHGLT--------------PDQVVAIASHDGGKQALETVQRLLPVLCQA 354
Query: 466 LELKEYCGCSSARVYAVMIKHFGKC----GRLSDAVDLFNEMKKLRCKPD-VYTYNALMS 520
L V I G + + + + L PD V +
Sbjct: 355 HGLT--------PDQVVAIASNGGGKQALETVQRLLPVLCQAHGL--TPDQVVAIASN-- 402
Query: 521 GMVRA-GMIDDAYSLLRRMEEDGCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQHSEI 578
G +A + +L + PD + + G +R + + Q +
Sbjct: 403 GGKQALETVQRLLPVLCQAHGLT--PDQVVAIASHDGGKQALETVQRLLPVLC--QTHGL 458
Query: 579 KPD-AVSYNTILGCLSRAGMFEEA 601
P V+ + G ++
Sbjct: 459 TPAQVVAIASHDGGKQALETVQQL 482
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 38/253 (15%), Positives = 75/253 (29%), Gaps = 51/253 (20%)
Query: 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELY 218
+L + L L+I K + P + Y + L + G K++ +
Sbjct: 305 SDLLLCKADTLFVRSRFIDVLAIT--TKILEIDPYNLDVYPLHLASLHESGEKNKLYLIS 362
Query: 219 NEMCNEGNCFPDT-VTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIY 276
N++ + P+ VT+ A+ + + + A R F K + + P + +
Sbjct: 363 NDLVDR---HPEKAVTWLAVGIYYLCVNKISEARRYFS--KSSTMDPQFGPAWIGFAHSF 417
Query: 277 FKLGEVEKA--------------------LGLVQEMKGK-GCALTVY--------TYTEL 307
GE ++A LG+ G A L
Sbjct: 418 AIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLL 477
Query: 308 IKGLGRA----GRVEDAYGLF-----MNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALK 357
+ LG ++ A F + + + NL + + + A+
Sbjct: 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537
Query: 358 LFNKMEALQCKPN 370
N+ L N
Sbjct: 538 ALNQ--GLLLSTN 548
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 59/462 (12%), Positives = 129/462 (27%), Gaps = 56/462 (12%)
Query: 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNE-MCNEG 225
+L K + N++ + Y C + + +L + + K + N+ + +G
Sbjct: 137 KCLLTKEDLYNRSSACRYLA--AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDG 194
Query: 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEK 284
+ + L A + E + + + LVS + + E
Sbjct: 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFDQLVSNHLLTADEEW 252
Query: 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK--EGCKPDIVLINNL 342
L +++ L ED + L G + L+
Sbjct: 253 DL-VLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311
Query: 343 INVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEK-MKA 400
+ L R D L + K L+ P + Y + SL ES ++ +
Sbjct: 312 ADTLFVRSRFIDVLAITTK--ILEIDPYNLDVYPLHLASLHESGEK-NKLYLISNDLVDR 368
Query: 401 NGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-------PPCPAAYCSLINGY 452
+ P T+ + + N++ +A + F P A+ + +
Sbjct: 369 H---PEKAVTWLAVGIYYLCVNKISEA--------RRYFSKSSTMDPQFGPAWIGFAHSF 417
Query: 453 GKAKRYEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509
++ A + L + G ++ M + G + A +
Sbjct: 418 AIEGEHDQAISAYTTAARLFQ--GTHLPYLFLGMQ--HMQLGNILLANEYLQ--SSYALF 471
Query: 510 P-DVYTYNALMSGMV--RAGMIDDAYSLLRR-MEEDGCVPDINSHNI-ILNGLA----KS 560
D N L G+V + A + + + L K
Sbjct: 472 QYDPLLLNEL--GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 561 GGPKRAMEIFTKMQHSEIKPDAVSYNTILG-CLSRAGMFEEA 601
A++ + + + + +T + + A
Sbjct: 530 KMYDAAIDALNQGL--LLSTNDANVHTAIALVYLHKKIPGLA 569
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 23/133 (17%), Positives = 39/133 (29%), Gaps = 19/133 (14%)
Query: 245 GRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVY- 302
+ +P + L +G+ VQ L ++
Sbjct: 3 ADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQR------GLALHP 54
Query: 303 TYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPD-IVLINNLINVLGRAGRLEDALK 357
+ E + LGR R +A L P+ + L + L AG+ E A
Sbjct: 55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASD--AAPEHPGIALWLGHALEDAGQAEAAAA 112
Query: 358 LFNKMEALQCKPN 370
+ + A Q P
Sbjct: 113 AYTR--AHQLLPE 123
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 7e-05
Identities = 44/314 (14%), Positives = 88/314 (28%), Gaps = 55/314 (17%)
Query: 236 ALISAFGKLGRDISAIRLFDEMKE--NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMK 293
A ++ ++GR +E K LQ YF+ VE A Q+++
Sbjct: 22 ASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ 81
Query: 294 GKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE-------------GCKPDIVLI- 339
+ T+ E++ + G +N+ + +P++V
Sbjct: 82 EE-MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAW 140
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN--------TVIKSLFESKAPASEA 391
N L V + G + A F+ AL N V+ S E ++
Sbjct: 141 NQLGEVYWKKGDVTSAHTCFSG--ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDS 198
Query: 392 SAWFEK---MKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEE------------K 436
+ M ++ IL G + + ++ +
Sbjct: 199 VRQAKLAVQMDVL----DGRSWYIL--GNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 437 GFPPCPAAYCSLINGYGKAKRYEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRL 493
P + + + + Y A E F L + RL
Sbjct: 253 KASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA----WPEPQQREQQLLEFLSRL 308
Query: 494 SDAVDLFNEMKKLR 507
+ ++ + K +
Sbjct: 309 TSLLESKGKTKPKK 322
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 33/227 (14%), Positives = 67/227 (29%), Gaps = 39/227 (17%)
Query: 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELY 218
V+ + + + + P A+ I L++ ++ L
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVV--MEKDPFHASCLPVHIGTLVELNKANELFYLS 79
Query: 219 NEMCNEGNCFPDT-VTYSALISAFGKLGRDI-SAIRLFDEMKENGLQPT-AKIYTTLVSI 275
+++ + +P V++ A+ + +G A R K L+ T +
Sbjct: 80 HKLVDL---YPSNPVSWFAVGCYYLMVGHKNEHARRYLS--KATTLEKTYGPAWIAYGHS 134
Query: 276 YFKLGEVEKAL-----------GLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLF 324
+ E ++A+ G M G G + A F
Sbjct: 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEY------------GLTNNSKLAERFF 182
Query: 325 MNMLKEGCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPN 370
L P D +++ + V + G + A K F AL+
Sbjct: 183 SQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLD--ALEKIKA 225
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 9e-04
Identities = 30/162 (18%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 240 AFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGL----VQEMKG 294
+G A R F + + P + + + F+ GE + A ++++K
Sbjct: 168 EYGLTNNSKLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225
Query: 295 KGCALTVYTYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRA 349
G +TV + L+ LG + +A L P + + +
Sbjct: 226 IGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV--LIPQNASTYSAIGYIHSLM 283
Query: 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391
G E+A+ F+ AL + + T++ E SEA
Sbjct: 284 GNFENAVDYFHT--ALGLRRDDTFSVTMLGHCIEMYIGDSEA 323
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 9e-05
Identities = 35/213 (16%), Positives = 59/213 (27%), Gaps = 41/213 (19%)
Query: 177 NKALSIFYQIKSRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNE-----------MCNE 224
+ L + +P ++ + + + E + N+
Sbjct: 123 QRCLEL---------QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNK 173
Query: 225 GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-NGLQPTAKIYTTLVSIYFKLGEVE 283
T S L L+ E NG + T L ++ GE
Sbjct: 174 KGSPGLTRRMSKSPVDSSVL---EGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFN 230
Query: 284 KALGLVQEMKGKGCALTVY-TYTELIKGLGRA----GRVEDAYGLFMNMLKEGCKPDIVL 338
+A+ ALTV L LG R E+A + L+ +P +
Sbjct: 231 RAIDAFNA------ALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE--IQPGFIR 282
Query: 339 -INNLINVLGRAGRLEDALKLFNKMEALQCKPN 370
NL G +A+ F AL +
Sbjct: 283 SRYNLGISCINLGAYREAVSNFLT--ALSLQRK 313
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 52/319 (16%), Positives = 90/319 (28%), Gaps = 43/319 (13%)
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
L++G ED + + N L + G+ E AL+ K E L
Sbjct: 23 NLMEGENSLDDFEDKVFYRTEFQNR--EFKATMCNLLAYLKHLKGQNEAALECLRKAEEL 80
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ + + + A ++ V+K
Sbjct: 81 IQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIY---------------------VDK 119
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKA--KRYEAANELF---LELK-EYCGCSSARV 479
+ E+ P C K + E A F LE K + +S
Sbjct: 120 VKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG-- 177
Query: 480 YAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTYN----ALMSGMVRAGMIDDAYSL 534
A+ +A+D + +R PD Y L + L
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLR--QAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235
Query: 535 LRR-MEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLS 593
+ +E+ V D+ + P +A+E+ K E P+ + +GC
Sbjct: 236 VEEALEKAPGVTDV--LRSAAKFYRRKDEPDKAIELLKKAL--EYIPNNAYLHCQIGCCY 291
Query: 594 RAGMFEEAARLMKDMNAKG 612
RA +F+ M K
Sbjct: 292 RAKVFQVMNLRENGMYGKR 310
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 40/256 (15%), Positives = 77/256 (30%), Gaps = 31/256 (12%)
Query: 242 GKLGRDISAI--RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE-------- 291
+ + ++F + + A + L + G+ E AL +++
Sbjct: 25 MEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE 84
Query: 292 ---MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR 348
+T Y + +GR V+ ++ ++ P + L G
Sbjct: 85 HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGW 144
Query: 349 A------GRLEDALKLFNKMEALQCKPNVVTYNT---VIKSLFESKAPASEASAWFEK-M 398
+ E A F K AL+ KP + + + ++ P+ A + +
Sbjct: 145 TRLKCGGNQNERAKVCFEK--ALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI 202
Query: 399 KANGVLPSPFTY--SILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456
+ N L + + L+EE EK P S Y +
Sbjct: 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKD 261
Query: 457 RYEAANELF---LELK 469
+ A EL LE
Sbjct: 262 EPDKAIELLKKALEYI 277
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 4e-04
Identities = 48/332 (14%), Positives = 96/332 (28%), Gaps = 58/332 (17%)
Query: 181 SIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240
+FY+ + + + A N + + +G E E +
Sbjct: 37 KVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRK-------------------- 76
Query: 241 FGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKG---KG 296
A L + + + + + +Y+ +G + V ++K K
Sbjct: 77 ---------AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127
Query: 297 CALTVYTYTELIKGLGRA------GRVEDAYGLFMNMLKEGCKPDIV-LINNLINV---L 346
+ EL G + E A F L++ KP + L L
Sbjct: 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRL 185
Query: 347 GRAGRLEDALKLFNKMEALQCKP-NVVTYN---TVIKSLFESKAPASEASAWFEKMKANG 402
++A+ + A++ P N + + E E E +A
Sbjct: 186 DNWPPSQNAIDPLRQ--AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE--EALE 241
Query: 403 VLPS-PFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAA 461
P + + + +KA LL++ E P +C + Y +AK ++
Sbjct: 242 KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IPNNAYLHCQIGCCY-RAKVFQVM 299
Query: 462 NELFLELKEYCGCSSARVYAVMIKHFGKCGRL 493
N + +A + H K
Sbjct: 300 NLRENGMYGKRKLLELIGHA--VAHLKKADEA 329
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 31/238 (13%), Positives = 66/238 (27%), Gaps = 47/238 (19%)
Query: 141 IGVMWKSIQDMVRSTCVMGPS-VLSEIVNILGKA-KMVNKALSIFYQIKSRKCKPTANTY 198
+G ++ + E+ + L A + LS+ + R +
Sbjct: 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA--QGRAF 190
Query: 199 NSMILMLMQEGYYEKIHELYN---EMCNE-GNCFPDTVTYSALISAFGKLGRDISAIRLF 254
++ G + + + E G+ + YS L +A+ LG +A +
Sbjct: 191 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250
Query: 255 D---EMKE--NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIK 309
+ A+ +L + Y L + EKA+ + L +
Sbjct: 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIA------- 297
Query: 310 GLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEALQ 366
+ + +L N G + A+ K L+
Sbjct: 298 ------------------QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK--HLE 335
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 8e-04
Identities = 36/203 (17%), Positives = 71/203 (34%), Gaps = 17/203 (8%)
Query: 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPN-VVTYNTVIKSLFESKAPASEASAWFEKM 398
NNL N+ G +E+A++L+ K AL+ P ++ + L + EA ++
Sbjct: 13 NNLANIKREQGNIEEAVRLYRK--ALEVFPEFAAAHSNLASVLQQQGKLQ-EALMHYK-- 67
Query: 399 KANGVLP-SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKR 457
+A + P YS + + + V+ A + P A+ +L + + +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN 126
Query: 458 YEAANELF---LELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYT 514
A + L+LK Y + +D + ++ + D
Sbjct: 127 IPEAIASYRTALKLKP----DFPDAYCNLAHCLQIVCDWTDYDERMKKL--VSIVADQLE 180
Query: 515 YNALMSGMVRAGMIDDAYSLLRR 537
N L S M+ R+
Sbjct: 181 KNRLPSVHPHHSMLYPLSHGFRK 203
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.63 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.62 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.6 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.58 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.57 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.57 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.35 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.33 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.33 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.3 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.1 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.06 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.06 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.02 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.02 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.99 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.99 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.98 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.93 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.91 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.8 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.8 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.79 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.77 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.75 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.71 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.63 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.62 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.61 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.59 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.57 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.54 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.54 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.53 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.5 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.48 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.46 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.44 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.43 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.4 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.37 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.37 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.33 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.32 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.32 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.3 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.26 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.21 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.17 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.16 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.13 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.09 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.08 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.07 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.06 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.03 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.03 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.99 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.97 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.93 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.92 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.89 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.84 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.67 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.59 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.58 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.58 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.22 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.87 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.86 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.69 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.68 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.67 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.65 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.55 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.54 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.48 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.24 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.22 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.2 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.17 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.17 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.09 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.99 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.72 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.57 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.83 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.68 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.54 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.43 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.33 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 93.11 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 92.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.13 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.47 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.36 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.12 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.06 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.06 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.57 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.04 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.97 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.81 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.74 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.09 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 88.4 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 88.37 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.2 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 88.1 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 87.54 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 84.4 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 83.63 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.47 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.16 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 82.41 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 80.05 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-41 Score=357.93 Aligned_cols=490 Identities=10% Similarity=-0.012 Sum_probs=419.8
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
++...|+.++..+.+.|++++|..+++++.. ..|+..++..++.+|.+.|++++|..+|+++... .++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 4778999999999999999999999999986 5678899999999999999999999999998654 67899999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC--------------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEG--------------NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKI 268 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 268 (638)
.+|.+.|++++|+++|+++.... ...++..+|+.++.+|.+.|++++|+++|++|.+.+ +.+...
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~ 236 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEA 236 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHH
Confidence 99999999999999999643322 011358899999999999999999999999999864 235666
Q ss_pred HHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006624 269 YTTLVSIYFKLGEVEKALG--L-VQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV 345 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~--~-~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 345 (638)
+..++..+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.++.+
T Consensus 237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence 7777666554443332221 1 555555555556677888899999999999999999999876 4799999999999
Q ss_pred HHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 346 LGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425 (638)
Q Consensus 346 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 425 (638)
|.+.|++++|.++|+++.+.+. .+..+++.++..+...|+..++ ..+++.+.... +.+..++..++..|.+.|++++
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKL-YLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHH-HHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHH-HHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999987653 3778899999999999999888 88888887543 5578899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
|.++|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 677889999999999999999999999999986 456789999999999999999999999999987
Q ss_pred CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006624 506 LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIK 579 (638)
Q Consensus 506 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 579 (638)
.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +
T Consensus 470 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 64 457889999999999999999999999999876 66787 7899999999999999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 580 PDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
.+..+|..++.+|.+.|++++|.++++++.+.. +-+...+..+...|
T Consensus 548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 478999999999999999999999999999752 33455666665554
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=349.29 Aligned_cols=465 Identities=12% Similarity=0.020 Sum_probs=403.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
.++...++.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+++.... ++..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~ 155 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACRYL 155 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHHHH
Confidence 357788999999999999999999999999864 5788999999999999999999999999986542 78999999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKEN---------------GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 301 (638)
++..|.+.|++++|.++|+++... |.+++..+|+.++.+|.+.|++++|+++|++|.+.++. +.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hh
Confidence 999999999999999999953221 23446889999999999999999999999999987654 66
Q ss_pred HHHHHHHHHHHhcCCHHHHHH--H-HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006624 302 YTYTELIKGLGRAGRVEDAYG--L-FMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 302 ~~~~~li~~~~~~g~~~~A~~--~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
..+..+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..+++.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 677777665554443332221 1 555555555556667888899999999999999999999775 58999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 006624 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
..+.+.|+..++ ..+|+++...+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++
T Consensus 313 ~~~~~~g~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 313 DTLFVRSRFIDV-LAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHTTCHHHH-HHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcCHHHH-HHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 999999999888 88889888764 3477889999999999999999999999999765 77899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 006624 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRM 538 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 538 (638)
++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 467 (597)
T 2xpi_A 390 SEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSS 467 (597)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999886 45678899999999999999999999999998864 457889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 612 (638)
.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 468 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 468 YALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9864 347899999999999999999999999999875 66787 7899999999999999999999999999764
Q ss_pred CCCCHhhHHHHHHHHhccCCccCC
Q 006624 613 FEYDQITYSSILEAVGKVDEDRNP 636 (638)
Q Consensus 613 ~~p~~~~~~~l~~~~~~~g~~~~a 636 (638)
+.+..+|..+..+|.+.|++++|
T Consensus 547 -p~~~~~~~~l~~~~~~~g~~~~A 569 (597)
T 2xpi_A 547 -TNDANVHTAIALVYLHKKIPGLA 569 (597)
T ss_dssp -SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -CCChHHHHHHHHHHHHhCCHHHH
Confidence 55888999999999999998765
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=6.8e-28 Score=242.93 Aligned_cols=362 Identities=14% Similarity=0.089 Sum_probs=199.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
...+.+.|++++|.+.++.+.+.. +.+...+..+...+.+.|++++|...++...+.. +.+..+|..++.++.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445556666666666666665542 3444555556666666666666666666665543 23556666666666666666
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++....+ .+..+|..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666665543 344556666666666666666666666666542 12344455555566666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
+.+..+. +..+|..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...+++.....
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----- 233 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----
Confidence 6554332 4555555666666666666666666665554332 44455555555555555555555554443311
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 451 (638)
+.+..++..+..++.+.|++++|...++++.+.+ +.++.++..++..
T Consensus 234 --------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 234 --------------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred --------------------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 1123444555555566666666666666665543 4445555555555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 006624 452 YGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDA 531 (638)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 531 (638)
+.+.|++++|.+.++++.+. .+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|
T Consensus 281 ~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555555554 23444555555555555555555555555554431 22344445555555555555555
Q ss_pred HHHHHHHHH
Q 006624 532 YSLLRRMEE 540 (638)
Q Consensus 532 ~~~~~~~~~ 540 (638)
.+.|+++.+
T Consensus 359 ~~~~~~a~~ 367 (388)
T 1w3b_A 359 LMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 555555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-28 Score=242.71 Aligned_cols=361 Identities=15% Similarity=0.087 Sum_probs=173.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..+.+.|++++|...+.++.+..+. +...+..+...+.+.|++++|...++...+..+ .+..+|..+...+.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHCCCH
Confidence 3444555555555555555444221 344444455555555555555555555555443 3445555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
++|++.|+++.+.. +.+..+|..++.++.+.|++++|.+.++++.+.++. +...+..+...+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555432 123334555555555555555555555555444322 3334444444444455555555555554
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH
Q 006624 328 LKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP 407 (638)
Q Consensus 328 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 407 (638)
.+..+. +..++..+...+.+.|++++|...|+++.+.+ +.+.
T Consensus 162 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------------p~~~ 203 (388)
T 1w3b_A 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------------------------------------PNFL 203 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------------------------TTCH
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------------------------------------CCcH
Confidence 443221 34444444444444454444444444443311 1122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHF 487 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 487 (638)
..|..+...+...|++++|...+++..+.. |.+..++..++ ..|
T Consensus 204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~-----------------------------------~~~ 247 (388)
T 1w3b_A 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLA-----------------------------------CVY 247 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHH-----------------------------------HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHH-----------------------------------HHH
Confidence 233344444455555555555555544432 33344444444 444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 488 GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
...|++++|...|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..++..+.+.|++++|.
T Consensus 248 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHH
Confidence 44555555555555444432 1223445555555555555555555555555432 234455555555555555555555
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 568 EIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 568 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
+.++++.+.. +.+..++..+..+|.+.|++++|.+.++++.+
T Consensus 326 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 326 RLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555321 12344555555555555555555555555553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=267.03 Aligned_cols=214 Identities=19% Similarity=0.206 Sum_probs=121.5
Q ss_pred HHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 390 EASAWFEKMKANGVLPSPF-TYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLEL 468 (638)
Q Consensus 390 a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 468 (638)
.++.+.+.+.+.+..+.+. .++.+|++|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++.+..+++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------- 80 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------- 80 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence 3344444454444433322 34455555555555555555555555555555555555555555544321000
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006624 469 KEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDIN 548 (638)
Q Consensus 469 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 548 (638)
.+.+.+++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..
T Consensus 81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 141 (501)
T 4g26_A 81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141 (501)
T ss_dssp -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence 0112245666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 006624 549 SHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 549 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
||+.+|.+|++.|++++|.++|++|.+.|+.||..||++|+.+|++.|++++|.+++++|.+.|..|+..||+.|++.+.
T Consensus 142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred c
Q 006624 629 K 629 (638)
Q Consensus 629 ~ 629 (638)
.
T Consensus 222 s 222 (501)
T 4g26_A 222 S 222 (501)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-30 Score=262.49 Aligned_cols=206 Identities=14% Similarity=0.140 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHCCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------
Q 006624 353 EDALKLFNKMEALQCKPNV-VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNR--------- 422 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 422 (638)
..+..+.+.+.+.+..+.+ ..++.+|.+|++.|+..+| ..+|++|.+.|+.||..||+.||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A-~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEA-LRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHH-HHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4455666777777765543 4688899999999999888 9999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 423 VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 423 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 34555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK 559 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 559 (638)
|.+.|+.||..||++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 166 M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 166 MVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555444443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=9e-24 Score=221.36 Aligned_cols=440 Identities=9% Similarity=-0.038 Sum_probs=278.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|......+.+.|++++|+..|++++... |++.++..++.++.+.|++++|...|+++.+.++. +..+|..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4567778888889999999999999988854 68888888999999999999999999988877533 67888888899
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+.+.|++++|+..|+++...++ ++......++..+........+.+.+..+...+..|+...+..-............
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD--FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS--CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHhhHHHHHHHHHHHHhcCC--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999888765 45455555555544443333344433333222211211111110000000111111
Q ss_pred HHHHHHHHHhCCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCC--------CCHHHH
Q 006624 285 ALGLVQEMKGKGC---------ALTVYTYTELIKGLGR---AGRVEDAYGLFMNMLK-----EGCK--------PDIVLI 339 (638)
Q Consensus 285 A~~~~~~m~~~~~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~-----~~~~--------p~~~~~ 339 (638)
...+...+..... +.+...+......+.. .|++++|...|+++.+ ..-. .+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111110 1123344444444443 6777777777777776 2111 124456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 340 NNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK 419 (638)
Q Consensus 340 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 419 (638)
..+...+...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+...+..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEY-YNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTG-GGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHH-HHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 667777777777777777777776644 3355555666666666666555 55555555442 2345567777777888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 420 TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 420 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
.|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888877765 556677777778888888888888888887765 344566777777788888888888888
Q ss_pred HHHHHhCCC-CCC----HhhHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 500 FNEMKKLRC-KPD----VYTYNALMSGMVR---AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 500 ~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
++++.+... .++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 877765321 111 2367777777777 788888888888777653 2356677777778888888888888888
Q ss_pred HhhhC
Q 006624 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
++.+.
T Consensus 474 ~a~~~ 478 (514)
T 2gw1_A 474 ESADL 478 (514)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.8e-24 Score=222.27 Aligned_cols=445 Identities=11% Similarity=-0.014 Sum_probs=331.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+......+.+.|++++|+..|+++.+.+ |+..+|..++.++.+.|++++|++.|+++.+.++ .+...+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHH
Confidence 3466777889999999999999999998874 6899999999999999999999999999998775 67789999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
++.+.|++++|...|+++.+.+ +++......++..+.+......+.+.+..+...+..|+...+...............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred HHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 9999999999999999999875 345555556666655554444554444433333222222211111111111111111
Q ss_pred HHHHHHHHHHcCC---------CCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----CCCCC--------CHhHH
Q 006624 320 AYGLFMNMLKEGC---------KPDIVLINNLINVLGR---AGRLEDALKLFNKMEA-----LQCKP--------NVVTY 374 (638)
Q Consensus 320 A~~~~~~~~~~~~---------~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~~p--------~~~~~ 374 (638)
...+...+..... +.+...+......+.. .|++++|...++++.+ ....| +...+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 1111111111111 1124555555555554 8999999999999987 42122 34567
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc
Q 006624 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK 454 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 454 (638)
..+...+...|+..++ ...++.+.... |+...+..+..++...|++++|...++++.+.. +.+..++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A-~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGA-HEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHH-HHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHH-HHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHH
Confidence 7777788888888887 77778877754 338888999999999999999999999999875 6778899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHH
Q 006624 455 AKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSL 534 (638)
Q Consensus 455 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 534 (638)
.|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...
T Consensus 317 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKEL-DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHT-CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh-ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999986 44567889999999999999999999999998753 34567888999999999999999999
Q ss_pred HHHHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 535 LRRMEEDGCV-PD----INSHNIILNGLAK---SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 535 ~~~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999874211 11 3488899999999 999999999999998753 2367888999999999999999999999
Q ss_pred HHHhCCCCCCHh
Q 006624 607 DMNAKGFEYDQI 618 (638)
Q Consensus 607 ~m~~~~~~p~~~ 618 (638)
++.+. .|+..
T Consensus 474 ~a~~~--~~~~~ 483 (514)
T 2gw1_A 474 ESADL--ARTME 483 (514)
T ss_dssp HHHHH--CSSHH
T ss_pred HHHHh--ccccH
Confidence 99864 45543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-22 Score=206.89 Aligned_cols=302 Identities=11% Similarity=0.092 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..++..+.+.|++++|++.|+++....+ .+...+..++..+...|++++|.+.|+++.+.+ +.+..++..++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 344455555555555555555555555554433 344455555555555555555555555555442 22344555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTV---YTYTEL------------IKGLGRAGRVEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
..|.+.|++++|.+.|+++.+.++. +. ..+..+ ...+...|++++|...|+++.+... .+..+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 5555555555555555555544321 22 233333 3335566666666666666665532 25556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (638)
+..++.+|.+.|++++|.+.|+++.+.. +.+..++..++.+|.
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------------------------~~~~~~~~~l~~~~~ 222 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK-------------------------------------NDNTEAFYKISTLYY 222 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH-------------------------------------CSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHH
Confidence 6666666666666666666666554311 223445555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHhhHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCc----HHHHHH
Q 006624 419 KTNRVEKAHLLLEEMEEKGFPPCPAAYCSL------------INGYGKAKRYEAANELFLELKEYCGCSS----ARVYAV 482 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ 482 (638)
..|++++|...++++.+.. +.+...+..+ +..+.+.|++++|...|+++.+... .+ ...+..
T Consensus 223 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~ 300 (450)
T 2y4t_A 223 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SIAEYTVRSKER 300 (450)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cchHHHHHHHHH
Confidence 6666666666666666543 3333333333 4444455555555555555544311 11 224444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 483 MIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 483 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
+...+.+.|++++|...++++.+.. +.+...|..+..+|...|++++|...++++.+
T Consensus 301 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 301 ICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455555555555555555544331 22344455555555555555555555555554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-22 Score=205.70 Aligned_cols=338 Identities=9% Similarity=0.025 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+|..++..+.+.|++++|+..|+.++... +.+..++..++.++.+.|++++|...|+++.+.++. +..++..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence 44455555555555555555555555554431 334445555555555555555555555555444322 3445555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDT---VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+|.+.|++++|.+.|+++....+ .+. ..+..++..+.. ..+..+...+.+.|
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNP--SENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCC--CChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcC
Confidence 55555555555555555554332 222 233333222110 11223355588899
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++++|++.++++.+..+. +...+..++..|.+.|++++|...|+++.+... .+..++..++..|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999887554 788899999999999999999999999988643 378899999999999999999999999
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
.+.... |+.......+..+ . ....+..+...+.+.|++++|...|+++.+.. +.
T Consensus 236 ~~~~~~--p~~~~~~~~~~~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~ 289 (450)
T 2y4t_A 236 ECLKLD--QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS 289 (450)
T ss_dssp HHHHHC--TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CS
T ss_pred HHHHhC--CChHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cc
Confidence 997643 5444332222111 0 11223446788899999999999999998864 33
Q ss_pred C----HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhH
Q 006624 441 C----PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPD-VYTY 515 (638)
Q Consensus 441 ~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~ 515 (638)
+ ...+..++..+.+.|++++|...++.+.+. .+.+..+|..+..+|...|++++|...|+++.+. .|+ ...+
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 366 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQQIR 366 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHH
Confidence 3 347888899999999999999999999886 4557889999999999999999999999999885 354 4455
Q ss_pred HHHH
Q 006624 516 NALM 519 (638)
Q Consensus 516 ~~l~ 519 (638)
..+.
T Consensus 367 ~~l~ 370 (450)
T 2y4t_A 367 EGLE 370 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-22 Score=209.67 Aligned_cols=434 Identities=12% Similarity=0.044 Sum_probs=311.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|+++++.. +.++.++..+..+|.+.|++++|+..|+++.+.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4577888999999999999999999998864 667889999999999999999999999999887543 78899999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~ 282 (638)
+...|++++|++.|+ .....+ +. ....+..+...+...+|...++++.+.. ..+........+..+....+.
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~---~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNG---DF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHcCCHHHHHHHHH-HHhcCC---CC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999996 444332 21 1222444555566678888888886531 001111123334445566666
Q ss_pred HHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCALTV-YTYTELIKGLGR--------AGRVEDAYGLFMNMLKEGCKPD-------IVLINNLINVL 346 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~l~~~~ 346 (638)
+.+...+...... .+.. .....+...+.. .|++++|..+|+++.+..+. + ..++..+...+
T Consensus 177 ~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 177 HLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 6665554433322 1221 122233322222 24788888888888876433 2 23466667778
Q ss_pred HccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 347 GRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKA 426 (638)
Q Consensus 347 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 426 (638)
...|++++|...++.+.+.. |+...+..+...+...|+..++ ...++...... +.+..++..+...+...|++++|
T Consensus 254 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEF-FKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHH-HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHH-HHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 88888899998888887754 5566777777777777777777 66666666543 34677888889999999999999
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 427 HLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
...++++.+.. +.+..++..+...+...|++++|.+.++++.+. .+.+...+..+...+...|++++|...|+++.+.
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 407 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL 407 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 99999988875 666788889999999999999999999999886 4556778888999999999999999999988654
Q ss_pred C-----CCCCHhhHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 507 R-----CKPDVYTYNALMSGMVRA----------GMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFT 571 (638)
Q Consensus 507 ~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 571 (638)
. .......+..+...+... |++++|...|+++.+.. +.+...+..+...+.+.|++++|.+.|+
T Consensus 408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 2 011122234445667777 99999999999998863 3367888889999999999999999999
Q ss_pred HhhhC
Q 006624 572 KMQHS 576 (638)
Q Consensus 572 ~m~~~ 576 (638)
+..+.
T Consensus 487 ~al~~ 491 (537)
T 3fp2_A 487 DSAIL 491 (537)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98864
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-22 Score=211.81 Aligned_cols=429 Identities=13% Similarity=0.061 Sum_probs=326.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...+..+...+.+.|++++|+..|+++.+..+. +..+|..+..+|.+.|++++|++.|+++...++ .+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHH
Confidence 456778888999999999999999999887543 889999999999999999999999999998876 67888999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHh
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG------CALTVYTYTELIKGLGR 313 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~~~li~~~~~ 313 (638)
.+...|++++|.+.|+ .... .|+ .....+..+...+...+|...++++.... ..|+... +..+..
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~ 172 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTS----LASFFG 172 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHH----HHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhH----HHHHHH
Confidence 9999999999999996 3332 222 22223445566666788999998886542 2233333 334555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHc--------cCCHHHHHHHHHHHHHCCCCCC--------HhHHHH
Q 006624 314 AGRVEDAYGLFMNMLKEGCKPDIV-LINNLINVLGR--------AGRLEDALKLFNKMEALQCKPN--------VVTYNT 376 (638)
Q Consensus 314 ~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 376 (638)
..+.+.+...+...... .+... ....+...+.. .|++++|..+++.+.+.. |+ ...+..
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~ 248 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCY 248 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHH
Confidence 66666665554433322 22222 33333333332 257899999999998754 44 224555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC
Q 006624 377 VIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK 456 (638)
Q Consensus 377 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 456 (638)
+...+...++..++ ...++..... .|+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 249 ~g~~~~~~~~~~~A-~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 249 TGIFHFLKNNLLDA-QVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHTTCHHHH-HHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcccHHHH-HHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 55667777887777 7777887775 4568889999999999999999999999999876 778899999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHH
Q 006624 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLR 536 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 536 (638)
++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+
T Consensus 325 ~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSL-NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHH-CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999987 34567889999999999999999999999998864 4456788999999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 537 RMEEDG-----CVPDINSHNIILNGLAKS----------GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEA 601 (638)
Q Consensus 537 ~~~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 601 (638)
++.+.. .......+..+...+... |++++|...|+++.+.. +.+...+..+..+|.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 988642 111233345556777787 99999999999998753 23678899999999999999999
Q ss_pred HHHHHHHHhC
Q 006624 602 ARLMKDMNAK 611 (638)
Q Consensus 602 ~~~~~~m~~~ 611 (638)
.+.+++..+.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999864
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.5e-19 Score=175.43 Aligned_cols=325 Identities=9% Similarity=0.036 Sum_probs=198.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
+..|..+...+.+.|++++|...++.+++.. +.++.++..+...+...|++++|...|+++.+..+. +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 3445555555555566666666555555532 334555555555555555555555555555544221 44555555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCC---C-HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFP---D-TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+...|++++|.+.|+++.+.. | + ...+..+..... ...+..+...+...|
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN---PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHcCChHHHHHHHHHHHhcC---CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 555555555555555555543 2 1 111111111000 111223467788888
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++++|.+.++++.+..+. +...+..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 888888888888877554 778888888888889999999999988887643 377888888888999999999999988
Q ss_pred HHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP 440 (638)
Q Consensus 361 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 440 (638)
...+.. |+...... .+..+. .......+...+.+.|++++|...++++.+.. +.
T Consensus 213 ~a~~~~--~~~~~~~~-----------------~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 266 (359)
T 3ieg_A 213 ECLKLD--QDHKRCFA-----------------HYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PS 266 (359)
T ss_dssp HHHHHC--TTCHHHHH-----------------HHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CS
T ss_pred HHHhhC--ccchHHHH-----------------HHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC
Confidence 887643 33222111 111111 11223334667788888999988888888764 33
Q ss_pred CHh----hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 441 CPA----AYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL 506 (638)
Q Consensus 441 ~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 506 (638)
+.. .+..+...+.+.|++++|.+.++.+.+. .+.+..++..+...|...|++++|...|++..+.
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 332 2444566667777777777777777665 3345666666666666666666666666666654
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-18 Score=173.32 Aligned_cols=329 Identities=9% Similarity=0.033 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|++.|+++.+..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP--DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3444444555555555555555555544433 334445555555555555555555555554432 1234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCA--LTVYTYT------------ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINN 341 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~--~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 341 (638)
+...|++++|.+.++++.+..+. .+...+. .+...+...|++++|...++++.+..+ .+..++..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 55555555555555555544220 0222222 224555566666666666666665533 24555556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 342 LINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTN 421 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 421 (638)
+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-------------------------------------~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-------------------------------------SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-------------------------------------SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHHHcC
Confidence 6666666666666666665554421 123344555566666666
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
++++|...+++..+.. +.+...+..+... . .......+...+.+.|++++|...++
T Consensus 203 ~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~ 258 (359)
T 3ieg_A 203 DHELSLSEVRECLKLD-QDHKRCFAHYKQV-----------------K------KLNKLIESAEELIRDGRYTDATSKYE 258 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-ccchHHHHHHHHH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666543 3333322211100 0 01112233555666777777777777
Q ss_pred HHHhCCCCCC-H----hhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006624 502 EMKKLRCKPD-V----YTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 502 ~m~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
++.+.. |+ . ..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.|+++.+.
T Consensus 259 ~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 259 SVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 766543 33 2 224446667777777777777777777642 235667777777777777777777777777754
Q ss_pred CCCCC-HHHHHHHHHHHHh
Q 006624 577 EIKPD-AVSYNTILGCLSR 594 (638)
Q Consensus 577 ~~~p~-~~~~~~l~~~~~~ 594 (638)
.|+ ...+..+..+...
T Consensus 336 --~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 336 --NENDQQIREGLEKAQRL 352 (359)
T ss_dssp --CTTCHHHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHHH
Confidence 333 4455555555443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-17 Score=166.36 Aligned_cols=352 Identities=14% Similarity=0.087 Sum_probs=218.2
Q ss_pred CHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCC
Q 006624 159 GPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPD 230 (638)
Q Consensus 159 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 230 (638)
++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~ 110 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----L 110 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----C
Confidence 44555555555555 555555555555555442 44555555555555 555555555555555532 3
Q ss_pred HHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHH
Q 006624 231 TVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 231 ~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~ 302 (638)
...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3444445555544 455555555555555543 44445555555554 455555555555555442 444
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhHH
Q 006624 303 TYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 303 ~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
.+..+...|.. .+++++|..+|++..+.| +...+..+...|.. .+++++|..+|++.
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a------------ 249 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS------------ 249 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH------------
Confidence 45555555544 455555555555555442 33444444444443 44455555554444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 375 NTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLIN 450 (638)
Q Consensus 375 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 450 (638)
.+.| +...+..+...|.. .++.++|+.+|++..+.+ ++.++..+..
