Citrus Sinensis ID: 006630
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FH87 | 637 | Putative pentatricopeptid | yes | no | 0.942 | 0.943 | 0.657 | 0.0 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.894 | 0.894 | 0.679 | 0.0 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.722 | 0.891 | 0.330 | 8e-71 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.652 | 0.815 | 0.330 | 7e-70 | |
| Q9LZP3 | 599 | Pentatricopeptide repeat- | no | no | 0.677 | 0.721 | 0.311 | 1e-62 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | no | no | 0.677 | 0.721 | 0.308 | 1e-61 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | no | no | 0.677 | 0.722 | 0.308 | 2e-61 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.644 | 0.718 | 0.310 | 9e-61 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.625 | 0.667 | 0.312 | 6e-58 | |
| Q9SSR6 | 523 | Pentatricopeptide repeat- | no | no | 0.670 | 0.818 | 0.291 | 5e-56 |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/611 (65%), Positives = 501/611 (81%), Gaps = 10/611 (1%)
Query: 17 RFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEK 76
RF R + +E +N + LVCL+ K +N + ++EF+ DVEK
Sbjct: 34 RFDLIHRSFHVSRALEDNFRRSNGIG--LVCLE------KSHNDRTKNSKYDEFASDVEK 85
Query: 77 IFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
+RIL+KFHSR+PKLELAL SGV LRPGL ERV+NRCGDAGNLGYR+++WA+KQP Y H
Sbjct: 86 SYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCH 145
Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
S +VY++++K LSKMR+FGAVW L+EEMRKE PQLI E+FV+L++RFASA MVKKAIEV
Sbjct: 146 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 205
Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
LDEMPK+G EPDE+VFGCLLDALCK+ SVK+AAKLF++MR RF +LR+FTSLLYGWC+
Sbjct: 206 LDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRV 265
Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
GK++EAKYVLVQM +AGFEPDIV Y NLLSGYA GKM DA++LL++MRR+G +PNAN Y
Sbjct: 266 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY 325
Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
TVLIQALC++++MEEA + FVEMER CEADVVTYT L+SGFCK KID+CY +LD MI+
Sbjct: 326 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 385
Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
+G++P++LTY+HIM+AHEKKE EEC+ELM +MR+I PD+ YNVVIRLACKLGE+KE
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445
Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
AV +WNEME LSPG D+FV+M++G QGCL+EA ++FKEMV RGL S QYGTLK L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLL 505
Query: 497 LNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
LN++L+ +K+EMAKDVWSCI +KG CELNV +WTIWIH+LFS G+ KEACSYC++M++ D
Sbjct: 506 LNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMD 565
Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
MPQPDTFAKLM+GLKKLYNR+ A EITEKVR MAAER+++FKMYKRRG +DL EKAK +
Sbjct: 566 FMPQPDTFAKLMKGLKKLYNREFAGEITEKVRNMAAEREMSFKMYKRRGVQDLTEKAKSK 625
Query: 616 VDGRKRRARQR 626
D R+ + +QR
Sbjct: 626 QD-REGKKKQR 635
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Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/578 (67%), Positives = 486/578 (84%), Gaps = 7/578 (1%)
Query: 68 NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
+EF+ +VEKI+RIL+ HSR+PKLELAL SG+ LRPGL RV++RCGDAGNLGYR+++W
Sbjct: 61 DEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLW 120
Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
A+KQP Y HSY+V ++++ LSKMR+FGAVW L+EEMRK P+LI E+FV+LMRRFASA
Sbjct: 121 ATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASA 180
Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
MVKKA+EVLDEMPKYG EPDE+VFGCLLDALCKN SVKEA+K+F++MRE+F P+LR+FT
Sbjct: 181 NMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFT 240
Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
SLLYGWC+EGKL+EAK VLVQMK+AG EPDIVV+ NLLSGYA GKM DA++L+ +MR++
Sbjct: 241 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKR 300
Query: 308 GCDPNANSYTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
G +PN N YTVLIQALCR EK M+EA R FVEMER GCEAD+VTYT LISGFCK ID+
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 360
Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
Y +LD M ++G++P+Q+TY+ IM+AHEKKE+ EEC+EL+ +M++ GC PD+ YNVVIR
Sbjct: 361 GYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIR 420
Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
LACKLGE+KEAV +WNEMEA LSPG D+FV+M++GF QG LIEAC +FKEMV RG+ S
Sbjct: 421 LACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFS 480
Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIV--TKGCELNVYAWTIWIHSLFSNGHVKEA 544
APQYGTLK+LLN+L+R K+EMAKDVWSCI T CELNV AWTIWIH+L++ GHVKEA
Sbjct: 481 APQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEA 540
Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
CSYCLDMM+ D+MPQP+T+AKLM+GL KLYNR IAAEITEKV KMA+ER+++FKMYK++G
Sbjct: 541 CSYCLDMMEMDLMPQPNTYAKLMKGLNKLYNRTIAAEITEKVVKMASEREMSFKMYKKKG 600
Query: 605 ERDLKEKAKKQVDGRKRRA---RQRRWG-GGRSKAKIL 638
E DL EKAK + + ++ QR G G RS+AK L
Sbjct: 601 EEDLIEKAKPKGNKEGKKKGTDHQRYKGRGERSRAKAL 638
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 155/469 (33%), Positives = 260/469 (55%), Gaps = 8/469 (1%)
Query: 33 STATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLE 92
S+AT + N + + + C + + S +E DV + + + K P+L
Sbjct: 27 SSATVWVRFNMTIRIINRQSRFCCKSFLSARLYSSSEQVRDVADVAKNISKVLMSSPQLV 86
Query: 93 L--ALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSK 150
L AL SG+ + + E V+NR +AG L YR++ W+ KQ +Y HS Y +I+S +K
Sbjct: 87 LDSALDQSGLRVSQEVVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAK 146
Query: 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF 210
+R++ +W L+ MRK+K ++ E F I+MR++A A+ V +AI + M KY P+
Sbjct: 147 IRQYKLMWDLINAMRKKK--MLNVETFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLV 204
Query: 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270
F LL ALCK+ +V++A ++F+ MR+RF P + ++ LL GW KE L +A+ V +M
Sbjct: 205 AFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMI 264
Query: 271 DAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
DAG PDIV Y+ ++ + G++ +A +++ M C P Y+VL+ ++E
Sbjct: 265 DAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLE 324
Query: 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM 390
EA F+EMERSG +ADV + +LI FCK+ ++ Y +L M +G+ PN + +I+
Sbjct: 325 EAVDTFLEMERSGMKADVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKS-CNII 383
Query: 391 LAHE-KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449
L H ++ E +E ++ +M K+ C PD Y +VI++ C+ E++ A VW M +
Sbjct: 384 LRHLIERGEKDEAFDVFRKMIKV-CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGV 442
Query: 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQYGTLKALL 497
P +F V+++G + +AC +EM+ G+ S +G L+ LL
Sbjct: 443 FPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGIRPSGVTFGRLRQLL 491
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 240/430 (55%), Gaps = 14/430 (3%)
Query: 59 NTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG 118
++ +T S N+ S D E+I +IL KF K+E L + V L P L E V+ + +AG
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTD--SKVETLLNEASVKLSPALIEEVLKKLSNAG 108
Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
L + WA Q + H+ Y ALI+SL K+++F +W+L+++M+ +K L++ E F
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK--LLSKETFA 166
Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
++ RR+A AR VK+AI +M ++G + + F +LD L K+ +V +A K+FD+M++
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226
Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
RF+P ++ +T LL GW +E L+ V +MKD GFEPD+V Y +++ + + K +A
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286
Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
EM ++ C P+ + + LI L +K+ +A F + SG + TY L+
Sbjct: 287 IRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346
Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGC 414
+C S++++ Y+ +D M +G+ PN TY LH ++ ++ +E E + M C
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM------SC 400
Query: 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474
P VS Y +++R+ C L A+ +W+EM+ + PG F ++ + L EACE
Sbjct: 401 EPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACE 460
Query: 475 YFKEMVGRGL 484
YF EM+ G+
Sbjct: 461 YFNEMLDVGI 470
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 241 bits (615), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 136/437 (31%), Positives = 233/437 (53%), Gaps = 5/437 (1%)
Query: 51 KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
+E + +C+N +T S E S +VE++ +++ + + +E L + L L
Sbjct: 105 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 164
Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
V+ R A +R++ WA+++ + H Y +++ L+K R+F + +++EEM +
Sbjct: 165 VEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK 224
Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
L+T E F I M+ FA+A+ KKA+ + + M KY + CLLD+L + KE
Sbjct: 225 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282
Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
A LFD+++ERF P++ +T LL GWC+ L+EA + M D G +PDIV +N +L G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEG 342
Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
+ K +DA +L M+ KG PN SYT++I+ C+ ME A F +M SG + D
Sbjct: 343 LLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
YT LI+GF +K+D YE+L M ++G P+ TY ++ ++ E +
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYN 462
Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
+M + P + +N++++ + VW EM + P +S+ V++ G +G+G
Sbjct: 463 KMIQNEIEPSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEG 522
Query: 468 CLIEACEYFKEMVGRGL 484
EAC Y +EM+ +G+
Sbjct: 523 KSREACRYLEEMLDKGM 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (607), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 234/437 (53%), Gaps = 5/437 (1%)
Query: 51 KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
+E + +C+N +T S E S +VE++ +++ + + +E L + L L
Sbjct: 105 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 164
Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
V+ R A +R++ WA+++ + H+ Y +++ L+K R+F + +++EEM +
Sbjct: 165 VEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTK 224
Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
L+T E F I M+ FA+A+ KKA+ + + M KY + CLLD+L + KE
Sbjct: 225 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282
Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
A LFD+++ERF P++ +T LL GWC+ L+EA + M D G +PDIV +N +L G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 342
Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
+ K +DA +L M+ KG PN SYT++I+ C+ ME A F +M SG + D
Sbjct: 343 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
YT LI+GF +K+D YE+L M ++G P+ TY ++ ++ E +
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN 462
Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
+M + P + +N++++ + VW+EM + P +S+ V++ G + +G
Sbjct: 463 KMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEG 522
Query: 468 CLIEACEYFKEMVGRGL 484
EAC Y +EM+ +G+
Sbjct: 523 KSREACRYLEEMLDKGM 539
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (606), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 135/437 (30%), Positives = 233/437 (53%), Gaps = 5/437 (1%)
Query: 51 KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
+E + +C+N +T S E S +VE++ +++ + + +E L + L L
Sbjct: 104 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 163
Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
V+ R A +R++ WA+++ + H Y +++ L+K R+F + +++EEM +
Sbjct: 164 VEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK 223
Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
L+T E F I M+ FA+A+ KKA+ + + M KY + CLLD+L + KE
Sbjct: 224 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 281
Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
A LFD+++ERF P++ +T LL GWC+ L+EA + M D G +PDIV +N +L G
Sbjct: 282 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 341
Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
+ K +DA +L M+ KG PN SYT++I+ C+ ME A F +M SG + D
Sbjct: 342 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 401
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMG 407
YT LI+GF +K+D YE+L M ++G P+ TY ++ ++ E +
Sbjct: 402 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN 461
Query: 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG 467
+M + P + +N++++ + VW+EM + P +S+ V++ G + +G
Sbjct: 462 KMIQNEIEPSIHTFNMIMKSYFVARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEG 521
Query: 468 CLIEACEYFKEMVGRGL 484
EAC Y +EM+ +G+
Sbjct: 522 KSREACRYLEEMLDKGM 538
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/416 (31%), Positives = 220/416 (52%), Gaps = 5/416 (1%)
Query: 71 SHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASK 130
S DV KI +++K S +L L+ V L +++R + + +++WA K
Sbjct: 94 SEDVGKISKLVKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGK 153
Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
Q YV S Y ++I L KMRKF W L++EMRK P L+ ++ +I++R++ + V
Sbjct: 154 QQGYVRSVREYHSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDV 213
Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
KAI ++ E F LL ALC+ +V +A L ++++ + F +L
Sbjct: 214 GKAINTFHAYKRFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVL 273
Query: 251 YGWCKE-GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
GWC G EA+ V ++M + G + D+V Y++++S Y++ G + +L M+++
Sbjct: 274 NGWCNVIGSPREAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECI 333
Query: 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERS-GCEADVVTYTTLISGFCKSRKIDRCY 368
+P+ Y ++ AL + + EA ME G E +VVTY +LI CK+RK +
Sbjct: 334 EPDRKVYNAVVHALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAK 393
Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
++ D M+++G+ P TY M EE+ EL+ +MRK+GC P V Y ++IR
Sbjct: 394 QVFDEMLEKGLFPTIRTYHAFMRILRTGEEV---FELLAKMRKMGCEPTVETYIMLIRKL 450
Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484
C+ + + +W+EM+ ++ P S++VM+HG G + EA Y+KEM +G+
Sbjct: 451 CRWRDFDNVLLLWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGM 506
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 127/406 (31%), Positives = 218/406 (53%), Gaps = 7/406 (1%)
Query: 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDE 199
Y +I K + ++++ M P ++T + ++R + +K+A+EVLD
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRM-SVSPDVVT---YNTILRSLCDSGKLKQAMEVLDR 229
Query: 200 MPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGK 258
M + C PD + L++A C++S V A KL DEMR+R P + + L+ G CKEG+
Sbjct: 230 MLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGR 289
Query: 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318
L EA L M +G +P+++ +N +L G+ DA +LL +M RKG P+ ++ +
Sbjct: 290 LDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNI 349
Query: 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378
LI LCR + A +M + GC+ + ++Y L+ GFCK +K+DR E L+ M+ RG
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG 409
Query: 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438
P+ +TY ++ A K ++E+ VE++ ++ GC P + YN VI K G+ +A+
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469
Query: 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498
+ +EM A L P T ++ +V G +G + EA ++F E G+ P T +++
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI--RPNAVTFNSIML 527
Query: 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544
L ++++ + A D ++ +GC+ N ++TI I L G KEA
Sbjct: 528 GLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640, mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 129/442 (29%), Positives = 220/442 (49%), Gaps = 14/442 (3%)
Query: 67 HNEFSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRP----GLTERVINRCGDAGNLG 121
H+ S D V +I R+L R PK +L +H+ V P L E+V+ RC + G
Sbjct: 30 HDPPSPDLVNEISRVLSD--HRNPKDDL--EHTLVAYSPRVSSNLVEQVLKRCKNLGFPA 85
Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
+R+++WA + P++ HS + Y L++ L ++F +W + E R+ I+++VF I+
Sbjct: 86 HRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVF 145
Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFK 240
R ++ A + +A + M ++G +P LL +LC V A + F + +
Sbjct: 146 RAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIV 205
Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
PS + ++ L+ GW + A+ V +M + D++ YN LL + G + +++
Sbjct: 206 PSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKM 265
Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
+EM G P+A S+ + I A C + A + M+R +V T+ +I CK
Sbjct: 266 FQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCK 325
Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
+ K+D Y +LD MIQ+G P+ TY IM H E+ +L+ M + C+PD
Sbjct: 326 NEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHT 385
Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEM 479
YN+V++L ++G A +W M P ++ VM+HG + +G L EAC YF+ M
Sbjct: 386 YNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMM 445
Query: 480 VGRGLLSAPQYGTLKALLNSLL 501