T Consensus 250 ------------------------~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 250 ------------------------AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp ------------------------HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred ------------------------HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 3332 33344455555555 678888888888877654 4566777777
Q ss_pred HHHcc-----CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 451 GYGKA-----KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG---RLSDAVDLFNEMKKLRCKPDVYTYNALMSGM 522 (638)
Q Consensus 451 ~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 522 (638)
.|... ++.++|...+++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 373 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNAL 373 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 77766 78888888888888763 4556677777777655 7788888888888764 667777888888
Q ss_pred HH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 006624 523 VR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 523 ~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 577 (638)
.. .+++++|.+.|++..+.| +...+..+...|.+ .+++++|...|++..+.+
T Consensus 374 ~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 374 LQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 87 788899999998888865 56777888888887 788999999999888765
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-16 Score=162.74 Aligned_cols=363 Identities=11% Similarity=-0.002 Sum_probs=286.6
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHH
Q 006624 109 IQFFKWAGRRRNFEHNSTTYMALIRCLDE----TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKAL 180 (638)
Q Consensus 109 ~~~f~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 180 (638)
+..+..+.... ++.++..+...|.. .+++++|+..|+...+.+ ++..+..+...|.. .+++++|.
T Consensus 27 ~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 27 LEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp HHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 45555444333 77888899999988 899999999999998854 67889999999998 89999999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHH
Q 006624 181 SIFYQIKSRKCKPTANTYNSMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAIR 252 (638)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 252 (638)
..|++..+.| +...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|.+
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 172 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----RDSGQQSMGDAYFEGDGVTRDYVMARE 172 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 9999998874 78888899999998 889999999999998864 56778888888887 789999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006624 253 LFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLF 324 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~ 324 (638)
.|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+..+...|.. .+++++|..+|
T Consensus 173 ~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~ 246 (490)
T 2xm6_A 173 WYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF 246 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 999999875 78899999999998 899999999999998875 66788888888886 88999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 325 MNMLKEGCKPDIVLINNLINVLGR----AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
++..+.| +...+..+...|.. .++.++|..+|++..+.+ +.
T Consensus 247 ~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~----------------------------- 291 (490)
T 2xm6_A 247 SQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NS----------------------------- 291 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CH-----------------------------
T ss_pred HHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CH-----------------------------
Confidence 9998864 56677778888877 788888888888876533 11
Q ss_pred CCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC---CHHHHHHHHHHHHHcC
Q 006624 401 NGVLPSPFTYSILIDGFCKT-----NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK---RYEAANELFLELKEYC 472 (638)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~ 472 (638)
..+..+...|... +++++|+..+++..+.+ +...+..+...|...| +.++|.+.|++..+.
T Consensus 292 -------~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 292 -------DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp -------HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred -------HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 2222333344443 67777777777777654 4456666666666655 677777777777775
Q ss_pred CCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 006624 473 GCSSARVYAVMIKHFGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDG 542 (638)
Q Consensus 473 ~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 542 (638)
.+...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.+
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 346677777777777 778888888888877754 46667777777777 788888888888888765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-17 Score=170.79 Aligned_cols=431 Identities=10% Similarity=0.080 Sum_probs=294.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC
Q 006624 148 IQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+++.++.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 44444432 567888888888 477899999999999998874 3378889999999999999999999999998865
Q ss_pred CCCHHHHHHHHHHH-HccCChHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHH
Q 006624 228 FPDTVTYSALISAF-GKLGRDISAIR----LFDEMKEN-GLQP-TAKIYTTLVSIYFK---------LGEVEKALGLVQE 291 (638)
Q Consensus 228 ~~~~~~~~~l~~~~-~~~g~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~ 291 (638)
|+...|...+... ...|+.++|.+ +|+...+. |..| +...|...+....+ .|++++|..+|++
T Consensus 77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~ 155 (530)
T 2ooe_A 77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQR 155 (530)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHH
Confidence 6777777766533 35677777665 66666543 5443 46677777776654 6788888888888
Q ss_pred HHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH------H
Q 006624 292 MKGKGCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKME------A 364 (638)
Q Consensus 292 m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~ 364 (638)
.++. +..+ ...|..........|. .+...++. .+.++++.|..+++.+. +
T Consensus 156 al~~-P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 156 GCVN-PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp HTTS-CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhc-hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhc
Confidence 8873 2111 2233322221111110 01111110 12334555555555421 1
Q ss_pred CC---CCCC--------HhHHHHHHHHHHhc----CCh---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-------
Q 006624 365 LQ---CKPN--------VVTYNTVIKSLFES----KAP---ASEASAWFEKMKANGVLPSPFTYSILIDGFCK------- 419 (638)
Q Consensus 365 ~~---~~p~--------~~~~~~ll~~~~~~----~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 419 (638)
.. +.|+ ...|...+...... ++. ...+...|++.... .+.+...|..++..+.+
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhh
Confidence 11 1232 13444444322221 111 12234566666654 24467788888887775
Q ss_pred cCCHH-------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHHhcC
Q 006624 420 TNRVE-------KAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS-ARVYAVMIKHFGKCG 491 (638)
Q Consensus 420 ~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 491 (638)
.|+++ +|..++++..+.-.|.+...+..++..+.+.|++++|..+|+++.+.. +.+ ..+|...+..+.+.|
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhc
Confidence 68887 899999999873236678899999999999999999999999999852 223 358999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSG-MVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIF 570 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 570 (638)
++++|..+|++..+.. +.+...|...... +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|
T Consensus 371 ~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 9999999999998753 2222233222222 336899999999999999863 336889999999999999999999999
Q ss_pred HHhhhCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 571 TKMQHSE-IKPD--AVSYNTILGCLSRAGMFEEAARLMKDMNAK 611 (638)
Q Consensus 571 ~~m~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 611 (638)
++....+ ..|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 449 ~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 449 ERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998753 2332 457888888888999999999999998854
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3e-18 Score=167.98 Aligned_cols=301 Identities=11% Similarity=-0.026 Sum_probs=216.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHH
Q 006624 156 CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYS 235 (638)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 235 (638)
.+.++..+...+..+...|++++|..+|+++.+..+. +...+..++..+...|++++|...++++.+..+ .+...+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 94 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWF 94 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHH
Confidence 3455667777778888888888888888888766433 556666777778888888888888888887665 5667778
Q ss_pred HHHHHHHccC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 236 ALISAFGKLG-RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 236 ~l~~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
.+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|.+.++++.+..+. +...+..+...+...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 8888888888 8888888888887753 335677888888888888888888888888776544 456666688888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
|++++|...++++.+.... +..++..+...+...|++++|...++++.+.... .++
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------------~~~-------- 228 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA---------------IGN-------- 228 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---------------TSC--------
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh---------------ccc--------
Confidence 8888888888888876433 6778888888888888888888888877542100 000
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
....+.+...+..+..++.+.|++++|...+++..+.. +.+..++..+...+.+.|++++|.+.++++.+. .+
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p 301 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL-RR 301 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT-CS
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc-CC
Confidence 00112334567777888888888888888888877764 556667777777777777777777777777664 23
Q ss_pred CcHHHHHHHHHHH-HhcCC
Q 006624 475 SSARVYAVMIKHF-GKCGR 492 (638)
Q Consensus 475 ~~~~~~~~li~~~-~~~g~ 492 (638)
.+...+..+..++ ...|+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC
T ss_pred CchHHHHHHHHHHHHHhCc
Confidence 4555666666655 33443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-18 Score=167.17 Aligned_cols=295 Identities=12% Similarity=-0.012 Sum_probs=245.6
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Q 006624 121 FEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNS 200 (638)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 200 (638)
.+.+...+..++..+...|++++|..+++++++.. +.+...+..++..+.+.|++++|...++++.+..+. +...|..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence 34456678889999999999999999999998864 556677888889999999999999999999887443 7888999
Q ss_pred HHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 201 MILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
+...+...| ++++|.+.|+++....+ .+...|..+...+...|++++|.+.++++.+.. +.+...+..+...+...
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHH
Confidence 999999999 99999999999998775 567889999999999999999999999999874 33567788899999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCC
Q 006624 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--------CKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~ 351 (638)
|++++|.+.+++..+..+. +...+..+...+...|++++|...++++.+.. ...+..++..+...|.+.|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 9999999999999988654 78899999999999999999999999998742 13346788899999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 431 (638)
+++|...++++.+.. +.+...+..+..++.+.|++++|...++
T Consensus 252 ~~~A~~~~~~a~~~~-------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 252 YAEALDYHRQALVLI-------------------------------------PQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHHHHHHS-------------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-------------------------------------ccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 999999998876532 1234556677788888888999998888
Q ss_pred HHHhCCCCCCHhhHHHHHHHH-HccCCHH
Q 006624 432 EMEEKGFPPCPAAYCSLINGY-GKAKRYE 459 (638)
Q Consensus 432 ~~~~~~~~~~~~~~~~li~~~-~~~g~~~ 459 (638)
++.+.. +.+..++..+..++ ...|+.+
T Consensus 295 ~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 295 TALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 888765 66777888887777 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-16 Score=165.57 Aligned_cols=425 Identities=12% Similarity=0.078 Sum_probs=277.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+..+|..++. +.+.|++++|..+|+.++.. .|.+...|...+..+.+.|++++|..+|+++... .|+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 458889999998 47899999999999999985 3667889999999999999999999999999987 4688888877
Q ss_pred HHHH-HhcCCHhHHHH----HHHHHHhC-CCCCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHCCCCCCH
Q 006624 202 ILML-MQEGYYEKIHE----LYNEMCNE-GNCFPDTVTYSALISAFGK---------LGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 202 ~~~~-~~~g~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
+... -..|++++|.+ +|+..+.. |...++...|...+....+ .|+++.|..+|++..+.......
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7543 34677776665 77777653 3222456778777776654 68899999999999883111112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHcC---CCCC--
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM------LKEG---CKPD-- 335 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~------~~~~---~~p~-- 335 (638)
..|..........|. .+...++. ...+++..|..++.+. .+.. +.|+
T Consensus 166 ~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 333322221100110 00001110 0123344444444431 1111 1222
Q ss_pred ------HHHHHHHHHHHHcc----CCH----HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh-------cCChH------
Q 006624 336 ------IVLINNLINVLGRA----GRL----EDALKLFNKMEALQCKPNVVTYNTVIKSLFE-------SKAPA------ 388 (638)
Q Consensus 336 ------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~~------ 388 (638)
...|...+...... ++. ..+..+|+++.... +.+...|..+...+.. .|+..
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 13344433322221 121 35566666665532 1244555555555443 45544
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-hhHHHHHHHHHccCCHHHHHHHHHH
Q 006624 389 SEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCP-AAYCSLINGYGKAKRYEAANELFLE 467 (638)
Q Consensus 389 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 467 (638)
+.+..+++.....-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|++++|.++|++
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 2336677776652234457778888888888899999999999888863 3343 5788888888888889999999998
Q ss_pred HHHcCCCCcHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CC
Q 006624 468 LKEYCGCSSARVYAVMIKH-FGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGC-VP 545 (638)
Q Consensus 468 ~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p 545 (638)
+.+.. +.+...|...+.. +...|++++|..+|++..+.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~ 459 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCG
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCH
Confidence 88752 2233333332222 346889999999999887753 33577888888888888999999999999888632 22
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006624 546 D--INSHNIILNGLAKSGGPKRAMEIFTKMQHS 576 (638)
Q Consensus 546 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 576 (638)
+ ...|...+......|+.+.+..+++++.+.
T Consensus 460 ~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 460 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 457777788888889999999999888763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.8e-18 Score=170.12 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=78.3
Q ss_pred hCCCHHHHHH-HHHHHhhCCCC---CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 172 KAKMVNKALS-IFYQIKSRKCK---PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
-.|++++|.. .|++....... .+...+..+...+.+.|++++|+..|+++.+..+ .+...+..+...+...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcCH
Confidence 3467777777 66655443211 1345566777777777777777777777777654 5666777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++....+
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 163 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP 163 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 77777777777653 33666777777777777777777777777776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.81 E-value=7.1e-15 Score=159.25 Aligned_cols=385 Identities=14% Similarity=0.129 Sum_probs=297.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..++.--...+++|...|.+.+|+++++++.-.+ +.-+....+.++.+..+. +..+..+..++... .+ .
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-----~d---~ 1052 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-----YD---A 1052 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-----cc---H
Confidence 3456666788899999999999999999998432 123567777788777777 55677776666542 22 3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 235 SALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..+...+...|.+++|..+|++.. -.....+.++. ..|++++|.++.++.. +..+|..+..++...
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~ 1118 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK 1118 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhC
Confidence 447788889999999999999853 12222333332 7889999999998652 678899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAW 394 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 394 (638)
|++++|+..|.+. -|...|..++.++.+.|++++|.+.+....+.. ++....+.+..+|.+.++..+ ...+
T Consensus 1119 G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rlee-le~f 1189 (1630)
T 1xi4_A 1119 GMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAE-LEEF 1189 (1630)
T ss_pred CCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHH-HHHH
Confidence 9999999999764 378889999999999999999999999887755 333333357778888876553 2332
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 006624 395 FEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC 474 (638)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 474 (638)
.. .++...|..+.+.|...|++++|..+|... ..|..++.+|++.|++++|.+.+++.
T Consensus 1190 ----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------ 1247 (1630)
T 1xi4_A 1190 ----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------ 1247 (1630)
T ss_pred ----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------
Confidence 22 356677888999999999999999999985 47999999999999999999999987
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIIL 554 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 554 (638)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++..+... +-....|+-+.
T Consensus 1248 ~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELa 1321 (1630)
T 1xi4_A 1248 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELA 1321 (1630)
T ss_pred CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHH
Confidence 456899999999999999999998776532 356667789999999999999999998888653 33455676677
Q ss_pred HHHHhc--CCHHHHHHHHHHhhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 006624 555 NGLAKS--GGPKRAMEIFTKMQHSEIKP------DAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 555 ~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
..|++. ++..++.++|..-. ++.| +...|.-++-.|.+.|+++.|..
T Consensus 1322 iLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 776654 45666666666443 3333 56779999999999999999983
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.3e-18 Score=168.56 Aligned_cols=305 Identities=10% Similarity=-0.017 Sum_probs=213.6
Q ss_pred ccCChHHHHH-HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 243 KLGRDISAIR-LFDEMKENGL---QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 243 ~~g~~~~A~~-~~~~m~~~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
..|++++|.+ .+++..+... ..+...+..+...+.+.|++++|...++++.+..+. +...+..+...+...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHH
Confidence 3466777776 6665543211 113455777777888888888888888888776544 6777778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006624 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKM 398 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 398 (638)
+|...|+++.+..+. +..++..+...|...|++++|.+.++++.... |+........... .. .
T Consensus 116 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~-------~ 178 (368)
T 1fch_A 116 LAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG-------G 178 (368)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------
T ss_pred HHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-------h
Confidence 888888888776433 67778888888888888888888888887744 3222111100000 00 0
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 006624 399 KANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS 476 (638)
Q Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 476 (638)
..+ ...+..+.. +...|++++|...++++.+.. +. +..++..+...+.+.|++++|...++++.+. .+.+
T Consensus 179 ----~~~-~~~~~~~~~-~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~ 250 (368)
T 1fch_A 179 ----AGL-GPSKRILGS-LLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPND 250 (368)
T ss_dssp ------------CTTHH-HHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTC
T ss_pred ----hcc-cHHHHHHHH-HhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CcCC
Confidence 000 011122233 338889999999999988765 44 6788899999999999999999999998886 4456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------C
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP----------D 546 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~ 546 (638)
..++..+...+...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.+..... .
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 329 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence 7889999999999999999999999988753 3457788889999999999999999999988642111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 547 INSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
..+|..+..++...|++++|..++++..
T Consensus 330 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 330 ENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred hHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 6889999999999999999998887544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.3e-14 Score=155.36 Aligned_cols=440 Identities=10% Similarity=0.114 Sum_probs=304.9
Q ss_pred CChHHHHHHhccccchHHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHH
Q 006624 90 VDHRLVHQVLNIDVEINVKIQFFKWAGR--RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSE 165 (638)
Q Consensus 90 ~~~~~~~~vl~~~~~~~~a~~~f~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 165 (638)
-++.+=..||.-.+ ..-.++.+|... -+. ..++.--...+++|...|++.+|+.+++..+-.+. ..+....+.
T Consensus 951 ~d~~lW~~vl~~~n--~~RR~Lidqv~a~aL~e-~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 951 KDPELWGSVLLESN--PYRRPLIDQVVQTALSE-TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred cCHHHHHHHhcCCc--HHHHHHHHHHHHhhccc-ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 45555555553322 233456667422 111 22444445678889999999999999999984421 134566677
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++....+. +..+..+...++... + ..-+...+...|.+++|.++|++.. ......+.++. ..|
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~ 1090 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIG 1090 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHh
Confidence 77777776 556666666665432 2 3347788888999999999999962 12222333333 678
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFM 325 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 325 (638)
++++|.++.++. -+..+|..+..++.+.|++++|++.|.+. -|...|..++..+.+.|++++|.++|.
T Consensus 1091 nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1091 NLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred hHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 899999988865 25788889999999999999999999664 277888889999999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCC
Q 006624 326 NMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLP 405 (638)
Q Consensus 326 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 405 (638)
...+.. ++....+.++.+|++.+++++...+. + .++...|..+-..+...|+..+| ..+|...
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA-~~~Y~kA------- 1221 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA-KLLYNNV------- 1221 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH-HHHHHhh-------
Confidence 887764 33333445888999998888644443 1 25667777777777777777766 6776664
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006624 406 SPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485 (638)
Q Consensus 406 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 485 (638)
..|..+..++++.|++++|.+.+++. .+..+|..+..+|...|++..|......+. .+...+..++.
T Consensus 1222 --~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 1288 (1630)
T ss_pred --hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHH
Confidence 37889999999999999999999876 356888888888888888888888766432 35667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHH
Q 006624 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRA--GMIDDAYSLLRRMEEDGCVP------DINSHNIILNGL 557 (638)
Q Consensus 486 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~ 557 (638)
.|.+.|.+++|+.+++...... +-....|+-+...|++. ++..++.++|..-.. ++| +...|.-+.-.|
T Consensus 1289 yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY 1365 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLY 1365 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHH
Confidence 9999999999999998877654 33344566666666543 455566666654333 222 466788888888
Q ss_pred HhcCCHHHHHHHH-------------HHhhhCCCCCCHHHHHHHHHHHHhcC
Q 006624 558 AKSGGPKRAMEIF-------------TKMQHSEIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 558 ~~~g~~~~A~~~~-------------~~m~~~~~~p~~~~~~~l~~~~~~~g 596 (638)
.+.|+++.|.... ...+. -..|+..|...+.-|...+
T Consensus 1366 ~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1366 DKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 8999998887322 22221 1335666666666665555
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.6e-16 Score=160.75 Aligned_cols=151 Identities=9% Similarity=-0.038 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHH-HHHHcCCHHHHHH
Q 006624 457 RYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDV--YTYNALMS-GMVRAGMIDDAYS 533 (638)
Q Consensus 457 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~ 533 (638)
..++|...++.+.+. .+.+...+..+...|...|++++|...|++..+....+.. ..+..+.. .....|++++|+.
T Consensus 315 ~~~~A~~~~~~a~~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEA-NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHH-CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhc-CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 356777777777765 3345566777888888888888888888888775432221 12222222 2346788889999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 006624 534 LLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKG- 612 (638)
Q Consensus 534 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 612 (638)
.|++.++. .|+...... ..+.+.+++++....+ +.+..+|..+..+|...|++++|.+.|++.++.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88888874 444332221 2234455555555432 2356788889999999999999999999888643
Q ss_pred CCCCHhhH
Q 006624 613 FEYDQITY 620 (638)
Q Consensus 613 ~~p~~~~~ 620 (638)
..|+..+|
T Consensus 462 ~~p~a~~~ 469 (472)
T 4g1t_A 462 LIPSASSW 469 (472)
T ss_dssp --------
T ss_pred CCCcHhhc
Confidence 34554443
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-17 Score=162.75 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=156.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006624 265 TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 344 (638)
+...+..+...+.+.|++++|++.|+++.+..+. +..++..+...+...|++++|+..|+++.+..+. +..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 3455777778888888888888888888776544 6778888888888888888888888888876433 6778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 345 VLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVE 424 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 424 (638)
.|...|++++|...++++.+.. |+........ ......+..+...+.+.|+++
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-------------------------~~~~~~~~~l~~~~~~~g~~~ 194 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNK-------------------------KGSPGLTRRMSKSPVDSSVLE 194 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhh-------------------------ccchHHHHHHHHHHhhhhhHH
Confidence 8888889988888888887632 2211000000 012233455667778888888
Q ss_pred HHHHHHHHHHhCCCCC--CHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 425 KAHLLLEEMEEKGFPP--CPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNE 502 (638)
Q Consensus 425 ~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 502 (638)
+|...++++.+.. +. +..++..+...+...|++++|.+.++++.+. .+.+..++..+..+|...|++++|...|++
T Consensus 195 ~A~~~~~~al~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 272 (365)
T 4eqf_A 195 GVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RPEDYSLWNRLGATLANGDRSEEAVEAYTR 272 (365)
T ss_dssp HHHHHHHHHHHHS-CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888887764 33 5667777777777777777777777777665 334455666666666666666666666666
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 503 MKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 503 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
+.+.. +.+..++..+...|...|++++|...|+++.+
T Consensus 273 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 273 ALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65532 22355555555666666666666666665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-17 Score=162.68 Aligned_cols=278 Identities=10% Similarity=-0.052 Sum_probs=217.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|...|+.++... +.+..++..+...+.+.|++++|+..|+++.+..+ .+..+|..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 44568899999999999999999999998864 66788999999999999999999999999988753 37899999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHH----------HHHHHHHHHccCChHHHHHHHHHHHHCCCC-CCHHHHHHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVT----------YSALISAFGKLGRDISAIRLFDEMKENGLQ-PTAKIYTTL 272 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~l 272 (638)
.|...|++++|++.|+++.+..+ .+... +..+...+...|++++|.+.++++.+.... ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNP--KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCH--HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCc--cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999988653 22222 334578899999999999999999987422 168899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
...+.+.|++++|++.++++.+..+. +..+|..+...+...|++++|...|+++++..+. +..++..+..+|.+.|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence 99999999999999999999887654 7889999999999999999999999999987433 688899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 353 EDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEE 432 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 432 (638)
++|...|+++.+.. |+...- .. ......+...|..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~~--~~~~~~-------------~~----------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQ--RKSRNQ-------------QQ----------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHH--HCC-----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--cccCCC-------------cc----------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987632 111000 00 000011345677777778888888877776654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-15 Score=158.14 Aligned_cols=151 Identities=15% Similarity=0.024 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH--HHHHHHHH-HHHhcCCHHHHHH
Q 006624 422 RVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA--RVYAVMIK-HFGKCGRLSDAVD 498 (638)
Q Consensus 422 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~ 498 (638)
.+++|...+++..+.. +.+..++..+...+...|++++|.+.|+++.+....+.. ..+..+.. .+...|+.++|+.
T Consensus 315 ~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~ 393 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH 393 (472)
T ss_dssp HHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred hHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3567777777777665 566677788888888888888888888888775433322 12222222 2346788889999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-
Q 006624 499 LFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSE- 577 (638)
Q Consensus 499 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~- 577 (638)
.|++..+. .|+...... ....+..++++.++.. +.+..+|..+...|...|++++|++.|++.++.+
T Consensus 394 ~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 394 HFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88888774 355433222 2234455666666543 3467788889999999999999999999988743
Q ss_pred CCCCHHHH
Q 006624 578 IKPDAVSY 585 (638)
Q Consensus 578 ~~p~~~~~ 585 (638)
..|+..+|
T Consensus 462 ~~p~a~~~ 469 (472)
T 4g1t_A 462 LIPSASSW 469 (472)
T ss_dssp --------
T ss_pred CCCcHhhc
Confidence 33444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-17 Score=158.25 Aligned_cols=283 Identities=13% Similarity=0.111 Sum_probs=116.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4556677777776662 2346667777777777777777777542 45556777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 766655553 3445666677777777777777666663 245567777777777777777777777655
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHH
Q 006624 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYS 411 (638)
Q Consensus 332 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 411 (638)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+...| ...... +...+....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA-~~~~l~-----L~~~ad~l~ 211 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLA-QMCGLH-----IVVHADELE 211 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHH-HHTTTT-----TTTCHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHH-HHHHHH-----HHhCHhhHH
Confidence 25667777777777777777777766 2566777777777777766655 221111 223344455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCC------cHHHHHHH
Q 006624 412 ILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAK--RYEAANELFLELKEYCGCS------SARVYAVM 483 (638)
Q Consensus 412 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~------~~~~~~~l 483 (638)
.++..|.+.|++++|..+++...... +.....|+-+.-+|++-+ ++.+..+.|..-. ++++ +...|..+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~ 288 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAEL 288 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHH
Confidence 68888999999999999999998776 667778888888887653 4445555444211 1222 35568889
Q ss_pred HHHHHhcCCHHHHHHHH
Q 006624 484 IKHFGKCGRLSDAVDLF 500 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~ 500 (638)
...|...++++.|....
T Consensus 289 ~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 289 VFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHTTCHHHHHHHH
T ss_pred HHHHHhhchHHHHHHHH
Confidence 99999999999888744
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-16 Score=155.70 Aligned_cols=289 Identities=13% Similarity=0.145 Sum_probs=126.7
Q ss_pred HHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 006624 95 VHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 95 ~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
+..++...++.+.|.+|+... +++.+|..++.++.+.|++++|++.|.. .+|+..|..++..+...|
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCC
Confidence 444555667789999999844 2335999999999999999999999964 367789999999999999
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
++++|+..++...+. .+++.+.+.++.+|.+.|+++++.++++ + |+..+|..++..|...|++++|..+|
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~---pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-----G---PNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-----C---C----------------CTTTHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----C---CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999977776664 4567889999999999999999988874 1 77789999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006624 255 DEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP 334 (638)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 334 (638)
..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+. .
T Consensus 146 ~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~ 205 (449)
T 1b89_A 146 NNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----V 205 (449)
T ss_dssp HHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----T
T ss_pred HHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----h
Confidence 976 47999999999999999999999988 288999999999999999999976655432 2
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCCCC------CH
Q 006624 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA-NGVLP------SP 407 (638)
Q Consensus 335 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~------~~ 407 (638)
.+.-...++..|.+.|.+++|..+++...... +-....|+.+--.+.+ -++... .+.++.... -+++| +.
T Consensus 206 ~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k-y~p~k~-~ehl~~~~~~ini~k~~~~~~~~ 282 (449)
T 1b89_A 206 HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK-FKPQKM-REHLELFWSRVNIPKVLRAAEQA 282 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT-TCHHHH-HHHHHHHSTTSCHHHHHHHHHTT
T ss_pred CHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh-cCHHHH-HHHHHHHHHHhcCcHHHHHHHHH
Confidence 44445578999999999999999999987654 3344455555333332 233222 222222221 12222 34
Q ss_pred HHHHHHHHHHHhcCCHHHHHHH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
..|..+...|.+.++++.|...
T Consensus 283 ~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 283 HLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHH
Confidence 5677888888888888888663
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-18 Score=182.20 Aligned_cols=152 Identities=18% Similarity=0.173 Sum_probs=118.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006624 475 SSARVYAVMIKHFGKCGRLSDAVDLFNEMKK---LRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHN 551 (638)
Q Consensus 475 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 551 (638)
.-..+||++|++||+.|++++|..+|++|.+ .|+.||++|||+||.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456889999999999999999999887754 4788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HhhHHHHH
Q 006624 552 IILNGLAKSGGP-KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD------QITYSSIL 624 (638)
Q Consensus 552 ~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~ 624 (638)
++|.++|+.|+. ++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ .-++.|+ ..|...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999998874 78889999999989999999999888766554 344444444 3355554 34555555
Q ss_pred HHHhccC
Q 006624 625 EAVGKVD 631 (638)
Q Consensus 625 ~~~~~~g 631 (638)
+.+.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=4.9e-16 Score=151.91 Aligned_cols=274 Identities=10% Similarity=0.007 Sum_probs=134.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+......+...|++++|...|+++.+..+. +..++..+...+...|++++|.+.|+++....+ .+...+..+...+.
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHT 100 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CCHHHHHHHHHHHH
Confidence 344444455555555555555555443222 444444455555555555555555555544432 33444444444444
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL-IK-GLGRAGRVEDA 320 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A 320 (638)
..|++++|.+.++++.+.. +.+...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 4444444444444444431 1111111111000 0000011111 11 25556666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
...++++.+.... +..++..+...+...|++++|.+.++++.+..
T Consensus 158 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---------------------------------- 202 (327)
T 3cv0_A 158 RTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR---------------------------------- 202 (327)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------------------------
Confidence 6666666655332 55566666666666666666666666554311
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-----
Q 006624 401 NGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCS----- 475 (638)
Q Consensus 401 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----- 475 (638)
+.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+.....
T Consensus 203 ---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 278 (327)
T 3cv0_A 203 ---PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTG 278 (327)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC---
T ss_pred ---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccc
Confidence 1233445556666666666666666666666553 4455566666666666666666666666665532211
Q ss_pred ------cHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 476 ------SARVYAVMIKHFGKCGRLSDAVDLFN 501 (638)
Q Consensus 476 ------~~~~~~~li~~~~~~g~~~~A~~~~~ 501 (638)
+...+..+..++.+.|++++|..+++
T Consensus 279 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 279 EASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp --CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred cchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455555555555555555555554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=5.9e-16 Score=151.29 Aligned_cols=277 Identities=9% Similarity=-0.014 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+..+ .+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHH
Confidence 3467788899999999999999999998864 56788999999999999999999999999988743 378899999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH--------------HH-HHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL--------------IS-AFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+...|++++|.+.|+++....+ .+...+..+ .. .+...|++++|.+.++++.+.. +.+..++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 175 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH 175 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTST--TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence 9999999999999999998765 333333333 22 3778889999999999998864 3478889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA 349 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 349 (638)
..+...+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...|+++.+.... +..++..+...|.+.
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHh
Confidence 99999999999999999999999887544 6888999999999999999999999999887433 678888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 350 GRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
|++++|.+.++++.+.. |+.. ..... .....+...|..+..++.+.|++++|..+
T Consensus 254 g~~~~A~~~~~~a~~~~--~~~~-------------~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 308 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQ--VGGT-------------TPTGE----------ASREATRSMWDFFRMLLNVMNRPDLVELT 308 (327)
T ss_dssp TCHHHHHHHHHHHHHHH--TTSC-------------C---------------CCTHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--Cccc-------------ccccc----------chhhcCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999998876532 1100 00000 00011345666777778888888888877
Q ss_pred HHHH
Q 006624 430 LEEM 433 (638)
Q Consensus 430 ~~~~ 433 (638)
+++.
T Consensus 309 ~~~~ 312 (327)
T 3cv0_A 309 YAQN 312 (327)
T ss_dssp TTCC
T ss_pred HHHH
Confidence 7643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-15 Score=145.53 Aligned_cols=150 Identities=10% Similarity=0.066 Sum_probs=78.8
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
....|++..|+..+++.....+.........+.++|...|++++|+..++. .. .|+..++..+...+...|+.++
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~--~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS--APELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS--CHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC--ChhHHHHHHHHHHHcCCCcHHH
Confidence 334566666666655554432211123334455666666666666654433 11 1455555555566666666666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 250 AIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 250 A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666655544323 344445555555566666666655554 2344555555555555555555555555555
Q ss_pred Hc
Q 006624 329 KE 330 (638)
Q Consensus 329 ~~ 330 (638)
+.
T Consensus 158 ~~ 159 (291)
T 3mkr_A 158 DQ 159 (291)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=180.19 Aligned_cols=119 Identities=17% Similarity=0.259 Sum_probs=109.6
Q ss_pred CCHhhHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 006624 510 PDVYTYNALMSGMVRAGMIDDAYSLLRRMEE---DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYN 586 (638)
Q Consensus 510 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 586 (638)
.-..|||+||++|++.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 006624 587 TILGCLSRAGM-FEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 587 ~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
++|.++++.|+ .++|.++|++|.+.|+.||..||++++.++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 99999999998 4789999999999999999999995544443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-16 Score=146.90 Aligned_cols=252 Identities=13% Similarity=0.071 Sum_probs=138.3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGP--SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
-....|+++.|+..++.... ..|+. .....+.++|...|++++|+..++.. ..|+..++..+...+...|+.
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcH
Confidence 34445666666666654432 12221 23344556666666666666544331 234555666666666666666
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.++++...+..+.+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.+++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666655431113445555555666666666666666655 24556666666666666666666666666
Q ss_pred HHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCC
Q 006624 292 MKGKGCALTVYT--YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKP 369 (638)
Q Consensus 292 m~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 369 (638)
+.+..+. +... ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++..... -
T Consensus 156 ~~~~~p~-~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-~ 232 (291)
T 3mkr_A 156 MQDQDED-ATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-G 232 (291)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHhhCcC-cHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-C
Confidence 6655322 1111 1112233334466666666666666652 33566666666666666666666666666655331 1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 006624 370 NVVTYNTVIKSLFESKAPASEASAWFEKMKA 400 (638)
Q Consensus 370 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 400 (638)
+..++..+...+...|+..+++..+++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444555555555555554444455554443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=137.19 Aligned_cols=196 Identities=16% Similarity=0.099 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
+..+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|+..|++..+..+ .+...+..+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~ 81 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP--RYLGGYMVLSE 81 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHH
Confidence 334444444444444444444444444443222 344444444444444444444444444444433 33444444444
Q ss_pred HHHcc-----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006624 240 AFGKL-----------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELI 308 (638)
Q Consensus 240 ~~~~~-----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 308 (638)
.+... |++++|++.+++..+.. +-+...+..+...+...|++++|+..|++..+.+ .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 44444 55555555555554432 1234444555555555555555555555554444 3444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006624 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKM 362 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 362 (638)
..+...|++++|+..|++.++..+. +...+..+...+.+.|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5555555555555555555544322 4444455555555555555555555443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.6e-15 Score=134.61 Aligned_cols=200 Identities=14% Similarity=0.078 Sum_probs=166.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+++...|..+...+.+.|++++|...++..++.. +.++..+..+...+.+.|++++|+..|++..+..+. +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHH
Confidence 5677889999999999999999999999998864 667889999999999999999999999999887544 78899999
Q ss_pred HHHHHhc-----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006624 202 ILMLMQE-----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYT 270 (638)
Q Consensus 202 ~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 270 (638)
..++.+. |++++|+..|++..+..+ .+...+..+...+...|++++|+..|++..+.. .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 9999999 999999999999999876 578889999999999999999999999999887 6889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 271 TLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.+...|...|++++|+..|++..+..+. +...+..+...+...|++++|...|++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999987655 78889999999999999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-14 Score=136.17 Aligned_cols=226 Identities=10% Similarity=0.010 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCC--C----HHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKP--T----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 198 (638)
...|..+...+...|++++|...++.+++.. .++.++..+...+...|++++|...|++..+..... + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4678899999999999999999999999876 788999999999999999999999999987753221 2 6889
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...+...|++++|++.|+++.... |+. ..+.+.|++++|.+.++++.+.. +.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH---RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC---chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH
Confidence 999999999999999999999999865 443 34666788999999999998863 3356788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 006624 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 358 (638)
.|++++|.+.+++..+..+. +...+..+...+...|++++|...|++.++.... +..++..+..++.+.|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999987654 7889999999999999999999999999987543 688899999999999999999999
Q ss_pred HHHHHHC
Q 006624 359 FNKMEAL 365 (638)
Q Consensus 359 ~~~~~~~ 365 (638)
++...+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998763
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-15 Score=149.46 Aligned_cols=346 Identities=13% Similarity=0.049 Sum_probs=152.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH---hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY---EKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+...+.+.|++++|.+.|++..+.| ++.++..+...|...|+. ++|++.|++..+. +...+..+...+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 3444555556666666666555443 333444455555555555 5666666655542 2233444444333
Q ss_pred ccC-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 243 KLG-----RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE---KALGLVQEMKGKGCALTVYTYTELIKGLGRA 314 (638)
Q Consensus 243 ~~g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 314 (638)
..| +.++|.+.|++..+.|. ...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 333 45566666666665442 224555555555444322 2333333333333 233444555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHH
Q 006624 315 GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEA 391 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 391 (638)
+.++++........+.-...+...+..|...|.+.| +.++|.+.|++..+.|.. +..
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~------------------- 214 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQ------------------- 214 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHH-------------------
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHH-------------------
Confidence 544433333222222111112226666666666677 666777776666654421 111
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH-H--HccCCHHHHHHH
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKT----NRVEKAHLLLEEMEEKGFPPCPAAYCSLING-Y--GKAKRYEAANEL 464 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~ 464 (638)
.+..+...|... +++++|+.+|++.. . .++..+..+... + ...++.++|.+.
T Consensus 215 -----------------~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 215 -----------------RVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp -----------------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred -----------------HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 112222222221 34555555555544 2 233444444443 2 334555555555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHH
Q 006624 465 FLELKEYCGCSSARVYAVMIKHFGKCG-----RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLL 535 (638)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~ 535 (638)
|++..+.| +...+..+...|. .| ++++|...|++.. . .+...+..|...|.. ..++++|...|
T Consensus 274 ~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 274 LDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 55555443 3444444444444 33 5566666665554 2 244444445444443 22666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 006624 536 RRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSE 577 (638)
Q Consensus 536 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 577 (638)
++..+.|. ......|...|.. ..++++|...|+...+.|
T Consensus 346 ~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 346 LTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 66666542 2233344444442 235666666666666554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-14 Score=144.80 Aligned_cols=215 Identities=12% Similarity=0.104 Sum_probs=138.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV---NKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+...+.+.|++++|.+.|+.....| ++..+..+...|...|+. ++|...|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677888999999999999988765 344556677777778888 8999999998864 6677777887666
Q ss_pred hcC-----CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 207 QEG-----YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD---ISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 207 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+ ++++|++.|++....+. ++ .+..|...|...+.. .++.+.+....+.| +...+..|...|..
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~--~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGE--GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRT 153 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTC--SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCC--HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 665 78899999999998765 44 666777777766544 34555666665554 46677788888888
Q ss_pred cCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--
Q 006624 279 LGEV----EKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRA-- 349 (638)
Q Consensus 279 ~g~~----~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 349 (638)
.+.+ +++..+++..... +...+..+...|...| +.++|+..|++..+.|.. +...+..+...|...
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATL 228 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGG
T ss_pred CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCC
Confidence 8854 4444445444433 3337888888888899 999999999999998754 666666777777655
Q ss_pred --CCHHHHHHHHHHHH
Q 006624 350 --GRLEDALKLFNKME 363 (638)
Q Consensus 350 --g~~~~A~~~~~~~~ 363 (638)
+++++|.++|++..