+ G+ P Y T +L + L
Sbjct: 446 IDEGI---PPYSTTVEMLRNRL 464
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | ||||||
| 359496995 | 622 | PREDICTED: putative pentatricopeptide re | 0.921 | 0.945 | 0.741 | 0.0 | |
| 449463822 | 641 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.985 | 0.686 | 0.0 | |
| 356557306 | 654 | PREDICTED: putative pentatricopeptide re | 0.948 | 0.925 | 0.728 | 0.0 | |
| 147767159 | 655 | hypothetical protein VITISV_021787 [Viti | 0.847 | 0.825 | 0.787 | 0.0 | |
| 449494638 | 664 | PREDICTED: pentatricopeptide repeat-cont | 0.907 | 0.871 | 0.742 | 0.0 | |
| 356547370 | 628 | PREDICTED: putative pentatricopeptide re | 0.968 | 0.984 | 0.716 | 0.0 | |
| 224068054 | 602 | predicted protein [Populus trichocarpa] | 0.874 | 0.926 | 0.774 | 0.0 | |
| 255579531 | 596 | pentatricopeptide repeat-containing prot | 0.907 | 0.971 | 0.710 | 0.0 | |
| 15239161 | 637 | pentatricopeptide repeat-containing prot | 0.942 | 0.943 | 0.657 | 0.0 | |
| 297819626 | 1188 | pentatricopeptide repeat-containing prot | 0.855 | 0.459 | 0.699 | 0.0 |
| >gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/596 (74%), Positives = 511/596 (85%), Gaps = 8/596 (1%)
Query: 24 PNTTTSHVESTATTTNQLNSN--LVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRIL 81
PN S+ T ++ LV L++ ++C + D EFS DVEK++RIL
Sbjct: 12 PNHRLSNFGDKNCTISERRGGFGLVRLESNRENCTYDQNYD------EFSADVEKVYRIL 65
Query: 82 KKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY 141
+KFHSR+PKLELALQ SGV +R GLTERV+NRCGDAGNLGYR+++WASKQP Y HSY+VY
Sbjct: 66 RKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRHSYEVY 125
Query: 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
+A+IK L KMR+FGAVWAL+EEMR+E PQ ++ VFV+LMRRFASARMVKKAIEVLDEMP
Sbjct: 126 KAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEVLDEMP 185
Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
KYGCEPDE VFGCLLDALCKN SVKEAA LF++MR RF P+L+HFTSLLYGWC+EGKL+E
Sbjct: 186 KYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCREGKLME 245
Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
AKYVLVQ+++AGFEPDIVVYNNLL+GYA GKM DA++LLKEMRRK C+PN S+T LIQ
Sbjct: 246 AKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSFTTLIQ 305
Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
ALC +KMEEA R F EM+ GC AD VTYTTLISGFCK KI + YE+LD+MIQ+G +P
Sbjct: 306 ALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQQGHIP 365
Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
N +TYLHIM AHEKKEELEEC+ELM EMRKIGC PD++ YN+VIRLACKLGE+KE V VW
Sbjct: 366 NPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKEGVRVW 425
Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
NEMEA LSPG D+FV+M+HGFL Q CL+EACE+FKEMVGRGLLSAPQYGTLK LLNSLL
Sbjct: 426 NEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKELLNSLL 485
Query: 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561
RA+K+EM+KDVWSCI+TKGC+LNVYAWTIWIH+LFSNGHVKEACSYCLDMMDA VMPQPD
Sbjct: 486 RAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGVMPQPD 545
Query: 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
TFAKLMRGL+KLYNRQIAAEITEKVRKMAAER++TFKMYKRRGER+LKEK K+ D
Sbjct: 546 TFAKLMRGLRKLYNRQIAAEITEKVRKMAAEREMTFKMYKRRGERNLKEKIKEAKD 601
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49730-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/647 (68%), Positives = 535/647 (82%), Gaps = 15/647 (2%)
Query: 1 MQRSSSKALSLLTKHRRFSFAP------RPNTTTSHVESTAT---TTNQLNSNLVCLKTK 51
M R + + + +K S +P +P+ + S + S + TT + + LKT
Sbjct: 1 MHRFYHRTIHVFSKQSSKSNSPLIFLPKKPHLSLSLISSQTSPNGTTQRGGFGPIHLKTT 60
Query: 52 EDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVI 111
+ + D EFS DVEK++RIL+KFH+R+PKLELALQ SGV++R GL ERV+
Sbjct: 61 PHESAHDRDAD------EFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVL 114
Query: 112 NRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL 171
+RCGDAGNLGYR+++WASKQP Y HSY+VY+A+IK+L KMR+FGAVWAL+EEMRKE P +
Sbjct: 115 SRCGDAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYM 174
Query: 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKL 231
+T EVF++LMRRFAS RMVKKA+EVLDEMPKYGCEPDE+VFGCLLDALCKN SVKEAA L
Sbjct: 175 LTPEVFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASL 234
Query: 232 FDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291
F++MR RF P+LRHFTSLLYGWC+EGK++EAK+VLVQ+K+AGFEPDIVVYNNLL GYAQ
Sbjct: 235 FEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQA 294
Query: 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351
GKM DAF+LL EM++ C PNA S+T+LIQ+ C+ EKM+EA R F EM+ SGCEADVVTY
Sbjct: 295 GKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTY 354
Query: 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411
TTLISGFCK D+ YEILD MIQ+G P+QL+YL IM+AHEKKEELEEC+EL+ EMRK
Sbjct: 355 TTLISGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRK 414
Query: 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
IGCVPD++ YN +IRL CKLG+LKEAV +W EM+A L+PG D++++MVHGFL QGCL+E
Sbjct: 415 IGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVE 474
Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531
AC+YFKEMV RGLLSAPQYGTLK L N+LLRA+K+EMAK++WSC+ TKGCELNV AWTIW
Sbjct: 475 ACDYFKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIW 534
Query: 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591
IH+LFSNGHVKEACSYCLDMMDAD+MPQPDTFAKLMRGLKKL++RQ+A EITEKVRKMAA
Sbjct: 535 IHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKKLFHRQLAVEITEKVRKMAA 594
Query: 592 ERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRSKAKIL 638
+RQITFKMYKRRGERDLKEK K ++DGRKRRAR+R W G K K L
Sbjct: 595 DRQITFKMYKRRGERDLKEKIKAKIDGRKRRARRRGWSGMHKKTKTL 641
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557306|ref|XP_003546958.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 924 bits (2388), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/614 (72%), Positives = 525/614 (85%), Gaps = 9/614 (1%)
Query: 22 PRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRIL 81
P P S ++ TNQ ++ +E N TD H +H+EF+ DVEK++RIL
Sbjct: 48 PPPPHCNSTFDNHGCLTNQFG----LIRLQEISI---NHTDDH-THDEFASDVEKVYRIL 99
Query: 82 KKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVY 141
+K+HSR+PKLELAL+ SGVV+RPGLTERV++RCGDAGNL YR+Y WASKQ + +D Y
Sbjct: 100 RKYHSRVPKLELALRESGVVVRPGLTERVLSRCGDAGNLAYRFYSWASKQSGHRLDHDAY 159
Query: 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201
+A+IK LS+MR+FGAVWAL+EEMR+E P LIT +VFVILMRRFASARMV KA+EVLDEMP
Sbjct: 160 KAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASARMVHKAVEVLDEMP 219
Query: 202 KYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261
KYGCEPDE+VFGCLLDALCKN SVKEAA LF++MR R+KPS++HFTSLLYGWCKEGKL+E
Sbjct: 220 KYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRYRWKPSVKHFTSLLYGWCKEGKLME 279
Query: 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321
AK+VLVQMKD G EPDIVVYNNLL GYAQ GKM DA++LLKEMRRK C+PNA SYTVLIQ
Sbjct: 280 AKHVLVQMKDMGIEPDIVVYNNLLGGYAQAGKMGDAYDLLKEMRRKRCEPNATSYTVLIQ 339
Query: 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
+LC+ E++EEA R FVEM+ +GC+ADVVTY+TLISGFCK KI R YE+LD MIQ+G P
Sbjct: 340 SLCKHERLEEATRLFVEMQTNGCQADVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHFP 399
Query: 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVW 441
NQ+ Y HIMLAHEKKEELEEC EL+ EM+KIGC PD+S YN VIRLACKLGE+KE + +W
Sbjct: 400 NQVIYQHIMLAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLACKLGEVKEGIQLW 459
Query: 442 NEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501
NEME++ LSPG D+FV+M++GFL QGCL+EACEYFKEMVGRGL +APQYGTLK L+NSLL
Sbjct: 460 NEMESSGLSPGMDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFTAPQYGTLKELMNSLL 519
Query: 502 RAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560
RA+K+EMAKD W+CI +KGC+LNV AWTIWIH+LFS GHVKEACS+C+DMMD D+MP P
Sbjct: 520 RAEKLEMAKDAWNCITASKGCQLNVSAWTIWIHALFSKGHVKEACSFCIDMMDKDLMPNP 579
Query: 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRK 620
DTFAKLM GLKKLYNRQ AAEITEKVRKMAA+RQITFKMYKRRGERDLKEKAK++ DGRK
Sbjct: 580 DTFAKLMHGLKKLYNRQFAAEITEKVRKMAADRQITFKMYKRRGERDLKEKAKEKKDGRK 639
Query: 621 RRARQRRWGGGRSK 634
RRARQR+WGGGR K
Sbjct: 640 RRARQRQWGGGRQK 653
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2382), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/541 (78%), Positives = 487/541 (90%)
Query: 77 IFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
++RIL+KFHSR+PKLELALQ SGV +R GLTERV+NRCGDAGNLGYR+++WASKQP Y H
Sbjct: 94 VYRILRKFHSRVPKLELALQESGVAVRSGLTERVLNRCGDAGNLGYRFFVWASKQPGYRH 153
Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
SY+VY+A+IK L KMR+FGAVWAL+EEMR+E PQ ++ VFV+LMRRFASARMVKKAIEV
Sbjct: 154 SYEVYKAMIKILGKMRQFGAVWALIEEMRRENPQFVSPYVFVVLMRRFASARMVKKAIEV 213
Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
LDEMPKYGCEPDE VFGCLLDALCKN SVKEAA LF++MR RF P+L+HFTSLLYGWC+E
Sbjct: 214 LDEMPKYGCEPDEHVFGCLLDALCKNGSVKEAASLFEDMRIRFTPTLKHFTSLLYGWCRE 273
Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
GKL+EAKYVLVQ+++AGFEPDIVVYNNLL+GYA GKM DA++LLKEMRRK C+PN S+
Sbjct: 274 GKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEMRRKECEPNVMSF 333
Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
T LIQALC +KMEEA R F EM+ GC AD VTYTTLISGFCK KI + YE+LD+MIQ
Sbjct: 334 TTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYELLDNMIQ 393
Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
+G +PN +TYLHIM AHEKKEELEEC+ELM EMRKIGC PD++ YN+VIRLACKLGE+KE
Sbjct: 394 QGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLACKLGEIKE 453
Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
V VWNEMEA LSPG D+FV+M+HGFL Q CL+EACE+FKEMVGRGLLSAPQYGTLK L
Sbjct: 454 GVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMVGRGLLSAPQYGTLKEL 513
Query: 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556
LNSLLRA+K+EM+KDVWSCI+TKGC+LNVYAWTIWIH+LFSNGHVKEACSYCLDMMDA V
Sbjct: 514 LNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYCLDMMDAGV 573
Query: 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQV 616
MPQPDTFAKLMRGL+KLYNRQIAAEITEKVRKMAAER++TFKMYKRRGER+LKEK K+
Sbjct: 574 MPQPDTFAKLMRGLRKLYNRQIAAEITEKVRKMAAEREMTFKMYKRRGERNLKEKIKEAK 633
Query: 617 D 617
D
Sbjct: 634 D 634
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49730-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 921 bits (2380), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/583 (74%), Positives = 512/583 (87%), Gaps = 4/583 (0%)
Query: 60 TTDTHGSHN----EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCG 115
TT +H+ EFS DVEK++RIL+KFH+R+PKLELALQ SGV++R GL ERV++RCG
Sbjct: 82 TTPHESAHDRDADEFSVDVEKVYRILRKFHTRVPKLELALQESGVIMRSGLPERVLSRCG 141
Query: 116 DAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTE 175
DAGNLGYR+++WASKQP Y HSY+VY+A+IK+L KMR+FGAVWAL+EEMRKE P ++T E
Sbjct: 142 DAGNLGYRFFVWASKQPGYRHSYEVYKAMIKTLGKMRQFGAVWALIEEMRKENPYMLTPE 201
Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235
VF++LMRRFAS RMVKKA+EVLDEMPKYGCEPDE+VFGCLLDALCKN SVKEAA LF++M
Sbjct: 202 VFIVLMRRFASVRMVKKAVEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDM 261
Query: 236 RERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295
R RF P+LRHFTSLLYGWC+EGK++EAK+VLVQ+K+AGFEPDIVVYNNLL GYAQ GKM
Sbjct: 262 RVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMR 321
Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
DAF+LL EM++ C PNA S+T+LIQ+ C+ EKM+EA R F EM+ SGCEADVVTYTTLI
Sbjct: 322 DAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLI 381
Query: 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCV 415
SGFCK D+ YEILD MIQ+G P+QL+YL IM+AHEKKEELEEC+EL+ EMRKIGCV
Sbjct: 382 SGFCKWGNTDKAYEILDDMIQKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCV 441
Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475
PD++ YN +IRL CKLG+LKEAV +W EM+A L+PG D++++MVHGFL QGCL+EAC+Y
Sbjct: 442 PDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILMVHGFLSQGCLVEACDY 501
Query: 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
FKEMV RGLLSAPQYGTLK L N+LLRA+K+EMAK++WSC+ TKGCELNV AWTIWIH+L
Sbjct: 502 FKEMVERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTTKGCELNVSAWTIWIHAL 561
Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595
FSNGHVKEACSYCLDMMDAD+MPQPDTFAKLMRGLKKL++RQ+A EITEKVRKMAA+RQI
Sbjct: 562 FSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKKLFHRQLAVEITEKVRKMAADRQI 621
Query: 596 TFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRSKAKIL 638
TFKMYKRRGERDLKEK K ++DGRKRRAR+R W G K K L
Sbjct: 622 TFKMYKRRGERDLKEKIKAKIDGRKRRARRRGWSGMHKKTKTL 664
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 919 bits (2376), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/627 (71%), Positives = 531/627 (84%), Gaps = 9/627 (1%)
Query: 9 LSLLTKHRRFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHN 68
LS+ RRFS N H +ST N L + ++ +E N+T D +H+
Sbjct: 9 LSIRRDFRRFS---SENLPPPHFKST-FDNNALTNQFGFIRLQE--ISINHTDDQ--THD 60
Query: 69 EFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWA 128
EF+ DVEK++RIL+K+HSR+PKLELAL+ SGVV+RPGLTERV+NRCGDAGNL YR+Y WA
Sbjct: 61 EFASDVEKVYRILRKYHSRVPKLELALRESGVVVRPGLTERVLNRCGDAGNLAYRFYSWA 120
Query: 129 SKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR 188
SKQ + +D Y+A+IK LS+MR+FGAVWAL+EEMR+E P LIT +VFVILMRRFASAR
Sbjct: 121 SKQSGHRLDHDAYKAMIKVLSRMRQFGAVWALIEEMRQENPHLITPQVFVILMRRFASAR 180
Query: 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248
MV KA++VLDEMP YGCEPDE+VFGCLLDAL KN SVKEAA LF+E+R R+KPS++HFTS
Sbjct: 181 MVHKAVQVLDEMPNYGCEPDEYVFGCLLDALRKNGSVKEAASLFEELRYRWKPSVKHFTS 240
Query: 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
LLYGWCKEGKL+EAK+VLVQMKDAG EPDIVVYNNLL GYAQ KM DA++LLKEMRRKG
Sbjct: 241 LLYGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEMRRKG 300
Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368
C+PNA SYTVLIQ+LC+ E++EEA R FVEM+R+GC+AD+VTY+TLISGFCK KI R Y
Sbjct: 301 CEPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGY 360
Query: 369 EILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428
E+LD MIQ+G PNQ+ Y HIM+AHEKKEELEEC EL+ EM+KIGC PD+S YN VIRLA
Sbjct: 361 ELLDEMIQQGHFPNQVIYQHIMVAHEKKEELEECKELVNEMQKIGCAPDLSIYNTVIRLA 420
Query: 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488
CKLGE+KE V +WNEME++ LSP D+FV+M++GFL QGCL+EACEYFKEMVGRGL +AP
Sbjct: 421 CKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFAAP 480
Query: 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
QYGTLK L+NSLLRA+K+EMAKD W+CI +KGC+LNV AWTIWIH+LFS GHVKEACS+
Sbjct: 481 QYGTLKELMNSLLRAEKLEMAKDAWNCITASKGCQLNVSAWTIWIHALFSKGHVKEACSF 540
Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERD 607
C+ MMD D+MPQPDTFAKLMRGLKKLYNR+ AAEITEKVRKMAA+R+ITFKMYKRRGERD
Sbjct: 541 CIAMMDKDLMPQPDTFAKLMRGLKKLYNREFAAEITEKVRKMAADRKITFKMYKRRGERD 600
Query: 608 LKEKAKKQVDGRKRRARQRRWGGGRSK 634
LKEKAK++ DGRKRRARQ RWGGGR K
Sbjct: 601 LKEKAKEKKDGRKRRARQCRWGGGRQK 627
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa] gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/558 (77%), Positives = 503/558 (90%)
Query: 68 NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
+EF+ DVEK++R+L+KFHSR+PKLELALQ SGVVLR GLTERV+NRCGDAG L Y++++W
Sbjct: 45 DEFASDVEKVYRLLRKFHSRVPKLELALQESGVVLRNGLTERVLNRCGDAGILAYKFFVW 104
Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
ASKQP Y H Y+ Y+A+IK LSKM++FGAVWAL+EEMR++ LIT+EVFV++MRRFAS+
Sbjct: 105 ASKQPCYRHCYENYKAMIKVLSKMKQFGAVWALLEEMRRDNSVLITSEVFVVVMRRFASS 164
Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
RMV KAIEVLDEMPKYGCEPDE+VFGCLLDALCKN SVKEAA LF++MR RF PSL+HFT
Sbjct: 165 RMVNKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMRVRFSPSLKHFT 224
Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
LLYGWCKEGKL+EAK+VLVQM++AGFEPDIVVYNNLLSGYA GKM DAF+LLKE+RRK
Sbjct: 225 CLLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKEIRRK 284
Query: 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367
GCDPNA SYT+LIQALC EKM+EA R FVEMERSGC+ADVVTYT L+SGFCK R ID+
Sbjct: 285 GCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKG 344
Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
Y+IL SMIQ+G +PNQLTYLH+MLAHEKKEELEEC ELMGEM+KIGC+PD+S YNVVIRL
Sbjct: 345 YQILQSMIQKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPDLSIYNVVIRL 404
Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
ACKLGE+ V+ WNEME + LSPG D+FV+M++GFLG G L+EAC+YFKEMV RGLLS+
Sbjct: 405 ACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHGYLVEACQYFKEMVERGLLSS 464
Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSY 547
QYG LK LLN+LLR +K+E+AKD+WSCIVTKGCELNV +WTIWIH+LFSNGHVKEACSY
Sbjct: 465 RQYGILKDLLNALLRGEKLELAKDLWSCIVTKGCELNVDSWTIWIHALFSNGHVKEACSY 524
Query: 548 CLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERD 607
CLDMMDAD+MP+P+TFAKLMRGL+KLYNRQ AAEITEKVRKMAA+R +TFKMYKRRGERD
Sbjct: 525 CLDMMDADLMPKPETFAKLMRGLRKLYNRQFAAEITEKVRKMAADRHVTFKMYKRRGERD 584
Query: 608 LKEKAKKQVDGRKRRARQ 625
L EKAK + DGRKRRAR+
Sbjct: 585 LIEKAKAKKDGRKRRARR 602
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 871 bits (2251), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/597 (71%), Positives = 504/597 (84%), Gaps = 18/597 (3%)