T Consensus 229 ~~~d~~~A~~~~~~aa 244 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIA 244 (452)
T ss_dssp SSCCHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHc
Confidence 78889998888875
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.6e-13 Score=125.86 Aligned_cols=200 Identities=10% Similarity=-0.024 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
.++..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|.+.|+++....+ .+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~ 85 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChHHHHHHHHH
Confidence 3444445555555555555555555544322 2344555555555555555555555555555443 344455555555
Q ss_pred HHcc-CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 241 FGKL-GRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 241 ~~~~-g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
+... |++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence 5555 55555555555555421122 2345555555555666666666666555554332 4555555566666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+|...++++.+.....+...+..+...+...|+.+.|..+++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 6666666655543313455555555555666666666666665544
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1.4e-13 Score=128.84 Aligned_cols=202 Identities=9% Similarity=0.010 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...+++++... +.+..++..+...+.+.|++++|...|+++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 5667777777777777777777777776643 445666677777777777777777777776655322 56666667777
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.|+++...+..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766611111244556666666666666666666666666543 2345566666666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
|.+.++++.+..+. +...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666554332 4555555666666666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-12 Score=124.21 Aligned_cols=224 Identities=13% Similarity=0.017 Sum_probs=198.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
++.++..+...+...|++++|...|+...+ +.++.++..+...|.. .+++++|...|++..+.+ +..++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 677888999999999999999999999988 4466788889999999 999999999999998875 788999
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006624 200 SMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK----LGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|++.|++..+.+ +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 99999999 999999999999998863 67788889999998 999999999999999875 6778888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 272 LVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 272 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
+...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 8999988 999999999999998874 56788888889998 999999999999999874 367788888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 006624 344 NVLGR----AGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 344 ~~~~~----~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+ .+++++|.+.|++..+.+
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99988 899999999999988755
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-13 Score=129.87 Aligned_cols=95 Identities=12% Similarity=0.128 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK--PD----IVLINN 341 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~~~ 341 (638)
.+..+...+...|++++|++.+++..+.. .+...+..+...+...|++++|...++++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444555555555555555544444 34444555555555555555555555554442111 11 344455
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 006624 342 LINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 342 l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+...+...|++++|...++++..
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh
Confidence 55555555555555555555443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-13 Score=135.06 Aligned_cols=245 Identities=10% Similarity=0.072 Sum_probs=207.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
+..+|+.+..++.+.|++++|+..++.++... +-+..+|+.+..++.+.|+ +++|+..|+++.+..+. +...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 45788889999999999999999999999864 5678899999999999997 99999999999988655 889999999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCC
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK-LGE 281 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~ 281 (638)
.++...|++++|+..|++++...+ .+...|..+..++.+.|++++|++.++++++.. +-+...|+.+..++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP--~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999886 688999999999999999999999999999875 3478899999999999 666
Q ss_pred HHHH-----HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC----
Q 006624 282 VEKA-----LGLVQEMKGKGCALTVYTYTELIKGLGRAG--RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAG---- 350 (638)
Q Consensus 282 ~~~A-----~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---- 350 (638)
.++| ++.+++.+...+. +...|..+...+...| ++++|++.+.++ +. ...+...+..++.+|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5889898887665 7889999999999888 689999999888 43 3346788889999998874
Q ss_pred -----CHHHHHHHHHHH-HHCCCCCCHh-HHHHHH
Q 006624 351 -----RLEDALKLFNKM-EALQCKPNVV-TYNTVI 378 (638)
Q Consensus 351 -----~~~~A~~~~~~~-~~~~~~p~~~-~~~~ll 378 (638)
..++|.++++++ .+. .|... .|..+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~ 360 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIG 360 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHH
Confidence 258999999998 653 35443 343333
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-13 Score=131.47 Aligned_cols=241 Identities=11% Similarity=0.016 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANTYNSMI 202 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 202 (638)
...+......+...|++++|...+++.++.. +.+...+..+...+...|++++|+..|+++.+.... ....+|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3456677888999999999999999998854 455668889999999999999999999999884322 2244588999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV 282 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 282 (638)
..+...|++++|++.|++..+..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDT--TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776 567889999999999999999999999998763 44677788888344455699
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR---VEDAYGLFMNMLKEG-CKPD------IVLINNLINVLGRAGRL 352 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~ 352 (638)
++|.+.++++.+..+. +...+..+...+...|+ +++|...++++.+.. ..|+ ..++..+...|.+.|++
T Consensus 159 ~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 159 VKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999987654 57788888888888888 888999998887642 1122 25778888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHh
Q 006624 353 EDALKLFNKMEALQCKPNVV 372 (638)
Q Consensus 353 ~~A~~~~~~~~~~~~~p~~~ 372 (638)
++|.+.++++.+.. |+..
T Consensus 238 ~~A~~~~~~al~~~--p~~~ 255 (272)
T 3u4t_A 238 VKADAAWKNILALD--PTNK 255 (272)
T ss_dssp HHHHHHHHHHHHHC--TTCH
T ss_pred HHHHHHHHHHHhcC--ccHH
Confidence 99999999998744 5443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.5e-13 Score=126.09 Aligned_cols=211 Identities=10% Similarity=0.021 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
+..+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.|+++.+..+ .+...+..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS--RNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHH
Confidence 45677888889999999999999999887643 3788899999999999999999999999988765 57888999999
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE 318 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 318 (638)
.+...|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998733334 5677888999999999999999999999887644 6888899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 006624 319 DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTV 377 (638)
Q Consensus 319 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 377 (638)
+|...++++.+... .+...+..+...+...|+.++|.+.++.+.+.. |+...+..+
T Consensus 193 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~ 248 (252)
T 2ho1_A 193 PARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHHHH
T ss_pred HHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 99999999988644 477788888999999999999999999998754 555444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=4.9e-14 Score=131.07 Aligned_cols=202 Identities=10% Similarity=0.073 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
...+|..+...+...|++++|...++++++.. +.+..++..+...+.+.|++++|...|+++.+... .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHH
Confidence 45667777777778888888888888777643 44667777777777788888888888877766533 26677777777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 283 (638)
.+...|++++|.+.|+++.+..+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+.+.|+++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM--ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 77777888888888877777654 466677777777777777777777777777653 335667777777777777777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 284 KALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 284 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+|.+.++++.+..+. +..++..+...+...|++++|...++++.+..
T Consensus 177 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 177 EALSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777665433 56667777777777777777777777776653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-13 Score=122.04 Aligned_cols=206 Identities=14% Similarity=-0.013 Sum_probs=179.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.+..+|..+...+...|++++|...++.+++.. +.+..++..+...+...|++++|...|+++.+... .+..++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence 456789999999999999999999999998854 55688999999999999999999999999987643 3788999999
Q ss_pred HHHHhc-CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 203 LMLMQE-GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 203 ~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
..+... |++++|.+.|+++...+..+.+...+..+...+...|++++|.+.++++.+.. +.+...+..++..+.+.|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 999999 99999999999999832221346788999999999999999999999998864 3468899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
+++|.+.++++.+..+..+...+..+...+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 99999999999887652477888888889999999999999999988753
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.5e-11 Score=124.12 Aligned_cols=230 Identities=12% Similarity=0.055 Sum_probs=167.5
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAH-LLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
..+|++.... ++-+...|-..+..+.+.|+.++|. .+|++.... +|.+...+...+...-+.|++++|.++|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555543 3446778888888888889988996 999998875 366777788888888899999999999999876
Q ss_pred cC----------CCC-----------cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHHc-CC
Q 006624 471 YC----------GCS-----------SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL-RCKPDVYTYNALMSGMVRA-GM 527 (638)
Q Consensus 471 ~~----------~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~-g~ 527 (638)
.. .+. ...+|...+....+.|..+.|..+|.+..+. + ......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCC
Confidence 41 111 2346777788888889999999999999875 2 11222332222222233 45
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 528 IDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKP--DAVSYNTILGCLSRAGMFEEAARLM 605 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (638)
.+.|..+|+..++. .+-+...|...+......|+.+.|..+|++.+.....+ ....|...+.--.+.|+.+.+.++.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~ 564 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE 564 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999986 44467777788888888999999999999998753222 3457888888888899999999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHH
Q 006624 606 KDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 606 ~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+++.+. .|+......+++-|
T Consensus 565 ~R~~~~--~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 565 KRFFEK--FPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHH--STTCCHHHHHHHHT
T ss_pred HHHHHh--CCCCcHHHHHHHHh
Confidence 999865 45544555555544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-13 Score=133.34 Aligned_cols=248 Identities=11% Similarity=0.091 Sum_probs=187.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
..++..+...+.+.|++++|+..|+++.+..+. +..+|+.+..++...|+ +++|++.|++++...+ .+...|..+.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g 173 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHH
Confidence 456777788888999999999999999887544 78889999999999997 9999999999999876 6788899999
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR-AGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~ 317 (638)
..+...|++++|+..|+++++.. +-+..+|..+..++.+.|++++|+..++++++.++. +...|+.+...+.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998864 347888999999999999999999999999888765 78888888888888 5665
Q ss_pred HHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 006624 318 EDA-----YGLFMNMLKEGCKPDIVLINNLINVLGRAG--RLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 318 ~~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 390 (638)
++| +..|++.++..+. +...|+.+...+.+.| ++++|.+.+..+ + ..
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~---------------------- 305 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PS---------------------- 305 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TT----------------------
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cC----------------------
Confidence 777 4778888776544 6677777777777766 466666655554 2 11
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HhCCCCCCHhhHHHHHHHH
Q 006624 391 ASAWFEKMKANGVLPSPFTYSILIDGFCKTN---------RVEKAHLLLEEM-EEKGFPPCPAAYCSLINGY 452 (638)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~A~~~~~~~-~~~~~~~~~~~~~~li~~~ 452 (638)
+.+...+..++.+|.+.| .+++|+.+++++ .+.+ +.....|..+...+
T Consensus 306 -------------p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 306 -------------HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp -------------CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred -------------CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 223444555555555542 247788888887 5543 44445555554443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=127.00 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=162.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHH
Q 006624 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSAL 237 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l 237 (638)
..+..+..+...+...|++++|...|+++.+..+. +...+..+...+...|++++|++.|+++.+..+ .+...+..+
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS--SAATAYYGA 97 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--cchHHHHHH
Confidence 45567888888999999999999999999886443 788999999999999999999999999998765 678889999
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 238 ISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
...+...|++++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+..+. +...+..+...+...|++
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCH
Confidence 999999999999999999998864 457888999999999999999999999999887554 788899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
++|...|+++.+... .+..++..+..+|.+.|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999988754 368889999999999999999999999998744
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.7e-14 Score=132.88 Aligned_cols=247 Identities=11% Similarity=0.006 Sum_probs=165.8
Q ss_pred ccchHHHHHHHHHhhcCCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006624 102 DVEINVKIQFFKWAGRRRNF--EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 102 ~~~~~~a~~~f~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 179 (638)
.++.+.|+..|..+...... +.+..+|..+..++...|++++|...++.++... +.+..++..+...+...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35567788888777654221 1246677888888888888888888888887753 45677888888888888888888
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 180 LSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
...|+++.+..+. +..++..+...|.+.|++++|.+.|+++.+..+ +......++..+...|++++|...+++...
T Consensus 97 ~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP---NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 8888888776432 567788888888888888888888888877653 333334444455666888888888877766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006624 260 NGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL---TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDI 336 (638)
Q Consensus 260 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 336 (638)
.. +++...+ .++..+...++.++|.+.+++........ +...+..+...+...|++++|...|+++.+..+. +
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 248 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH-N- 248 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT-T-
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch-h-
Confidence 53 2333333 36666777777788888887776543211 1456677777777888888888888877765322 2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHH
Q 006624 337 VLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 222244555666666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-13 Score=124.69 Aligned_cols=257 Identities=12% Similarity=0.075 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSA 236 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~ 236 (638)
++..+......+...|++++|+..|+++.+..+. +...+..+...+...|++++|++.|+++...... ++ ...|..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNA-TKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCT-TTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCc-hhHHHHHHHH
Confidence 3445666777788888888888888888776433 5557777888888888888888888888773311 22 234777
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
+...+...|++++|++.+++..+.. +.+..++..+...|...|++++|++.+++..+..+. +...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHH
Confidence 7888888888888888888887753 335677778888888888888888888877776433 56666666633344458
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHCCC-CCCHhHHHHHHHHHHhcCChHHHHH
Q 006624 317 VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR---LEDALKLFNKMEALQC-KPNVVTYNTVIKSLFESKAPASEAS 392 (638)
Q Consensus 317 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~ 392 (638)
+++|...|+++.+..+. +...+..+..++...|+ +++|...++++.+... .|+.. .
T Consensus 158 ~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~----------------~--- 217 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY----------------K--- 217 (272)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG----------------H---
T ss_pred HHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc----------------h---
Confidence 88888888887776433 45666666777766666 6667776666544110 00000 0
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 393 AWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451 (638)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 451 (638)
..-...|..+...|.+.|++++|...++++.+.. |.+..+...+...
T Consensus 218 -----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 218 -----------DELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC--
T ss_pred -----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhhh
Confidence 0012356667778888888888888888888765 5566555554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.9e-13 Score=129.68 Aligned_cols=225 Identities=13% Similarity=0.032 Sum_probs=169.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTC---VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
+...|++++|+..++++++... +.+..++..+...+...|++++|...|+++.+..+. +..+|..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCH
Confidence 3446788889999988887532 124567888888888999999999999888876433 688888888899999999
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.|+++....+ .+...+..+...+...|++++|.+.++++.+.. |+.......+..+...|++++|...+++
T Consensus 94 ~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 94 DAAYEAFDSVLELDP--TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHCT--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCc--cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 999999999888765 567788888888889999999999998888753 4544444555566777888999988877
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP---DIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
....... +...+. ++..+...++.++|...+++..+..... +..++..+...|.+.|++++|...|+++....
T Consensus 170 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 170 HFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 7765432 333333 6667777888888888888876542211 14677788888888888888888888887643
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-11 Score=115.87 Aligned_cols=224 Identities=15% Similarity=0.008 Sum_probs=167.5
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006624 335 DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILI 414 (638)
Q Consensus 335 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 414 (638)
+..++..+...|...|++++|...|++..+. .+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------------------------~~~~a~~~lg 45 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---------------------------------------KENSGCFNLG 45 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---------------------------------------TCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------------------------------------CCHHHHHHHH
Confidence 4555666666666677777777666665441 1334455566
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006624 415 DGFCK----TNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGK----AKRYEAANELFLELKEYCGCSSARVYAVMIKH 486 (638)
Q Consensus 415 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 486 (638)
..|.. .+++++|...|++..+.+ ++.++..+...|.. .+++++|.+.|++..+.+ +...+..+...
T Consensus 46 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 119 (273)
T 1ouv_A 46 VLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGI 119 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHH
Confidence 66666 788888888888877765 66777777778877 888888888888887763 66777778888
Q ss_pred HHh----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 487 FGK----CGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLA 558 (638)
Q Consensus 487 ~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 558 (638)
|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 120 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 120 YHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 887 888888888888888764 55667777777777 888888888888888764 5677777888888
Q ss_pred h----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 006624 559 K----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AGMFEEAARLMKDMNAKG 612 (638)
Q Consensus 559 ~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 612 (638)
. .+++++|...+++..+.+ +...+..+..+|.+ .|++++|.+++++..+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8 888888888888888753 36677778888888 888888888888888664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.51 E-value=3.9e-10 Score=118.71 Aligned_cols=414 Identities=8% Similarity=0.042 Sum_probs=238.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhCC-CCCCHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRK-CKPTANT 197 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~ 197 (638)
+.|..+|..+++.+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|+ ++.+..+|++..... ..|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 468999999999999999999999999999886 57788899999999899998 999999999998873 1378999
Q ss_pred HHHHHHHHHhcCCH--------hHHHHHHHHHHhC-CC-CCCCHHHHHHHHHHHHc---------cCChHHHHHHHHHHH
Q 006624 198 YNSMILMLMQEGYY--------EKIHELYNEMCNE-GN-CFPDTVTYSALISAFGK---------LGRDISAIRLFDEMK 258 (638)
Q Consensus 198 ~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~m~ 258 (638)
|...+....+.+.. +.+.++|+..+.. |. ...+...|...+..... .++++.+.++|++++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888766665543 3455788887653 32 22345677777765442 345677889998888
Q ss_pred HCCCCCCHHHHHHHHHHHHh-------------cCCHHHHHHHHHHHHhC--CCC---------------C-----C---
Q 006624 259 ENGLQPTAKIYTTLVSIYFK-------------LGEVEKALGLVQEMKGK--GCA---------------L-----T--- 300 (638)
Q Consensus 259 ~~g~~~~~~~~~~li~~~~~-------------~g~~~~A~~~~~~m~~~--~~~---------------~-----~--- 300 (638)
......-..+|......--. ..+++.|...+.++... ++. | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 53211112233221111100 11233344444432210 110 0 0
Q ss_pred HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHCCCCCCHh
Q 006624 301 VYTYTELIKGLGRAG-------RVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL-KLFNKMEALQCKPNVV 372 (638)
Q Consensus 301 ~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~ 372 (638)
...|...+..--..+ ..+....+|++.+..-+ -+...|...+..+...|+.++|. ++|+..... ++.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHH
Confidence 123344443222221 12234455666665522 25666666666666666666665 777666542 222333
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 373 TYNTVIKSLFESKAPASEASAWFEKMKANG---------VLPS------------PFTYSILIDGFCKTNRVEKAHLLLE 431 (638)
Q Consensus 373 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~ 431 (638)
.|-..+...-..++...+ ..+|+.+.... -.|+ ...|...+....+.|..+.|..+|.
T Consensus 380 Lwl~~a~~ee~~~~~e~a-R~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEI-ETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444455555555554443 66666555421 0021 2245555555556666677777776
Q ss_pred HHHhC-CCCCCHhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 432 EMEEK-GFPPCPAAYCSLINGYGKA-KRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK 509 (638)
Q Consensus 432 ~~~~~-~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 509 (638)
.+.+. + ......|...+..-.+. ++.+.|.++|+...+. .+.+...+...+......|+.+.|..+|++.......
T Consensus 459 ~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 459 KCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 66654 2 22233333333333333 3466777777666665 4445555566666666666677777777766654321
Q ss_pred C--CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 510 P--DVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 510 p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
+ ....|...+..-.+.|+.+.+..+.+++.+.
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 2345566666556667766777776666664
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=129.10 Aligned_cols=246 Identities=18% Similarity=0.072 Sum_probs=142.7
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TA 266 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~ 266 (638)
....+......+...|++++|+..|+++....+..+. ...+..+...+...|++++|...+++..+. +..| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 4445555556666666666666666666655431111 234555666666666666666666654432 1111 24
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGR--------------------VEDAY 321 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~ 321 (638)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 45666667777777777777777665543110 11 3466677777777787 77777
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 006624 322 GLFMNMLKE----GCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFE 396 (638)
Q Consensus 322 ~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 396 (638)
..+++..+. +..| ...++..+...|...|++++|...+++..+.. -..++...
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~------- 225 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKAA------- 225 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH---------------HHTTCHHH-------
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---------------HhcCCcHH-------
Confidence 777776542 1111 13467777888888888888888888765410 00111000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 397 KMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 397 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
...++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|.+.++++.+
T Consensus 226 ---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 226 ---------ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp ---------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 123566777888888888888888887764310 011 33455555666666666666666655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=131.29 Aligned_cols=302 Identities=12% Similarity=0.044 Sum_probs=164.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHH
Q 006624 300 TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD----IVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYN 375 (638)
Q Consensus 300 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 375 (638)
....+......+...|++++|...|+++.+.... + ..++..+...|...|++++|...++++....
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------- 77 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA--------- 77 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH---------
Confidence 4444555556666666666666666666665322 2 2355666666667777777777666654310
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHH
Q 006624 376 TVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLIN 450 (638)
Q Consensus 376 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~ 450 (638)
-..++.. .....+..+...+...|++++|...+++..+... ..+ ..++..+..
T Consensus 78 ------~~~~~~~----------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ------RTIGDQL----------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ------HHTTCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ------HhccccH----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 0000000 0122344455556666666666666655543210 011 235555566
Q ss_pred HHHccCC--------------------HHHHHHHHHHHHHc----CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 451 GYGKAKR--------------------YEAANELFLELKEY----CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKK 505 (638)
Q Consensus 451 ~~~~~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 505 (638)
.+...|+ +++|.+.+.+..+. +. +....++..+...|...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66666666655432 10 11133566666667777777777777766543
Q ss_pred CCC-CCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 506 LRC-KPD----VYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCV-PD----INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 506 ~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
... .++ ..++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 210 011 235666667777777777777777766642100 11 44566677777777777777777777654
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHhccCCc
Q 006624 576 S----EIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAK----GFEY-DQITYSSILEAVGKVDED 633 (638)
Q Consensus 576 ~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~ 633 (638)
. +..+ ...++..+..+|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1 1111 1445666777777777777777777765532 1111 123455555555555554
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-11 Score=117.87 Aligned_cols=219 Identities=15% Similarity=0.121 Sum_probs=166.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-------hCCCH-------HHHHHHHHHHhh-CCCCCCHHHHHHHHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILG-------KAKMV-------NKALSIFYQIKS-RKCKPTANTYNSMILMLM 206 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~ 206 (638)
++|...|++++... +.++..|..++..+. +.|++ ++|..+|++..+ ..+ .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 57777888877753 667778888777765 35775 889999998887 333 36778888888888
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF-KLGEVEK 284 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~-~~g~~~~ 284 (638)
+.|++++|.++|+++++..+ .+.. .|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIED--IDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSS--SCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 89999999999999888654 2333 78888888888899999999999888764 234555554444322 3688999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006624 285 ALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG-CKP--DIVLINNLINVLGRAGRLEDALKLFNK 361 (638)
Q Consensus 285 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 361 (638)
|.++|+...+..+. +...|..++..+.+.|++++|..+|++.++.. ..| ....|..++..+.+.|+.+.|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999888876544 77888888888888899999999999888863 343 466788888888888999999888888
Q ss_pred HHHCC
Q 006624 362 MEALQ 366 (638)
Q Consensus 362 ~~~~~ 366 (638)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 87643
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-12 Score=111.53 Aligned_cols=61 Identities=10% Similarity=0.059 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
+|..+...|.+.|++++|+..|++..+..+. +..++..+..+|.+.|++++|++.++....
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 67 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVV 67 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3333333333333333333333333333221 333333333333333444444333333333
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.2e-12 Score=132.27 Aligned_cols=237 Identities=17% Similarity=0.043 Sum_probs=119.5
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKEN----GL-QPTAKIYTT 271 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~~ 271 (638)
+...+...|++++|++.|+++.+..+ .+. ..+..+...+...|++++|.+.+++..+. +. +....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 34444445555555555555444432 121 23444444445555555555555444321 10 112334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGK----G-CALTVYTYTELIKGLGRAGR-----------------VEDAYGLFMNMLK 329 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~-~~~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~~~~ 329 (638)
+...|...|++++|.+.+++..+. + ......++..+...|...|+ +++|...+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 555555555655555555554432 0 01123355556666666666 6666666655543
Q ss_pred c----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCC
Q 006624 330 E----GC-KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVL 404 (638)
Q Consensus 330 ~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 404 (638)
. +. .....++..+...|...|++++|...+++..+.. -..++...
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~--------------- 261 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA---------------REFGDRAA--------------- 261 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHHH---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH---------------HhcCCcHH---------------
Confidence 1 11 1123366677777888888888888877765411 00011000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--C---CCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 405 PSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF--P---PCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 405 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
....+..+..+|...|++++|...+++..+... . ....++..+...+...|++++|...+++..+
T Consensus 262 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 331 (411)
T 4a1s_A 262 -ERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLA 331 (411)
T ss_dssp -HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123556677777788888888888877654310 0 0123444555555555555555555555443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-12 Score=131.09 Aligned_cols=280 Identities=14% Similarity=0.029 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHhhC----C-CCCCH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----SVLSEIVNILGKAKMVNKALSIFYQIKSR----K-CKPTA 195 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~ 195 (638)
...+..+...+...|++++|...++++++.. +.++ .++..+...+...|++++|...|++..+. + .....
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 3455677788999999999999999998863 3333 47888899999999999999999887653 1 12245
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC----CCCCHHHHHHHHHHHHccCC-----------------hHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGN----CFPDTVTYSALISAFGKLGR-----------------DISAIRLF 254 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~ 254 (638)
.++..+...|...|++++|.+.|+++..... ......++..+...+...|+ +++|++.+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6788899999999999999999998876421 11234578888899999999 99999988
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 255 DEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLF 324 (638)
Q Consensus 255 ~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~ 324 (638)
++..+. +..+ ...++..+...|...|++++|++.+++..+.... .+ ...+..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 877542 1111 2457888889999999999999999887754211 12 236778888999999999999999
Q ss_pred HHHHHcCCC-C----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006624 325 MNMLKEGCK-P----DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 325 ~~~~~~~~~-p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 399 (638)
++..+.... . ...++..+...|...|++++|...+++..... -..++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~----------- 340 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA---------------QELGDRI----------- 340 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------------HHCCChH-----------
Confidence 888764211 1 14577788888999999999999988875411 0001100
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 436 (638)
....++..+..+|.+.|++++|...+++..+.
T Consensus 341 -----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 341 -----GEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 01335667788888999999999999887764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-12 Score=111.09 Aligned_cols=168 Identities=16% Similarity=0.135 Sum_probs=152.8
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
++..|..+...|.+.|++++|++.|++.++..+ .+...+..+...+.+.|++++|...++...... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP--NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 678899999999999999999999999999876 688899999999999999999999999998864 34678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 353 (638)
..+...++++.|.+.+.+.....+. +...+..+...+.+.|++++|+..|++.++..+. +..++..+..+|.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence 9999999999999999999887655 7889999999999999999999999999997554 7889999999999999999
Q ss_pred HHHHHHHHHHHCC
Q 006624 354 DALKLFNKMEALQ 366 (638)
Q Consensus 354 ~A~~~~~~~~~~~ 366 (638)
+|.+.|++..+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998743
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-12 Score=126.44 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CC-CCCHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSR----KC-KPTAN 196 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 196 (638)
..+......+...|++++|...++++++.. +.+ ..++..+...+...|++++|...+++..+. +. .....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 445566778888888888888888887753 223 356777888888888888888888776432 11 11355
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCC--------------------hHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGR--------------------DISAIR 252 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 252 (638)
++..+...+...|++++|.+.+++.....+..++ ..++..+...+...|+ +++|.+
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 6777888888888888888888887653221122 3366777777777787 777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 253 LFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-----ALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 253 ~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
.+++..+. +..+ ...++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77765432 1111 134566667777777777777777766654210 0012255566666666777777777
Q ss_pred HHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 323 LFMNMLKEGCK-PD----IVLINNLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 323 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+++..+.... .+ ..++..+...|...|++++|...+++..
T Consensus 245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 66666542110 11 3355556666666666666666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.5e-12 Score=125.78 Aligned_cols=238 Identities=19% Similarity=0.096 Sum_probs=121.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIY 269 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~ 269 (638)
......+...|++++|+..|+++.+..+ .+ ...+..+...+...|++++|.+.+++..+. +..+ ...++
T Consensus 9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 9 ALEGERLCKSGDCRAGVSFFEAAVQVGT--EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCc--ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3344445555555555555555555432 12 234445555555555555555555544321 1111 13445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGR--------------------VEDAYGLF 324 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 324 (638)
..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 55666666666666666666555432100 11 2355556666666666 66666666
Q ss_pred HHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006624 325 MNMLKE----GCK-PDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMK 399 (638)
Q Consensus 325 ~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 399 (638)
++.... +.. ....++..+...+...|++++|...+++..+.. -..++..
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------------~~~~~~~----------- 220 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA---------------KEFGDKA----------- 220 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH---------------HhcCChH-----------
Confidence 555431 111 113356667777777788888877777664310 0000000
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006624 400 ANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGF-PPC----PAAYCSLINGYGKAKRYEAANELFLELK 469 (638)
Q Consensus 400 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~ 469 (638)
....++..+...+...|++++|...+++..+... ..+ ..++..+...+...|++++|...++++.
T Consensus 221 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 221 -----AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 0123456667777777888888877777654210 011 2344445555555555555555555443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.9e-12 Score=131.38 Aligned_cols=215 Identities=11% Similarity=0.023 Sum_probs=153.3
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006624 141 IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMV-NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN 219 (638)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 219 (638)
++++...+++.... .+.+...+..+...+...|++ ++|+..|++..+..+. +..+|..+...|.+.|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555566655443 244667777777777777777 7777777777766432 57777777777777788888888887
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHcc---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCH
Q 006624 220 EMCNEGNCFPDTVTYSALISAFGKL---------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL--------GEV 282 (638)
Q Consensus 220 ~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~ 282 (638)
+..+.. |+...+..+...+... |++++|++.+++..+.. +.+...|..+..+|... |++
T Consensus 162 ~al~~~---p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTHC---KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTTC---CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhhC---CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 777765 5567777777777777 77788888887777653 33567777777777777 778
Q ss_pred HHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCA--LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 360 (638)
++|++.|++..+..+. -+...|..+...|...|++++|...|++..+..+. +...+..+...+...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888887776431 26777778888888888888888888888776443 56677777777777777777776554
Q ss_pred HH
Q 006624 361 KM 362 (638)
Q Consensus 361 ~~ 362 (638)
.+
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 43
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=3e-11 Score=116.53 Aligned_cols=221 Identities=6% Similarity=-0.010 Sum_probs=180.6
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 106 NVKIQFFKWAGRRRNFEHNSTTYMALIRCLDE-------TRMI-------GVMWKSIQDMVRSTCVMGPSVLSEIVNILG 171 (638)
Q Consensus 106 ~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (638)
+.|+..|+.+.... +.++..|..++..+.. .|++ ++|..+|++.++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46677777776543 5688899988888763 5886 899999999998423557779999999999
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-ccCChHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG-KLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 249 (638)
+.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++.++..+ ++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR--TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT--CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999986432 344 899999999999999999999999999765 44445544433322 3699999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-CAL--TVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
|.++|++..+.. +.+...|..++..+.+.|++++|..+|++..... ..| ....|..++....+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 3478899999999999999999999999999863 343 577899999999999999999999999
Q ss_pred HHHcCC
Q 006624 327 MLKEGC 332 (638)
Q Consensus 327 ~~~~~~ 332 (638)
+.+..+
T Consensus 267 a~~~~p 272 (308)
T 2ond_A 267 RFTAFR 272 (308)
T ss_dssp HHHHTT
T ss_pred HHHHcc
Confidence 988643
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=130.97 Aligned_cols=215 Identities=10% Similarity=-0.042 Sum_probs=188.0
Q ss_pred chHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 104 EINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMI-GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 104 ~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
..+.+++.+....... +.+...|..+..++...|++ ++|...|++.++.. +.+..++..+...|.+.|++++|...
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3556677776554433 46889999999999999999 99999999998864 55688999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhc---------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc--------C
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQE---------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL--------G 245 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g 245 (638)
|++..+. .|+...+..+...|... |++++|++.|++..+..+ .+...|..+...+... |
T Consensus 160 ~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 160 FSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV--LDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHhhccccc
Confidence 9999988 46679999999999999 999999999999999876 6788999999999998 9
Q ss_pred ChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 246 RDISAIRLFDEMKENGLQ---PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
++++|++.|++..+.. + .+...|..+...|...|++++|++.|++..+..+. +...+..+...+...|++++|+.
T Consensus 236 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 236 ISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999863 2 37889999999999999999999999999988655 77888999999999999999987
Q ss_pred HHHHH
Q 006624 323 LFMNM 327 (638)
Q Consensus 323 ~~~~~ 327 (638)
.+..+
T Consensus 314 ~~~~~ 318 (474)
T 4abn_A 314 SKGKT 318 (474)
T ss_dssp HTTTC
T ss_pred Hhccc
Confidence 66543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-11 Score=121.35 Aligned_cols=235 Identities=11% Similarity=-0.000 Sum_probs=152.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGK----GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-P-----DIVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p-----~~~~~~ 340 (638)
....+...|++++|.+.+++..+. +-.+ ...++..+...+...|++++|...+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677888888888888887754 1111 2456777888888888888888888887763111 1 235778
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (638)
.+...|...|++++|...+++..+.. -..++... ...++..+..+|...
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~~----------------~~~~~~~lg~~y~~~ 237 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMA---------------EAEKQPQL----------------MGRTLYNIGLCKNSQ 237 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHH----------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH---------------HHcCChHH----------------HHHHHHHHHHHHHHC
Confidence 88899999999999999998876411 01111110 123567788899999
Q ss_pred CCHHHHHHHHHHHHhC----CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhcC
Q 006624 421 NRVEKAHLLLEEMEEK----GF-PPCPAAYCSLINGYGKAKRYEAANELFLELKEYC----GCSSARVYAVMIKHFGKCG 491 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g 491 (638)
|++++|...+++..+. +. +....++..+...+.+.|++++|...+++..+.. .+.....+..+...|...|
T Consensus 238 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (383)
T 3ulq_A 238 SQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGP 317 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSC
T ss_pred CCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999988762 22 3445678888888888888888888888876531 1111222455556666666
Q ss_pred C---HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 492 R---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 492 ~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
+ +++|+.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 318 ~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 318 DEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6 55555555443 11122 23444555566666666666666665553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.9e-13 Score=127.52 Aligned_cols=242 Identities=14% Similarity=0.098 Sum_probs=174.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC-----
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR----- 189 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 189 (638)
+.+..+|..+...+...|++++|...++++++. ..+....++..+...+...|++++|...|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999998773 23445677888999999999999999999988754
Q ss_pred -C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC-
Q 006624 190 -K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN- 260 (638)
Q Consensus 190 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~- 260 (638)
+ ......++..+...+...|++++|.+.|+++.+. +........+..+...+...|++++|++.++++.+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1 2234677889999999999999999999998865 211134567888899999999999999999998764
Q ss_pred -----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCC-------HHHHHHHHHHHHhcCCHHHH
Q 006624 261 -----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG-------CALT-------VYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 261 -----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~~~-------~~~~~~li~~~~~~g~~~~A 320 (638)
+..| ...++..+...|...|++++|.+.++++.+.. ..+. ...+..+...+...+.+.++
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 263 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEY 263 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 2122 35578889999999999999999999987531 1111 11222233344455566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 321 YGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 321 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
...++...... +.+..++..+..+|.+.|++++|.+.+++..+
T Consensus 264 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 264 GGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp C---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66676666542 22556788899999999999999999998765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-11 Score=120.20 Aligned_cols=299 Identities=9% Similarity=0.024 Sum_probs=191.2
Q ss_pred HhcCChHHHHHHHHHHHhC--CCCCCH--HHHHHHHHHH--HhCCCHHHHH-----------HHHHHHhhCCCCCCHHH-
Q 006624 136 DETRMIGVMWKSIQDMVRS--TCVMGP--SVLSEIVNIL--GKAKMVNKAL-----------SIFYQIKSRKCKPTANT- 197 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~--~~~~~~--~~~~~l~~~~--~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~- 197 (638)
.+.+++++|..+++++.+. ....+. ..|..++..- .-.+.++.+. ..++.+... ..+...
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~--~~~~~~~ 100 (383)
T 3ulq_A 23 IRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKK--QARLTGL 100 (383)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHH--THHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhc--CCCchhH
Confidence 4578888888888887554 222333 3334433321 1223344444 666665442 111122
Q ss_pred -----HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--C----
Q 006624 198 -----YNSMILMLMQEGYYEKIHELYNEMCNEGNCFP----DTVTYSALISAFGKLGRDISAIRLFDEMKENG--L---- 262 (638)
Q Consensus 198 -----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~---- 262 (638)
+......+...|++++|++.|++........+ ...++..+...+...|++++|.+.+++..+.- .
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 22366777889999999999999877522112 24678888999999999999999999887531 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-
Q 006624 263 QPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GC- 332 (638)
Q Consensus 263 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~- 332 (638)
.....+++.+...|...|++++|++.+++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 112457888999999999999999999887753111 11 247788889999999999999999998872 22
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 333 KPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSI 412 (638)
Q Consensus 333 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 412 (638)
+....++..+...|.+.|++++|...+++..+.. -..++.. ....+..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------~~~~~~~-----------------~~~~~~~ 308 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS---------------QKAGDVI-----------------YLSEFEF 308 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHHTCHH-----------------HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHH-----------------HHHHHHH
Confidence 3346678889999999999999999998875411 0001100 1112344
Q ss_pred HHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 413 LIDGFCKTNR---VEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 413 l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
+...+...|+ +++|+.++++.. ..+.....+..+...|...|++++|.+.+++..+
T Consensus 309 l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 309 LKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5666666776 566666665541 1112233555566666666777776666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=118.80 Aligned_cols=238 Identities=14% Similarity=0.118 Sum_probs=135.0
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 006624 371 VVTYNTVIKSLFESKAPASEASAWFEKMKAN-------GVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK------G 437 (638)
Q Consensus 371 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 437 (638)
...+..+...+...|+..++ ..+++++... ..+.....+..+...+...|++++|...++++.+. +
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A-~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVA-VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34555666666666666666 5555555542 12223455666667777777777777777776543 1
Q ss_pred -CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 006624 438 -FPPCPAAYCSLINGYGKAKRYEAANELFLELKEY------CG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--- 506 (638)
Q Consensus 438 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 506 (638)
.+....++..+...+...|++++|.+.++++.+. +. +.....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223446666777777777777777777776653 11 223455666677777777777777777766543
Q ss_pred ---CCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCCHHHHHH
Q 006624 507 ---RCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED-------GCVPD-------INSHNIILNGLAKSGGPKRAME 568 (638)
Q Consensus 507 ---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 568 (638)
+..|+ ..++..+...+...|++++|.+.++++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 11222 345666667777777777777777776642 01111 1111222222334444555555
Q ss_pred HHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 569 IFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 569 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.++...... ..+..++..+..+|.+.|++++|.+++++..+
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555554321 22456788999999999999999999998874
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-10 Score=102.93 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+..+ .+...+..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 12 RDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP--DNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH
Confidence 3344444444444444444444443321 1344444444444444444444444444444332 233444444444444
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGL 323 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (638)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+..+. +...+..+...+...|++++|...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444444331 223344444444444444444444444444433221 334444444444444444444444
Q ss_pred HHHHH
Q 006624 324 FMNML 328 (638)
Q Consensus 324 ~~~~~ 328 (638)
++++.
T Consensus 167 ~~~~~ 171 (186)
T 3as5_A 167 FKKAN 171 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.4e-11 Score=128.40 Aligned_cols=164 Identities=14% Similarity=0.113 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
..+++.+...|.+.|++++|+..|++..+..+. +..+|+.+..+|.+.|++++|++.|++.++..+ .+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P--~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence 344444555555555555555555554444222 344555555555555555555555555554443 34445555555
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
.+...|++++|++.|++..+.. +-+..+|+.+...|.+.|++++|++.|++..+..+. +...+..+...+...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 5555555555555555554432 123445555555555555555555555555554333 44555555555555555555
Q ss_pred HHHHHHHHH
Q 006624 320 AYGLFMNML 328 (638)
Q Consensus 320 A~~~~~~~~ 328 (638)
|.+.+++++
T Consensus 164 A~~~~~kal 172 (723)
T 4gyw_A 164 YDERMKKLV 172 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=102.17 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=147.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++.+.... +.+..++..+...+...|++++|...++++.+..+ .+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 4577888899999999999999999887753 55788899999999999999999999999987643 378889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+...|++++|.+.++++....+ .+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+...|++++
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998765 678889999999999999999999999998874 4568899999999999999999
Q ss_pred HHHHHHHHHhCC
Q 006624 285 ALGLVQEMKGKG 296 (638)
Q Consensus 285 A~~~~~~m~~~~ 296 (638)
|.+.+++..+..
T Consensus 163 A~~~~~~~~~~~ 174 (186)
T 3as5_A 163 ALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC
Confidence 999999987653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=2e-09 Score=106.94 Aligned_cols=167 Identities=12% Similarity=0.080 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HHHHH-
Q 006624 409 TYSILIDGFCKTNRVEKAHLLLEEMEEKGFP----PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSS--ARVYA- 481 (638)
Q Consensus 409 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~- 481 (638)
.+..+...+...|++++|...+++....... ....++..+...+...|++++|...+++.......++ .....
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 3444555555556666666655555432111 0122344455555555555555555555543211111 11111
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HHH
Q 006624 482 ---VMIKHFGKCGRLSDAVDLFNEMKKLRCKPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVPDI-NSH 550 (638)
Q Consensus 482 ---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~ 550 (638)
..+..+...|++++|...+++.......+. ...+..+...+...|++++|...+++.... |..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 122234455555555555555443221110 112344445555555555555555554431 111111 133
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 551 NIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 551 ~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..+...+...|+.++|...+++...
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444455555555555555555543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-10 Score=110.35 Aligned_cols=236 Identities=9% Similarity=0.001 Sum_probs=158.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---CC-CHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGC-AL----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG--C---KP-DIVL 338 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~p-~~~~ 338 (638)
......+...|++++|+..+++..+... .+ ...++..+...|...|++++|...+++..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3445566788889999988888875411 11 24567778888889999999999888877631 1 11 2456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFC 418 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 418 (638)
++.+...|...|++++|.+.+++..+. .-..++.. ....++..+..+|.
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~---------------~~~~~~~~----------------~~~~~~~~lg~~y~ 233 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALEL---------------AMDIQNDR----------------FIAISLLNIANSYD 233 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---------------HHHTTCHH----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH---------------HHHcCCHH----------------HHHHHHHHHHHHHH
Confidence 788889999999999999999887541 01111111 01245677888899
Q ss_pred hcCCHHHHHHHHHHHHh-----CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCcHHHHHHHHHHHHh
Q 006624 419 KTNRVEKAHLLLEEMEE-----KGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG----CSSARVYAVMIKHFGK 489 (638)
Q Consensus 419 ~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~li~~~~~ 489 (638)
..|++++|...+++..+ .. +....++..+...+.+.|++++|...+++..+... +.....+..+...|..
T Consensus 234 ~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 234 RSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 99999999999998876 33 33466778888888888888888888888876422 2223445556666666
Q ss_pred cCC---HHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 490 CGR---LSDAVDLFNEMKKLRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 490 ~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
.++ +.+|+..+++. +..|+ ...+..+...|...|++++|...|++..+
T Consensus 313 ~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666 56666666552 11222 23445566666777777777777766654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.9e-11 Score=125.56 Aligned_cols=166 Identities=17% Similarity=0.109 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+..+|+.+..+|.+.|++++|++.|++.++..+ .+...|..+...+.+.|++++|++.|++.++.. +-+..+|+.+.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 578899999999999999999999999999876 678899999999999999999999999999864 33688999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006624 274 SIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLE 353 (638)
Q Consensus 274 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 353 (638)
.+|.+.|++++|++.|++..+.++. +...|..+...|.+.|++++|+..|++.++.... +...+..+..+|...|+++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999988765 7899999999999999999999999999997554 7889999999999999999
Q ss_pred HHHHHHHHHHH
Q 006624 354 DALKLFNKMEA 364 (638)
Q Consensus 354 ~A~~~~~~~~~ 364 (638)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.9e-10 Score=104.21 Aligned_cols=208 Identities=8% Similarity=0.009 Sum_probs=163.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
.++..|......+...|++++|...|+..+....+++...+..+..++.+.|++++|+..|++..+..+. +...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4678899999999999999999999999988764478888888999999999999999999999987544 678899999
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDT-------VTYSALISAFGKLGRDISAIRLFDEMKENGLQPT---AKIYTTL 272 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~l 272 (638)
..|...|++++|++.|++..+..+ .+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVP--GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999998775 444 56888888999999999999999999886 344 5677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006624 273 VSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLIN 344 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 344 (638)
..+|...| ...++++...+.. +...|.... ....+.+++|+..|++..+..+. +..+...+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~-~~~~~~~l~~ 222 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN-RTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 88876544 3445555555432 445554443 33456789999999999987543 4555544433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-09 Score=106.54 Aligned_cols=195 Identities=8% Similarity=-0.072 Sum_probs=87.4
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHH
Q 006624 169 ILGKAKMVNKALSIFYQIKSRKCKPTA----NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISA 240 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~ 240 (638)
.+...|++++|...+++........+. .+++.+...+...|++++|.+.+++.....+...+. .++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334445555555555554433221121 133444445555555555555555544321110111 123444455
Q ss_pred HHccCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEMKEN----GLQ--P-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA----LTVYTYTELIK 309 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~~~~~~~~li~ 309 (638)
+...|++++|.+.+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 55555555555555554432 111 1 1233444555555566666666665555432211 11234555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHccCCHHHHHHHHHHHH
Q 006624 310 GLGRAGRVEDAYGLFMNMLKEGCKPD--IVLIN----NLINVLGRAGRLEDALKLFNKME 363 (638)
Q Consensus 310 ~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~----~l~~~~~~~g~~~~A~~~~~~~~ 363 (638)
.+...|++++|...+++.......++ ..... ..+..+...|++++|...++...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 242 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 55666666666666665544211111 11111 12233455566666666665543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.30 E-value=6e-10 Score=102.11 Aligned_cols=209 Identities=11% Similarity=0.030 Sum_probs=164.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH
Q 006624 157 VMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA 236 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 236 (638)
+.++..+......+.+.|++++|+..|++..+....++...+..+..++...|++++|++.|++..+..+ .+...+..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~ 81 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY--NLANAYIG 81 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--SHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc--chHHHHHH
Confidence 4567889999999999999999999999999876546888888899999999999999999999999775 57788999
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTA-------KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT---VYTYTE 306 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~ 306 (638)
+...+...|++++|++.+++..+.. +.+. ..|..+...+...|++++|++.|++..+.+ |+ ...+..
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~ 158 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYS 158 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHH
Confidence 9999999999999999999999863 2344 568888899999999999999999998863 33 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKS 380 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~ 380 (638)
+...+...| ..+++++...+.. +...+.... ....+.+++|...+++..+.. |+......++..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l~~ 222 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHH
Confidence 777775544 4445666555332 444444433 334567899999999998854 665555444433
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.8e-09 Score=105.10 Aligned_cols=166 Identities=13% Similarity=0.034 Sum_probs=119.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCC--C---CC-CHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKENG--L---QP-TAKI 268 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~~~ 268 (638)
......+...|++++|++.|+++.......++ ..++..+...+...|+++.|...+++..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 34455667888999999998888764322133 3567778888888899988888888876531 0 11 2456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 006624 269 YTTLVSIYFKLGEVEKALGLVQEMKGK----GCA-LTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-----EGCKPDIVL 338 (638)
Q Consensus 269 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 338 (638)
++.+...|...|++++|.+.+++..+. +.. ....++..+...|...|++++|...|++..+ .... ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 778888888899999888888877653 111 1234677788888888999998888888877 3332 3667
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHC
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 365 (638)
+..+...|.+.|++++|...+++..+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 788888888888888888888887653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=110.65 Aligned_cols=227 Identities=14% Similarity=0.091 Sum_probs=147.1
Q ss_pred hcCChHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHH
Q 006624 137 ETRMIGVMWKSIQDMVRS-------TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMI 202 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~ 202 (638)
..|++++|...+++.++. ..+....++..+...+...|++++|+..|+++.+. + ......++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 456666666666665542 22334567888888889999999999999888654 1 122456788888
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCC-----C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEG-----N-CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN------GLQP-TAKIY 269 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~ 269 (638)
..|...|++++|.+.|+++.... + .+.....+..+...+...|++++|.+.++++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 88889999999999998887651 1 1134567788888888889999999988888764 1122 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCC
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGK-------GCAL-TVYTYTELIKGLGRAGRVE------DAYGLFMNMLKEGCKPD 335 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~~-~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~p~ 335 (638)
..+...+...|++++|.+.+++..+. ...+ ....+..+...+...+... ++...++..... ....
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 88888888889999999888887753 1111 2223333333333322222 222222211111 1113
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 336 IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..++..+...|...|++++|...+++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788888888999998888887754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-10 Score=109.43 Aligned_cols=227 Identities=15% Similarity=0.073 Sum_probs=158.0
Q ss_pred cchHHHHHHHHHhhc------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHH
Q 006624 103 VEINVKIQFFKWAGR------RRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRS------T-CVMGPSVLSEIVNI 169 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~ 169 (638)
++++.|+..|+.+.. ....+....+|..+..++...|++++|...+++++.. + .+....++..+...
T Consensus 15 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~ 94 (283)
T 3edt_B 15 VPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVL 94 (283)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 444555555554432 1222345778999999999999999999999998764 1 12345688999999
Q ss_pred HHhCCCHHHHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC------CCCCCCHHHHHH
Q 006624 170 LGKAKMVNKALSIFYQIKSR------K-CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE------GNCFPDTVTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~ 236 (638)
+...|++++|...|++..+. . .+....++..+...+...|++++|.+.|+++... ........++..
T Consensus 95 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 174 (283)
T 3edt_B 95 YGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNN 174 (283)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999998764 1 1234678889999999999999999999999875 111124567889
Q ss_pred HHHHHHccCChHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKEN-------GLQP-TAKIYTTLVSIYFKLGE------VEKALGLVQEMKGKGCALTVY 302 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~-------g~~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~~~~~~~~ 302 (638)
+...+...|++++|.+.++++.+. ...+ ....+..+...+...+. +..+...++..... .+....
T Consensus 175 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 253 (283)
T 3edt_B 175 LASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNT 253 (283)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 999999999999999999998863 1122 23334444444433332 23333333222211 122456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 303 TYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 303 ~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
++..+...|...|++++|..+|++.++.
T Consensus 254 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 254 TLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888999999999999999999988753
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=6e-10 Score=106.35 Aligned_cols=169 Identities=12% Similarity=0.010 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHcc-CChHHHHHHHHHHHHCCCCC-C----
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKL-GRDISAIRLFDEMKENGLQP-T---- 265 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~g~~~-~---- 265 (638)
.+|+.+..+|.+.|++++|+..|++.+...+...+ ..+++.+...|... |++++|+..|++..+..... +
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 34444445555555555555554444332110011 23445555555553 55555555555554321000 0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---
Q 006624 266 AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV------YTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD--- 335 (638)
Q Consensus 266 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~--- 335 (638)
..+++.+...+.+.|++++|+..|++..+..+.... ..|..+..++...|++++|...|++.++..+. ++
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 237 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRE 237 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHH
Confidence 234555555566666666666666655554322111 13445555555666666666666655542111 00
Q ss_pred HHHHHHHHHHHH--ccCCHHHHHHHHHHHHH
Q 006624 336 IVLINNLINVLG--RAGRLEDALKLFNKMEA 364 (638)
Q Consensus 336 ~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~ 364 (638)
...+..++..+. ..+++++|+..|+.+..
T Consensus 238 ~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 238 SNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 112333444443 34556666666655543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.8e-09 Score=99.92 Aligned_cols=187 Identities=8% Similarity=-0.060 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CCHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG---PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PTANT 197 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~ 197 (638)
.+...+......+.+.|++++|...|+.++... +.+ ..++..+..++.+.|++++|+..|+++.+..+. ....+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345566666666666666666666666666542 222 455666666666666666666666666654221 12345
Q ss_pred HHHHHHHHHh--------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHH
Q 006624 198 YNSMILMLMQ--------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIY 269 (638)
Q Consensus 198 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 269 (638)
+..+..++.. .|++++|+..|++++...+. +......+. .+...... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~--------------~~~~~~~~----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQ--------------KIRELRAK----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHH--------------HHHHHHHH----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHH--------------HHHHHHHH----HHHHH
Confidence 5556666666 66666666666666665432 111111110 00000000 01113
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCAL--TVYTYTELIKGLGRA----------GRVEDAYGLFMNMLKE 330 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~ 330 (638)
..+...|.+.|++++|+..|+++.+..+.. ....+..+..+|... |++++|...|+++++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 456666777777777777777776653321 234555566666544 6667777777777665
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.13 E-value=6e-08 Score=99.16 Aligned_cols=215 Identities=11% Similarity=-0.008 Sum_probs=115.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHhhC-CCC-CCHHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM-VNKALSIFYQIKSR-KCK-PTANTYN 199 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~~-~~~~~~~ 199 (638)
+-..+|...+..+-. |+++.+..+|+..+. ..|+...|...+....+.+. .+....+|+..... |.. .+...|.
T Consensus 13 ~aR~vyer~l~~~P~-~~~e~~~~iferal~--~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~ 89 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS-KDYRSLESLFGRCLK--KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYK 89 (493)
T ss_dssp CHHHHHHHHHHHHHT-TCHHHHHHHHHHHST--TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHCCC-CCHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHH
Confidence 334555555555554 777888888887777 34577777777776666552 34566677766543 422 3566666
Q ss_pred HHHHHHH----hcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 200 SMILMLM----QEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 200 ~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
..+..+. .+|+.+.+..+|++++.... .+.. .|..... +.+..+...+..++.+.
T Consensus 90 ~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~--~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~----------------- 149 (493)
T 2uy1_A 90 EYIEEEGKIEDEQTRIEKIRNGYMRALQTPM--GSLSELWKDFEN-FELELNKITGKKIVGDT----------------- 149 (493)
T ss_dssp HHHHHTSSCSSHHHHHHHHHHHHHHHHTSCC--TTHHHHHHHHHH-HHHHHCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhchhhhHHHHHHHHHHHHHHhChh--hhHHHHHHHHHH-HHHHhccccHHHHHHHH-----------------
Confidence 6666543 24567777777777776321 2221 1111111 11111111222222111
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 275 IYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG--R-----VEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
.+.+..|..+++.+...-...+...|...+..-...+ - .+.+..+|++++...+ .+...|...+..+.
T Consensus 150 ----~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~ 224 (493)
T 2uy1_A 150 ----LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLI 224 (493)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 1123334444443332100013345555554432211 1 2346678888887643 35777887888888
Q ss_pred ccCCHHHHHHHHHHHHHC
Q 006624 348 RAGRLEDALKLFNKMEAL 365 (638)
Q Consensus 348 ~~g~~~~A~~~~~~~~~~ 365 (638)
+.|+.+.|..++++....
T Consensus 225 ~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 225 GIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhC
Confidence 888999999999988875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=3.4e-09 Score=101.12 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-CC----
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS----TCVM-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-PT---- 194 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---- 194 (638)
...|+....+|...|++++|...|++.+.. +-++ ...+++.+..+|.+.|++++|+..|++..+.... .+
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~ 116 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG 116 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 346666666777777777777777666543 1111 1346667777777777777777777766543111 01
Q ss_pred HHHHHHHHHHHHhc-CCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH---
Q 006624 195 ANTYNSMILMLMQE-GYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA--- 266 (638)
Q Consensus 195 ~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~--- 266 (638)
..+++.+..+|... |++++|++.|++.+...+...+ ..++..+...+.+.|++++|+..|++..+.......
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 34566677777775 7777777777776654321011 245666677777777777777777777664322111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006624 267 ---KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-T---VYTYTELIKGLG--RAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 267 ---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~---~~~~~~li~~~~--~~g~~~~A~~~~~~~~~ 329 (638)
..|..+..++...|++++|...+++..+..+.. + ...+..++..+. ..+++++|+..|+.+..
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 145566666777777777777777766543211 1 112333444443 34556666666655443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.10 E-value=6.3e-09 Score=85.89 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..++..+...|++++|..+|+++.+..+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3344444444444444444444443332 233334444444444444444444444444332 1233334444444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
.|++++|.+.++++.+..+. +...+..+...+...|++++|...++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 44444444444444433221 33334444444444444444444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-09 Score=98.80 Aligned_cols=91 Identities=14% Similarity=0.039 Sum_probs=74.0
Q ss_pred cccchHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHh-----
Q 006624 101 IDVEINVKIQFFKWAGRRR-NFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTC--VMGPSVLSEIVNILGK----- 172 (638)
Q Consensus 101 ~~~~~~~a~~~f~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----- 172 (638)
..++++.|+..|..+.... ..+....++..+..++.+.|++++|...|+..++... +..+.++..+..++.+
T Consensus 27 ~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~ 106 (261)
T 3qky_A 27 NQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPY 106 (261)
T ss_dssp HTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCT
T ss_pred HhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccc
Confidence 4678999999999887654 2122278899999999999999999999999988532 1235678888899998
Q ss_pred ---CCCHHHHHHHHHHHhhCCC
Q 006624 173 ---AKMVNKALSIFYQIKSRKC 191 (638)
Q Consensus 173 ---~g~~~~A~~~~~~~~~~~~ 191 (638)
.|++++|+..|+++.+..+
T Consensus 107 ~~~~~~~~~A~~~~~~~l~~~p 128 (261)
T 3qky_A 107 ELDQTDTRKAIEAFQLFIDRYP 128 (261)
T ss_dssp TSCCHHHHHHHHHHHHHHHHCT
T ss_pred cccchhHHHHHHHHHHHHHHCc
Confidence 9999999999999988743
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=6.5e-09 Score=85.81 Aligned_cols=129 Identities=17% Similarity=0.208 Sum_probs=71.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+...|++++|..+|+++.+.+. .+...+..+...+...|++++|...|+++....+ .+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC--CchHHHHHHHHHHH
Confidence 34444555555555555555555544322 2445555555555556666666666666555443 34455555556666
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
..|++++|.+.++++.+.. +.+..++..++..+.+.|++++|.+.++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6666666666666655542 224555556666666666666666666665543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.1e-09 Score=94.19 Aligned_cols=125 Identities=14% Similarity=0.109 Sum_probs=68.4
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+..+|.+.|++++|+..|++.++..+ .+...+..+...+...|++++|++.|++..+.. +.+..++..+...|...|
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAP--NNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 66666666666666666666666554 455666666666666666666666666666643 234556666666655443
Q ss_pred C--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 281 E--VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 281 ~--~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+ .+.+...++.... +.|....+.....++...|++++|...|++.++.
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 2333444443321 1222222333344445566666666666666653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.7e-09 Score=116.09 Aligned_cols=171 Identities=11% Similarity=-0.046 Sum_probs=91.6
Q ss_pred HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 136 DETRMIGVMWKSIQDMV--------RSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
...|++++|++.+++.+ .. .+.+...+..+...+.+.|++++|+..|+++.+..+. +...|..+..++.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666655 21 1334455555555666666666666666665554322 45555556666666
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALG 287 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 287 (638)
.|++++|++.|+++.+..+ .+...+..+...+.+.|++++ ++.|++..+.. +.+...|..+..++.+.|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~P--~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP--GELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST--TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655543 344555555555555666655 55555555542 2244555555555555566666655
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 288 LVQEMKGKGCALTVYTYTELIKGLGR 313 (638)
Q Consensus 288 ~~~~m~~~~~~~~~~~~~~li~~~~~ 313 (638)
.|++..+.++. +...+..+..++..
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHc
Confidence 55555544322 23444444444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-07 Score=92.48 Aligned_cols=201 Identities=11% Similarity=-0.015 Sum_probs=132.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 006624 392 SAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY 471 (638)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 471 (638)
..++++.... ++.+...|...+..+.+.|+.++|..++++.... |.+...+...... .+.+ +. ++.+.+.
T Consensus 199 ~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~---~~---~~~l~~~ 268 (493)
T 2uy1_A 199 HFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEE---AV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCT---HH---HHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchh---HH---HHHHHHH
Confidence 4556666553 2445777888888888889999999999998877 4443333322111 1111 11 2222221
Q ss_pred C------------CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH-cCCHHHHHHHHHHH
Q 006624 472 C------------GCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR-AGMIDDAYSLLRRM 538 (638)
Q Consensus 472 ~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~ 538 (638)
- ......+|...+....+.++.+.|..+|++. +.. ..+...|......-.. .++.+.|..+|+..
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~a 346 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSG 346 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 0 0112345667777777788899999999999 321 1233334322222122 34799999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 539 EEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 539 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+.. +-+...+...++...+.|+.+.|..+|+++. .....|...+.--...|+.+.+..+++++..
T Consensus 347 l~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 347 LLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9853 2245566677887889999999999999983 2577888888877888999999999888874
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.05 E-value=8.3e-09 Score=92.79 Aligned_cols=172 Identities=10% Similarity=-0.025 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHHHC
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSA----------------LISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+......+.+.|++++|+..|++.....+ .+...|.. +...+.+.|++++|+..|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNI--DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCH--HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 333444455556666666666666655442 23334444 888888999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHH
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR--VEDAYGLFMNMLKEGCKPDIVL 338 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~ 338 (638)
. +-+...+..+...+...|++++|+..|++..+.++. +..++..+...|...|+ .+.+...++.... ..|....
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 4 346888899999999999999999999999887665 77888888888766554 3445555555432 2222334
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 006624 339 INNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT 376 (638)
Q Consensus 339 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 376 (638)
+.....++...|++++|...|++..+. .|+......
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 444566667788999999999998774 466554443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=4.7e-08 Score=91.20 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=62.1
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCG-CSSARVYAVMIKHFGKCGRLSDAVDLFNEMK 504 (638)
Q Consensus 426 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 504 (638)
|+..+++..+.+ +++..++..+..++...|++++|++++.+.+..+. ..+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444443333 23333333444444444555555555544433322 1234444445555555555555555555554
Q ss_pred hCCCCC-----CHhhHHHHHHH--HHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006624 505 KLRCKP-----DVYTYNALMSG--MVRAG--MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 505 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
+. .| +..+...+..+ ....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 23 13333333333 12222 455555555555443 2332222223334555555555555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-09 Score=114.94 Aligned_cols=174 Identities=10% Similarity=-0.081 Sum_probs=132.9
Q ss_pred HhCCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 171 GKAKMVNKALSIFYQIK--------SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
...|++++|++.|++.. +.. +.+...+..+..++.+.|++++|++.|+++.+..+ .+...|..+...+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHHH
Confidence 67788888888888887 432 23667788888888888888888888888888765 57778888888888
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 322 (638)
..|++++|++.|++..+.. +.+...+..+..++.+.|++++ ++.|++..+.++. +...|..+..++.+.|++++|+.
T Consensus 479 ~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888888763 3356778888888888888888 8888888877655 67788888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGR 351 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 351 (638)
.|++..+.... +...+..+..++...++
T Consensus 556 ~~~~al~l~P~-~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRH-FTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred HHHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence 88888765332 35566667777655444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.3e-09 Score=98.00 Aligned_cols=166 Identities=13% Similarity=0.029 Sum_probs=95.1
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHH-HHH
Q 006624 158 MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVT-YSA 236 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~ 236 (638)
.+...+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|.+.++++.... |+... ...
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD---QDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---CSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---cchHHHHHH
Confidence 33445555556666666666666666666555332 55566666666666666666666666665543 33222 222
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC
Q 006624 237 LISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAG 315 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g 315 (638)
....+...++.++|.+.+++..+.. +.+...+..+...+...|++++|++.|+++.+..+.. +...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2223445555666666666665543 2345666666666666666666666666666654331 2455666666666666
Q ss_pred CHHHHHHHHHHHH
Q 006624 316 RVEDAYGLFMNML 328 (638)
Q Consensus 316 ~~~~A~~~~~~~~ 328 (638)
+.++|...|++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666665543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-07 Score=86.67 Aligned_cols=219 Identities=9% Similarity=0.060 Sum_probs=153.6
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 006624 140 MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK--MVNKALSIFYQIKSRKCKPTANTYNSMILML----MQE---GY 210 (638)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~ 210 (638)
..++|++++..++... +-+..+++.-...+...| ++++++.+++.+....++ +..+|+.....+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 3357777777777643 445556676666777777 788888888888776544 666676666555 444 67
Q ss_pred HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------H
Q 006624 211 YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE------V 282 (638)
Q Consensus 211 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~ 282 (638)
++++++.++++.+..+ .+-.+|+.-.-.+.+.|+++ ++++.++++.+.. +-|..+|+.-...+.+.+. +
T Consensus 126 ~~~EL~~~~~~l~~~p--kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDP--KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 7888888888887765 56677776666667777777 8888888888764 3467777777766666666 7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 283 EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED-AYGLFMNMLKEG--CKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 283 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
+++++.+++++...+. |...|+-+...+.+.|+..+ +..+.+++.+.+ -..+...+..++.+|.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 8888888888877665 77777777777777776444 445666555432 1236777888888888888888888888
Q ss_pred HHHHH
Q 006624 360 NKMEA 364 (638)
Q Consensus 360 ~~~~~ 364 (638)
+.+.+
T Consensus 282 ~~l~~ 286 (306)
T 3dra_A 282 DLLKS 286 (306)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-08 Score=89.79 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=36.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 307 LIKGLGRAGRVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 307 li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+...|.+.|++++|+..|+++++..+... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 44556666777777777766666532211 1345566666677777777777776666544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.2e-07 Score=86.62 Aligned_cols=153 Identities=7% Similarity=0.036 Sum_probs=76.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC------
Q 006624 280 GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVE--DAYGLFMNMLKEGCKPDIVLINNLINVLGRAGR------ 351 (638)
Q Consensus 280 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------ 351 (638)
+++++++++++++.+..+. +..+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.-...+...+.
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 3445555555555544433 4444444444444444444 555555555554433 44444444444444443
Q ss_pred HHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 352 LEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANG--VLPSPFTYSILIDGFCKTNRVEKAHLL 429 (638)
Q Consensus 352 ~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 429 (638)
++++++.++.+..... -|...|+.+-..+...+...+.+..+..++...+ -+.++..+..+.+.+.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 5555555555544332 1444444444444444443333333333333211 133566677777777777777777777
Q ss_pred HHHHHh
Q 006624 430 LEEMEE 435 (638)
Q Consensus 430 ~~~~~~ 435 (638)
++.+.+
T Consensus 281 ~~~l~~ 286 (306)
T 3dra_A 281 YDLLKS 286 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.8e-08 Score=89.00 Aligned_cols=189 Identities=9% Similarity=-0.064 Sum_probs=125.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC-H-HHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-M-GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT-A-NTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~-~~~~ 199 (638)
+...+..+...+.+.|++++|+..|+.++..... + ....+..+..++.+.|++++|+..|+++.+..+... . .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4456667778888899999999999998875321 1 235778888899999999999999999887643321 1 2455
Q ss_pred HHHHHHHh------------------cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 200 SMILMLMQ------------------EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 200 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
.+..++.+ .|++++|+..|+++++..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~--~~~a~~a~~~l----------~~~~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN--SQYTTDATKRL----------VFLKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT--CTTHHHHHHHH----------HHHHHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC--ChhHHHHHHHH----------HHHHHHH----
Confidence 55555554 56788888888888876642 22222111100 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 262 LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 262 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
......+...|.+.|++++|+..|+++.+..+... ...+..+..++.+.|+.++|.+.++.+...++
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567778888999999999998887644311 24677788888999999999999988877643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.99 E-value=4.2e-08 Score=91.51 Aligned_cols=181 Identities=15% Similarity=0.075 Sum_probs=104.4
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 179 ALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 179 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
|+..|+++.+.+ .++..++..+..++...|++++|++++.+.+..++..-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566666665543 3345555566677777777777777777766554311345566666777777777777777777776
Q ss_pred HCCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006624 259 ENGLQP-----TAKIYTTLVSIY--FKLG--EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 259 ~~g~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
+. .| +..+...|+.++ ...| ++.+|..+|+++.+.. |+..+...+..++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 54 34 244444454442 2223 6777777777765542 3322333333466677777777777765544
Q ss_pred cC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 330 EG---------CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 330 ~~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
.- -+-|..+...+|......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 20 02245555455555555565 6677777776643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.3e-08 Score=87.70 Aligned_cols=162 Identities=12% Similarity=0.033 Sum_probs=73.8
Q ss_pred HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHhhHHH
Q 006624 442 PAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCG----RLSDAVDLFNEMKKLRCKPDVYTYNA 517 (638)
Q Consensus 442 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~ 517 (638)
+.++..+...|...+++++|.+.|++..+.+ +...+..+...|.. + ++++|...|++..+.| +...+..
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~ 90 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIV 90 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3444444444444444444444444444432 23334444444443 3 4455555555444432 3334444
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 006624 518 LMSGMVR----AGMIDDAYSLLRRMEEDGCV-PDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTI 588 (638)
Q Consensus 518 l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 588 (638)
|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|...|++..+. ..+...+..|
T Consensus 91 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~L 168 (212)
T 3rjv_A 91 LARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWA 168 (212)
T ss_dssp HHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHH
Confidence 4444443 44555555555555544311 014444455555554 44555555555555543 1223344444
Q ss_pred HHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 006624 589 LGCLSRA-G-----MFEEAARLMKDMNAKG 612 (638)
Q Consensus 589 ~~~~~~~-g-----~~~~A~~~~~~m~~~~ 612 (638)
...|... | ++++|..++++..+.|
T Consensus 169 g~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 169 GMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 4444432 2 5555655555555544
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.4e-09 Score=90.48 Aligned_cols=141 Identities=10% Similarity=-0.037 Sum_probs=67.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKI 214 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 214 (638)
+...|++++|+..++...... +.++..+..+...|.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 334445555555555443321 112233444555555555555555555555544322 455555555555555555555
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRL-FDEMKENGLQPTAKIYTTLVSIYFKLG 280 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g 280 (638)
+..|++.++..+ .+...+..+...+.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 85 ~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNP--TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 555555555443 3444555555555555555444333 34444432 123444444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=6.5e-09 Score=90.70 Aligned_cols=162 Identities=14% Similarity=0.100 Sum_probs=97.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-H
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-F 241 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~ 241 (638)
+......+.+.|++++|...|++..+..+. +...+..+..++.+.|++++|+..|+++.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHH
Confidence 445556666777777777777766554322 56667777777777777777777777766544 222222221111 1
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL-TVYTYTELIKGLGRAGRVEDA 320 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~A 320 (638)
...++..+|++.+++..+.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 12222334566666666542 2246667777777777777777777777777665432 345666667777777777777
Q ss_pred HHHHHHHHH
Q 006624 321 YGLFMNMLK 329 (638)
Q Consensus 321 ~~~~~~~~~ 329 (638)
...|++.+.
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777766543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-09 Score=90.14 Aligned_cols=110 Identities=7% Similarity=-0.011 Sum_probs=49.4
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006624 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
...|++++|+..+.+.....+. +...+..+...|.+.|++++|++.|++.++..+ .+..+|..+...+.+.|++++|
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCchHHH
Confidence 3344455555555544433111 223334444455555555555555555544443 3444444444444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 251 IRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 251 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 284 (638)
+..|++..+.. +-+..++..+...|.+.|++++
T Consensus 85 ~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 85 VECYRRSVELN-PTQKDLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Confidence 55444444432 1134444444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-08 Score=86.48 Aligned_cols=176 Identities=14% Similarity=0.011 Sum_probs=109.3
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC----ChHHHHHH
Q 006624 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG----RDISAIRL 253 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 253 (638)
+|.+.|++..+.| ++.++..+...|...+++++|++.|++..+.+ +...+..|...|.. + ++++|.+.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 3555666665542 56666666666666677777777777766643 34555556666655 5 66777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006624 254 FDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCA-LTVYTYTELIKGLGR----AGRVEDAYGLF 324 (638)
Q Consensus 254 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~ 324 (638)
|++..+.| +...+..|...|.. .+++++|++.|++..+.|.. .+...+..|...|.. .+++++|..+|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 77766654 55666666666665 66777777777777665431 015566666666666 66777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHHHHHHHHHHHHHCC
Q 006624 325 MNMLKEGCKPDIVLINNLINVLGRA-G-----RLEDALKLFNKMEALQ 366 (638)
Q Consensus 325 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 366 (638)
++..+.+ .+...+..|...|... | +.++|..+|+...+.|
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7776651 2334555566666542 2 6777777777766644
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.8e-09 Score=89.54 Aligned_cols=163 Identities=13% Similarity=0.063 Sum_probs=125.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-H
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-L 205 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~ 205 (638)
.+......+.+.|++++|...++..++.. +.++..+..+...+.+.|++++|+..|+++.+..+ +...+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 45667788889999999999998877643 55678888999999999999999999998877633 55444333322 2
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKLGEVEK 284 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~ 284 (638)
...+...+|++.|++.....+ .+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P--~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP--DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 233344457888999888775 568888999999999999999999999998864322 35688889999999999999
Q ss_pred HHHHHHHHHh
Q 006624 285 ALGLVQEMKG 294 (638)
Q Consensus 285 A~~~~~~m~~ 294 (638)
|...|++...
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-08 Score=104.55 Aligned_cols=156 Identities=8% Similarity=-0.064 Sum_probs=111.0
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|...+++.++.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888877643 456778888888888888888888888888877433 678888888888888888888888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 006624 218 YNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL---GEVEKALGLVQEMKG 294 (638)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~ 294 (638)
|++..+..+ .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 888888765 567788888888888888888888888888763 33577788888888888 888888888888887
Q ss_pred CCCC
Q 006624 295 KGCA 298 (638)
Q Consensus 295 ~~~~ 298 (638)
.++.
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 7654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=3e-08 Score=104.48 Aligned_cols=153 Identities=10% Similarity=-0.030 Sum_probs=116.6
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++.+.|+..|+.+.... +.+...|..+..++.+.|++++|...+++.++.. +.+...+..+...+.+.|++++|...
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45677888888776543 4578889999999999999999999999988854 55678889999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc---CChHHHHHHHHHHHH
Q 006624 183 FYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL---GRDISAIRLFDEMKE 259 (638)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~ 259 (638)
|++..+..+. +...+..+..+|.+.|++++|.+.|++..+..+ .+...+..+...+... |++++|.+.+++..+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998877433 688889999999999999999999999988775 5678888888999888 999999999999888
Q ss_pred CC
Q 006624 260 NG 261 (638)
Q Consensus 260 ~g 261 (638)
.+
T Consensus 157 ~~ 158 (568)
T 2vsy_A 157 QG 158 (568)
T ss_dssp HT
T ss_pred cC
Confidence 64
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.2e-08 Score=93.93 Aligned_cols=167 Identities=11% Similarity=0.036 Sum_probs=141.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHH-H
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYN-S 200 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ 200 (638)
+.+...+..+...+.+.|++++|...+++.+... +.++..+..+...+.+.|++++|...++++.... |+..... .
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 4466788889999999999999999999998864 5678899999999999999999999999998763 4444333 3
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP-TAKIYTTLVSIYFKL 279 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~ 279 (638)
....+.+.++.++|++.|++.....+ .+...+..+...+...|++++|++.|+++.+..... +...+..++..+...
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P--~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENP--EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33447788889999999999999876 688899999999999999999999999999864221 267899999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006624 280 GEVEKALGLVQEMK 293 (638)
Q Consensus 280 g~~~~A~~~~~~m~ 293 (638)
|+.++|...+++..
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99999998887754
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=4.8e-07 Score=86.18 Aligned_cols=164 Identities=13% Similarity=0.053 Sum_probs=107.2
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV----TYSALISAFGKLGRDISAIRLFDEMKENGLQ-PT----AKIYTT 271 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~----~~~~~~ 271 (638)
.+..+...|++++|.+.+++........|+.. .+..+...+...|++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566677777777777777766443223321 2334555666667777777777777763221 12 235777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKG----K-GCAL-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~----~-~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 340 (638)
+...|...|++++|+..++++.+ . +..+ ...++..+...|.+.|++++|+..+++.++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77788888888888888877763 1 1111 2336777788888888888888888877653 22222 56788
Q ss_pred HHHHHHHccC-CHHHHHHHHHHHHH
Q 006624 341 NLINVLGRAG-RLEDALKLFNKMEA 364 (638)
Q Consensus 341 ~l~~~~~~~g-~~~~A~~~~~~~~~ 364 (638)
.+..+|.+.| ++++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888888 46888888887654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-06 Score=80.30 Aligned_cols=229 Identities=12% Similarity=0.041 Sum_probs=149.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
.+-..+.+.+..++|+++++.++..+ +-+..+++.--..+...| .+++++.+++.+....++ +..+|+.....+.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHh
Confidence 33333444444567777777777643 445566666666666667 488888888888777554 777777777776665
Q ss_pred -C-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 209 -G-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI--------SAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 209 -g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
+ +++++++.++++.+..+ .|...|+.-.-.+.+.|.++ ++++.++++++.. +-|..+|+.....+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dp--kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDP--KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVS 213 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCT--TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTT
T ss_pred cCCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 6 77788888888887665 56666665555555555555 7788888887764 3477777777777777
Q ss_pred cCC-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC
Q 006624 279 LGE-------VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV--------------------EDAYGLFMNMLKEG 331 (638)
Q Consensus 279 ~g~-------~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~~~~~ 331 (638)
.++ ++++++.+++.....+. |...|+-+-..+.+.|+. .+......++...+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 665 67788888877776655 777776655555555543 22222222332221
Q ss_pred -----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 332 -----CKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 332 -----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
..+.......+++.|...|+.++|.++++.+.+
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 135677888888888888888888888888754
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.3e-07 Score=90.78 Aligned_cols=200 Identities=11% Similarity=-0.000 Sum_probs=115.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|++++|.+++++..+... .+ .+...+++++|...|.+. +..|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4556666666666554211 00 011135666666665553 3345566777777777
Q ss_pred HHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 218 YNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGL 288 (638)
Q Consensus 218 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~ 288 (638)
|.+.........+ ..+|+.+...|.+.|++++|+..|++..+. |-.. -..+++.+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7665543211011 345666667777777777777777766542 1110 13456667777766 777777777
Q ss_pred HHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHH
Q 006624 289 VQEMKGKGCAL-----TVYTYTELIKGLGRAGRVEDAYGLFMNMLKE----GCKPD-IVLINNLINVLGRAGRLEDALKL 358 (638)
Q Consensus 289 ~~~m~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 358 (638)
|++..+..... ...++..+...+.+.|++++|+..|++.++. +..+. ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77765431110 1346667777777788888888777777653 11111 12455566666677888888888
Q ss_pred HHHHH
Q 006624 359 FNKME 363 (638)
Q Consensus 359 ~~~~~ 363 (638)
|++..