Query: 1 MQRSSSKALSLLTKHR-RFSFAPRPNTTTSHVESTATTTNQLNSNL------VCLKTKED 53
MQR SSK +SLL KH RF+ + N L++NL VCLKT+E
Sbjct: 1 MQRLSSKTISLLNKHCCRFNLI---HVQLYQKGQEPIDRNPLSNNLRNGFGVVCLKTQE- 56
Query: 54 DCKCNNTTDTHGSH---NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERV 110
NNT+D S +EF+ DVEK++RIL+ FHSR+PKLELALQ SGV +R GLTERV
Sbjct: 57 ----NNTSDRDNSSSKVDEFAKDVEKVYRILRNFHSRVPKLELALQESGVTMRAGLTERV 112
Query: 111 INRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ 170
+NRCGDAGNLGYR+++WASKQP Y HSY+ Y+A++K SKMR+FGAVWAL+EEMRK+
Sbjct: 113 LNRCGDAGNLGYRFFVWASKQPGYRHSYENYKAMVKIFSKMRQFGAVWALLEEMRKDNSV 172
Query: 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230
LIT+E+F++L+RRFASAR+V+KAIEVLDEMPKYGCEPDE+VFGCLLDALCKN SVK+AA
Sbjct: 173 LITSELFIVLIRRFASARLVEKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKQAAS 232
Query: 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
LF++MR RF PSLRHFTSLLYGWC+EGKL+EAK+VLVQM++AGFEPDIVV+NNLLS Y+
Sbjct: 233 LFEDMRVRFSPSLRHFTSLLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSM 292
Query: 291 MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350
GKMTDAF+LLKEM RKGC+PNANSYT++IQA C EKM+EA R FVEMER+GCEADVVT
Sbjct: 293 AGKMTDAFDLLKEMVRKGCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVT 352
Query: 351 YTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410
YT LISGFCK KI+R Y+ILD+M Q+G +PNQLTYL I+LAHEKKEELEEC+EL+ MR
Sbjct: 353 YTALISGFCKWGKINRGYQILDAMKQKGHMPNQLTYLRILLAHEKKEELEECLELIESMR 412
Query: 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI 470
+GCVPD+S YNVVIRLACKLGE+K+ V +WNEMEA+ SP D+FV+M+HGFLGQGCL+
Sbjct: 413 MVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGCLV 472
Query: 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTI 530
EACEYFKEM+GRGLL+ PQYG LK LLN+LLR +K+ MAKDVWSCIVTKGCELN AWTI
Sbjct: 473 EACEYFKEMIGRGLLTTPQYGILKELLNALLRGEKLGMAKDVWSCIVTKGCELNADAWTI 532
Query: 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587
WIHSLFSNGHVKEACSYCLDMM+AD+MP+P+TFAKLMRGL+KLYNR+ AAEITEK++
Sbjct: 533 WIHSLFSNGHVKEACSYCLDMMEADIMPKPETFAKLMRGLRKLYNREFAAEITEKIK 589
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At5g65820 gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana] gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/611 (65%), Positives = 501/611 (81%), Gaps = 10/611 (1%)
Query: 17 RFSFAPRPNTTTSHVESTATTTNQLNSNLVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEK 76
RF R + +E +N + LVCL+ K +N + ++EF+ DVEK
Sbjct: 34 RFDLIHRSFHVSRALEDNFRRSNGIG--LVCLE------KSHNDRTKNSKYDEFASDVEK 85
Query: 77 IFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
+RIL+KFHSR+PKLELAL SGV LRPGL ERV+NRCGDAGNLGYR+++WA+KQP Y H
Sbjct: 86 SYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCH 145
Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196
S +VY++++K LSKMR+FGAVW L+EEMRKE PQLI E+FV+L++RFASA MVKKAIEV
Sbjct: 146 SIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEV 205
Query: 197 LDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256
LDEMPK+G EPDE+VFGCLLDALCK+ SVK+AAKLF++MR RF +LR+FTSLLYGWC+
Sbjct: 206 LDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRV 265
Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316
GK++EAKYVLVQM +AGFEPDIV Y NLLSGYA GKM DA++LL++MRR+G +PNAN Y
Sbjct: 266 GKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCY 325
Query: 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376
TVLIQALC++++MEEA + FVEMER CEADVVTYT L+SGFCK KID+CY +LD MI+
Sbjct: 326 TVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLDDMIK 385
Query: 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436
+G++P++LTY+HIM+AHEKKE EEC+ELM +MR+I PD+ YNVVIRLACKLGE+KE
Sbjct: 386 KGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVKE 445
Query: 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496
AV +WNEME LSPG D+FV+M++G QGCL+EA ++FKEMV RGL S QYGTLK L
Sbjct: 446 AVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVSQYGTLKLL 505
Query: 497 LNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555
LN++L+ +K+EMAKDVWSCI +KG CELNV +WTIWIH+LFS G+ KEACSYC++M++ D
Sbjct: 506 LNTVLKDKKLEMAKDVWSCITSKGACELNVLSWTIWIHALFSKGYEKEACSYCIEMIEMD 565
Query: 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615
MPQPDTFAKLM+GLKKLYNR+ A EITEKVR MAAER+++FKMYKRRG +DL EKAK +
Sbjct: 566 FMPQPDTFAKLMKGLKKLYNREFAGEITEKVRNMAAEREMSFKMYKRRGVQDLTEKAKSK 625
Query: 616 VDGRKRRARQR 626
D R+ + +QR
Sbjct: 626 QD-REGKKKQR 635
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 840 bits (2169), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/549 (69%), Positives = 471/549 (85%), Gaps = 3/549 (0%)
Query: 68 NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
+EF+ DVEKI+RIL+ +HSR+PKLEL+L SG+ LRPGL RV++RCGDAGNLGYR+++W
Sbjct: 64 DEFAGDVEKIYRILRNYHSRVPKLELSLNESGIDLRPGLIVRVLSRCGDAGNLGYRFFLW 123
Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
A+KQP Y HSY+V ++++K LSKMR+FGAVW L+EEMRKE P+LI E+FV+L+RRFASA
Sbjct: 124 ATKQPGYCHSYEVCKSMVKILSKMRQFGAVWGLIEEMRKENPELIEPELFVVLIRRFASA 183
Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
MVKKA+EVLDEMPKYG EPDE+VFGCLLDALCKN SVK+A+K+F++MRE+ P+LR+FT
Sbjct: 184 NMVKKAVEVLDEMPKYGFEPDEYVFGCLLDALCKNGSVKDASKVFEDMREKIPPNLRYFT 243
Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
SLLYGWC+EGKL+EAK VLVQMK+AG EPDIVV+ NLLSGYA GKM DA++LL +MR++
Sbjct: 244 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLLNDMRKR 303
Query: 308 GCDPNANSYTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
G +PNAN YTVLIQALCR EK M+EA R FVEMER GCEAD+VTYT LISGFCK ID+
Sbjct: 304 GYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 363
Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426
Y +LD M ++G++P+Q+TY+ I++AHEKKE+ EEC+EL+ +M++IGC PD+ YNVVIR
Sbjct: 364 GYSVLDDMRKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHPDLLIYNVVIR 423
Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
LAC E+KEAV +WNEMEA LSPG D FV+M++GF QG LIEAC +FKEMV RG+ S
Sbjct: 424 LACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMVSRGIFS 483
Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIV--TKGCELNVYAWTIWIHSLFSNGHVKEA 544
APQYGTLK+LLN+LLR K+EMAKDVWSCI T CELNV AWTIWIH+LF+ GHVKEA
Sbjct: 484 APQYGTLKSLLNTLLRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALFAKGHVKEA 543
Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
CSYCLDMM+ D+MPQP+T+ KLM+GL KLYNR IAAEITEKV KMA+ER+++FKMYK+RG
Sbjct: 544 CSYCLDMMEMDLMPQPNTYVKLMKGLNKLYNRTIAAEITEKVMKMASEREMSFKMYKKRG 603
Query: 605 ERDLKEKAK 613
E DL EKAK
Sbjct: 604 EEDLIEKAK 612
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 638 | ||||||
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.888 | 0.890 | 0.667 | 1.8e-213 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.855 | 0.855 | 0.681 | 1.3e-211 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.691 | 0.864 | 0.324 | 2.8e-66 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.673 | 0.717 | 0.312 | 4.5e-59 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.670 | 0.714 | 0.312 | 2.5e-58 | |
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.670 | 0.715 | 0.312 | 3.2e-58 | |
| TAIR|locus:2094394 | 562 | AT3G22670 [Arabidopsis thalian | 0.697 | 0.791 | 0.280 | 1.3e-54 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.670 | 0.818 | 0.287 | 2.4e-51 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.644 | 0.687 | 0.296 | 4e-51 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.650 | 0.772 | 0.262 | 5.2e-49 |
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2063 (731.3 bits), Expect = 1.8e-213, P = 1.8e-213
Identities = 383/574 (66%), Positives = 473/574 (82%)
Query: 45 LVCLKTKEDDCKCNNTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRP 104
LVCL+ K +N + ++EF+ DVEK +RIL+KFHSR+PKLELAL SGV LRP
Sbjct: 60 LVCLE------KSHNDRTKNSKYDEFASDVEKSYRILRKFHSRVPKLELALNESGVELRP 113
Query: 105 GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEM 164
GL ERV+NRCGDAGNLGYR+++WA+KQP Y HS +VY++++K LSKMR+FGAVW L+EEM
Sbjct: 114 GLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEM 173
Query: 165 RKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224
RKE PQLI E+FV+L++RFASA MVKKAIEVLDEMPK+G EPDE+VFGCLLDALCK+ S
Sbjct: 174 RKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYVFGCLLDALCKHGS 233
Query: 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
VK+AAKLF++MR RF +LR+FTSLLYGWC+ GK++EAKYVLVQM +AGFEPDIV Y NL
Sbjct: 234 VKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNL 293
Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344
LSGYA GKM DA++LL++MRR+G +PNAN YTVLIQALC++++MEEA + FVEMER C
Sbjct: 294 LSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYEC 353
Query: 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHXXXXXXXXXXX 404
EADVVTYT L+SGFCK KID+CY +LD MI++G++P++LTY+HIM+AH
Sbjct: 354 EADVVTYTALVSGFCKWGKIDKCYIVLDDMIKKGLMPSELTYMHIMVAHEKKESFEECLE 413
Query: 405 XXXXXRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464
R+I PD+ YNVVIRLACKLGE+KEAV +WNEME LSPG D+FV+M++G
Sbjct: 414 LMEKMRQIEYHPDIGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLA 473
Query: 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG-CEL 523
QGCL+EA ++FKEMV RGL S QYGTLK LLN++L+ +K+EMAKDVWSCI +KG CEL
Sbjct: 474 SQGCLLEASDHFKEMVTRGLFSVSQYGTLKLLLNTVLKDKKLEMAKDVWSCITSKGACEL 533
Query: 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583
NV +WTIWIH+LFS G+ KEACSYC++M++ D MPQPDTFAKLM+GLKKLYNR+ A EIT
Sbjct: 534 NVLSWTIWIHALFSKGYEKEACSYCIEMIEMDFMPQPDTFAKLMKGLKKLYNREFAGEIT 593
Query: 584 EKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617
EKVR MAAER+++FKMYKRRG +DL EKAK + D
Sbjct: 594 EKVRNMAAEREMSFKMYKRRGVQDLTEKAKSKQD 627
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2025 (717.9 bits), Expect = 1.3e-211, Sum P(2) = 1.3e-211
Identities = 374/549 (68%), Positives = 458/549 (83%)
Query: 68 NEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMW 127
+EF+ +VEKI+RIL+ HSR+PKLELAL SG+ LRPGL RV++RCGDAGNLGYR+++W
Sbjct: 61 DEFAGEVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLW 120
Query: 128 ASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASA 187
A+KQP Y HSY+V ++++ LSKMR+FGAVW L+EEMRK P+LI E+FV+LMRRFASA
Sbjct: 121 ATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASA 180
Query: 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247
MVKKA+EVLDEMPKYG EPDE+VFGCLLDALCKN SVKEA+K+F++MRE+F P+LR+FT
Sbjct: 181 NMVKKAVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFT 240
Query: 248 SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307
SLLYGWC+EGKL+EAK VLVQMK+AG EPDIVV+ NLLSGYA GKM DA++L+ +MR++
Sbjct: 241 SLLYGWCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKR 300
Query: 308 GCDPNANSYTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366
G +PN N YTVLIQALCR EK M+EA R FVEMER GCEAD+VTYT LISGFCK ID+
Sbjct: 301 GFEPNVNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDK 360
Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHXXXXXXXXXXXXXXXXRKIGCVPDVSNYNVVIR 426
Y +LD M ++G++P+Q+TY+ IM+AH ++ GC PD+ YNVVIR
Sbjct: 361 GYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIR 420
Query: 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS 486
LACKLGE+KEAV +WNEMEA LSPG D+FV+M++GF QG LIEAC +FKEMV RG+ S
Sbjct: 421 LACKLGEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFS 480
Query: 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK--GCELNVYAWTIWIHSLFSNGHVKEA 544
APQYGTLK+LLN+L+R K+EMAKDVWSCI K CELNV AWTIWIH+L++ GHVKEA
Sbjct: 481 APQYGTLKSLLNNLVRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALYAKGHVKEA 540
Query: 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRG 604
CSYCLDMM+ D+MPQP+T+AKLM+GL KLYNR IAAEITEKV KMA+ER+++FKMYK++G
Sbjct: 541 CSYCLDMMEMDLMPQPNTYAKLMKGLNKLYNRTIAAEITEKVVKMASEREMSFKMYKKKG 600
Query: 605 ERDLKEKAK 613
E DL EKAK
Sbjct: 601 EEDLIEKAK 609
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 674 (242.3 bits), Expect = 2.8e-66, P = 2.8e-66
Identities = 146/450 (32%), Positives = 242/450 (53%)
Query: 59 NTTDTHGSHNEFSHDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAG 118
++ +T S N+ S D E+I +IL KF K+E L + V L P L E V+ + +AG
Sbjct: 51 SSVETQVSANDASQDAERICKILTKFTDS--KVETLLNEASVKLSPALIEEVLKKLSNAG 108
Query: 119 NLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV 178
L + WA Q + H+ Y ALI+SL K+++F +W+L+++M+ +K L++ E F
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKK--LLSKETFA 166
Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE- 237
++ RR+A AR VK+AI +M ++G + + F +LD L K+ +V +A K+FD+M++
Sbjct: 167 LISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKK 226
Query: 238 RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297
RF+P ++ +T LL GW +E L+ V +MKD GFEPD+V Y +++ + + K +A
Sbjct: 227 RFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEA 286
Query: 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357
EM ++ C P+ + + LI L +K+ +A F + SG + TY L+
Sbjct: 287 IRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGA 346
Query: 358 FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHXXXXXXXXXXXXXXXXRKIGCVPD 417
+C S++++ Y+ +D M +G+ PN TY I+L H + + C P
Sbjct: 347 YCWSQRMEDAYKTVDEMRLKGVGPNARTY-DIILHHLIRMQRSKEAYEVY--QTMSCEPT 403
Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
VS Y +++R+ C L A+ +W+EM+ + PG F ++ + L EACEYF
Sbjct: 404 VSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFN 463
Query: 478 EMVGRGLLS-APQYGTLKALLNSLLRAQKV 506
EM+ G+ + LK L R KV
Sbjct: 464 EMLDVGIRPPGHMFSRLKQTLLDEGRKDKV 493
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
Identities = 137/439 (31%), Positives = 231/439 (52%)
Query: 51 KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
+E + +C+N +T S E S +VE++ +++ + + +E L + L L
Sbjct: 105 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 164
Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
V+ R A +R++ WA+++ + H Y +++ L+K R+F + +++EEM +
Sbjct: 165 VEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK 224
Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
L+T E F I M+ FA+A+ KKA+ + + M KY + CLLD+L + KE
Sbjct: 225 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282
Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
A LFD+++ERF P++ +T LL GWC+ L+EA + M D G +PDIV +N +L G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEG 342
Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
+ K +DA +L M+ KG PN SYT++I+ C+ ME A F +M SG + D
Sbjct: 343 LLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY--LHIMLAHXXXXXXXXXXXX 405
YT LI+GF +K+D YE+L M ++G P+ TY L ++A+
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYN 462
Query: 406 XXXXRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
+I P + +N++++ + VW EM + P +S+ V++ G +G
Sbjct: 463 KMIQNEIE--PSIHTFNMIMKSYFMARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIG 520
Query: 466 QGCLIEACEYFKEMVGRGL 484
+G EAC Y +EM+ +G+
Sbjct: 521 EGKSREACRYLEEMLDKGM 539
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 138/441 (31%), Positives = 235/441 (53%)
Query: 51 KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
+E + +C+N +T S E S +VE++ +++ + + +E L + L L
Sbjct: 105 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 164
Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
V+ R A +R++ WA+++ + H+ Y +++ L+K R+F + +++EEM +
Sbjct: 165 VEVLERFRHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTK 224
Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
L+T E F I M+ FA+A+ KKA+ + + M KY + CLLD+L + KE
Sbjct: 225 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 282
Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
A LFD+++ERF P++ +T LL GWC+ L+EA + M D G +PDIV +N +L G
Sbjct: 283 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 342
Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
+ K +DA +L M+ KG PN SYT++I+ C+ ME A F +M SG + D
Sbjct: 343 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 402
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY--LHIMLAHXXXXXXXXXXXX 405
YT LI+GF +K+D YE+L M ++G P+ TY L ++A+
Sbjct: 403 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN 462
Query: 406 XXXXRKIGCVPDVSNYNVVIR--LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
+I P + +N++++ + E+ AV W+EM + P +S+ V++ G
Sbjct: 463 KMIQNEIE--PSIHTFNMIMKSYFVARNYEMGRAV--WDEMIKKGICPDDNSYTVLIRGL 518
Query: 464 LGQGCLIEACEYFKEMVGRGL 484
+ +G EAC Y +EM+ +G+
Sbjct: 519 ISEGKSREACRYLEEMLDKGM 539
|
|
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 138/441 (31%), Positives = 234/441 (53%)
Query: 51 KEDDCKCNNTTDTHGSHNEFS---HDVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLT 107
+E + +C+N +T S E S +VE++ +++ + + +E L + L L
Sbjct: 104 EEVESECDNDEETGVSCVESSTNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLI 163
Query: 108 ERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167
V+ R A +R++ WA+++ + H Y +++ L+K R+F + +++EEM +
Sbjct: 164 VEVLERFRHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTK 223