T Consensus 218 ~~~al 222 (307)
T 2ifu_A 218 VRESY 222 (307)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77776
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=4.5e-07 Score=81.67 Aligned_cols=129 Identities=14% Similarity=0.038 Sum_probs=82.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+...|++++|...|++.. .|+...|..+...+.+.|++++|++.|++.....+ .+...+..+...+.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHH
Confidence 3344555666666666666666553 34566666666666666666666666666666554 45566666666666
Q ss_pred ccCChHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 243 KLGRDISAIRLFDEMKENGLQ--------------P-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC 297 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 297 (638)
..|++++|++.|++..+.... | ....+..+...+.+.|++++|.+.+++..+..+
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 667777776666666654211 1 125667777777777777777777777776644
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-06 Score=80.41 Aligned_cols=163 Identities=11% Similarity=0.010 Sum_probs=116.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCC-Cc----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HhhHHH
Q 006624 448 LINGYGKAKRYEAANELFLELKEYCGC-SS----ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK-PD----VYTYNA 517 (638)
Q Consensus 448 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 517 (638)
.+..+...|++++|...+++..+.... ++ ...+..+...+...|++++|+..|++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356677778888888888877764221 22 113345666777778889999999888774222 22 236888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC-HHHHH
Q 006624 518 LMSGMVRAGMIDDAYSLLRRMEED-----GCVPD-INSHNIILNGLAKSGGPKRAMEIFTKMQH----SEIKPD-AVSYN 586 (638)
Q Consensus 518 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~ 586 (638)
+...|...|++++|+..|+++++. +..+. ..++..++..|.+.|++++|..++++..+ .+..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888841 11122 34778888999999999999999998774 222223 56788
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHh
Q 006624 587 TILGCLSRAG-MFEEAARLMKDMNA 610 (638)
Q Consensus 587 ~l~~~~~~~g-~~~~A~~~~~~m~~ 610 (638)
.+..++.+.| ++++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8999999999 46999998888764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=5.8e-06 Score=78.78 Aligned_cols=139 Identities=12% Similarity=0.036 Sum_probs=75.7
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-CHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-C-ChH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEG-YYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL-G-RDI 248 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 248 (638)
+.+..++|+++++++...++. +..+|+.....+...| .++++++.++.++..++ .+..+|+.-...+.+. + +.+
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHCCSCCH
T ss_pred hCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhcCCChH
Confidence 334445677777776666443 5566666666666666 36667777776666554 4555555555554444 4 556
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVE--------KALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
+++++++++.+.. +-|..+|+.-.-.+.+.|.++ ++++.++++.+.++. |...|+.....+.+.+
T Consensus 143 ~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 143 SEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp HHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 6666666666543 235555554444444433333 555555555554443 4444544444444444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.6e-07 Score=75.09 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+...+..|.+.|++++|++.|++.++..+ .+...|..+..++.+.|++++|++.+++.++.. +.+...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 344455555555555555555555555443 345555555555555555555555555555432 22344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCC
Q 006624 277 FKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~ 296 (638)
...|++++|++.|++..+..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 55555555555555555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-07 Score=88.13 Aligned_cols=202 Identities=10% Similarity=-0.008 Sum_probs=126.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCCHh
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSR----KCK-PTANTYNSMILMLMQEGYYE 212 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~ 212 (638)
.+++++|...|... ...|...|++++|...|.+..+. +.. .-..+|+.+...|.+.|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35666666665543 34556667777777776665432 100 01346777777788888888
Q ss_pred HHHHHHHHHHhCCCCC--CC--HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC---C--CHHHHHHHHHHHHhcCCHH
Q 006624 213 KIHELYNEMCNEGNCF--PD--TVTYSALISAFGKLGRDISAIRLFDEMKENGLQ---P--TAKIYTTLVSIYFKLGEVE 283 (638)
Q Consensus 213 ~A~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~g~~~ 283 (638)
+|++.|++.+...... +. ..++..+...|.. |++++|++.|++..+.... + ...+++.+...|.+.|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 8888887765432110 11 3466777777877 8888888888877653100 0 1457788888888999999
Q ss_pred HHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHHH
Q 006624 284 KALGLVQEMKGK----GCALT-VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-D---IVLINNLINVLGRAGRLED 354 (638)
Q Consensus 284 ~A~~~~~~m~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~~g~~~~ 354 (638)
+|++.|++.... +..+. ...+..++..+...|++++|...|++.+ ..+.. + ......++..+ ..|+.+.
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 999988887753 11111 2356666777778899999999999888 42211 1 12334445544 4566655
Q ss_pred HHH
Q 006624 355 ALK 357 (638)
Q Consensus 355 A~~ 357 (638)
+.+
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.75 E-value=5.3e-08 Score=92.06 Aligned_cols=100 Identities=6% Similarity=-0.111 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34556666666666666666666666666542 335566666666666666666666666666655332 5566666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|+..|++.....
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 6666666666666666665543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-06 Score=83.34 Aligned_cols=165 Identities=10% Similarity=0.035 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC---CCC--
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP------SVLSEIVNILGKAKMVNKALSIFYQIKSRKC---KPT-- 194 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-- 194 (638)
..+...+..+...|++++|.+.+++.+..... .. ..+..+...+...|++++|+..|++..+... .+.
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 34455566667777777777777766654211 11 1233344455556666666666666553211 111
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHH---hCCCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC----CCC-
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMC---NEGNCFP--DTVTYSALISAFGKLGRDISAIRLFDEMKENG----LQP- 264 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~- 264 (638)
..+|+.+...|...|++++|++.|+++. +..+..+ ...++..+...|...|++++|++.+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 3456666666666666666666666655 2111001 11355555555556666666666555554321 000
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHH
Q 006624 265 TAKIYTTLVSIYFKLGEVEKA-LGLVQE 291 (638)
Q Consensus 265 ~~~~~~~li~~~~~~g~~~~A-~~~~~~ 291 (638)
-..+|..+...|.+.|++++| ...+++
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 033445555555555555555 444443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=5.8e-07 Score=80.88 Aligned_cols=131 Identities=9% Similarity=-0.081 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..+..+...+...|++++|...+++.+ .+++.++..+...+.+.|++++|+..|++..+..+ .+...|..+..++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHH
Confidence 445677888899999999999998763 56888999999999999999999999999987753 3788999999999
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCC--------------CHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFP--------------DTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
...|++++|++.|++..+..+..+ ....+..+...+.+.|++++|.+.|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999998664211 23778889999999999999999999999864
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=4e-07 Score=73.92 Aligned_cols=97 Identities=11% Similarity=-0.009 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.|......+.+.|++++|+..|++.++.. +.++.++..+..+|.+.|++++|+..|++..+.++. +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 44444555555555555555555554432 334445555555555555555555555555444322 4445555555555
Q ss_pred hcCCHhHHHHHHHHHHhCC
Q 006624 207 QEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~ 225 (638)
..|++++|++.|++.++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 5555555555555555444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=4.1e-07 Score=78.02 Aligned_cols=128 Identities=9% Similarity=-0.118 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..+... +.+..++..+...+...|++++|...|++..+..+ .+...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 345555566666666666666666655532 33455555555566666666666666665555432 2455555555556
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTY--SALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
...|++++|.+.|+++....+ .+...+ ...+..+.+.|++++|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 666666666666666555443 233333 22222244445555555555443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.3e-07 Score=76.83 Aligned_cols=127 Identities=12% Similarity=-0.004 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 344455555555555555555555555443 344555555555555555555555555555432 22444555555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHH
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTE--LIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~~ 327 (638)
...|++++|.+.+++..+..+. +...+.. .+..+...|++++|+..++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5555555555555555544332 3333322 222244455555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.3e-06 Score=81.41 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=105.7
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHHCCC---CCC--HH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT----VTYSALISAFGKLGRDISAIRLFDEMKENGL---QPT--AK 267 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~---~~~--~~ 267 (638)
.+...+..+...|++++|.+.+++..+..+..++. ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34445566667777777777777666644321111 1233445556666777777777777764321 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKG---KGCA-L--TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG----CKP-DI 336 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~p-~~ 336 (638)
+++.+...|...|++++|+..+++..+ .... + ...++..+...|...|++++|+..+++.++.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777788888888888888877662 2111 1 12467777788888888888888888776531 111 15
Q ss_pred HHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 006624 337 VLINNLINVLGRAGRLEDA-LKLFNKMEA 364 (638)
Q Consensus 337 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 364 (638)
.++..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6777888888888888888 666776543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8.7e-07 Score=71.54 Aligned_cols=97 Identities=19% Similarity=0.267 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|.+.|+++....+ .+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3444444455555555555555555544332 334444444444455555555555555444432 2234444444445
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006624 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|...++++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 55555555555555444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-07 Score=89.55 Aligned_cols=193 Identities=11% Similarity=-0.015 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.+++..+..+ .+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 4567778888888999999999999988876433 788888888999999999999999999888765 5778888888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRV 317 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 317 (638)
.++...|++++|...|++..+.. |+ ...+...+....+. .++.. +..........+......+... ..|+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 88999999999999988877642 21 11111122211111 11111 1112222233344443333222 26788
Q ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHcc-CCHHHHHHHHHHHHH
Q 006624 318 EDAYGLFMNMLKEGCKPDI-VLINNLINVLGRA-GRLEDALKLFNKMEA 364 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 364 (638)
++|++.++...+. .|+. .....+...+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888888777664 3333 3333344444444 557778888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.5e-07 Score=82.52 Aligned_cols=156 Identities=8% Similarity=-0.005 Sum_probs=70.0
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC----CCCCCHHHHHHHHHHHHccCCh
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG----NCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..|++++|.+.++.+.. .......++..+...+...|++++|.+.+++..... ........+..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 112244555555566666666666666665554411 0001223445555555555555
Q ss_pred HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC
Q 006624 248 ISAIRLFDEMKEN----GLQP--TAKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCA-LTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 248 ~~A~~~~~~m~~~----g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~ 316 (638)
++|.+.+++..+. +..+ ...++..+...+...|++++|...+++.... +.. .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 5555555554432 1011 1233445555555555555555555554321 100 001223444445555555
Q ss_pred HHHHHHHHHHHH
Q 006624 317 VEDAYGLFMNML 328 (638)
Q Consensus 317 ~~~A~~~~~~~~ 328 (638)
+++|...+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.4e-06 Score=70.32 Aligned_cols=99 Identities=10% Similarity=0.069 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
..+|..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHH
Confidence 3445555555555555555555555555432 33444555555555555555555555555544322 244455555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCC
Q 006624 205 LMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...|++++|...|+++....
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~ 107 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD 107 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhC
Confidence 555555555555555555443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3.2e-07 Score=76.92 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+.+.|++++|++.|+++....+ .+...|..+..++...|++++|++.|++..+.. +.+...|..+..+|
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 344444444445555555555555444443 344444444444444444444544444444432 12344444444444
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006624 277 FKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~ 295 (638)
.+.|++++|.+.|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 4445555555444444443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.3e-07 Score=84.29 Aligned_cols=191 Identities=8% Similarity=-0.014 Sum_probs=143.1
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHH-------HHHHHhcCCHhHHHHHHHHHHhCCCCC----CC----------
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSM-------ILMLMQEGYYEKIHELYNEMCNEGNCF----PD---------- 230 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~---------- 230 (638)
..++.+.|.+.|.++.+..+. ....|+.+ ...+.+.++..+++..+.......+.. -+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 578999999999999887544 77888888 577777777777777777766522100 00
Q ss_pred -----HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHH
Q 006624 231 -----TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYT 303 (638)
Q Consensus 231 -----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~ 303 (638)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 2234456778888999999999999888754 544477777889999999999999998665432 111 336
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 304 YTELIKGLGRAGRVEDAYGLFMNMLKEGCKPD--IVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 304 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 77788899999999999999999885433253 3466778888999999999999999998754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.62 E-value=8.4e-07 Score=72.68 Aligned_cols=100 Identities=10% Similarity=-0.045 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|...++..++.. +.+..++..+...+...|++++|+..|++..+.... +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence 45566666666666666666666666665532 334555555555666666666666666655554222 4555555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.+.|++++|.+.|++.....
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHHHHHHHHHHHhC
Confidence 5666666666666666555543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=8.6e-07 Score=74.30 Aligned_cols=103 Identities=9% Similarity=0.014 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|+++.+..+. +...|..+..+|...|++++|++.|++.....+ .+...|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P--~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK--NDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC--CCcHHHHHHH
Confidence 3456777778888888888888888888877543 788888888888888888888888888888775 5667788888
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCH
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTA 266 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 266 (638)
.++.+.|++++|++.|++..+.. |+.
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~ 137 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDE 137 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence 88888888888888888888753 554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=8.9e-07 Score=72.52 Aligned_cols=116 Identities=9% Similarity=-0.010 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|++.|++..+..+ .+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--TFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CchHHHHHHH
Confidence 3445555666666666666666666666554322 455555666666666666666666666655443 3455555555
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 239 SAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..+...|++++|.+.|++..+.. +.+...+..+..++.+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHH
Confidence 55556666666666665555432 1123344444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=9e-07 Score=72.15 Aligned_cols=118 Identities=10% Similarity=-0.075 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+...|++++|...++..+... +.+...+..+...+...|++++|...+++..+..+ .+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHH
Confidence 3455555555555666666666655555432 33445555555555555555555555555544422 134455555555
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
+...|++++|.+.|++.....+ .+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP--DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHhc
Confidence 5555555555555555555443 334444444444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-06 Score=71.13 Aligned_cols=115 Identities=12% Similarity=0.055 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.+..+...+...|++++|.+.|++.....+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444444444555555555544444332 234444444444444444444444444444431 12334444444444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG 315 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 315 (638)
...|++++|.+.+++..+..+. +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 4444444444444444443322 3334444444443333
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.2e-06 Score=78.82 Aligned_cols=190 Identities=8% Similarity=-0.079 Sum_probs=121.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHhhC------------CC------
Q 006624 137 ETRMIGVMWKSIQDMVRSTCVMGPSVLSEI-------VNILGKAKMVNKALSIFYQIKSR------------KC------ 191 (638)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~------ 191 (638)
+.++...|.+.|.++.+.. +-....|..+ ...+.+.++..+++..+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5677777777777777653 4445566655 45555555555555555554441 10
Q ss_pred --CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC--HH
Q 006624 192 --KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPT--AK 267 (638)
Q Consensus 192 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~ 267 (638)
..-...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~---p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG---SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT---CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 0002334456677777888888888888777654 433355666667778888888888887554421 111 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT--VYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
.+..+..++...|++++|++.|++.......|. .........++.+.|+.++|...|+++....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 667777888888888888888888774332143 3355666677788888888888888888764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.57 E-value=7.3e-07 Score=79.44 Aligned_cols=134 Identities=11% Similarity=-0.012 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEMKKL----RCKP-DVYTYNALMSGMVRAGMIDDAYSLLRRMEED----GCVP-- 545 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-- 545 (638)
..++..+...+...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 344444444555555555555555444331 1111 1334555556666666666666666655542 1011
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHS----EIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
....+..+...+...|++++|...+++.... +... -..++..+..++...|++++|.+.+++..+
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1234555666666667777777766665531 1100 122345666677777777777777766553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.2e-06 Score=73.38 Aligned_cols=100 Identities=6% Similarity=-0.154 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 44555666666666777777777776666543 445666666666666666777777666666655332 5556666666
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++..+..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6666666666666666666544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=1.8e-06 Score=83.82 Aligned_cols=124 Identities=6% Similarity=-0.066 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG--------------PSVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
+...|..+...+.+.|++++|...|++.+....... ..++..+..+|.+.|++++|+..|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777777766431111 244444444455555555555555544443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHH
Q 006624 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISA 250 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 250 (638)
.+. +..+|..+..+|...|++++|++.|+++++..+ .+...+..+...+.+.|+.++|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP--NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHHH
Confidence 222 444444444445555555555555554444433 3334444444444444444444
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=5.6e-07 Score=75.52 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...+..+...+.+.|++++|+..|+++....+ .+...|..+..++...|++++|++.|++..+.. +.+...+..+..
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34444555555555555555555555555443 345555555555555555555555555555542 224455555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhC
Q 006624 275 IYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 275 ~~~~~g~~~~A~~~~~~m~~~ 295 (638)
+|...|++++|.+.|++..+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-06 Score=83.90 Aligned_cols=123 Identities=11% Similarity=-0.032 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 160 PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT--------------ANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
...+..+...+.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|++.|++++...
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34555666666666666666666666665533211 3556666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 226 NCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
+ .+...|..+..++...|++++|+..|++..+.. +.+..++..+..++.+.|+.++|
T Consensus 227 p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 S--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 455555566666666666666666666655542 22445555555555555555555
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.7e-07 Score=77.40 Aligned_cols=118 Identities=11% Similarity=0.088 Sum_probs=48.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCH--hHH
Q 006624 138 TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM-LMQEGYY--EKI 214 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 214 (638)
.|++++|...++..+... +.+...+..+...+...|++++|...|++..+..+. +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 334444444444443321 233344444444444444444444444444433211 33344444444 3344444 444
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 215 HELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+..|+++....+ .+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS--NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444444332 2333444444444444444444444444444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=9.7e-07 Score=76.77 Aligned_cols=122 Identities=11% Similarity=0.085 Sum_probs=76.3
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHccCCh--
Q 006624 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-FGKLGRD-- 247 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~-- 247 (638)
...|++++|...|++..+..+ .+...|..+...|...|++++|+..|+++....+ .+...+..+... +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence 345666777777776665533 2566777777777777777777777777766554 455566666666 5566666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
++|...++++.+.. +.+...+..+...+...|++++|...+++..+..
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 77777777766653 2345566666666677777777777776666654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=9e-05 Score=70.28 Aligned_cols=183 Identities=11% Similarity=0.040 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC--HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC-hHHHHH
Q 006624 176 VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY--YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR-DISAIR 252 (638)
Q Consensus 176 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~ 252 (638)
+++++.+++.+....++ +..+|+.-...+.+.|+ ++++++.++++.+..+ .|...|+.-.-.+...|. ++++++
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp--rNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE--RNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 56677777777665444 66777776666666663 6777777777777665 566666666666666666 477777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----
Q 006624 253 LFDEMKENGLQPTAKIYTTLVSIYFKL--------------GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA---- 314 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---- 314 (638)
.++++++.. +-|..+|+.....+.+. +.++++++.+.......+. |...|+-+-..+.+.
T Consensus 167 ~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 167 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcc
Confidence 777777654 33666666665555544 3466777777777766554 666665433333333
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHccCCHHHHHHHHHHHHH
Q 006624 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLIN---VLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 364 (638)
+.++++++.++++.+..+. +...+..++. .....+..+++...+.++.+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3466777777777775332 2222222221 11234556666677777665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.9e-07 Score=83.03 Aligned_cols=120 Identities=10% Similarity=-0.049 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD--------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
...+..+...+.+.|++++|++.|++.....+..++ ...+..+...+.+.|++++|+..+++..+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445566666677777777777777777664432121 133444444444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR 316 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 316 (638)
. +.+...+..+..+|...|++++|.+.|++..+..+. +...+..+..++...++
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKE 171 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHH
Confidence 1 223444444444444444444444444444443222 33334444333333333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.8e-06 Score=68.97 Aligned_cols=96 Identities=9% Similarity=-0.046 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|......+.+.|++++|...|++.++.. +.++..+..+..++.+.|++++|+..|++..+..+. +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344445555555555555555555554432 334445555555555555555555555555444322 344555555555
Q ss_pred HhcCCHhHHHHHHHHHHh
Q 006624 206 MQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~ 223 (638)
...|++++|++.|++...
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 555555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=7.9e-06 Score=64.93 Aligned_cols=97 Identities=18% Similarity=0.056 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 3444455555555555555555555554433 344445555555555555555555555554432 2234445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhC
Q 006624 276 YFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~ 295 (638)
+...|++++|.+.+++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 55555555555555555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-06 Score=68.02 Aligned_cols=95 Identities=17% Similarity=0.124 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.|..+...+.+.|++++|++.|++.++..+ .+...|..+...+.+.|++++|+..+++..+.. +.+...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344444444445555555555555444433 334444444444444444444444444444432 12344444444444
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 006624 277 FKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~ 294 (638)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 445555555544444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.2e-06 Score=72.32 Aligned_cols=102 Identities=11% Similarity=-0.001 Sum_probs=83.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...|..+...+.+.|++++|+..|+..+... +.+...+..+..+|.+.|++++|+..|++..+..+. +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 45678888888888899999988888888754 557788888888888888888888888888877543 6788888888
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNC 227 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~ 227 (638)
+|...|++++|++.|++.++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 888888888888888888876653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.3e-06 Score=64.80 Aligned_cols=98 Identities=11% Similarity=-0.032 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+...|++++|...++..+... +.++..+..+...+...|++++|...+++..+..+. +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 345555555555555555555555555432 334455555555555555555555555555444221 444555555555
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 006624 206 MQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~ 225 (638)
...|++++|.+.|++..+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 55555555555555555543
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=2.2e-06 Score=71.26 Aligned_cols=100 Identities=8% Similarity=-0.118 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+...+..+...+.+.|++++|...|+..+... +.++..+..+..++.+.|++++|+..|++.....+. +...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHH
Confidence 34455566666677777777777777766643 445666666677777777777777777776665433 5566666667
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+|...|++++|++.|++.....
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777777666544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-06 Score=67.90 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=20.4
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
+.+.+.|++++|+..|++..+..+. +...|+.+..+|.+.|++++|++.|++.
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 3333334444444444333333211 3333333444444444444444444433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00035 Score=66.23 Aligned_cols=219 Identities=6% Similarity=-0.010 Sum_probs=166.3
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 006624 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRM----------IGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.+.|+.++..+.... +.+..+|+.--.++...+. ++++...++.++... +-+..+|+--...+.+.|
T Consensus 46 s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~ 122 (331)
T 3dss_A 46 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 122 (331)
T ss_dssp SHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence 357888888776554 4567788877666655444 678888888888754 667888888777777877
Q ss_pred --CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc-------
Q 006624 175 --MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL------- 244 (638)
Q Consensus 175 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 244 (638)
.+++++.+++++.+..+. |..+|+...-++...|. ++++++.+++++..++ .|...|+.....+.+.
T Consensus 123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p--~N~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHHSCCC---
T ss_pred cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhhhccccc
Confidence 489999999999988655 88999998888888888 6999999999999886 6888887776666655
Q ss_pred -------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006624 245 -------GRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL-----------GEVEKALGLVQEMKGKGCALTVYTYTE 306 (638)
Q Consensus 245 -------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~~~~~~~~~ 306 (638)
+.++++++.+...+... +-|..+|+.+-..+.+. +.++++++.++++.+..+. +...+..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd-~~w~l~~ 277 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPE-NKWCLLT 277 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcc-cchHHHH
Confidence 45789999999998764 45788888776666665 4588999999999987654 4444433
Q ss_pred HHH---HHHhcCCHHHHHHHHHHHHHcC
Q 006624 307 LIK---GLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 307 li~---~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
++. .....|..+++...+.++++..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 278 IILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 332 2234677888888999988753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=6.2e-06 Score=66.95 Aligned_cols=106 Identities=5% Similarity=-0.061 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CC----HHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
..+|..+...+.+.|++++|+..|++.+... +.+...|..+..+|.+.|++++|+..|++..+..+. ++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4578889999999999999999999998864 567889999999999999999999999998765221 11 3467
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
..+..++...|++++|++.|++.+... ||....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF---RDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS---CCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC---cCHHHH
Confidence 788888999999999999999988754 555443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=6.2e-06 Score=73.14 Aligned_cols=118 Identities=10% Similarity=-0.023 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHhCCCHHHHHHHHHHHhhC
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP----------------SVLSEIVNILGKAKMVNKALSIFYQIKSR 189 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 189 (638)
..|..+...+.+.|++++|...|++.+... +.++ .++..+..++.+.|++++|+..+++..+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 455566667777777777777777766632 1111 34444444444555555555555444443
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 190 KCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
.+ .+...+..+..+|...|++++|++.|++.....+ .+...+..+...+...++.
T Consensus 118 ~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 118 DK-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP--NNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp ST-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHHHH
T ss_pred Cc-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHHH
Confidence 21 1344444444444455555555555544444332 2333344444443333333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.7e-06 Score=65.58 Aligned_cols=95 Identities=14% Similarity=0.049 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCC--CHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFP--DTVTYSALIS 239 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~ 239 (638)
.+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|++.|++..+..+ . +...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~~l~~ 84 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE--DEYNKDVWAAKAD 84 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc--ccchHHHHHHHHH
Confidence 3344444444455555555555444443221 344444455555555555555555555544432 2 3444444444
Q ss_pred HHHcc-CChHHHHHHHHHHHH
Q 006624 240 AFGKL-GRDISAIRLFDEMKE 259 (638)
Q Consensus 240 ~~~~~-g~~~~A~~~~~~m~~ 259 (638)
.+... |++++|.+.+++..+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHhCCHHHHHHHHHHHhh
Confidence 45555 555555555544444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-06 Score=69.24 Aligned_cols=94 Identities=15% Similarity=-0.027 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG 242 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (638)
+..+...+.+.|++++|...|+++....+. +...|..+..++.+.|++++|+..|++.....+ .+...+..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI--NEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC--CCcHHHHHHHHHHH
Confidence 334444445555555555555555444222 444455555555555555555555555554443 33344444445555
Q ss_pred ccCChHHHHHHHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|.+.|+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.7e-05 Score=66.17 Aligned_cols=101 Identities=7% Similarity=-0.138 Sum_probs=73.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006624 123 HNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTY 198 (638)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 198 (638)
.+...|..+...+...|++++|...|++.++. .|+ ...+..+...+...|++++|+..|++..+..+. +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 45677777888888888888888888887773 344 566777777777777788877777777665322 56677
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
..+..++...|++++|...|++.....+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 7777777777777777777777776553
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=66.37 Aligned_cols=94 Identities=14% Similarity=-0.034 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+..+...+...|++++|...|.+..+..+. +...|..+...+...|++++|+..|++.....+ .+...+..+...
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~ 86 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--hhHHHHHHHHHH
Confidence 33334444444444444444444443333211 333444444444444444444444444444332 233334444444
Q ss_pred HHccCChHHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEM 257 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m 257 (638)
+...|++++|...|++.
T Consensus 87 ~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 87 QLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 44444444444444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.8e-06 Score=67.30 Aligned_cols=102 Identities=6% Similarity=-0.111 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 006624 122 EHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSM 201 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 201 (638)
+.+...|..+...+...|++++|...|+..+... +.+...+..+..++...|++++|...|++..+..+. +...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHH
Confidence 3468899999999999999999999999998864 567889999999999999999999999999887544 78899999
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
..++...|++++|+..|++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999988754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=5.6e-06 Score=65.16 Aligned_cols=98 Identities=11% Similarity=0.086 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCC--CHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQP--TAKIYTTL 272 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~l 272 (638)
...+..+...+...|++++|...|++..+..+ .+...+..+...+...|++++|.+.+++..+.. +. +...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence 34445555555666666666666666555443 344555555555555555555555555555542 12 34455555
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHhC
Q 006624 273 VSIYFKL-GEVEKALGLVQEMKGK 295 (638)
Q Consensus 273 i~~~~~~-g~~~~A~~~~~~m~~~ 295 (638)
...+.+. |++++|.+.++.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5555555 5555555555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.9e-05 Score=78.39 Aligned_cols=197 Identities=10% Similarity=0.016 Sum_probs=125.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCH
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPT----------------ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDT 231 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 231 (638)
+.+.+.|++++|++.|.++.+...... ..++..++..|.+.|++++|.+.+..+.......++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 344555566666666555544321110 1235667788888888888888888766532221222
Q ss_pred ----HHHHHHHHHHHccCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC
Q 006624 232 ----VTYSALISAFGKLGRDISAIRLFDEMKE----NGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGK----GCA 298 (638)
Q Consensus 232 ----~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~ 298 (638)
...+.+...+...|+.+.|.++++.... .+..+. ..++..+...|...|++++|..++++.... +..
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1233334444456788888888877653 222222 457778888899999999999888877543 111
Q ss_pred -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CC-C--HHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 299 -LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE--GC-KP-D--IVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 299 -~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
....++..++..|...|++++|..++++.... .. .| . ...+..+...+...|++++|...|.+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 12457778888899999999999988887652 11 11 1 23556667777888999998887776643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-05 Score=68.66 Aligned_cols=99 Identities=16% Similarity=-0.017 Sum_probs=75.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALI 238 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 238 (638)
+...+..+...+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|++.|++.+...+ .+...|..+.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP--KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 3456777777788888888888888887776433 677788888888888888888888888877765 5677777888
Q ss_pred HHHHccCChHHHHHHHHHHHHC
Q 006624 239 SAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 239 ~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+...|++++|.+.|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8888888888888888877764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.5e-05 Score=65.08 Aligned_cols=98 Identities=18% Similarity=0.047 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHH
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT----ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTY 234 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 234 (638)
+...+..+...+.+.|++++|...|++..+. .|+ ...|..+...|...|++++|++.+++.....+ .+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG--GDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc--cCHHHH
Confidence 4455566666666666666666666666654 233 45555666666666666666666666655543 345555
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 235 SALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 235 ~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+...+...|++++|.+.|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55556666666666666666665553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.30 E-value=3e-05 Score=78.30 Aligned_cols=197 Identities=11% Similarity=0.001 Sum_probs=132.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-Cc
Q 006624 414 IDGFCKTNRVEKAHLLLEEMEEKGFPPC----------------PAAYCSLINGYGKAKRYEAANELFLELKEYCGC-SS 476 (638)
Q Consensus 414 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 476 (638)
...+.+.|++++|++.|.++.+...... ..++..++..|.+.|++++|.+.+..+.+.... ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778888888888888876531111 123677888888889999988888877653111 11
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--
Q 006624 477 A----RVYAVMIKHFGKCGRLSDAVDLFNEMKK----LRCKPD-VYTYNALMSGMVRAGMIDDAYSLLRRMEED--GC-- 543 (638)
Q Consensus 477 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 543 (638)
. .+.+.+...+...|++++|..+++.... .+..+. ..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2334444455567888888888877643 222222 456777888888999999999998887643 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CC-CC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 544 VP-DINSHNIILNGLAKSGGPKRAMEIFTKMQHS--EI-KP-D--AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 544 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
.+ ...++..++..|...|++++|..++++.... .+ .| . ...+..+...+...|++++|...+.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1457788888889999999999998887641 11 11 1 24566667777888999998888777653
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.29 E-value=6.1e-06 Score=67.10 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=23.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+...+...|++++|...|++..+..+ .+...+..+...+...|++++|...|+++..
T Consensus 9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 9 ELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 333344444444444444444433321 1333444444444444444444444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=8e-06 Score=65.59 Aligned_cols=94 Identities=4% Similarity=-0.109 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 006624 129 MALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE 208 (638)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 208 (638)
..+...+.+.|++++|+..++..++.. +.+...+..+..++.+.|++++|+..|++..+..+. +...+..+..++.+.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 344445555555555555555555532 334455555555555555555555555555544322 444555555555555
Q ss_pred CCHhHHHHHHHHHHhC
Q 006624 209 GYYEKIHELYNEMCNE 224 (638)
Q Consensus 209 g~~~~A~~~~~~~~~~ 224 (638)
|++++|+..|++.++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=8.2e-06 Score=66.29 Aligned_cols=111 Identities=10% Similarity=0.009 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC--CC----HHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK--PT----ANTY 198 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~ 198 (638)
...|..+...+...|++++|...++..+... +.+...+..+...+...|++++|...|++..+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4678889999999999999999999998864 567889999999999999999999999998776321 12 7788
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
..+..++...|++++|.+.|+++.... |+......+..
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHH
Confidence 889999999999999999999998865 55554444443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=7.3e-06 Score=65.82 Aligned_cols=92 Identities=12% Similarity=-0.040 Sum_probs=48.0
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|+..|++..+..+. +...|..+..++...|++++|+..|++.+...+ .+...+..+...+...
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 3444455555555555555555544322 455555555555555555555555555555443 3444555555555555
Q ss_pred CChHHHHHHHHHHHH
Q 006624 245 GRDISAIRLFDEMKE 259 (638)
Q Consensus 245 g~~~~A~~~~~~m~~ 259 (638)
|++++|+..+++..+
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-06 Score=68.69 Aligned_cols=87 Identities=11% Similarity=-0.029 Sum_probs=44.6
Q ss_pred cCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHH
Q 006624 138 TRMIGVMWKSIQDMVRST--CVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIH 215 (638)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 215 (638)
.|++++|+..|++.++.+ -+.+..++..+..+|.+.|++++|+..|++..+..+. +...+..+..++.+.|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 355555555555555532 1223345555555555556666666665555554332 4555555555555566666666
Q ss_pred HHHHHHHhCC
Q 006624 216 ELYNEMCNEG 225 (638)
Q Consensus 216 ~~~~~~~~~~ 225 (638)
+.|++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6555555544
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.3e-05 Score=60.92 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=50.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGP---SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPT---ANTYNSMIL 203 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 203 (638)
.+...+.+.|++++|...++.+++.. +.++ ..+..+..++.+.|++++|...|+++.+..+. + ..++..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34455556666666666666655532 1222 35555555566666666666666665554222 2 444555555
Q ss_pred HHHhcCCHhHHHHHHHHHHhCC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
++.+.|++++|.+.|+++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 5666666666666666655544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-05 Score=82.03 Aligned_cols=89 Identities=9% Similarity=-0.073 Sum_probs=39.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhH
Q 006624 134 CLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEK 213 (638)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 213 (638)
.+.+.|++++|.+.+++.++.. +.+..++..+..+|.+.|++++|+..|++..+..+. +..+|..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3344444444444444444431 223444444444444444444444444444443221 34444444444444444444
Q ss_pred HHHHHHHHHhC
Q 006624 214 IHELYNEMCNE 224 (638)
Q Consensus 214 A~~~~~~~~~~ 224 (638)
|++.|++..+.
T Consensus 93 A~~~~~~al~~ 103 (477)
T 1wao_1 93 ALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=68.16 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
++..+...+...|++++|.+.+++........++ ...+..+...+...|++++|.+.+++..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444555555555555555555554432110011 2233444444444555555555444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.5e-05 Score=67.50 Aligned_cols=135 Identities=12% Similarity=-0.055 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCC-C----C
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCV-MG----PSVLSEIVNILGKAKMVNKALSIFYQIKSRKCK-P----T 194 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~ 194 (638)
..++..+...+...|++++|...+++.+..... .+ ..++..+...+...|++++|...|++..+.... + .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 457888999999999999999999987764111 11 147888999999999999999999987653111 1 1
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
...+..+...+...|++++|.+.+++.........+ ...+..+...+...|++++|.+.+++..+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 557888889999999999999999988653211011 23455666666667777777777666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.7e-05 Score=60.05 Aligned_cols=92 Identities=8% Similarity=-0.030 Sum_probs=37.1
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCH---HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHH
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTA---NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-TVTYSALISAFG 242 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 242 (638)
...+.+.|++++|...|+++.+..+. +. ..+..+..++.+.|++++|+..|+++....+..+. ...+..+...+.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 33444444444444444444433211 11 23344444444444444444444444443321000 233333444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 006624 243 KLGRDISAIRLFDEMKE 259 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~ 259 (638)
..|++++|...|+++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444433
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.11 E-value=3.3e-05 Score=78.32 Aligned_cols=89 Identities=11% Similarity=-0.024 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 195 ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 195 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
...|..+..+|.+.|++++|+..|++++...+ .+...|..+..++...|++++|+..|+++.+.. +-+..++..+..
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 393 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISM 393 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34555555555555666666666655555543 345555555555555666666666665555542 123445555555
Q ss_pred HHHhcCCHHHHH
Q 006624 275 IYFKLGEVEKAL 286 (638)
Q Consensus 275 ~~~~~g~~~~A~ 286 (638)
++.+.++.+++.
T Consensus 394 ~~~~~~~~~~a~ 405 (457)
T 1kt0_A 394 CQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.09 E-value=4e-05 Score=77.72 Aligned_cols=133 Identities=13% Similarity=0.056 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD-------------TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....|..+...+.+.|++++|+..|++.+...+..++ ...|..+..++.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3445555555555555555555555555554321110 466777777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHH
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYG-LFMNML 328 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~-~~~~~~ 328 (638)
. +.+...|..+..+|...|++++|+..|++..+..+. +...+..+..++.+.++.+++.+ .+..|.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 335677777777777777777777777777776543 55566677777777777766653 444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-05 Score=75.48 Aligned_cols=139 Identities=9% Similarity=-0.013 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..|..+...+.+.|++++|+..|++.++.. +.. ......+ +..+.. ..+...|..+..+|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~-------~~~~~~-~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDA-------DGAKLQ-PVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHH-------HHGGGH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChH-------HHHHHH-HHHHHHHHHHHHHH
Confidence 346666777777777777777777665510 000 0000000 000010 11445566666666
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKA 285 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 285 (638)
.+.|++++|++.++++++..+ .+...|..+..++...|++++|++.|++..+.. +.+...+..+...+.+.++.+++
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666553 455666666666666666666666666666542 22455566666666666666555
Q ss_pred HH
Q 006624 286 LG 287 (638)
Q Consensus 286 ~~ 287 (638)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00026 Score=73.42 Aligned_cols=172 Identities=11% Similarity=0.003 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
..++|++.++++...++. +..+|+.-..++...|+ ++++++.++.+.+.++ .+..+|+.-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p--K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 345678888888776544 66777777777776666 7888888888888775 5677777777777777
Q ss_pred C--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-------
Q 006624 245 G--RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG-EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA------- 314 (638)
Q Consensus 245 g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~------- 314 (638)
| +++++++.++++.+.. +-|..+|+.-...+.+.| .++++++.++++.+.++. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccc
Confidence 7 6688888888888764 347777887777777777 788888888888877665 777777766665542
Q ss_pred -------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006624 315 -------GRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRL 352 (638)
Q Consensus 315 -------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 352 (638)
+.++++++.+++.+...+. |...|+.+...+.+.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4567888888888876544 667777777777666653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.06 E-value=1.6e-05 Score=81.06 Aligned_cols=122 Identities=15% Similarity=0.048 Sum_probs=98.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHcc
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKL 244 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (638)
.+...+.+.|++++|++.|++..+..+. +..+|..+..+|.+.|++++|++.|++..+..+ .+...+..+..++...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p--~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHc
Confidence 3445667889999999999999887433 689999999999999999999999999999875 6788999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006624 245 GRDISAIRLFDEMKENGLQPTAKIYTTLVSI--YFKLGEVEKALGLVQ 290 (638)
Q Consensus 245 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 290 (638)
|++++|++.+++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999998863 2245566666666 888999999999988
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=4.8e-05 Score=74.56 Aligned_cols=138 Identities=9% Similarity=0.032 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+.+.|++++|++.|++.++..+ +.. ..... ++..+. -+.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~---~~~----------~~~~~-------~~~~~~-~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE---GSR----------AAAED-------ADGAKL-QPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHH----------HHSCH-------HHHGGG-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh---cCc----------cccCh-------HHHHHH-HHHHHHHHHHHHHH
Confidence 4466777788888888888888888776210 000 00000 000000 01133445555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDA 355 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 355 (638)
|.+.|++++|++.+++.++..+. +...|..+..+|...|++++|+..|++.++.... +...+..+...+...++.+++
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554332 4555555555555555566665555555554322 444555555555555554444
Q ss_pred H
Q 006624 356 L 356 (638)
Q Consensus 356 ~ 356 (638)
.
T Consensus 361 ~ 361 (370)
T 1ihg_A 361 E 361 (370)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1e-05 Score=64.52 Aligned_cols=87 Identities=13% Similarity=0.085 Sum_probs=57.5
Q ss_pred hCCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 172 KAKMVNKALSIFYQIKSRK--CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
..|++++|+..|++..+.+ .+.+...+..+..+|...|++++|++.|++.++..+ .+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP--NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCHHH
Confidence 3567777777777777653 122456677777777777777777777777777665 456667777777777777777
Q ss_pred HHHHHHHHHHC
Q 006624 250 AIRLFDEMKEN 260 (638)
Q Consensus 250 A~~~~~~m~~~ 260 (638)
|++.+++..+.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77777776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.03 E-value=6e-05 Score=62.40 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=54.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCC------C-----HHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-------CC
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKP------T-----ANTYNSMILMLMQEGYYEKIHELYNEMCNE-------GN 226 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~ 226 (638)
.....+.+.|++++|+..|++..+..+.. + ...|+.+..++.+.|++++|+..|++.+.. .+
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 33444445555555555555554432210 1 226677777777777777777777777665 43
Q ss_pred CCCCHHHH----HHHHHHHHccCChHHHHHHHHHHHH
Q 006624 227 CFPDTVTY----SALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 227 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
.+...| .....++...|++++|+..|++..+
T Consensus 96 --d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 --DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp --THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 344555 6666666677777777777766654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.3e-05 Score=63.97 Aligned_cols=100 Identities=5% Similarity=-0.099 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CC----------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRS-------TC----------VMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 187 (638)
...+......+.+.|++++|+..|...+.. .. +.+..++..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888888888888888887663 00 1112344444445555555555555555544
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 188 SRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 188 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+..+. +...|..+..+|...|++++|+..|++.+...
T Consensus 91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 44222 44444455555555555555555555544443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=7.7e-05 Score=63.39 Aligned_cols=98 Identities=15% Similarity=0.042 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhC--------CC---------CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSR--------KC---------KPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
..+......+.+.|++++|+..|.+.... .+ +.+...|..+..+|.+.|++++|+..+++.+.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45666778888899999999988887664 00 11335667777777777777777777777777
Q ss_pred CCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 224 EGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 224 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
..+ .+...|..+..++...|++++|...|++..+.
T Consensus 92 ~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REE--TNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCC--cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 56667777777777777777777777777764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00066 Score=70.41 Aligned_cols=172 Identities=10% Similarity=0.056 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcC--
Q 006624 459 EAANELFLELKEYCGCSSARVYAVMIKHFGKCGR----------LSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAG-- 526 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-- 526 (638)
++|.+.++.+... .+.+..+|+.-..++...|+ +++++..++.+.+.. +.+..+|+.-...+.+.|
T Consensus 46 eeal~~~~~~l~~-nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGA-NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHH-CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 4445555555553 22334445544444444444 677777777776653 335566766666667777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----------
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG-GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA---------- 595 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---------- 595 (638)
+++++++.++++.+.... |..+|+.-...+.+.| .++++++.++++++.... |...|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 568888888888876433 6777777777777777 778888888888765432 666777666666553
Q ss_pred ----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccCCccC
Q 006624 596 ----GMFEEAARLMKDMNAKGFEYDQITYSSILEAVGKVDEDRN 635 (638)
Q Consensus 596 ----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 635 (638)
+.++++.+.+++..... +-|...|..+-..+.+.+..++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55788888888887642 3455677777777776665443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-05 Score=75.69 Aligned_cols=150 Identities=9% Similarity=-0.046 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
...|..+...+.+.|++++|...|+..+.. .|+.. .+...|+.+++...+. ...|+.+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345667777777888888888888877663 23322 1122233333332211 1367777788
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHH
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI-YFKLGEVE 283 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~g~~~ 283 (638)
|.+.|++++|+..|++.+...+ .+...|..+..++...|++++|.+.|++..+.. +-+...+..+... ....+..+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEE--KNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877664 567778888888888888888888888876542 1244455555554 33455667
Q ss_pred HHHHHHHHHHhCC
Q 006624 284 KALGLVQEMKGKG 296 (638)
Q Consensus 284 ~A~~~~~~m~~~~ 296 (638)
++.+.|..|....
T Consensus 317 ~a~~~~~~~l~~~ 329 (338)
T 2if4_A 317 KQKEMYKGIFKGK 329 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHhhCCC
Confidence 7777887777653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00015 Score=59.97 Aligned_cols=100 Identities=8% Similarity=-0.038 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------CHH-----HHHHHHHHHHhCCCHHHHHHHHHHHhhC----
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVM------GPS-----VLSEIVNILGKAKMVNKALSIFYQIKSR---- 189 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 189 (638)
...+......+.+.|++++|+..|+..++..... +.. .|+....++.+.|++++|+..|++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3466778888999999999999999998853221 233 8999999999999999999999999886
Q ss_pred ---CCCCCHHHH----HHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 190 ---KCKPTANTY----NSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 190 ---~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+. +...| .....++...|++++|++.|++.++..
T Consensus 91 ~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 543 67788 999999999999999999999998754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.89 E-value=3.6e-05 Score=74.60 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSI 275 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 275 (638)
..+..+...+.+.|++++|+..|++.+... |+... +...|+.+++...+. ..+|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345556666666677777777777666543 33221 112222222222110 1245555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCHHH
Q 006624 276 YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINV-LGRAGRLED 354 (638)
Q Consensus 276 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 354 (638)
|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++.++.... +...+..+... ....+..+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666555554332 4555555555666666666666666555543221 23333333333 223344455
Q ss_pred HHHHHHHHHH
Q 006624 355 ALKLFNKMEA 364 (638)
Q Consensus 355 A~~~~~~~~~ 364 (638)
+...|..+..
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 5555555543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0004 Score=56.96 Aligned_cols=82 Identities=11% Similarity=-0.051 Sum_probs=33.0
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 006624 243 KLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----A 314 (638)
Q Consensus 243 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~ 314 (638)
..+.+++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .
T Consensus 37 ~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 37 SQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp TTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred cCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCC
Confidence 3333444444444444432 33344444444443 344444444444444332 23333333333333 3
Q ss_pred CCHHHHHHHHHHHHHc
Q 006624 315 GRVEDAYGLFMNMLKE 330 (638)
Q Consensus 315 g~~~~A~~~~~~~~~~ 330 (638)
+++++|..+|++..+.
T Consensus 111 ~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 111 KNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHC
Confidence 4444444444444433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.84 E-value=7.9e-05 Score=75.40 Aligned_cols=124 Identities=8% Similarity=-0.007 Sum_probs=72.5
Q ss_pred HhCCCHHHHHHHHHHHhhC-----CCC-C-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC-----CCCCCCH-HHHHHH
Q 006624 171 GKAKMVNKALSIFYQIKSR-----KCK-P-TANTYNSMILMLMQEGYYEKIHELYNEMCNE-----GNCFPDT-VTYSAL 237 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~-~~~~~l 237 (638)
..+|++++|+.++++..+. |.. | ...+++.|..+|...|++++|..++++.+.. |+.+|++ .+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 3556666666666555331 111 1 2345666666777777777776666665422 4433443 456677
Q ss_pred HHHHHccCChHHHHHHHHHHHHC-----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 238 ISAFGKLGRDISAIRLFDEMKEN-----GL-QP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 238 ~~~~~~~g~~~~A~~~~~~m~~~-----g~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 294 (638)
...|...|++++|..++++..+. |. .| ...+.+.+..++...+.+++|+.++..+.+
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777665531 21 11 133455566666677777777777777765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00083 Score=55.03 Aligned_cols=81 Identities=9% Similarity=-0.047 Sum_probs=33.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cC
Q 006624 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AG 596 (638)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g 596 (638)
.+.+++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| ++..+..|...|.. .+
T Consensus 38 g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~ 111 (138)
T 1klx_A 38 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 111 (138)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCc
Confidence 333444444444444432 33334444444443 344444444444444332 23333444444444 44
Q ss_pred CHHHHHHHHHHHHhC
Q 006624 597 MFEEAARLMKDMNAK 611 (638)
Q Consensus 597 ~~~~A~~~~~~m~~~ 611 (638)
++++|.+++++..+.
T Consensus 112 d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 112 NEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00015 Score=73.27 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=45.7
Q ss_pred HHhcCCHhHHHHHHHHHHhC-----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC-----C-CCC-CHHHHHH
Q 006624 205 LMQEGYYEKIHELYNEMCNE-----GNCFPD-TVTYSALISAFGKLGRDISAIRLFDEMKEN-----G-LQP-TAKIYTT 271 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----g-~~~-~~~~~~~ 271 (638)
+..+|++++|+.++++.+.. |+..|+ ..+++.|...|...|++++|..++++..+. | -.| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666666666665432 222222 234566666666666666666666555431 1 011 1334555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMK 293 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~ 293 (638)
|...|...|++++|+.++++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555555555555555443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=4.7e-05 Score=59.70 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+..+...+.+.|++++|+..|++..+..+. +...|..+..++.+.|++++|++.|++.+...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 4444445555555555555555555444222 44555555555555555555555555555543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00016 Score=57.11 Aligned_cols=78 Identities=6% Similarity=-0.009 Sum_probs=40.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 144 MWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
|+..+++.++.. +.+...+..+...+...|++++|+..|++..+..+. +...|..+..+|...|++++|...|++...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 334455555555555555555555555555544322 445555555555555555555555555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0001 Score=60.87 Aligned_cols=84 Identities=7% Similarity=-0.001 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH----------hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY----------EKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
+.+++|...+++..+..+. +...|+.+..++.+.+++ ++|+..|++.++..+ .+...|..+..+|..
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHH
Confidence 3445555555555544332 555555555555554443 356666666655554 345555555555554
Q ss_pred cC-----------ChHHHHHHHHHHHHC
Q 006624 244 LG-----------RDISAIRLFDEMKEN 260 (638)
Q Consensus 244 ~g-----------~~~~A~~~~~~m~~~ 260 (638)
.| ++++|++.|++.++.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 43 555666666655553
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00046 Score=51.45 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhC
Q 006624 163 LSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNE 224 (638)
Q Consensus 163 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 224 (638)
+..+...+.+.|++++|...|++..+..+. +...+..+...+.+.|++++|++.|++....
T Consensus 12 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 333344444444444444444444333211 3334444444444444444444444444443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=55.70 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
++..+..+...|.+.|++++|+..|++..+..+. +...|..+..+|...|++++|++.|++.+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555555555555544322 344555555555555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00045 Score=54.50 Aligned_cols=79 Identities=5% Similarity=-0.042 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHH
Q 006624 178 KALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEM 257 (638)
Q Consensus 178 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 257 (638)
+|+..|++..+..+. +...+..+...|...|++++|+..|++.....+ .+...|..+...+...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455566666555332 566666666777777777777777777666554 45556666666666666666666666666
Q ss_pred HH
Q 006624 258 KE 259 (638)
Q Consensus 258 ~~ 259 (638)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00055 Score=53.34 Aligned_cols=88 Identities=8% Similarity=0.010 Sum_probs=49.9
Q ss_pred CHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-------HH
Q 006624 511 DVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-------AV 583 (638)
Q Consensus 511 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~ 583 (638)
+...+..+...+...|++++|++.|++.++.. +.+...+..+..++.+.|++++|++.+++..+. .|+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence 34455566666666666666666666666542 224566666666666666666666666666643 233 33
Q ss_pred HHHHHHHHHHhcCCHHHH
Q 006624 584 SYNTILGCLSRAGMFEEA 601 (638)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A 601 (638)
.+..+..++...|++++|
T Consensus 80 ~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHhHhhh
Confidence 344444444444444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00018 Score=59.38 Aligned_cols=99 Identities=11% Similarity=0.168 Sum_probs=72.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 136 DETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM----------VNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
.+.+++++|.+.++..++.. +.++..++.+..++.+.++ +++|+..|++..+..+. +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 34556677777777776653 5566777777777776665 45999999999887554 778899999999
Q ss_pred HhcC-----------CHhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 206 MQEG-----------YYEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 206 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
...| ++++|++.|++.++.. |+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~---P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhC---CCCHHHHHHHH
Confidence 8774 8999999999999976 55555544433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00063 Score=50.69 Aligned_cols=82 Identities=18% Similarity=0.194 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLV 273 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 273 (638)
+...+..+...+...|++++|+..|++.....+ .+...+..+...+.+.|++++|.+.+++..+.. +.+...+..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~ 84 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 345566666777777777777777777766554 455666666677777777777777777666542 22445555555
Q ss_pred HHHHh
Q 006624 274 SIYFK 278 (638)
Q Consensus 274 ~~~~~ 278 (638)
..+.+
T Consensus 85 ~~~~~ 89 (91)
T 1na3_A 85 NAKQK 89 (91)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 54443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0016 Score=49.68 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
+...+..+...|.+.|++++|++.|++.++..+ .+...|..+..++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777777777777777777777777664 4555677777777777777777777776654
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0097 Score=56.61 Aligned_cols=65 Identities=12% Similarity=0.112 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 345555555555555556666666665555554 35555555555555566666666666555554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.076 Score=50.54 Aligned_cols=75 Identities=13% Similarity=0.023 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 006624 298 ALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNT 376 (638)
Q Consensus 298 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 376 (638)
+.+..+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|+.++|.+.|++....+ |...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHHH
Confidence 3477888888777777899999999999998875 677788888888888999999999998888754 66666543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0061 Score=60.48 Aligned_cols=84 Identities=6% Similarity=-0.100 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCCC-HHHHHHHHHH
Q 006624 526 GMIDDAYSLLRRMEED---GCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQH-----SE-IKPD-AVSYNTILGC 591 (638)
Q Consensus 526 g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~~~~l~~~ 591 (638)
|++++|+.++++.++. -+.|+ ..+++.|...|...|++++|..++++..+ .| -.|+ ..+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11122 34556666666666666666666666543 12 1222 3457777777
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006624 592 LSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~ 609 (638)
|...|++++|..++++..
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777777655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.017 Score=43.07 Aligned_cols=69 Identities=4% Similarity=-0.031 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
+.++..+..+..++...++ .++|..++++..+..+. ++.+...+...+.+.|++++|+..|+++....+
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455555555555543333 46666666666655433 556666666666666666666666666666543
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.091 Score=47.86 Aligned_cols=93 Identities=14% Similarity=0.099 Sum_probs=66.5
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCH
Q 006624 247 DISAIRLFDEMKENGLQPT---AKIYTTLVSIYFKL-----GEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRA-GRV 317 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~ 317 (638)
...|...+++.++. .|+ ...|..|...|.+. |+.++|.+.|++.++.++.-+..++....+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 35677777777774 355 55788888888874 88888888888888776543466777777777774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHH
Q 006624 318 EDAYGLFMNMLKEGCK--PDIVLINN 341 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~--p~~~~~~~ 341 (638)
++|.+.+++.+...+. |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 8888888888887655 66544443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0084 Score=59.51 Aligned_cols=87 Identities=5% Similarity=-0.086 Sum_probs=62.9
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCCC----HhhHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHHHHHHH
Q 006624 489 KCGRLSDAVDLFNEMKKL---RCKPD----VYTYNALMSGMVRAGMIDDAYSLLRRMEED-----GC-VPD-INSHNIIL 554 (638)
Q Consensus 489 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~~l~ 554 (638)
..|++++|..++++..+. -+.|+ ..+++.|..+|...|++++|+.++++.++- |. .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356777777777766432 12232 356888888888899999998888887742 21 233 45788889
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 006624 555 NGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 555 ~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999888764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.02 Score=56.82 Aligned_cols=92 Identities=10% Similarity=0.034 Sum_probs=65.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCCC-HHH
Q 006624 519 MSGMVRAGMIDDAYSLLRRMEED---GCVPD----INSHNIILNGLAKSGGPKRAMEIFTKMQH-----SE-IKPD-AVS 584 (638)
Q Consensus 519 ~~~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~~ 584 (638)
+..+...|++++|+.++++.++. -+.|+ ..+++.++..|...|++++|..++++... .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888888888877753 12232 45677888888888888888888887764 12 2233 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 585 YNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888889999999999888887653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.012 Score=44.34 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=40.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTAN-TYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
....+.+.|++++|+..|+++.+..+. +.. .+..+..+|...|++++|++.|++..+..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344566667777777777777665332 455 677777777777777777777777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.25 Score=45.04 Aligned_cols=94 Identities=16% Similarity=0.068 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-CCH
Q 006624 528 IDDAYSLLRRMEEDGCVPD---INSHNIILNGLAKS-----GGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRA-GMF 598 (638)
Q Consensus 528 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~ 598 (638)
..+|..++++.++. .|+ ...|..++..|.+. |+.++|.++|++.++.+..-+..++..+.+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 46777788888874 566 55788888888884 89999999999988743211366677777878774 889
Q ss_pred HHHHHHHHHHHhCCCC--CCHhhHHHH
Q 006624 599 EEAARLMKDMNAKGFE--YDQITYSSI 623 (638)
Q Consensus 599 ~~A~~~~~~m~~~~~~--p~~~~~~~l 623 (638)
++|.+.+++.+..+.. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999998876655 665554443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0072 Score=60.08 Aligned_cols=90 Identities=11% Similarity=-0.031 Sum_probs=64.2
Q ss_pred HHhCCCHHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHhcCCHhHHHHHHHHHHh-----CCCCCCCH-HHHHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRK---CKP----TANTYNSMILMLMQEGYYEKIHELYNEMCN-----EGNCFPDT-VTYSA 236 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~-~~~~~ 236 (638)
+.++|++++|+.++++..+.. ..| ...+++.+..+|...|++++|+.++++++. .|+..|++ .+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 346678888888888776431 111 245678888888888888888888887653 24444554 46788
Q ss_pred HHHHHHccCChHHHHHHHHHHHH
Q 006624 237 LISAFGKLGRDISAIRLFDEMKE 259 (638)
Q Consensus 237 l~~~~~~~g~~~~A~~~~~~m~~ 259 (638)
|...|...|++++|+.++++..+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888888888888887764
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0074 Score=45.63 Aligned_cols=58 Identities=21% Similarity=0.212 Sum_probs=41.1
Q ss_pred HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 201 MILMLMQEGYYEKIHELYNEMCNEGNCFPDTV-TYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 201 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
....+.+.|++++|++.|+++.+..+ .+.. .+..+...+...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP--VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS--STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44556677777777777777777654 4555 6777777777777777777777777765
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.48 E-value=0.22 Score=39.01 Aligned_cols=67 Identities=22% Similarity=0.154 Sum_probs=44.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
+....+..++.+...|+-++-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++++.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344455566667777777777777777543 3456677777777777777777777777777777764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.07 Score=58.40 Aligned_cols=27 Identities=7% Similarity=-0.020 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 477 ARVYAVMIKHFGKCGRLSDAVDLFNEM 503 (638)
Q Consensus 477 ~~~~~~li~~~~~~g~~~~A~~~~~~m 503 (638)
...|..+...+.+.++++.|.+.|.++
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344455555555555555555554444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.13 Score=56.16 Aligned_cols=154 Identities=17% Similarity=0.190 Sum_probs=94.7
Q ss_pred HHHHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 133 RCLDETRMIGVMWK-SIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 133 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
......+++++|.+ ++.. -++......++..+.+.|..++|.++.+ +.. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~------i~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN------VEGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG------CCCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhc------CCchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCCH
Confidence 34456788888766 4421 1112334777788888888888887642 111 113345667888
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.
T Consensus 669 ~~A~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 669 TLARDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 8888875433 5677888888888888998888888887643 33455555556666665555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMN 326 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 326 (638)
....|- ++.....|.+.|++++|++++.+
T Consensus 733 a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 733 AETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 444431 22233345555666666555544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.20 E-value=0.046 Score=41.76 Aligned_cols=67 Identities=9% Similarity=-0.033 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 159 GPSVLSEIVNILGKAKMVNKALSIFYQIKSRK------CKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
+...+..+...+.+.|+++.|...|++..+.. ..+....+..+..++.+.|++++|+..++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 33444455555555555555555555544320 11234455555555555666666666655555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.031 Score=45.49 Aligned_cols=84 Identities=12% Similarity=0.027 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
..+.+.|.+....+ +++..+...+..++.+.+ ++++++.+|+++.+.+ +..+...+..+..++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34455555555544 467777777777777777 5567888888777653 111355666677777888888888888
Q ss_pred HHHHHhCCC
Q 006624 218 YNEMCNEGN 226 (638)
Q Consensus 218 ~~~~~~~~~ 226 (638)
++.+++..|
T Consensus 94 ~~~lL~ieP 102 (152)
T 1pc2_A 94 VRGLLQTEP 102 (152)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCC
Confidence 888887664
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.068 Score=43.51 Aligned_cols=90 Identities=20% Similarity=0.104 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHH
Q 006624 282 VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAG---RVEDAYGLFMNMLKEGCKP--DIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
...+.+-|.+..+.|. ++..+...+.-++++.+ ++++++.+|++..+.. .| ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 3455555665555554 46666666777777766 5667777777777764 12 3445555666777888888888
Q ss_pred HHHHHHHHCCCCCCHhHHH
Q 006624 357 KLFNKMEALQCKPNVVTYN 375 (638)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~ 375 (638)
+.++.+.+. .|+..-..
T Consensus 92 ~y~~~lL~i--eP~n~QA~ 108 (152)
T 1pc2_A 92 KYVRGLLQT--EPQNNQAK 108 (152)
T ss_dssp HHHHHHHHH--CTTCHHHH
T ss_pred HHHHHHHhc--CCCCHHHH
Confidence 888887763 35544333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.069 Score=39.68 Aligned_cols=64 Identities=9% Similarity=-0.096 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 546 DINSHNIILNGLAKSGG---PKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 546 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
|...+..+..++...++ .++|..++++..+... -++.....+...+.+.|++++|+..|+++.+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34444444444433322 3455555555544221 1334444444555555555555555555553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.58 Score=39.13 Aligned_cols=98 Identities=7% Similarity=0.064 Sum_probs=47.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006624 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
..+.|+++.|.++.+++ .+...|..|.+.....|+++-|.+.|..... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655544 2445566666666666666655555555433 23333344444544444
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHH
Q 006624 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLL 535 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 535 (638)
..+-+.....| -++.-...+...|+++++.++|
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 43333333222 1233333444455555555554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.47 Score=39.67 Aligned_cols=100 Identities=10% Similarity=0.105 Sum_probs=51.5
Q ss_pred HHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHH
Q 006624 170 LGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDIS 249 (638)
Q Consensus 170 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 249 (638)
..+.|+++.|.++.+++ .+...|..|.+...+.|+++-|.+.|.+... +..+.-.|.-.|+.+.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCHHH
Confidence 34556666666665544 1455666666666666666666666665422 3333334444555555
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 250 AIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 250 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
-.++-+....+| + ++.....+.-.|+++++.++|.+
T Consensus 79 L~kla~iA~~~g---~---~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 79 LSKMQNIAQTRE---D---FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTT---C---HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCc---c---HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444444433 1 12233344455666666666543
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.57 E-value=0.15 Score=38.83 Aligned_cols=68 Identities=15% Similarity=0.015 Sum_probs=49.7
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN-----CFPDTVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
.+...+..++..+.+.|+++.|...|+.+.+... ..+....+..+..++.+.|+++.|+..++++.+.
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3667778888888999999999999888776421 1134566777777777777777777777777764
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.83 E-value=0.46 Score=38.17 Aligned_cols=103 Identities=17% Similarity=0.212 Sum_probs=63.4
Q ss_pred CHHHHHHHHHHHHhcCCH------hHHHHHHHHHHhCCCCCCCHH-HHHHHHH------HHHccCChHHHHHHHHHHHHC
Q 006624 194 TANTYNSMILMLMQEGYY------EKIHELYNEMCNEGNCFPDTV-TYSALIS------AFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~m~~~ 260 (638)
|.++|-..+..+-+.|+. ++.+++|++....-+ |+.. .|...+. .+...++.++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P--p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP--PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC--GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC--ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666676666666666776 777777777776543 4321 1111111 112236777788888777654
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006624 261 GLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCAL 299 (638)
Q Consensus 261 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 299 (638)
+-.. ...|......-.+.|++.+|.+++...+..++.|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3222 6666666676777788888888887777776653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.71 E-value=0.42 Score=38.38 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHHhCCCCCCHH-HHHHHHHH------HHhCCCHHHHHHHHHHHhh
Q 006624 122 EHNSTTYMALIRCLDETRMI------GVMWKSIQDMVRSTCVMGPS-VLSEIVNI------LGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~~------~~~~g~~~~A~~~~~~~~~ 188 (638)
+.|..+|-..+..+-+.|++ ++..++|++.... .+|+.. .+...+.. +...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888888888 7888888887764 344321 11111111 1223566666666666644
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 189 RKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 189 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
. ++-=...|.....--.++|++.+|.+++...+..++
T Consensus 89 ~-hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 89 N-CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp H-CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred H-hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3 121255555555555566666666666666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.68 E-value=6e-06 Score=79.62 Aligned_cols=204 Identities=12% Similarity=0.089 Sum_probs=112.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
.+.+|..+.++..+.++..+|++.|- ..-|+..|..++....+.|++++-...+.-..+..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 34567777777777777766665443 234556677777777777777777766655544422 3333446777
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC--------------------CC
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG--------------------LQ 263 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g--------------------~~ 263 (638)
+|++.++..+-.+. +. .||......+.+-|...|.++.|.-+|..+.... -.
T Consensus 125 ayAk~~rL~elEef----l~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKA 196 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----IN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKA 196 (624)
T ss_dssp HHHTSCSSSTTTST----TS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTC
T ss_pred HHHhhCcHHHHHHH----Hc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777765543222 11 1566566666666666666666665554332110 01
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
-++.||..+-.+|...+.+.-|.-.--.++-.. .-...++..|-..|.+++-+.+++.-... -......|+.|.
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELa 270 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELA 270 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHH
Confidence 245566666666666666555544433333211 11223445566666666666666665532 223555666666
Q ss_pred HHHHcc
Q 006624 344 NVLGRA 349 (638)
Q Consensus 344 ~~~~~~ 349 (638)
-.|++-
T Consensus 271 ILYsKY 276 (624)
T 3lvg_A 271 ILYSKF 276 (624)
T ss_dssp HHHHSS
T ss_pred HHHHhc
Confidence 666654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.59 E-value=0.3 Score=38.18 Aligned_cols=84 Identities=10% Similarity=0.010 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHhhCC-CCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 142 GVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNK---ALSIFYQIKSRK-CKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
..+.+.|.+....| .++..+-..+..++.+..+... ++.+++.+.+.+ +.........+.-++.+.|++++|.+.
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 34444444444433 3666666666666666665544 677777766653 111334445566677777777777777
Q ss_pred HHHHHhCCC
Q 006624 218 YNEMCNEGN 226 (638)
Q Consensus 218 ~~~~~~~~~ 226 (638)
++.+++..|
T Consensus 97 ~~~lL~~eP 105 (126)
T 1nzn_A 97 VRGLLQTEP 105 (126)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHHhCC
Confidence 777777654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.46 Score=37.10 Aligned_cols=83 Identities=23% Similarity=0.124 Sum_probs=50.2
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHH
Q 006624 281 EVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED---AYGLFMNMLKEGCK-PDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 281 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
....+.+-|......|. ++..+-..+.-++.+.....+ ++.+++++.+.+.+ -.....-.|.-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555544444 466666666666776665554 77777777665311 12334445666777888888888
Q ss_pred HHHHHHHH
Q 006624 357 KLFNKMEA 364 (638)
Q Consensus 357 ~~~~~~~~ 364 (638)
+.++.+.+
T Consensus 95 ~~~~~lL~ 102 (126)
T 1nzn_A 95 KYVRGLLQ 102 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.43 E-value=2.3 Score=33.44 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 267 KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 267 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
......++.+...|+-++-.+++..+.. +..|++.....+..+|.+.|+..+|.+++.+..+.|.
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3334444444455555555555544322 2233444444555555555555555555555554443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.33 E-value=11 Score=40.91 Aligned_cols=277 Identities=13% Similarity=0.039 Sum_probs=148.6
Q ss_pred HHHccCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHH-HHhCC-CC-----CCHHHHHHHHH
Q 006624 345 VLGRAGRLEDALKLFNKMEALQCKPNV--VTYNTVIKSLFESKAPASEASAWFEK-MKANG-VL-----PSPFTYSILID 415 (638)
Q Consensus 345 ~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-~~-----~~~~~~~~l~~ 415 (638)
+....|+.++++.+++.....+...+. ..-..+--++...|...++ ..++.. +.... +. +....-.++.-
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~-~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDT-TDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHH-HHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHH-HHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 455667777787777765442101122 2222233344555555444 444443 33221 00 11222233333
Q ss_pred HHHhcCC-HHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006624 416 GFCKTNR-VEKAHLLLEEMEEKGFPPCP--AAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGR 492 (638)
Q Consensus 416 ~~~~~~~-~~~A~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 492 (638)
++.-.|. -+++.+.+..+.... .+.. .+-.++...+.-.|+-+....++..+.+. ...+..-...+.-++...|+
T Consensus 462 Gla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 462 GLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTC
T ss_pred HHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCC
Confidence 3433342 245666676666543 1111 12223444566778888888888877763 22222223334444557889
Q ss_pred HHHHHHHHHHHHhCCCCCCHhhHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 493 LSDAVDLFNEMKKLRCKPDVYTYN---ALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEI 569 (638)
Q Consensus 493 ~~~A~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 569 (638)
.+.+..+.+.+.... .| ..-|. ++.-+|+-.|+.....++++.+.+.. ..+......+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 998888888887641 12 22333 33445667888777777999888752 22333333444455567887777888
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHhhHHHHHHHHhccC
Q 006624 570 FTKMQHSEIKPDAVSYNTILGCLSRAGMF-EEAARLMKDMNAKGFEYDQITYSSILEAVGKVD 631 (638)
Q Consensus 570 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 631 (638)
++.+.+.+ .|....-..+.-+....|+. .+|...+..+.. .+|..+-..-+-+++..|
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 87776643 34444333444445555554 678888888863 455555555555554444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=93.11 E-value=1.3 Score=32.62 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
|.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 44467777777777788899999999999999999999999999988765 344455688777654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=92.69 E-value=6.5 Score=36.74 Aligned_cols=166 Identities=13% Similarity=0.103 Sum_probs=90.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLV----QEMKGKGCALTVYTYTELIK 309 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~~~~~li~ 309 (638)
|.++..-|.+.+++++|++++-.-.. .+.+.|+...|-++. +-..+.+.++|......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44455556677777777776543322 244455554444333 33444566666666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 006624 310 GLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLF 382 (638)
Q Consensus 310 ~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 382 (638)
.+.....-+ +=..+.+++++ .| ..-|......+...|.+.+++.+|...|- .|..+....+..++-.+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHH
Confidence 655444311 11223333332 12 33467777888899999999999887773 133333456655554444
Q ss_pred hcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 383 ESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 383 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 434 (638)
..+...+. +.+.-. .+-.|...++...|..+++...
T Consensus 179 ~~~~~~e~---------------dlfiaR-aVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHTA---------------PLYCAR-AVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGGH---------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCccH---------------HHHHHH-HHHHHHHhCCHHHHHHHHHHHH
Confidence 44432222 222222 2334666778888877766554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.13 E-value=10 Score=37.60 Aligned_cols=41 Identities=10% Similarity=0.020 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHC-----CCCCCHhHHHHHHHHHHhcCChHHH
Q 006624 350 GRLEDALKLFNKMEAL-----QCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 350 g~~~~A~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a 390 (638)
|+++.|.+.+-.+.+. +..........++..+...++....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l 75 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDL 75 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHH
Confidence 4566666655544331 1222344455555555555554443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.47 E-value=5.1 Score=45.40 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006624 232 VTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTEL 307 (638)
Q Consensus 232 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 307 (638)
.-|..++..+-+.|.++.+.++-...++...+.+. ..|..+...+...|++++|...+-.+..... -......|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 34555556666666666666655555443211111 1355556666666666666666655554432 33445555
Q ss_pred HHHHHhcCCH------------HHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHH
Q 006624 308 IKGLGRAGRV------------EDAYGLFMNMLKE--GCKPDIVLINNLINVLGRAGRLEDA-LKLFNKMEA 364 (638)
Q Consensus 308 i~~~~~~g~~------------~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 364 (638)
+..+|..|.. ++..+++..-.+. .+...+.-|..|=..+...|++..| .-+|+.+.+
T Consensus 978 V~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 978 VNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 5555544443 3344444332221 1111123345555555666666544 445555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.36 E-value=12 Score=37.00 Aligned_cols=171 Identities=12% Similarity=0.081 Sum_probs=79.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH----ccCCHHHHH--HHHHHHHH---cCCC
Q 006624 404 LPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYG----KAKRYEAAN--ELFLELKE---YCGC 474 (638)
Q Consensus 404 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~--~~~~~~~~---~~~~ 474 (638)
.........++..|...|+++...+.+.-+.... .-...+...+++.+. .....+... .+.+.... ..+.
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr-~qlk~ai~~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kif 131 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKH-GQLKLSIQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIF 131 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTT-TTSHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchH
Confidence 3345556667777777777777766665554432 112223333333222 112111111 11111000 0011
Q ss_pred C---cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CC
Q 006624 475 S---SARVYAVMIKHFGKCGRLSDAVDLFNEMKKL--RCKPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEE----DG 542 (638)
Q Consensus 475 ~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~ 542 (638)
. .......|...|...|++.+|..++..+... +.... ...+...+..|...+++.+|..++.++.. ..
T Consensus 132 lE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~ 211 (445)
T 4b4t_P 132 VEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP 211 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC
Confidence 1 1223345566666666666666666665432 11111 22344455566666666666666665532 11
Q ss_pred CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006624 543 CVPD--INSHNIILNGLAKSGGPKRAMEIFTKMQH 575 (638)
Q Consensus 543 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 575 (638)
..|+ ...+...+..+...+++.+|.+.|.++..
T Consensus 212 ~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 212 KYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 1222 22344555555666666666666655544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.12 E-value=0.9 Score=37.28 Aligned_cols=26 Identities=12% Similarity=0.018 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMC 222 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 222 (638)
++..+.+++...|+|.+|...|++.+
T Consensus 65 ~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 65 LLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34445566666666666666666653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.06 E-value=2.4 Score=33.05 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
|.=+..+-++.+....+.|++.+..+.+++|.+.+|+.-|.++++-.+.+ +.+...+|..+++-+
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqEl 132 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 132 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHHH
Confidence 33466777777777888999999999999999999999999999998865 355566788887754
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.06 E-value=8.2 Score=43.70 Aligned_cols=168 Identities=15% Similarity=0.082 Sum_probs=102.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
++..+.+.+.++-|.++..... .++..--.+..++...|++++|.+.|++.... .. .+... ..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~-~~~~l----------~~ 880 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LY-SHTSQ----------FA 880 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CT-TCCCS----------CS
T ss_pred HHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hc-ccchh----------hh
Confidence 4445555666666555443322 24444455667777788888888888765321 10 11000 00
Q ss_pred ChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHH
Q 006624 246 RDISAIRLFDEMKENG--LQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV----YTYTELIKGLGRAGRVED 319 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~ 319 (638)
... -+..+.... ...-..-|..++..+.+.+.++.+.++-+...+....-+. ..|..+.+.+...|++++
T Consensus 881 ~~~----~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~ 956 (1139)
T 4fhn_B 881 VLR----EFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA 956 (1139)
T ss_dssp SHH----HHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG
T ss_pred hhc----ccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH
Confidence 000 011122211 1123445778888999999999999888777654322222 257888999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006624 320 AYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 320 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
|...+-.+..... -......|+...|..|..+.-.
T Consensus 957 Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 957 AHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp GGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhh
Confidence 9999988776543 3567778888888887765543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.57 E-value=1.9 Score=41.99 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=53.7
Q ss_pred HHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006624 198 YNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 198 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
...++..+...|++++|+..+..+....+ -+...|..+|.++.+.|+..+|++.|+...+ .|+.|...+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P--~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566777888888888888888887765 5777888888888888888888888887653 477777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.04 E-value=3.3 Score=32.50 Aligned_cols=69 Identities=10% Similarity=-0.002 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 157 VMGPSVLSEIVNILGKAKMV---NKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.|++.+-..+.-++.+..+. .+++.+++.+.+.+.......+-.+.-++.+.|++++|.+..+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45555555555555555432 3456666666554332234445556666666777777777666666654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.97 E-value=24 Score=38.21 Aligned_cols=27 Identities=15% Similarity=0.196 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhh
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKS 188 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 188 (638)
-|..+++++.+.++.+.+.++|.++..