Query: 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227
L+T E F I M+ FA+A+ KKA+ + + M KY + CLLD+L + KE
Sbjct: 224 G--LLTMETFTIAMKAFAAAKERKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKE 281
Query: 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG 287
A LFD+++ERF P++ +T LL GWC+ L+EA + M D G +PDIV +N +L G
Sbjct: 282 AQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEG 341
Query: 288 YAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
+ K +DA +L M+ KG PN SYT++I+ C+ ME A F +M SG + D
Sbjct: 342 LLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPD 401
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY--LHIMLAHXXXXXXXXXXXX 405
YT LI+GF +K+D YE+L M ++G P+ TY L ++A+
Sbjct: 402 AAVYTCLITGFGTQKKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYN 461
Query: 406 XXXXRKIGCVPDVSNYNVVIR--LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
+I P + +N++++ + E+ AV W+EM + P +S+ V++ G
Sbjct: 462 KMIQNEIE--PSIHTFNMIMKSYFVARNYEMGRAV--WDEMIKKGICPDDNSYTVLIRGL 517
Query: 464 LGQGCLIEACEYFKEMVGRGL 484
+ +G EAC Y +EM+ +G+
Sbjct: 518 ISEGKSREACRYLEEMLDKGM 538
|
|
| TAIR|locus:2094394 AT3G22670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 564 (203.6 bits), Expect = 1.3e-54, P = 1.3e-54
Identities = 127/452 (28%), Positives = 226/452 (50%)
Query: 73 DVEKIFRILKKFHSRLPKLELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQP 132
D++K+ L K + + L VV+ L +V+ R + N Y +++WA+ Q
Sbjct: 101 DIDKVCDFLNKKDTSHEDVVKELSKCDVVVTESLVLQVLRRFSNGWNQAYGFFIWANSQT 160
Query: 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRK-EKPQLITTEVFVILMRRFASARMVK 191
YVHS Y A++ L K R F +W L+ EM K E+ +L+T + +MRR A +
Sbjct: 161 GYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLDTMSKVMRRLAKSGKYN 220
Query: 192 KAIEVLDEMPK-YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
KA++ EM K YG + D L+DAL K +S++ A ++F ++ + KP R F L+
Sbjct: 221 KAVDAFLEMEKSYGVKTDTIAMNSLMDALVKENSIEHAHEVFLKLFDTIKPDARTFNILI 280
Query: 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310
+G+CK K +A+ ++ MK F PD+V Y + + Y + G E+L+EMR GC+
Sbjct: 281 HGFCKARKFDDARAMMDLMKVTEFTPDVVTYTSFVEAYCKEGDFRRVNEMLEEMRENGCN 340
Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370
PN +YT+++ +L + +++ EA + +M+ GC D Y++LI K+ + EI
Sbjct: 341 PNVVTYTIVMHSLGKSKQVAEALGVYEKMKEDGCVPDAKFYSSLIHILSKTGRFKDAAEI 400
Query: 371 LDSMIQRGILPNQLTY---LHIMLAHXXXXXXXXXXXXXXXXRKIGCVPDVSNYNVVIRL 427
+ M +G+ + L Y + L H C P+V Y ++++
Sbjct: 401 FEDMTNQGVRRDVLVYNTMISAALHHSRDEMALRLLKRMEDEEGESCSPNVETYAPLLKM 460
Query: 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487
C ++K + + M +S ++++++ G G + EAC +F+E V +G++
Sbjct: 461 CCHKKKMKLLGILLHHMVKNDVSIDVSTYILLIRGLCMSGKVEEACLFFEEAVRKGMV-- 518
Query: 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519
P+ T K L++ L + E + S + +K
Sbjct: 519 PRDSTCKMLVDELEKKNMAEAKLKIQSLVQSK 550
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| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 127/442 (28%), Positives = 215/442 (48%)
Query: 67 HNEFSHD-VEKIFRILKKFHSRLPKLELALQHSGVVLRP----GLTERVINRCGDAGNLG 121
H+ S D V +I R+L H R PK +L +H+ V P L E+V+ RC + G
Sbjct: 30 HDPPSPDLVNEISRVLSD-H-RNPKDDL--EHTLVAYSPRVSSNLVEQVLKRCKNLGFPA 85
Query: 122 YRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181
+R+++WA + P++ HS + Y L++ L ++F +W + E R+ I+++VF I+
Sbjct: 86 HRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISSKVFWIVF 145
Query: 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFK 240
R ++ A + +A + M ++G +P LL +LC V A + F + +
Sbjct: 146 RAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGKAKGFGIV 205
Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
PS + ++ L+ GW + A+ V +M + D++ YN LL + G + +++
Sbjct: 206 PSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDVDGGYKM 265
Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
+EM G P+A S+ + I A C + A + M+R +V T+ +I CK
Sbjct: 266 FQEMGNLGLKPDAYSFAIFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCK 325
Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHXXXXXXXXXXXXXXXXRKIGCVPDVSN 420
+ K+D Y +LD MIQ+G P+ TY IM H + C+PD
Sbjct: 326 NEKVDDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHT 385
Query: 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ-GCLIEACEYFKEM 479
YN+V++L ++G A +W M P ++ VM+HG + + G L EAC YF+ M
Sbjct: 386 YNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYTVMIHGLVRKKGKLEEACRYFEMM 445
Query: 480 VGRGLLSAPQYGTLKALLNSLL 501
+ G+ P Y T +L + L
Sbjct: 446 IDEGI---PPYSTTVEMLRNRL 464
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| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 531 (192.0 bits), Expect = 4.0e-51, P = 4.0e-51
Identities = 124/418 (29%), Positives = 212/418 (50%)
Query: 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200
Y +I K + ++++ M P ++T + ++R + +K+A+EVLD M
Sbjct: 175 YNVMISGYCKAGEINNALSVLDRM-SVSPDVVT---YNTILRSLCDSGKLKQAMEVLDRM 230
Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKL 259
+ C PD + L++A C++S V A KL DEMR+R P + + L+ G CKEG+L
Sbjct: 231 LQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRL 290
Query: 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVL 319
EA L M +G +P+++ +N +L G+ DA +LL +M RKG P+ ++ +L
Sbjct: 291 DEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNIL 350
Query: 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
I LCR + A +M + GC+ + ++Y L+ GFCK +K+DR E L+ M+ RG
Sbjct: 351 INFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGC 410
Query: 380 LPNQLTYLHIMLAHXXXXXXXXXXXXXXXXRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439
P+ +TY ++ A GC P + YN VI K G+ +A+
Sbjct: 411 YPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIK 470
Query: 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499
+ +EM A L P T ++ +V G +G + EA ++F E G+ P T +++
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGI--RPNAVTFNSIMLG 528
Query: 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
L ++++ + A D ++ +GC+ N ++TI I L G KEA ++ + +M
Sbjct: 529 LCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELLNELCNKGLM 586
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| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 111/423 (26%), Positives = 212/423 (50%)
Query: 104 PGLTERVINRCGDA--G---NLGYRYYMWASKQPNYVH-SYDVYRALIKSLSKMRKFGAV 157
P + VI +CG G + ++ WA+ + +Y H S Y +I K+R+F
Sbjct: 111 PSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLA 170
Query: 158 WALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217
W L++ M+ + I+ E F IL+RR+ A + +A+ + M YGC PD+ F ++
Sbjct: 171 WHLIDLMKSRNVE-ISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVIS 229
Query: 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277
L + EA FD +++RF+P + +T+L+ GWC+ G++ EA+ V +MK AG EP+
Sbjct: 230 NLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337
+ Y+ ++ + G+++ A ++ +M GC PNA ++ L++ + + E+ + +
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349
Query: 338 EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHXXXX 397
+M++ GCE D +TY LI C+ ++ ++L++MI++ N T+ I
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409
Query: 398 XXXXXXXXXXXXRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457
+ C P+ YN+++R+ + + EM+ + P +++
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469
Query: 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517
++V F G G A + FKEMV L+ P + +L L RA +++ +++ ++
Sbjct: 470 LLVTMFCGMGHWNNAYKLFKEMVEEKCLT-PSLSLYEMVLAQLRRAGQLKKHEELVEKMI 528
Query: 518 TKG 520
KG
Sbjct: 529 QKG 531
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FH87 | PP447_ARATH | No assigned EC number | 0.6579 | 0.9420 | 0.9434 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.II.687.1 | hypothetical protein (602 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 638 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-24 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-18 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-13 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 9e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-05 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam10037 | 417 | pfam10037, MRP-S27, Mitochondrial 28S ribosomal pr | 0.001 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 5e-24
Identities = 78/320 (24%), Positives = 149/320 (46%), Gaps = 23/320 (7%)
Query: 128 ASKQPNYVHSYDVYRALIKSLSKM----RKFGAVWALMEEMRKEKPQLITTEVFVILMRR 183
A + N VH++ ALI ++ + FGA + +M + KP + VF L+