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 355666777778888888888888764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.81 E-value=5.4 Score=42.20 Aligned_cols=53 Identities=13% Similarity=0.063 Sum_probs=38.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006624 520 SGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKM 573 (638)
Q Consensus 520 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 573 (638)
..|...|+++-|+++-++.+..- +-+..+|..|..+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34556788888888888877742 224778888888888888888888777776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.74 E-value=1.7 Score=45.93 Aligned_cols=86 Identities=15% Similarity=0.020 Sum_probs=57.0
Q ss_pred CCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHhhhC---
Q 006624 509 KPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSG---------GPKRAMEIFTKMQHS--- 576 (638)
Q Consensus 509 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~~~--- 576 (638)
+.+..=|..|.....+.+.+++|.+.|+..+.. +-+...+..|+..|.+.+ +.+..+...-++..-
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~R 687 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCR 687 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhh
Confidence 344556888888888888888888888888875 457788888888888776 666666666665531
Q ss_pred -CCCCCHHHHHHHHHHHHhcC
Q 006624 577 -EIKPDAVSYNTILGCLSRAG 596 (638)
Q Consensus 577 -~~~p~~~~~~~l~~~~~~~g 596 (638)
-...+......+...+.+.|
T Consensus 688 wY~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 688 YYNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TTBCCCHHHHHHHHHHHHHHC
T ss_pred cccccCHHHHHHHHHHHHHhC
Confidence 11223444445555454444
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.09 E-value=7.4 Score=30.98 Aligned_cols=69 Identities=9% Similarity=-0.027 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 157 VMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+++.+-..+..++.+..+ ..+++.+++.+...+..........+.-++.+.|++++|.+..+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3455555555555555443 23455555555554332233444455566666666666666666666654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=88.40 E-value=16 Score=33.90 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=87.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHH
Q 006624 234 YSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGL----VQEMKGKGCALTVYTYTELIK 309 (638)
Q Consensus 234 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~~~~~~~~~li~ 309 (638)
|.++..-|.+.+++++|++++..-.. .+.+.|+...|-++ ++...+.+.+++......++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 44445556666777777776644322 23445555444443 344445566666666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 006624 310 GLGRAGRVE-DAYGLFMNMLK----EG--CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLF 382 (638)
Q Consensus 310 ~~~~~g~~~-~A~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~ 382 (638)
.+.....-+ +=.++.+++++ .| ..-|+.....+...|.+.|++.+|...|-. +..-+...+..++-.+.
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~ 176 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWL 176 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHH
Confidence 554432111 12334444433 11 224777888888899999999988877642 11113444544444443
Q ss_pred hc---CChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 383 ES---KAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEME 434 (638)
Q Consensus 383 ~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 434 (638)
.. +...+. +.+.-. .+-.|.-.++...|..+++...
T Consensus 177 ~~~~~~~~~e~---------------dlf~~R-aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 177 CQVDDIEDSTV---------------AEFFSR-LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHTTCCCHHHH---------------HHHHHH-HHHHHHHTTBHHHHHHHHHHHH
T ss_pred HhcCCCCcchH---------------HHHHHH-HHHHHHHhcCHHHHHHHHHHHH
Confidence 33 222221 111112 2233556778888888777654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=88.37 E-value=19 Score=34.76 Aligned_cols=118 Identities=9% Similarity=0.031 Sum_probs=75.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHH
Q 006624 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMG-----PSVLSEIVNILGKAKMVNKA 179 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A 179 (638)
.+..+..++|+...+..-.....=.-++..|...|++.+|.+++..+.+.-...| ..++..-+..|...+++.++
T Consensus 79 ~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 79 VQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHH
Confidence 3566788899976542111111223678899999999999999988877521211 34566677788888999998
Q ss_pred HHHHHHHhhC--CCCCCHHHH----HHHHHHHH-hcCCHhHHHHHHHHHH
Q 006624 180 LSIFYQIKSR--KCKPTANTY----NSMILMLM-QEGYYEKIHELYNEMC 222 (638)
Q Consensus 180 ~~~~~~~~~~--~~~~~~~~~----~~l~~~~~-~~g~~~~A~~~~~~~~ 222 (638)
...+...... .+.+++... -.-+..++ ..++|..|...|-+..
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 8888776543 111233222 22234455 6788888888777664
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.20 E-value=2.4 Score=31.24 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=46.8
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 140 MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+.-+..+-++.+...+..|++.+..+.++++.+-+++..|.++|+-++.+ +.+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34466777777778888899999999999999999999999998888765 2223445665553
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=88.10 E-value=4.6e-05 Score=73.66 Aligned_cols=263 Identities=13% Similarity=0.099 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIY 276 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 276 (638)
.|..+..+..+.++..+|++-|-+. .|...|..++.+..+.|.+++-.+++....+. ..++.+=+.|+-+|
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 3444555555555544444433221 33334455555555555555555554433332 12333334555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006624 277 FKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDAL 356 (638)
Q Consensus 277 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 356 (638)
++.+++.+-.+++. .|+..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHH
Confidence 55555443222221 1333333444444555555555544443221 1222333344444444443
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 357 KLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 357 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 436 (638)
+.-++. -++.||..+-.+|...+...-+-.--+.-+... | ....++..|-..|.+++-+.+++.-...
T Consensus 191 daArKA------ns~ktWKeV~~ACvd~~EfrLAqicGLniIvha----d--eL~elv~~YE~~G~f~ELIsLlEaglgl 258 (624)
T 3lvg_A 191 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA----D--ELEELINYYQDRGYFEELITMLEAALGL 258 (624)
T ss_dssp TTTTTC------CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS----S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS
T ss_pred HHHHhc------CChhHHHHHHHHHhCchHHHHHHHhcchhcccH----H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC
Confidence 322221 244455555555554444332211111111111 1 1122445566677777777777766643
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCC------CcHHHHHHHHHHHHhcCCHHHHHH
Q 006624 437 GFPPCPAAYCSLINGYGKAKRYEAANELFLELKEY-CGC------SSARVYAVMIKHFGKCGRLSDAVD 498 (638)
Q Consensus 437 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~------~~~~~~~~li~~~~~~g~~~~A~~ 498 (638)
. ......++-|.-.|++-. .++..+.++..-.+ +++ .....|..++-.|++-.+++.|..
T Consensus 259 E-rAHmGmFTELaILYsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 259 E-RAHMGMFTELAILYSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp T-TCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred C-chhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 3 455666777766666652 23322222221111 111 123446677777777777766543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.98 E-value=3.6 Score=40.01 Aligned_cols=55 Identities=4% Similarity=-0.029 Sum_probs=26.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHH
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEM 221 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 221 (638)
++..+...|++++|...+..+.... +.+...|..++.+|.+.|+..+|++.|+..
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444445555555555554444332 124445555555555555555555555543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=87.54 E-value=7.4 Score=30.53 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 545 PDINSHNIILNGLAKSGGP---KRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMN 609 (638)
Q Consensus 545 p~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 609 (638)
|+..+--.+.+++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444444444455544432 3445555554443210112333344445555555555555555555
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=84.40 E-value=8.3 Score=28.27 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|+|++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALC--EYRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHH--HHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45566666555555432 22222223345667777777777666543 57777776653 356677777777666
Q ss_pred HHHhCC
Q 006624 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 665554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=83.63 E-value=28 Score=32.25 Aligned_cols=82 Identities=11% Similarity=-0.102 Sum_probs=48.2
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCHhhHH
Q 006624 440 PCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKC---GRLSDAVDLFNEMKKLRCKPDVYTYN 516 (638)
Q Consensus 440 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~ 516 (638)
-++.....+...|.+.|++.+|...|-.- ...+...+..++.-+... |...++--+ .-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~----~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf--------------~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLG----THDSMIKYVDLLWDWLCQVDDIEDSTVAEF--------------FSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTS----CHHHHHHHHHHHHHHHHHTTCCCHHHHHHH--------------HHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhC----CCccHHHHHHHHHHHHHhcCCCCcchHHHH--------------HHH
Confidence 47788888899999999999988776521 111344444444433333 333332211 112
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 006624 517 ALMSGMVRAGMIDDAYSLLRRMEE 540 (638)
Q Consensus 517 ~l~~~~~~~g~~~~A~~~~~~~~~ 540 (638)
++ -.|...|+...|..+++...+
T Consensus 194 aV-L~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 194 LV-FNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HH-HHHHHTTBHHHHHHHHHHHHH
T ss_pred HH-HHHHHhcCHHHHHHHHHHHHH
Confidence 22 235567888888888887653
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.47 E-value=4.8 Score=31.47 Aligned_cols=60 Identities=17% Similarity=0.281 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 143 VMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 143 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+..+-++.+...+..|++.+..+.++++-+-+++..|.++|+-++.+ +.+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 56667777777888899999999999999999999999999888765 2334445666553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.16 E-value=8.3 Score=31.63 Aligned_cols=133 Identities=14% Similarity=0.045 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHhhC--CCCCCH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRST-CVMG-------PSVLSEIVNILGKAKMVNKALSIFYQIKSR--KCKPTA 195 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~ 195 (638)
.++-.-++.+...|.|+.|+-+..-++... ..++ ..++..+.+++...|++.+|...|++..+. ...-+.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788889999999988887755431 1222 136677888999999999999999986432 111011
Q ss_pred HHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006624 196 NTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVS 274 (638)
Q Consensus 196 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 274 (638)
.++.++. . ...... .... ..+...--.+...+.+.|+.++|+.+++.+..+. .+..+-..|..
T Consensus 101 s~~~~~~---~-~ss~p~---------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~Lak 163 (167)
T 3ffl_A 101 KVRPSTG---N-SASTPQ---------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLAN 163 (167)
T ss_dssp -----------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHH
T ss_pred Ccccccc---c-cCCCcc---------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHH
Confidence 1111110 0 000000 0011 1344555557777788888888888887765442 24444334433
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.41 E-value=8 Score=28.30 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006624 527 MIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMK 606 (638)
Q Consensus 527 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (638)
..++|..+-+-+...+. ....-.+-+..+...|+|++|..+.+.+- .||...|.++. -.+.|..+++...+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALc--e~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALC--EWHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHH--HHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHH--HHhcccHHHHHHHHH
Confidence 45666666655555432 22222223345667777777777665543 57777776653 457777777777776
Q ss_pred HHHhCC
Q 006624 607 DMNAKG 612 (638)
Q Consensus 607 ~m~~~~ 612 (638)
++...|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 776554
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=80.05 E-value=33 Score=30.75 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=69.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCC--CCCHhHHHHHHHHHHhcCC
Q 006624 309 KGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQC--KPNVVTYNTVIKSLFESKA 386 (638)
Q Consensus 309 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~ 386 (638)
..+.+.|++++|+.....-++..+. |...-..++..+|-.|+++.|.+-++...+... .|....|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------ 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------ 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH------
Confidence 3456778888888888777777544 777777788888888888888887777766431 1222344444443
Q ss_pred hHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 006624 387 PASEASAWFEKMKANGVLP-----SPFTYSILIDGF--CKTNRVEKAHLLLEEMEEK 436 (638)
Q Consensus 387 ~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~ 436 (638)
+..-..+...+-.| ...-...++.+. ...|+.++|..+-.++.+.
T Consensus 78 -----E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -----AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -----HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222233322222 122233444443 3468888888888877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 638 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-08 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.002 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.2 bits (134), Expect = 5e-09
Identities = 43/306 (14%), Positives = 97/306 (31%), Gaps = 12/306 (3%)
Query: 68 RILKIFKWGPDAEKALEVLKMRVDHRLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTT 127
+ K +A + + + + ++N
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIK 187
Y + + +G + ++ +++ ++ L+I + K
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194
Query: 188 SRKCKPT-ANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246
+ P + Y ++ +L + +++ Y + + L + + G
Sbjct: 195 AVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV--HGNLACVYYEQGL 252
Query: 247 DISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYT 305
AI + E LQP Y L + + G V +A C +
Sbjct: 253 IDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLN 309
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLI-NNLINVLGRAGRLEDALKLFNKMEA 364
L G +E+A L+ L+ P+ +NL +VL + G+L++AL + + A
Sbjct: 310 NLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKE--A 365
Query: 365 LQCKPN 370
++ P
Sbjct: 366 IRISPT 371
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.4 bits (124), Expect = 8e-08
Identities = 45/330 (13%), Positives = 95/330 (28%), Gaps = 13/330 (3%)
Query: 306 ELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEAL 365
EL +AG E A M + ++ + ++ L ++ + RL+ + A+
Sbjct: 4 ELAHREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTL--AI 60
Query: 366 QCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEK 425
+ P +L + E + L F + +
Sbjct: 61 KQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 426 AHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIK 485
+ + + P S + KA + + A ++ +
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 486 HFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVP 545
F G + A+ F + L + Y L + + A + D A + R
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N 235
Query: 546 DINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFEEAARL 604
H + + G A++ + + E++P +Y + L G EA
Sbjct: 236 HAVVHGNLACVYYEQGLIDLAIDTYRRA--IELQPHFPDAYCNLANALKEKGSVAEAEDC 293
Query: 605 MKD--MNAKGFEYDQITYSSILEAVGKVDE 632
++I G ++E
Sbjct: 294 YNTALRLCPTHADSLNNLANIKREQGNIEE 323
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.2 bits (121), Expect = 2e-07
Identities = 55/367 (14%), Positives = 115/367 (31%), Gaps = 17/367 (4%)
Query: 243 KLGRDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTV 301
+ G +A R ++ +P + L SI+F+ ++++ A+
Sbjct: 11 QAGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL------AIKQ 62
Query: 302 Y-TYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFN 360
E LG + + + + I+ IN+ D
Sbjct: 63 NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122
Query: 361 KMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420
+ + E + +S L F
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182
Query: 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVY 480
+ A E+ P AY +L N +A+ ++ A +L + A V+
Sbjct: 183 GEIWLAIHHFEKAVTL-DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH 240
Query: 481 AVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEE 540
+ + + G + A+D + +L+ Y L + + G + +A
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR 299
Query: 541 DGCVPDINSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPD-AVSYNTILGCLSRAGMFE 599
C +S N + N + G + A+ ++ K E+ P+ A +++ + L + G +
Sbjct: 300 L-CPTHADSLNNLANIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQ 356
Query: 600 EAARLMK 606
EA K
Sbjct: 357 EALMHYK 363
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.1 bits (88), Expect = 0.002
Identities = 20/137 (14%), Positives = 43/137 (31%), Gaps = 6/137 (4%)
Query: 313 RAGRVEDAYGLFMNMLKEGCKP-DIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371
G+++ A L + +K P D L ++ I +L G E A + + L +
Sbjct: 8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP 65
Query: 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLE 431
++ L ++ + + K G + + + E+ L
Sbjct: 66 GASQ--LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123
Query: 432 EMEEKGFPPCPAAYCSL 448
++EE
Sbjct: 124 QIEEL-RQEKGFLANDT 139
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.6 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.31 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.18 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.98 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.61 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.6 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.59 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.57 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.53 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.51 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.45 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.44 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.37 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.33 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.25 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.99 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.99 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.97 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.96 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.92 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.83 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.83 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.77 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.76 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.73 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.65 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.59 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.55 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.48 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.07 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.34 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.36 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.05 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.34 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 92.57 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.97 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.14 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 85.71 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-21 Score=194.45 Aligned_cols=362 Identities=14% Similarity=0.086 Sum_probs=171.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 132 IRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYY 211 (638)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 211 (638)
...+.+.|++++|.+.++++++.. |-++.++..+..++.+.|++++|+..|+++.+..+. +..+|..++.+|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 344555566666666666655532 334555555555666666666666666655554322 455555555666666666
Q ss_pred hHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006624 212 EKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQE 291 (638)
Q Consensus 212 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 291 (638)
++|++.+.......+ .+..............+....+........... .................+....+...+..
T Consensus 84 ~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccccccccccccccc--ccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 666666665555443 333333334444444444444444443333322 12333333344444445555555555544
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCH
Q 006624 292 MKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNV 371 (638)
Q Consensus 292 m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 371 (638)
.....+. +...+..+...+...|++++|...+++.++..+. +..++..+...+...|++++|...++......
T Consensus 161 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 233 (388)
T d1w3ba_ 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS----- 233 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-----
T ss_pred hhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-----
Confidence 4443322 3444444445555555555555555554443222 33444444444555555554444444332211
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 006624 372 VTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLING 451 (638)
Q Consensus 372 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 451 (638)
+.+...+..+...+.+.|++++|...+++..+.. |.++.++..+...
T Consensus 234 --------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 280 (388)
T d1w3ba_ 234 --------------------------------PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANA 280 (388)
T ss_dssp --------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHH
T ss_pred --------------------------------hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 1123333444455555555555555555555543 3444455555555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHH
Q 006624 452 YGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDA 531 (638)
Q Consensus 452 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 531 (638)
+...|++++|.+.++..... .+.+...+..+...+...|++++|+..|++..+.. +.+..++..+...|.+.|++++|
T Consensus 281 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 281 LKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 55555555555555544443 23334444444444444444444444444444321 11233344444444444444444
Q ss_pred HHHHHHHHH
Q 006624 532 YSLLRRMEE 540 (638)
Q Consensus 532 ~~~~~~~~~ 540 (638)
.+.|+++++
T Consensus 359 ~~~~~~al~ 367 (388)
T d1w3ba_ 359 LMHYKEAIR 367 (388)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.5e-21 Score=193.66 Aligned_cols=379 Identities=15% Similarity=0.085 Sum_probs=168.6
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..+.+.|++++|++.|+++.+..+. +...+..+...|.+.|++++|++.|+++++..+ .+..++..+...+.+.|++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhhhccc
Confidence 3444555555555555555544221 445555555555555555555555555555443 3444555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 248 ISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNM 327 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 327 (638)
++|++.+....+.. +.+..............+....+............. ...............+....+...+...
T Consensus 84 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHh
Confidence 55555555554432 122222333333333333333333333222222211 2222222233333344444444444333
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCH
Q 006624 328 LKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSP 407 (638)
Q Consensus 328 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 407 (638)
....+. +...+..+...+...|++++|...++...+.. +-+.
T Consensus 162 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------------------------------------p~~~ 203 (388)
T d1w3ba_ 162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-------------------------------------PNFL 203 (388)
T ss_dssp HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-------------------------------------TTCH
T ss_pred hccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-------------------------------------cccH
Confidence 333211 23333333344444444444444333332210 1122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006624 408 FTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHF 487 (638)
Q Consensus 408 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 487 (638)
..+..+...+...|++++|...+++....+ +.+...+..+...+.+.|++++|...|+++.+. .+.+
T Consensus 204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~----------- 270 (388)
T d1w3ba_ 204 DAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-QPHF----------- 270 (388)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CSSC-----------
T ss_pred HHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCC-----------
Confidence 333444444555555555555555544433 334444444444444444444444444444443 2223
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 488 GKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 488 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
..++..+...+...|++++|.+.++...... +.+...+..+...+.+.|++++|+
T Consensus 271 ------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 271 ------------------------PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp ------------------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHH
Confidence 3444445555555555555555555544432 234445555555555555555555
Q ss_pred HHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HhhHHHHHHHHhccC
Q 006624 568 EIFTKMQHSEIKP-DAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYD-QITYSSILEAVGKVD 631 (638)
Q Consensus 568 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 631 (638)
+.|++..+. .| +..+|..+..+|.+.|++++|.+.|++..+ +.|+ ...|..+...+.+.|
T Consensus 326 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 326 RLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 555555432 22 234455555555555555555555555553 2332 334555555554444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8.8e-13 Score=126.14 Aligned_cols=145 Identities=12% Similarity=0.055 Sum_probs=76.2
Q ss_pred CCHHHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 421 NRVEKAHLLLEEMEEKG-FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDL 499 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 499 (638)
+.+.+|...+.+..+.. ...+..++..+...+...|++++|...+++.... .+.+...|..+...|...|++++|...
T Consensus 150 ~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 150 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RPNDYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc-ccccccchhhhhhcccccccchhHHHH
Confidence 34445555555444322 1233445555555555666666666666655554 233455555566666666666666666
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC----------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006624 500 FNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED----------GCVPDINSHNIILNGLAKSGGPKRAM 567 (638)
Q Consensus 500 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~p~~~~~~~l~~~~~~~g~~~~A~ 567 (638)
|++..+.. +-+...|..+..+|.+.|++++|++.|++.++. ........|..+-.++...|+.+.+.
T Consensus 229 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 229 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 66555432 123445555666666666666666666655541 11223445555666666666655443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.9e-13 Score=126.89 Aligned_cols=222 Identities=11% Similarity=0.051 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006624 103 VEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSI 182 (638)
Q Consensus 103 ~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 182 (638)
++.+.|+..|+.+.+.. |.+..+|..+..++...|++++|...+++.++.. +-+...+..++..|...|++++|.+.
T Consensus 33 g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~ 109 (323)
T d1fcha_ 33 GDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEI 109 (323)
T ss_dssp TCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccccc
Confidence 44455555555444333 3344455555555555555555555555544432 23344444455555555555555555
Q ss_pred HHHHhhCCCCC--------------CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006624 183 FYQIKSRKCKP--------------TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 183 ~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
+++........ +.......+..+...+.+.+|.+.|.+.....+...+...+..+...+...|+++
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~ 189 (323)
T d1fcha_ 110 LRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYD 189 (323)
T ss_dssp HHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHH
T ss_pred hhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHh
Confidence 55444331110 0000001111222233344444444444443332233344444444444444444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006624 249 SAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNML 328 (638)
Q Consensus 249 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 328 (638)
+|+..+++..... +-+..+|..+...|.+.|++++|.+.+++..+..+. +..+|..+..+|.+.|++++|+..|++.+
T Consensus 190 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 267 (323)
T d1fcha_ 190 KAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEAL 267 (323)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444331 123344444444444444444444444444443222 33444444444444444444444444444
Q ss_pred H
Q 006624 329 K 329 (638)
Q Consensus 329 ~ 329 (638)
+
T Consensus 268 ~ 268 (323)
T d1fcha_ 268 N 268 (323)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=7.4e-10 Score=104.30 Aligned_cols=217 Identities=10% Similarity=0.045 Sum_probs=174.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK-MVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
..+|+.+..++.+.+.+++|+.+++.++... |-+..+|+....++...| ++++|+..+++..+..+. +..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence 4577778888899999999999999999864 667778888888888876 589999999999887654 8899999999
Q ss_pred HHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC--
Q 006624 204 MLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE-- 281 (638)
Q Consensus 204 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-- 281 (638)
.+.+.|++++|++.++++.+..+ .+...|..+...+.+.|++++|++.++++++.. +.+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp--~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDA--KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhhhhhh--cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccc
Confidence 99999999999999999999876 688999999999999999999999999999874 3467788888877776665
Q ss_pred ----HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 006624 282 ----VEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKP-DIVLINNLINVLGR 348 (638)
Q Consensus 282 ----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 348 (638)
+++|++.+.+..+..+. +...|..+...+.. ...+++...++...+....+ +...+..++..|..
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 67899999988887655 77777777665544 44677888888777654332 45556666666643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=1.6e-09 Score=101.90 Aligned_cols=197 Identities=9% Similarity=0.074 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-HhHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGY-YEKIHELYNEMCNEGNCFPDTVTYSALIS 239 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 239 (638)
.+++.+...+.+.+.+++|+..++++.+..+. +..+|+....++...|+ +++|++.++..++..+ -+..+|..+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p--~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--hhhhHHHHHhH
Confidence 45666667777888888888888888887544 77778888888777664 7888888888887765 57778888888
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 006624 240 AFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR--- 316 (638)
Q Consensus 240 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~--- 316 (638)
.+.+.|++++|++.++++.+.. +.+..+|..+...+.+.|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence 8888888888888888888763 346778888888888888888888888888887655 67777766666555554
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 317 ---VEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 317 ---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
+++|+..+...++..+. +...|+.+...+...| .+++.+.++...+
T Consensus 199 ~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 56777777777776443 6666666655544433 4666666666554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=1.7e-08 Score=96.96 Aligned_cols=305 Identities=12% Similarity=0.043 Sum_probs=195.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 006624 270 TTLVSIYFKLGEVEKALGLVQEMKGKGCALT----VYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD----IVLIN 340 (638)
Q Consensus 270 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~ 340 (638)
......+...|++++|++++++..+..+..+ ...+..+...+...|++++|...|++..+.... ++ ...+.
T Consensus 16 ~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 16 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 3345566677777777777777766543322 235666677777888888888888777653111 11 23455
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (638)
.+...+...|++..+...+....... ..............+..+...+...
T Consensus 96 ~~~~~~~~~~~~~~a~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~~~la~~~~~~ 146 (366)
T d1hz4a_ 96 QQSEILFAQGFLQTAWETQEKAFQLI-----------------------------NEQHLEQLPMHEFLVRIRAQLLWAW 146 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------HhcccchhhHHHHHHHHHHHHHHHh
Confidence 66677788888888888877654310 0000000000122445566778888
Q ss_pred CCHHHHHHHHHHHHhCC----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----C--cHHHHHHHHHHHHhc
Q 006624 421 NRVEKAHLLLEEMEEKG----FPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGC----S--SARVYAVMIKHFGKC 490 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~--~~~~~~~li~~~~~~ 490 (638)
|+++.+...+....... ......++......+...++..++...+......... + ....+..+...+...
T Consensus 147 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 147 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 226 (366)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhc
Confidence 89999988888776532 1222345556667777888888888888776542111 1 133456667778888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC
Q 006624 491 GRLSDAVDLFNEMKKLRCKPD---VYTYNALMSGMVRAGMIDDAYSLLRRMEE----DGCVPD-INSHNIILNGLAKSGG 562 (638)
Q Consensus 491 g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~ 562 (638)
|++++|...+....+.....+ ...+..+...+...|++++|...++++.. .+..|+ ..++..+...|.+.|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 999999999988765432222 34456678888999999999999988774 233333 4567788889999999
Q ss_pred HHHHHHHHHHhhhC----CCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 006624 563 PKRAMEIFTKMQHS----EIKP----DAVSYNTILGCLSRAGMFEEAAR 603 (638)
Q Consensus 563 ~~~A~~~~~~m~~~----~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 603 (638)
+++|.+.+++..+. |... ....+..++..+...++.+++.+
T Consensus 307 ~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 307 KSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999987642 2211 12334455666667777666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.8e-08 Score=96.76 Aligned_cols=276 Identities=15% Similarity=0.053 Sum_probs=156.4
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHHCC----CCC-CHHHHHH
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPD---TVTYSALISAFGKLGRDISAIRLFDEMKENG----LQP-TAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g----~~~-~~~~~~~ 271 (638)
.....+...|++++|++++++.+...+..++ ...+..+...+...|++++|++.+++..+.. ..+ ....+..
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 3445556667777777777776665432111 2345556666666777777777776655421 000 1234555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHH
Q 006624 272 LVSIYFKLGEVEKALGLVQEMKGK----GCA--L-TVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC----KPDIVLIN 340 (638)
Q Consensus 272 li~~~~~~g~~~~A~~~~~~m~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~~~~ 340 (638)
+...+...|++..+...+...... +.. + ....+..+...+...|+++.+...+........ .....++.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 666677777777777777665431 111 1 123445566677778888888887777765322 22334555
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006624 341 NLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKT 420 (638)
Q Consensus 341 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 420 (638)
.....+...++...+...+....... ...+..... ....+......+...
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~---------------~~~~~~~~~---------------~~~~~~~~~~~~~~~ 226 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLL---------------GNGKYHSDW---------------ISNANKVRVIYWQMT 226 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH---------------TTSCCCHHH---------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHH---------------HHhcccCch---------------HHHHHHHHHHHHHhc
Confidence 55666667777777776666553310 000000000 112344455667778
Q ss_pred CCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-cHHHHHHHHHHHHhcCC
Q 006624 421 NRVEKAHLLLEEMEEKGFPPC---PAAYCSLINGYGKAKRYEAANELFLELKEY----CGCS-SARVYAVMIKHFGKCGR 492 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~ 492 (638)
|++++|...+++........+ ...+..+...+...|++++|...++.+... +..| ....+..+...|...|+
T Consensus 227 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 227 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 888888888877665432222 234455667777778888887777776532 2222 23455666666777777
Q ss_pred HHHHHHHHHHHHh
Q 006624 493 LSDAVDLFNEMKK 505 (638)
Q Consensus 493 ~~~A~~~~~~m~~ 505 (638)
+++|.+.+++..+
T Consensus 307 ~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 307 KSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.18 E-value=7e-09 Score=97.40 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=135.7
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 006624 175 MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLF 254 (638)
Q Consensus 175 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 254 (638)
..++|..+|++..+..++.+...|...+..+.+.|++++|..+|++++...+. .....|...+..+.+.|+++.|.++|
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~-~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 45777888888776544556677777888888888888888888888876542 23456778888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-
Q 006624 255 DEMKENGLQPTAKIYTTLVSI-YFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC- 332 (638)
Q Consensus 255 ~~m~~~g~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~- 332 (638)
+++.+.+ +.+...|...+.. +...|+.+.|..+|+.+....+. +...|...++.+.+.|+++.|..+|++.++...
T Consensus 158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 8887764 2344445444443 33467888888888888876433 677888888888888888888888888877532
Q ss_pred CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 333 KP--DIVLINNLINVLGRAGRLEDALKLFNKMEA 364 (638)
Q Consensus 333 ~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 364 (638)
.| ....|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 32 245677777777778888888888887755
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=8.6e-09 Score=96.79 Aligned_cols=218 Identities=6% Similarity=0.017 Sum_probs=171.1
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHh--------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 006624 108 KIQFFKWAGRRRNFEHNSTTYMALIRCLDE--------------TRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA 173 (638)
Q Consensus 108 a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (638)
+..+|..+...- ++++..|...+.-+.+ .+..+++..+++..++...+.+...+...+....+.
T Consensus 35 v~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~ 112 (308)
T d2onda1 35 VMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 344555554332 4466667666654433 334578999999998866677788899999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHccCChHHHHH
Q 006624 174 KMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA-FGKLGRDISAIR 252 (638)
Q Consensus 174 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~ 252 (638)
|++++|..+|+++.+..+......|...+..+.+.|.+++|.++|+++++..+. +...|...... +...|+.+.|..
T Consensus 113 ~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~--~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhccCHHHHHH
Confidence 999999999999988755545668999999999999999999999999987763 44444444433 345689999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006624 253 LFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGC-AL--TVYTYTELIKGLGRAGRVEDAYGLFMNMLK 329 (638)
Q Consensus 253 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 329 (638)
+|+.+.+. .+.+...|...+..+.+.|+++.|..+|++...... .| ....|...+..-...|+.+.+..+++++.+
T Consensus 191 i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 191 IFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999986 345788999999999999999999999999887643 33 356788888888889999999999998876
Q ss_pred c
Q 006624 330 E 330 (638)
Q Consensus 330 ~ 330 (638)
.
T Consensus 270 ~ 270 (308)
T d2onda1 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=2.8e-09 Score=97.50 Aligned_cols=197 Identities=15% Similarity=-0.023 Sum_probs=106.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
++..+..+|.+.|++++|+..|++..+..+. ++.+|+.+..+|.+.|++++|++.|+++.+..+ .+..++..+...+
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP--TYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHh--hhhhhHHHHHHHH
Confidence 5555566666667777777777666665433 566666677777777777777777777766554 3455666666666
Q ss_pred HccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----H
Q 006624 242 GKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGR----V 317 (638)
Q Consensus 242 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----~ 317 (638)
...|++++|.+.|+...+.. +.+......+...+.+.+..+.+..+..........+. .++ ++..+..... .
T Consensus 116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHH
Confidence 67777777777777666543 22344433444444455544444444444444322211 111 1222211111 1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCC
Q 006624 318 EDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 318 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 366 (638)
+.+...+........ -...++..+...|...|++++|.+.|+......
T Consensus 192 ~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 192 ERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 112111111111100 012356667778888888888888888877643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=3.3e-09 Score=96.99 Aligned_cols=200 Identities=13% Similarity=-0.000 Sum_probs=144.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 125 STTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
..+|..+..+|.+.|++++|...|+..++.. +-++.++..+..++.+.|++++|+..|+++.+..+. +..++..+..+
T Consensus 37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~ 114 (259)
T d1xnfa_ 37 AQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIA 114 (259)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHH
Confidence 4578888999999999999999999999864 667899999999999999999999999999987544 67889999999
Q ss_pred HHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--
Q 006624 205 LMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEV-- 282 (638)
Q Consensus 205 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-- 282 (638)
|...|++++|.+.|+...+..+ .+......+.....+.+..+.+..+........ ++...++ ++..+......
T Consensus 115 ~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~ 189 (259)
T d1xnfa_ 115 LYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQT 189 (259)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHH
T ss_pred HHHHhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHH
Confidence 9999999999999999998775 455555555555666666666666666655532 2222222 23333222222
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006624 283 --EKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGC 332 (638)
Q Consensus 283 --~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 332 (638)
+.+...+........ -...+|..+...+...|++++|...|+..+...+
T Consensus 190 ~~~~~~~~~~~~~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 190 LMERLKADATDNTSLAE-HLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp HHHHHHHHCCSHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhhcCc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 222222221111110 0234667788999999999999999999998644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.07 E-value=8.9e-10 Score=105.22 Aligned_cols=111 Identities=5% Similarity=-0.038 Sum_probs=62.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 006624 246 RDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLG--EVEKALGLVQEMKGKGCALTVYTYT-ELIKGLGRAGRVEDAYG 322 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~ 322 (638)
++++|+.+++...+.. +-+...|..+..++...+ ++++|...++.+.+..+. +...+. .....+...+.+++|+.
T Consensus 88 ~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHH
Confidence 3556666666665542 234555555555555444 356666666666655433 344332 33345555666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006624 323 LFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLF 359 (638)
Q Consensus 323 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 359 (638)
.++.+++..+. +...|+.+...+.+.|++++|...+
T Consensus 166 ~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 166 FTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp HHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 66666665443 5666666666666666665554333
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=1.7e-09 Score=103.21 Aligned_cols=255 Identities=7% Similarity=-0.010 Sum_probs=182.8
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----------hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 006624 105 INVKIQFFKWAGRRRNFEHNSTTYMALIRCLD----------ETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAK 174 (638)
Q Consensus 105 ~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (638)
.+.|+..+..+.... |.+...|+..-..+. ..|++++|...++..++.. +.+...+..+..++...+
T Consensus 45 ~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 45 DESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp SHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred cHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence 467888888776543 345566665444433 3444778888888888753 667777777777777765
Q ss_pred --CHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHH
Q 006624 175 --MVNKALSIFYQIKSRKCKPTANTYN-SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAI 251 (638)
Q Consensus 175 --~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 251 (638)
++++|...+.++.+..+. +...+. .....+...+.+++|+..++.+...++ .+...|+.+...+.+.|++++|.
T Consensus 122 ~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p--~~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF--SNYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC--CCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCHHHHH
Confidence 588999999998877433 556554 455777788999999999999998876 68888999999999999988887
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006624 252 RLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEG 331 (638)
Q Consensus 252 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 331 (638)
..++...+. .|+ .......+...+..+++...+.......+. +...+..++..+...|+.++|...+.+.....
T Consensus 199 ~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 272 (334)
T d1dcea1 199 PQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPEN 272 (334)
T ss_dssp SCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 666554432 111 122334455567777788888877766543 45556667777788899999999998887764
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHH
Q 006624 332 CKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTY 374 (638)
Q Consensus 332 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 374 (638)
+. +..++..+...+...|++++|.+.++.+.+. .|+...|
T Consensus 273 p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y 312 (334)
T d1dcea1 273 KW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAY 312 (334)
T ss_dssp HH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHH
T ss_pred ch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHH
Confidence 32 5567788888999999999999999999884 4654444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=4.9e-07 Score=77.42 Aligned_cols=125 Identities=14% Similarity=0.057 Sum_probs=79.8
Q ss_pred HHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCCh
Q 006624 168 NILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRD 247 (638)
Q Consensus 168 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 247 (638)
..+...|++++|++.|.++. +|++.+|..+..+|...|++++|++.|++.++.++ .+...|..+..++.+.|++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp--~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh--hhhhhHHHHHHHHHhhccH
Confidence 34556667777776666542 34566666677777777777777777777766654 5566666667777777777
Q ss_pred HHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006624 248 ISAIRLFDEMKENGL--------------QP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA 298 (638)
Q Consensus 248 ~~A~~~~~~m~~~g~--------------~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 298 (638)
++|++.|++...... .+ ...++..+..++.+.|++++|.+.++...+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 777776666654210 00 1244556677777888888888887777765444
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=1.1e-06 Score=75.17 Aligned_cols=141 Identities=10% Similarity=-0.074 Sum_probs=91.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006624 484 IKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGGP 563 (638)
Q Consensus 484 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 563 (638)
...+...|++++|++.|.++. +|+..+|..+..+|...|++++|++.|++.++.. +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 344566777777777776542 4566667777777777777777777777777753 22466777777777777777
Q ss_pred HHHHHHHHHhhhCC------------C--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHh
Q 006624 564 KRAMEIFTKMQHSE------------I--KPD-AVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAVG 628 (638)
Q Consensus 564 ~~A~~~~~~m~~~~------------~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 628 (638)
++|.+.|++..... . .++ ..++..+..++.+.|++++|.+.+++.......++.......+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 77777777765421 0 011 24555667778888888888888888775544444444554455444
Q ss_pred c
Q 006624 629 K 629 (638)
Q Consensus 629 ~ 629 (638)
+
T Consensus 167 ~ 167 (192)
T d1hh8a_ 167 K 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.2e-06 Score=67.92 Aligned_cols=91 Identities=18% Similarity=0.048 Sum_probs=43.4
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...+.+.|++++|+..|++.++..+ .+...|..+..++.+.|++++|++.++...+.. +.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC--cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3344444555555555555544443 344444444444555555555555555444432 2244444445555555555
Q ss_pred HHHHHHHHHHHHhC
Q 006624 282 VEKALGLVQEMKGK 295 (638)
Q Consensus 282 ~~~A~~~~~~m~~~ 295 (638)
+++|+..|++..+.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=1.2e-06 Score=80.87 Aligned_cols=198 Identities=13% Similarity=0.026 Sum_probs=111.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCC----HHHHHH
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSR----KC-KPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPD----TVTYSA 236 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~ 236 (638)
..+.|...|++++|.+.|.+..+. +- ..-..+|+.+..+|.+.|++++|++.|++.........+ ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345566666666666666665432 11 112345667777777777777777777765543211011 234455
Q ss_pred HHHHHH-ccCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHH
Q 006624 237 LISAFG-KLGRDISAIRLFDEMKEN----GLQP-TAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALT------VYTY 304 (638)
Q Consensus 237 l~~~~~-~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~------~~~~ 304 (638)
+...+. ..|++++|++.+++..+. +.++ -..++..++..+.+.|++++|++.|++......... ...+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 555553 357788888777766532 1111 134567777888888888888888887766432211 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHc--cCCHHHHHHHHHHHH
Q 006624 305 TELIKGLGRAGRVEDAYGLFMNMLKEGCK-PD---IVLINNLINVLGR--AGRLEDALKLFNKME 363 (638)
Q Consensus 305 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 363 (638)
...+..+...|+++.|...+++..+..+. ++ ......++.++.. .+.+++|+..|+.+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 34445566778888888888777664321 11 2234455555544 234667777666543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=1.3e-06 Score=80.57 Aligned_cols=203 Identities=9% Similarity=0.000 Sum_probs=141.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCC-----CCCHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRS----TCV-MGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKC-----KPTAN 196 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~ 196 (638)
.|.....+|...|++++|...|..+... +-+ .-..+|..+..+|.+.|++++|...|++..+... .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 4556678899999999999999887653 111 1235788899999999999999999998755311 11244
Q ss_pred HHHHHHHHHHh-cCCHhHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH-----
Q 006624 197 TYNSMILMLMQ-EGYYEKIHELYNEMCNEGNCFP----DTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTA----- 266 (638)
Q Consensus 197 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~----- 266 (638)
++..+...|.. .|++++|++.|++......... -..++..+...+...|++++|++.|+++.........
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~ 198 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence 56667777754 6999999999998764311101 1345788899999999999999999998875322111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 006624 267 -KIYTTLVSIYFKLGEVEKALGLVQEMKGKGCA-LT---VYTYTELIKGLGR--AGRVEDAYGLFMNMLK 329 (638)
Q Consensus 267 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~---~~~~~~li~~~~~--~g~~~~A~~~~~~~~~ 329 (638)
..+...+..+...|+++.|.+.+++..+..+. ++ ......++.++.. .+.+++|+..|+.+.+
T Consensus 199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 23445566777899999999999998876432 12 2244556666554 3457888888866543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.3e-06 Score=67.78 Aligned_cols=92 Identities=17% Similarity=0.062 Sum_probs=67.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccC
Q 006624 166 IVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLG 245 (638)
Q Consensus 166 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 245 (638)
-.+.+.+.|++++|+..|.+..+..+. +...|..+..+|...|++++|++.++..++.++ .+...|..+..++...|
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP--DWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhcc--chhhHHHHHHHHHHHcc
Confidence 346667777777777777777766433 667777777777777777777777777777665 56777777777777777
Q ss_pred ChHHHHHHHHHHHHC
Q 006624 246 RDISAIRLFDEMKEN 260 (638)
Q Consensus 246 ~~~~A~~~~~~m~~~ 260 (638)
++++|+..|++..+.
T Consensus 86 ~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH 100 (117)
T ss_dssp CHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777777764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.53 E-value=4e-05 Score=69.19 Aligned_cols=224 Identities=13% Similarity=0.016 Sum_probs=155.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006624 124 NSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK----AKMVNKALSIFYQIKSRKCKPTANTYN 199 (638)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 199 (638)
|+..+..+...+.+.+++++|++.|+...+.| +...+..+...|.. ..++..|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45667777788888899999999999887754 56677777777765 568888888888887764 455555
Q ss_pred HHHHHHHh----cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006624 200 SMILMLMQ----EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFG----KLGRDISAIRLFDEMKENGLQPTAKIYTT 271 (638)
Q Consensus 200 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 271 (638)
.+...+.. ....+.|...++.....+. +.. ...+...+. .......+...+...... .+...+..
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a--~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~ 147 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEG--CASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTI 147 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHH--HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhh--hhH--HHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhh
Confidence 56555543 4577888888888887653 222 222222222 234566777777776664 36677777
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 272 LVSIYFK----LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGR----AGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 272 li~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
|...+.. ..+...+...++...+.| +......+...|.. ..++++|+.+|+...+.| ++..+..|.
T Consensus 148 L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG 221 (265)
T d1ouva_ 148 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 221 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred hhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHH
Confidence 7777775 456777888888777764 55666666655554 567888999998888876 456667777
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHCC
Q 006624 344 NVLGR----AGRLEDALKLFNKMEALQ 366 (638)
Q Consensus 344 ~~~~~----~g~~~~A~~~~~~~~~~~ 366 (638)
..|.+ ..+.++|.++|++..+.|
T Consensus 222 ~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 222 AMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 77765 347788888888887655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=1.9e-06 Score=71.28 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=49.9
Q ss_pred HHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006624 202 ILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGE 281 (638)
Q Consensus 202 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 281 (638)
...|.+.|++++|+..|++.++..+ .+...|..+...+...|++++|++.|+++++.. +-+..+|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCC
Confidence 3445555555555555555555544 455555555555555555555555555555542 2234555555555555555
Q ss_pred HHHHHHHHHHHHhCC
Q 006624 282 VEKALGLVQEMKGKG 296 (638)
Q Consensus 282 ~~~A~~~~~~m~~~~ 296 (638)
+++|.+.+++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 555555555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=1.4e-06 Score=71.97 Aligned_cols=118 Identities=15% Similarity=0.059 Sum_probs=68.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCC
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGR 246 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 246 (638)
.+.|.+.|++++|+..|.+..+..+. +...|..+...|...|++++|++.|+++++..+ .+...|..++.++...|+
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p--~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK--KYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcc--cchHHHHHHHHHHHHcCC
Confidence 35566666666666666666665433 566666666666666666666666666666554 455666666666666666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHH
Q 006624 247 DISAIRLFDEMKENGLQPTAKIYTTLVSI--YFKLGEVEKALGL 288 (638)
Q Consensus 247 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~ 288 (638)
+++|.+.+++..+.. +-+...+..+..+ ..+.+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 666666666666643 1233433333322 2333445555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.45 E-value=1.3e-06 Score=75.51 Aligned_cols=95 Identities=14% Similarity=-0.041 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 006624 161 SVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISA 240 (638)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 240 (638)
..+....+.|.+.|++++|+..|.+..+..+. ++..|+.+..+|.+.|++++|+..|+++++..+ -+..+|..+..+
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p--~~~~a~~~lg~~ 81 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG--QSVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC--CcHHHHHHHHHH
Confidence 33334444444444444444444444443222 444444444444444444444444444444332 233444444444
Q ss_pred HHccCChHHHHHHHHHHH
Q 006624 241 FGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 241 ~~~~g~~~~A~~~~~~m~ 258 (638)
+.+.|++++|+..|+++.
T Consensus 82 ~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 444444444444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.44 E-value=0.0002 Score=64.36 Aligned_cols=60 Identities=13% Similarity=0.041 Sum_probs=27.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 006624 233 TYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK----LGEVEKALGLVQEMKGK 295 (638)
Q Consensus 233 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 295 (638)
.+..|...+...|++++|++.|++..+.| +...+..|...|.. ..+...|...++.....
T Consensus 4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~ 67 (265)
T d1ouva_ 4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 67 (265)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc
Confidence 34444444444555555555555554443 33444444444443 33444444444444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.37 E-value=2.5e-06 Score=73.74 Aligned_cols=99 Identities=14% Similarity=0.091 Sum_probs=60.3
Q ss_pred CCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006624 193 PTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 193 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
|++..+...+..|.+.|++++|+..|++++...+ .+...|..+..+|.+.|++++|+..|++.++.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 4555555666666666666666666666666554 455666666666666666666666666665532 1235556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 006624 273 VSIYFKLGEVEKALGLVQEMKG 294 (638)
Q Consensus 273 i~~~~~~g~~~~A~~~~~~m~~ 294 (638)
..+|.+.|++++|+..|++..+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666666666666665543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.33 E-value=2.4e-06 Score=65.51 Aligned_cols=85 Identities=12% Similarity=0.001 Sum_probs=36.9
Q ss_pred HHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChH
Q 006624 169 ILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDI 248 (638)
Q Consensus 169 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 248 (638)
.+.+.|++++|+..|++..+..+. ++.+|..+..++.+.|++++|+..|++.++..+ .+...+..+...+...|+++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHHHHHCCCHH
Confidence 334444444444444444433222 344444444444444444444444444444333 33444444444444444444
Q ss_pred HHHHHHHH
Q 006624 249 SAIRLFDE 256 (638)
Q Consensus 249 ~A~~~~~~ 256 (638)
+|++.+++
T Consensus 102 ~A~~~l~~ 109 (112)
T d1hxia_ 102 AALASLRA 109 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.6e-06 Score=66.16 Aligned_cols=107 Identities=8% Similarity=0.025 Sum_probs=74.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCC-HHHHHHHHHH
Q 006624 516 NALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKSGG---PKRAMEIFTKMQHSEIKPD-AVSYNTILGC 591 (638)
Q Consensus 516 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~ 591 (638)
..++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456677777888888888888888764 3467777778888776544 4568888888776443333 2366778888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 006624 592 LSRAGMFEEAARLMKDMNAKGFEYDQITYSSILE 625 (638)
Q Consensus 592 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 625 (638)
|.+.|++++|.+.|+++.+ +.|+..-...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--TEPQNNQAKELER 113 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHHH
Confidence 8888888888888888885 3566554444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.24 E-value=5.5e-06 Score=63.41 Aligned_cols=90 Identities=10% Similarity=0.070 Sum_probs=59.5
Q ss_pred HHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 200 SMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 200 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+...+.+.|++++|+..|++.+...+ .+...|..+...+.+.|++++|+..|++..+.. +.+..++..+...|...
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEP--EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccccc--ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 345566667777777777777776654 456666777777777777777777777766653 23466666666677777
Q ss_pred CCHHHHHHHHHHH
Q 006624 280 GEVEKALGLVQEM 292 (638)
Q Consensus 280 g~~~~A~~~~~~m 292 (638)
|++++|++.+++.
T Consensus 98 g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 98 HNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 7777776666654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=4.8e-06 Score=64.63 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=56.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 006624 130 ALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKM---VNKALSIFYQIKSRKCKPT-ANTYNSMILML 205 (638)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 205 (638)
.+++.+...+++++|.+.|+..+..+ +.++.++..+..++.+.++ +++|+.+|+++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 45556666666666666666666643 5556666666666655443 3346666666665533332 23555666666
Q ss_pred HhcCCHhHHHHHHHHHHhCC
Q 006624 206 MQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+.|++++|++.|+++++..
T Consensus 83 ~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhHHHHHHHHHHHHhC
Confidence 66666666666666666655
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=5.5e-05 Score=62.76 Aligned_cols=62 Identities=13% Similarity=-0.026 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKE 330 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 330 (638)
+|+.+..+|.+.|++++|+..++..+..++. ++.+|..+..+|...|++++|+..|+..++.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3444555555555555555555555554433 4555555555555555555555555555554
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=5.5e-05 Score=62.76 Aligned_cols=127 Identities=8% Similarity=-0.116 Sum_probs=69.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
.+......+.+.|++++|+..|.+.+........ ....-......+ ...+|+.+..+|.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~--------------~~~~~~~~~~~~-------~~~~~~nla~~y~ 73 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS--------------FSNEEAQKAQAL-------RLASHLNLAMCHL 73 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC--------------CCSHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc--------------cchHHHhhhchh-------HHHHHHHHHHHHH
Confidence 4455666777788888888888776653110000 000000000000 1234555666666
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYF 277 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 277 (638)
+.|++++|+..++..+...| .+...+..+..++...|++++|+..|++..+.. +-|..+...+..+.-
T Consensus 74 k~~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 74 KLQAFSAAIESCNKALELDS--NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred hhhhcccccchhhhhhhccc--cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 66777777777766666654 466666666666667777777777776666643 124444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=3e-05 Score=60.84 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=26.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHh
Q 006624 167 VNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCN 223 (638)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 223 (638)
.+.+.+.|++++|+..|.+..+.++. +...+..+..+|.+.|++++|++.++++++
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34444445555555555444444322 444444455555555555555555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.0057 Score=55.84 Aligned_cols=271 Identities=13% Similarity=0.075 Sum_probs=145.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 006624 299 LTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVI 378 (638)
Q Consensus 299 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll 378 (638)
||..-....++-|.+.|.++.|..+|..+. -|..++..+.+.+++..|.+.+.+. -+..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence 344444455566667777777777776443 2445566666777777776666544 2455666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCH
Q 006624 379 KSLFESKAPASEASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRY 458 (638)
Q Consensus 379 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 458 (638)
..+.......- ..+.......++.....++..|-..|.+++...+++...... +.+...++.++..|++.+.
T Consensus 77 ~~l~~~~e~~l------a~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~- 148 (336)
T d1b89a_ 77 FACVDGKEFRL------AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKP- 148 (336)
T ss_dssp HHHHHTTCHHH------HHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-
T ss_pred HHHHhCcHHHH------HHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-
Confidence 66555443221 122233334455566677788888888888888888776543 5666777788888877643
Q ss_pred HHHHHHHHHHHHcCCCCc----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCH
Q 006624 459 EAANELFLELKEYCGCSS----------ARVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVRAGMI 528 (638)
Q Consensus 459 ~~A~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 528 (638)
++..+.+... ...-+ ...|..++..|.+.|++++|..+.-. . .++..-....+..+.+.++.
T Consensus 149 ~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~ 220 (336)
T d1b89a_ 149 QKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANV 220 (336)
T ss_dssp HHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSST
T ss_pred HHHHHHHHhc---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCCh
Confidence 3333333222 11111 11245566666677777766655432 1 23333344455666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 006624 529 DDAYSLLRRMEEDGCVPDINS-----------HNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGM 597 (638)
Q Consensus 529 ~~A~~~~~~~~~~~~~p~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 597 (638)
+...++..-.++. .|+... ...++..+.+.+++.-...+++...+.| +....+++...|...++
T Consensus 221 e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d 295 (336)
T d1b89a_ 221 ELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEED 295 (336)
T ss_dssp HHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcch
Confidence 6666655555542 232110 1223444555566666666666655444 34678899999999998
Q ss_pred HHHHHHHH
Q 006624 598 FEEAARLM 605 (638)
Q Consensus 598 ~~~A~~~~ 605 (638)
++.-.+.+
T Consensus 296 ~~~l~~~i 303 (336)
T d1b89a_ 296 YQALRTSI 303 (336)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHH
Confidence 76644443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.99 E-value=8.7e-05 Score=60.20 Aligned_cols=124 Identities=8% Similarity=-0.102 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILML 205 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (638)
..+..-...+.+.|++.+|+..|++.+..-.... . ..+.... ..... ....+|+.+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~-~~~~~~~--~~~~~----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------E-WDDQILL--DKKKN----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------T-CCCHHHH--HHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------h-hhhHHHH--Hhhhh----HHHHHHhhHHHHH
Confidence 3455566777888888888888888776311000 0 0000000 00000 0234566677777
Q ss_pred HhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006624 206 MQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTL 272 (638)
Q Consensus 206 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 272 (638)
.+.|++++|++.+++++..++ .+..+|..+..++...|++++|+..|+...+.. +-|..+...+
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p--~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDK--NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHhcccchhhhhhhccccccc--hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 777777777777777777665 567777777777777777777777777777653 1234444433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=0.006 Score=55.68 Aligned_cols=46 Identities=13% Similarity=0.213 Sum_probs=16.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHH
Q 006624 165 EIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYN 219 (638)
Q Consensus 165 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 219 (638)
.++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~ 64 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGAR 64 (336)
T ss_dssp ----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHH
Confidence 344444455555555555544322 2334444444455555444443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=4.2e-05 Score=59.94 Aligned_cols=97 Identities=12% Similarity=0.134 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC-CC-----HHHHH
Q 006624 197 TYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ-PT-----AKIYT 270 (638)
Q Consensus 197 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~-~~-----~~~~~ 270 (638)
.+..++..+.+.|++++|++.|++.++.++ .+...+..+..+|.+.|++++|++.++++++.... +. ..+|.
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 455677888889999999999999888776 67888888888899999999999988887763200 01 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC
Q 006624 271 TLVSIYFKLGEVEKALGLVQEMKGK 295 (638)
Q Consensus 271 ~li~~~~~~g~~~~A~~~~~~m~~~ 295 (638)
.+...+...+++++|++.|++....
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 6777777778888888888776654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.96 E-value=6.6e-05 Score=62.25 Aligned_cols=129 Identities=9% Similarity=-0.018 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006624 128 YMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQ 207 (638)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (638)
+......+.+.|++.+|+..|.++++.. ..........+.. ... +.....|..+..++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHh
Confidence 3445566777888888888887765410 0000000001000 000 1134455666666677
Q ss_pred cCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 208 EGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 208 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.|++++|+..++++++..+ .+...|..+..++...|++++|++.|++..+.. +.+..+...+..+..+.
T Consensus 90 ~~~~~~Ai~~~~~al~~~p--~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~l 158 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDP--SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKI 158 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhh--hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 7777777777777766654 566666667777777777777777777766653 22444555555444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.92 E-value=0.00026 Score=57.32 Aligned_cols=79 Identities=11% Similarity=-0.019 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006624 231 TVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKG 310 (638)
Q Consensus 231 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 310 (638)
..+|..+..+|.+.|++++|++.+++.++.. +.+..+|..+..++...|++++|+..|++..+.++. +......+-.+
T Consensus 67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l~~~ 144 (153)
T d2fbna1 67 ISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELC 144 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3567889999999999999999999999874 457899999999999999999999999999988654 56665555444
Q ss_pred H
Q 006624 311 L 311 (638)
Q Consensus 311 ~ 311 (638)
.
T Consensus 145 ~ 145 (153)
T d2fbna1 145 V 145 (153)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=0.00011 Score=60.85 Aligned_cols=127 Identities=8% Similarity=-0.096 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006624 126 TTYMALIRCLDETRMIGVMWKSIQDMVRS---TCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMI 202 (638)
Q Consensus 126 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 202 (638)
..+......+.+.|++.+|...|...+.. ....+.. . ......+ ....|+.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~----------------~-~~~~~~~-------~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK----------------E-SKASESF-------LLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH----------------H-HHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh----------------h-hhhcchh-------HHHHHHhHH
Confidence 45666777888899999999888876542 1111100 0 0000000 123445556
Q ss_pred HHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 203 LMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKL 279 (638)
Q Consensus 203 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 279 (638)
.+|.+.|++++|+..++..+...+ .+...|..+..++...|++++|...|+++.+.. +.+..+...+..+..+.
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p--~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcccchhhhhhhhhccc--chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 666666666666666666666554 556666666666666666666666666666542 22444444444443333
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.88 E-value=9.9e-05 Score=61.12 Aligned_cols=133 Identities=13% Similarity=-0.028 Sum_probs=94.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
......+.+.|++++|+..|.+..+. ...........+ .....+ .+...|..+...+.+
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~-------~~~~~~--~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDAD-------GAKLQP--VALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHH-------HGGGHH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHH-------HHHhCh--hhHHHHHHHHHHHHh
Confidence 34456777889999999888877542 000011111111 111111 355678888999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006624 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVED 319 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 319 (638)
.|++++|+..++++++.. +.+..+|..+..++...|++++|++.|++..+..+. +......+..+..+.....+
T Consensus 90 ~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999864 457889999999999999999999999999998655 77777777666555444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.85 E-value=0.0002 Score=59.58 Aligned_cols=126 Identities=11% Similarity=0.071 Sum_probs=82.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006624 127 TYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLM 206 (638)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (638)
........+...|++++|...|...+... ++.. +......+.+...-..+... ....+..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~ 78 (179)
T d2ff4a2 13 AEKTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33445567778888888888888877641 1110 00001111111122222221 3456777888888
Q ss_pred hcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHH-----CCCCCCHHH
Q 006624 207 QEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKE-----NGLQPTAKI 268 (638)
Q Consensus 207 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~ 268 (638)
+.|++++|+..+++++...+ -+...|..++.++.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 79 ~~g~~~~Al~~~~~al~~~P--~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHP--YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HCCCchHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88999999998888888776 6788888888888888888888888888743 477777654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.83 E-value=8.2e-06 Score=81.33 Aligned_cols=227 Identities=11% Similarity=0.059 Sum_probs=110.5
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHH
Q 006624 107 VKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGP-SVLSEIVNILGKAKMVNKALSIFYQ 185 (638)
Q Consensus 107 ~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 185 (638)
.|.+.|+.+.... +....+|..+..++...|++++| +++++..+ |+. ..++.....+ + ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~l~--p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVLK--ADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHHH--GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence 4556666554322 11223445556666666666655 45544421 111 1111111111 1 123455666666
Q ss_pred HhhCCCCCCHHHHHH--HHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCC
Q 006624 186 IKSRKCKPTANTYNS--MILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQ 263 (638)
Q Consensus 186 ~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 263 (638)
..+....++..-... ........+.++.|+..+.......+ ++...+..+...+.+.|+.++|...++......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL--PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI-- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------CCHHHHHH--
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh--hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence 554432222222211 11222234556666666555554433 556667777777888888888887776665431
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006624 264 PTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLI 343 (638)
Q Consensus 264 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 343 (638)
...++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|+..|.+.+... .|-..++..|.
T Consensus 151 -~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 -CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 2346677788888888888888888888877654 66788888888888888888888888887764 35677777777
Q ss_pred HHHHcc
Q 006624 344 NVLGRA 349 (638)
Q Consensus 344 ~~~~~~ 349 (638)
..+.+.
T Consensus 228 ~~~~~~ 233 (497)
T d1ya0a1 228 KALSKA 233 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.83 E-value=0.00041 Score=57.08 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006624 268 IYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLG 347 (638)
Q Consensus 268 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 347 (638)
+|+.+..+|.+.|++++|+..++..+..++. +..+|..+..++...|++++|...|+++++..+. +..+...+..+..
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 143 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 4455566666666666666666666665443 5666666666666666666666666666654322 4444444444433
Q ss_pred c
Q 006624 348 R 348 (638)
Q Consensus 348 ~ 348 (638)
+
T Consensus 144 ~ 144 (168)
T d1kt1a1 144 K 144 (168)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.77 E-value=0.00046 Score=57.26 Aligned_cols=124 Identities=14% Similarity=0.068 Sum_probs=73.7
Q ss_pred HHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006624 199 NSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFK 278 (638)
Q Consensus 199 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 278 (638)
..........|++++|.+.|.+.+......+- ......+.+...-..+... ....+..++..+.+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l-----------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVL-----------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTT-----------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCccccc-----------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33445667777888888777777764321010 0011111111111222211 23456667777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 006624 279 LGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGLFMNMLK-----EGCKPDIVL 338 (638)
Q Consensus 279 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 338 (638)
.|++++|+..++.+.+..+. +...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 77777777777777776654 777777777777777777777777777643 366666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.76 E-value=1e-05 Score=80.62 Aligned_cols=134 Identities=13% Similarity=-0.013 Sum_probs=65.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006624 421 NRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDAVDLF 500 (638)
Q Consensus 421 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 500 (638)
+.++.|+..+....+.. +++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34445544444433332 4445566666667777777777776666655421 1345666777777777777777777
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006624 501 NEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAKS 560 (638)
Q Consensus 501 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 560 (638)
++..+.. +.+...|+.|...+...|+..+|...|.+.+... +|-..++..|...+.+.
T Consensus 176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 7777653 2335677777777777788777777777777653 45666777776666543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.73 E-value=7.2e-05 Score=59.99 Aligned_cols=71 Identities=6% Similarity=-0.047 Sum_probs=40.4
Q ss_pred hCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------CCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 006624 172 KAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQE----------GYYEKIHELYNEMCNEGNCFPDTVTYSALISAF 241 (638)
Q Consensus 172 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (638)
+.+.+++|+..|+...+..+. ++.++..+..+|... +.+++|++.|+++++.+| .+..+|..+..+|
T Consensus 9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P--~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hhhHHHhhHHHHH
Confidence 344556666666666555433 555565555555532 334566667777666654 4566666666666
Q ss_pred HccC
Q 006624 242 GKLG 245 (638)
Q Consensus 242 ~~~g 245 (638)
...|
T Consensus 86 ~~~g 89 (145)
T d1zu2a1 86 TSFA 89 (145)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 5443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.65 E-value=4.1e-05 Score=68.34 Aligned_cols=54 Identities=19% Similarity=0.164 Sum_probs=33.8
Q ss_pred HhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCC
Q 006624 171 GKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEG 225 (638)
Q Consensus 171 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 225 (638)
.+.|++++|+..|++.++..+. +...+..++..|+..|++++|.+.|+...+..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~ 60 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF 60 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3456666666666666665433 56666666666666666666666666666654
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.59 E-value=0.00019 Score=57.36 Aligned_cols=116 Identities=14% Similarity=0.218 Sum_probs=74.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 006624 135 LDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKA----------KMVNKALSIFYQIKSRKCKPTANTYNSMILM 204 (638)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 204 (638)
|-+.+.+++|+..++..++.. |.++.++..+..++... +.+++|+..|++..+..+. +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 344555677777777766653 55666666666666532 4457888888888877544 78888888888
Q ss_pred HHhcCC-----------HhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 006624 205 LMQEGY-----------YEKIHELYNEMCNEGNCFPDTVTYSALISAFGKLGRDISAIRLFDEMKENG 261 (638)
Q Consensus 205 ~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 261 (638)
|...|+ +++|.+.|++.+... |+...|..-+..+ .+|.+++.+..+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~---P~~~~~~~~L~~~------~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---PDNTHYLKSLEMT------AKAPQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhcccccC---CCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence 876553 577888888887765 4444443333322 34666666666654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.55 E-value=9.4e-05 Score=65.92 Aligned_cols=123 Identities=13% Similarity=0.000 Sum_probs=70.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHH
Q 006624 417 FCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSARVYAVMIKHFGKCGRLSDA 496 (638)
Q Consensus 417 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 496 (638)
..+.|++++|+..+++.++.. |.+...+..++..++..|++++|.+.++...+. .+.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l-~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL-FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhccccHHH
Confidence 345678888888888888776 777788888888888888888888888887775 223344444444433322222222
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006624 497 VDLFNEMKKLRCKPDVYTYNALMSGMVRAGMIDDAYSLLRRMEED 541 (638)
Q Consensus 497 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 541 (638)
..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111111112233333445566677777777777776653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.48 E-value=0.00097 Score=53.95 Aligned_cols=63 Identities=14% Similarity=0.154 Sum_probs=36.0
Q ss_pred HHHHHH--HHHHHhcCCHhHHHHHHHHHHhCCCCCCC----------HHHHHHHHHHHHccCChHHHHHHHHHHH
Q 006624 196 NTYNSM--ILMLMQEGYYEKIHELYNEMCNEGNCFPD----------TVTYSALISAFGKLGRDISAIRLFDEMK 258 (638)
Q Consensus 196 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 258 (638)
.+|..+ ...+.+.|++++|++.|++.+...+..|+ ...|+.+..+|.+.|++++|.+.+++..
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al 82 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL 82 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence 345555 44555667777777777777654432232 2345555555666666666655555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.29 E-value=0.0023 Score=51.57 Aligned_cols=97 Identities=26% Similarity=0.196 Sum_probs=65.0
Q ss_pred hHHHH--HHHHHHcCCHHHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----
Q 006624 514 TYNAL--MSGMVRAGMIDDAYSLLRRMEEDGC-VP----------DINSHNIILNGLAKSGGPKRAMEIFTKMQHS---- 576 (638)
Q Consensus 514 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~-~p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 576 (638)
+|..+ ...+...|++++|+..|++.++... .| ....|+.+..+|.+.|++++|...+++.++.
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 34444 3445566777777777777775210 01 1356777888888888888888888887641
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006624 577 -EIKPD-----AVSYNTILGCLSRAGMFEEAARLMKDMNA 610 (638)
Q Consensus 577 -~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 610 (638)
...++ ...|..+..+|...|++++|.+.|++..+
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 22467788899999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=0.0018 Score=47.00 Aligned_cols=65 Identities=9% Similarity=-0.034 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhCC-----CCC-CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 162 VLSEIVNILGKAKMVNKALSIFYQIKSRK-----CKP-TANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 162 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
.+..+...+.+.|++++|+..|++..+.. ..+ ...+++.+..++.+.|++++|++.|+++++..|
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P 77 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc
Confidence 34445555555555555555555543320 011 134555566666666666666666666665543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.88 E-value=0.0033 Score=45.45 Aligned_cols=67 Identities=16% Similarity=0.003 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCC----CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHHC
Q 006624 194 TANTYNSMILMLMQEGYYEKIHELYNEMCNEGNC----FPD-TVTYSALISAFGKLGRDISAIRLFDEMKEN 260 (638)
Q Consensus 194 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 260 (638)
+...+-.++..+.+.|++++|+..|++.++..+. .++ ..++..+..++.+.|++++|++.++++++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4555666777777888888888887777653211 011 345666666666666666666666666664
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.48 E-value=0.048 Score=41.96 Aligned_cols=82 Identities=10% Similarity=-0.020 Sum_probs=47.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cC
Q 006624 525 AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSR----AG 596 (638)
Q Consensus 525 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g 596 (638)
..+.++|.+.+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.+ ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 345666666666666654 44444445555443 335667777777766654 33444445555544 34
Q ss_pred CHHHHHHHHHHHHhCC
Q 006624 597 MFEEAARLMKDMNAKG 612 (638)
Q Consensus 597 ~~~~A~~~~~~m~~~~ 612 (638)
+.++|.+++++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 6777777777776665
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.34 E-value=0.078 Score=40.67 Aligned_cols=80 Identities=11% Similarity=-0.027 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCH
Q 006624 492 RLSDAVDLFNEMKKLRCKPDVYTYNALMSGMVR----AGMIDDAYSLLRRMEEDGCVPDINSHNIILNGLAK----SGGP 563 (638)
Q Consensus 492 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~ 563 (638)
+.++|+..+++..+.| +......|...|.. ..+.++|.++|++..+.| +......|...|.. ..+.
T Consensus 38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence 4445555555544433 23333333333332 234566666666666554 33444444444443 2356
Q ss_pred HHHHHHHHHhhhCC
Q 006624 564 KRAMEIFTKMQHSE 577 (638)
Q Consensus 564 ~~A~~~~~~m~~~~ 577 (638)
++|.++|++..+.|
T Consensus 112 ~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 112 KQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666655544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.36 E-value=0.32 Score=35.59 Aligned_cols=66 Identities=23% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006624 547 INSHNIILNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGF 613 (638)
Q Consensus 547 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 613 (638)
...++..++.+.++|+-+.-.++++.+.+ +-+|++...-.+..+|.+.|...++.+++.+.-++|+
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34445556666677777777777776555 3356666666777777777777777777777776664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.87 E-value=0.46 Score=34.75 Aligned_cols=140 Identities=11% Similarity=0.059 Sum_probs=87.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCChHHH
Q 006624 311 LGRAGRVEDAYGLFMNMLKEGCKPDIVLINNLINVLGRAGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLFESKAPASE 390 (638)
Q Consensus 311 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 390 (638)
+.-.|.+++..++..+.... .+..-||.++.-....-+-+...+.++.+.+. .|.. ..++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHH
Confidence 34467777778877777664 24555666666555556666666666665331 1111 11111111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 006624 391 ASAWFEKMKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKE 470 (638)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 470 (638)
. ...+... .+...+...++.+.+.|+-++-.++++++.+.+ .+++.....+..+|.+.|...++.+++.++.+
T Consensus 76 -v--~C~~~~n---~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 76 -V--ECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp -H--HHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -H--HHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 1 1111111 234455666778888888888888888877765 78888888888889999988888888888887
Q ss_pred cCC
Q 006624 471 YCG 473 (638)
Q Consensus 471 ~~~ 473 (638)
.|.
T Consensus 149 ~G~ 151 (161)
T d1wy6a1 149 KGE 151 (161)
T ss_dssp TTC
T ss_pred HhH
Confidence 765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.23 Score=36.76 Aligned_cols=69 Identities=9% Similarity=-0.026 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhCC---CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCC
Q 006624 158 MGPSVLSEIVNILGKAK---MVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGN 226 (638)
Q Consensus 158 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 226 (638)
+++.+-...+-++.+.. +.++++.+++++.+.++......+..+..+|.+.|++++|.+.++.+++..|
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44445445555555443 3446666666665543221234555666666677777777777777766553
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.34 E-value=0.54 Score=32.54 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 006624 562 GPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDMNAKGFEYDQITYSSILEAV 627 (638)
Q Consensus 562 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 627 (638)
+.=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+.+ +.++..+|..+++-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 44467777777777788899999999999999999999999999888764 344566787776644
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.57 E-value=0.85 Score=33.60 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHccC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006624 229 PDTVTYSALISAFGKLG---RDISAIRLFDEMKENGLQPT-AKIYTTLVSIYFKLGEVEKALGLVQEMKGKG 296 (638)
Q Consensus 229 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 296 (638)
+...+-....-++++.. +.++++.++++..+.+ +.+ ...+..|.-+|.+.|++++|.+.++.+++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 33444444444444332 3345555555555432 112 2344445555555555555555555555543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.97 E-value=5 Score=37.54 Aligned_cols=52 Identities=6% Similarity=-0.044 Sum_probs=37.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006624 554 LNGLAKSGGPKRAMEIFTKMQHSEIKPDAVSYNTILGCLSRAGMFEEAARLMKDM 608 (638)
Q Consensus 554 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m 608 (638)
+..+...|....|...|..+... .+......+.....+.|.++.|+....+.
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 45567778888888888877653 24555666777778888888888766665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.80 E-value=5.2 Score=37.40 Aligned_cols=353 Identities=11% Similarity=0.027 Sum_probs=195.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHc
Q 006624 164 SEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHELYNEMCNEGNCFPDTVTYSALISAFGK 243 (638)
Q Consensus 164 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (638)
...+..+.+.++++..+..|. . .+.+...-.....+....|+.++|.+.+..+-..+...|+.
T Consensus 76 ~~~l~~L~~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~------------ 138 (450)
T d1qsaa1 76 SRFVNELARREDWRGLLAFSP----E-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA------------ 138 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC----S-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH------------
T ss_pred HHHHHHHHhccCHHHHHHhcc----C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH------------
Confidence 344556666777665444331 1 12345554556677777777777777777766655433332
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006624 244 LGRDISAIRLFDEMKENGLQPTAKIYTTLVSIYFKLGEVEKALGLVQEMKGKGCALTVYTYTELIKGLGRAGRVEDAYGL 323 (638)
Q Consensus 244 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 323 (638)
...+|..+.+.| ..+...+-.-+......|++..|..+...+... ........+........+.. .
T Consensus 139 ------c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~~---~ 204 (450)
T d1qsaa1 139 ------CDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVLT---F 204 (450)
T ss_dssp ------HHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHHH---H
T ss_pred ------HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHHH---H
Confidence 233444444443 244444445555666677887777776543221 33344444444333222222 1
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH----hcCChHHHHHHHHHH
Q 006624 324 FMNMLKEGCKPDIVLINNLINVLGR--AGRLEDALKLFNKMEALQCKPNVVTYNTVIKSLF----ESKAPASEASAWFEK 397 (638)
Q Consensus 324 ~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~ 397 (638)
. .. ..++......+..++.+ ..+.+.|..++......... +...+...-..+. ..+....+ ..++..
T Consensus 205 ~---~~--~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a-~~~~~~ 277 (450)
T d1qsaa1 205 A---RT--TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQ-AKWRDD 277 (450)
T ss_dssp H---HH--SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHH-HHHHHH
T ss_pred H---hc--CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHH-HHHHHh
Confidence 1 11 12233333333333333 35778888888887653322 2222222222222 22333333 566666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH
Q 006624 398 MKANGVLPSPFTYSILIDGFCKTNRVEKAHLLLEEMEEKGFPPCPAAYCSLINGYGKAKRYEAANELFLELKEYCGCSSA 477 (638)
Q Consensus 398 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 477 (638)
....+ .+.....-.+......+++..+...+..+.... ........-+..++...|+.++|...|..+... ++
T Consensus 278 ~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~- 350 (450)
T d1qsaa1 278 AIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG- 350 (450)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS-
T ss_pred hcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC-
Confidence 65553 344444445556677889999998888775432 233445566788899999999999999998753 33
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CC-Hhh---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006624 478 RVYAVMIKHFGKCGRLSDAVDLFNEMKKLRCK--PD-VYT---YNALMSGMVRAGMIDDAYSLLRRMEEDGCVPDINSHN 551 (638)
Q Consensus 478 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 551 (638)
-|..|...-.... +. +...... +. ... -..-+..+...|....|...|..+... .+.....
T Consensus 351 -fYG~LAa~~Lg~~-~~--------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~ 417 (450)
T d1qsaa1 351 -FYPMVAAQRIGEE-YE--------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQA 417 (450)
T ss_dssp -HHHHHHHHHTTCC-CC--------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHH
T ss_pred -hHHHHHHHHcCCC-CC--------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHH
Confidence 4544433221110 00 0000000 00 000 112345677899999999999988864 2555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhh
Q 006624 552 IILNGLAKSGGPKRAMEIFTKMQ 574 (638)
Q Consensus 552 ~l~~~~~~~g~~~~A~~~~~~m~ 574 (638)
.+.....+.|.++.|+....+..
T Consensus 418 ~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 418 QLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCCChhHHHHHHHHHH
Confidence 77888899999999998887764
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| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.14 E-value=1.2 Score=30.84 Aligned_cols=63 Identities=16% Similarity=0.227 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006624 140 MIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGKAKMVNKALSIFYQIKSRKCKPTANTYNSMIL 203 (638)
Q Consensus 140 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 203 (638)
+.-++.+-+..+...+..|++.+..+.+++|.+-+++..|.++|+-++.+ +.++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 34466777777888888899999999999999999999999999888765 2224445655543
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| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.71 E-value=5.9 Score=29.98 Aligned_cols=119 Identities=8% Similarity=0.089 Sum_probs=71.5
Q ss_pred HHHHHHhccccchHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006624 93 RLVHQVLNIDVEINVKIQFFKWAGRRRNFEHNSTTYMALIRCLDETRMIGVMWKSIQDMVRSTCVMGPSVLSEIVNILGK 172 (638)
Q Consensus 93 ~~~~~vl~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (638)
.+|-+|++...+++.|+++-. +.|++=....|..-.+.+...|+|.+|-++.-...+ |.-.++.|.+..-.+-..
T Consensus 3 ~ivpyi~~~l~n~~la~~lA~----r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~ 77 (157)
T d1bpoa1 3 NIIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQ 77 (157)
T ss_dssp THHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCC
T ss_pred chHHHHHhccCCHHHHHHHHH----hcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCC
Confidence 467777777788888855433 556665667788888888899999988887755433 455566665554433344
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCHhHHHHH
Q 006624 173 AKMVNKALSIFYQIKSRKCKPTANTYNSMILMLMQEGYYEKIHEL 217 (638)
Q Consensus 173 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 217 (638)
.|+..--+..|..+.+.|- .|..--.-+++.-..+|+.+-...+
T Consensus 78 pGq~spLL~YF~~Ll~~~~-LN~~ESlEl~r~vL~q~r~~lve~W 121 (157)
T d1bpoa1 78 PGQTSPLLQYFGILLDQGQ-LNKYESLELCRPVLQQGRKQLLEKW 121 (157)
T ss_dssp TTSCCHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhcCC-CchHHhHHHHHHHHhcCcHHHHHHH
Confidence 4555555556665555542 2333333344444455554443333
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