Sbjct: 501 AGVEAN-VHTFG---ALIDGCARAGQVAKAFGA-YGIMRS-KNVKPDRV---VFNALISA 551
Query: 184 FASARMVKKAIEVLDEM--PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFK 240
+ V +A +VL EM + +PD G L+ A V A +++ + E K
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611
Query: 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300
+ +T + ++G A + MK G +PD V ++ L+ G + AFE+
Sbjct: 612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEI 671
Query: 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
L++ R++G SY+ L+ A + ++A + +++ V T LI+ C+
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420
++ + E+L M + G+ PN +TY +++A E+K++ + ++L+ + ++ G P++
Sbjct: 732 GNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVM 791
Query: 421 YNVVIRL-------ACKLGE 433
+ L AC LGE
Sbjct: 792 CRCITGLCLRRFEKACALGE 811
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-19
Identities = 88/397 (22%), Positives = 174/397 (43%), Gaps = 16/397 (4%)
Query: 183 RFASARMVKKAIEVLDEMPKYG-CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP 241
R +K I++L++M K G + D+ A K +VKEA + +R P
Sbjct: 379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---P 435
Query: 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301
+L F L+ + A VL +++AG + D +Y L+S A+ GK+ FE+
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361
EM G + N +++ LI R ++ +A A+ M + D V + LIS +S
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS 555
Query: 362 RKIDRCYEILDSMIQRG--ILPNQLTYLHIMLAHEKKEELEECVELMGEMRK--IGCVPD 417
+DR +++L M I P+ +T +M A +++ E+ + + I P+
Sbjct: 556 GAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPE 615
Query: 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477
V Y + + + G+ A++++++M+ + P F +V G L +A E +
Sbjct: 616 V--YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 478 EMVGRGLLSAPQYGTL--KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535
+ +G+ + GT+ +L+ + A+ + A +++ I + V I +L
Sbjct: 674 DARKQGI----KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729
Query: 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572
+ +A +M + P T++ L+ ++
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 2e-18
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325
PD+V YN L+ GY + GK+ +A +L EM+++G PN +Y++LI LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 86.5 bits (214), Expect = 2e-17
Identities = 79/360 (21%), Positives = 160/360 (44%), Gaps = 13/360 (3%)
Query: 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232
T F +LM AS++ + A+ VL + + G + D ++ L+ K+ V ++F
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 233 DEMRER-FKPSLRHFTSLLYGWCKEGKLVEA--KYVLVQMKDAGFEPDIVVYNNLLSGYA 289
EM + ++ F +L+ G + G++ +A Y +++ K+ +PD VV+N L+S
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV--KPDRVVFNALISACG 553
Query: 290 QMGKMTDAFELLKEMR--RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD 347
Q G + AF++L EM+ DP+ + L++A +++ A + + +
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ--LTYLHIMLAHEKKEELEECVEL 405
YT ++ + D I D M ++G+ P++ + L + H L++ E+
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD--LDKAFEI 671
Query: 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465
+ + RK G +Y+ ++ K+A+ ++ ++++ L P + ++
Sbjct: 672 LQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCE 731
Query: 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV 525
L +A E EM GL P T LL + R ++ D+ S G + N+
Sbjct: 732 GNQLPKALEVLSEMKRLGL--CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNL 789
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Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360
P+ +Y LI C+ K+EEA + F EM++ G + +V TY+ LI G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.4 bits (193), Expect = 5e-15
Identities = 96/448 (21%), Positives = 167/448 (37%), Gaps = 118/448 (26%)
Query: 141 YRALIKSLSKMRKFGAVWAL---MEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVL 197
Y AL+++ ++ V A+ +E E Q + V + M+ A +
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV----LLMHVKCGMLIDARRLF 181
Query: 198 DEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER--------FKPSLR----- 244
DEMP E + +G ++ L + +EA LF EM E F LR
Sbjct: 182 DEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237
Query: 245 ---------HFTSLLYGWC--------------KEGKLVEAKYVLVQMKDAGFEPDIVVY 281
H L G K G + +A+ V M E V +
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAW 293
Query: 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341
N++L+GYA G +A L EMR G + +++++I+ R+ +E A +A + R
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353
Query: 342 SGCEADVVTYTTLISGFCKSRKID-------------------------------RCYEI 370
+G D+V T L+ + K +++ + E+
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413
Query: 371 LDSMIQRGILPNQLTYLHIMLAHEKK---EELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
+ MI G+ PN +T+L ++ A E+ E + M E +I P +Y +I L
Sbjct: 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK--PRAMHYACMIEL 471
Query: 428 ACKLGELKEA------------VNVWNEMEAAS------------------LSP-GTDSF 456
+ G L EA VN+W + A + P +++
Sbjct: 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531
Query: 457 VVMVHGFLGQGCLIEACEYFKEMVGRGL 484
VV+++ + G EA + + + +GL
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETLKRKGL 559
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 8e-13
Identities = 57/236 (24%), Positives = 107/236 (45%), Gaps = 20/236 (8%)
Query: 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF 274
L++ K + +A ++F + E+ S +TS++ G + EA QM
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDVIS---WTSIIAGLRLNNRCFEALIFFRQML-LTL 485
Query: 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD-----PNANSYTVLIQALCRMEKM 329
+P+ V LS A++G + E+ + R G PNA L+ R +M
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYVRCGRM 540
Query: 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389
A F + E DVV++ L++G+ K E+ + M++ G+ P+++T++ +
Sbjct: 541 NYAWNQF-----NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595
Query: 390 MLAHEKKEELEECVELMGEMR-KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444
+ A + + + +E M K P++ +Y V+ L + G+L EA N N+M
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 6e-12
Identities = 89/434 (20%), Positives = 172/434 (39%), Gaps = 51/434 (11%)
Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254
EV + ++G E D V L+ K V A +FD M R S + +++ G+
Sbjct: 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS---WNAMISGYF 264
Query: 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN 314
+ G+ +E + M++ +PD++ +++S +G E+ + + G + +
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVS 324
Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
LIQ + EA + F ME D V++T +ISG+ K+ D+ E M
Sbjct: 325 VCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434
Q + P+++T ++ A +L+ V+L + G + V N +I + K +
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 435 KEAVNVWNEMEAASLSPGTD--SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492
+A+ V++ + P D S+ ++ G EA +F++M+ P T
Sbjct: 441 DKALEVFHNI------PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT---LKPNSVT 491
Query: 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG------------------------------CE 522
L A L++ R + K++ + ++ G E
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE 551
Query: 523 LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582
+V +W I + ++G A M+++ V P TF L+ + + +
Sbjct: 552 KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR---SGMVTQG 608
Query: 583 TEKVRKMAAERQIT 596
E M + IT
Sbjct: 609 LEYFHSMEEKYSIT 622
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.7 bits (146), Expect = 9e-12
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386
DVVTY TLI G+CK K++ ++ + M +RGI PN TY
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 1e-10
Identities = 83/449 (18%), Positives = 174/449 (38%), Gaps = 61/449 (13%)
Query: 215 LLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273
L++A S++ ++ + F+P +L K G L++A+ + +M
Sbjct: 129 LVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP--- 185
Query: 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA----------- 322
E ++ + ++ G G +AF L +EM G D ++ V+++A
Sbjct: 186 -ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244
Query: 323 ---LCRME---------------------KMEEANRAFVEMERSGCEADVVTYTTLISGF 358
C ++ +E+A F M E V + ++++G+
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGY 300
Query: 359 CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418
+ + M G+ +Q T+ ++ + LE + + + G D+
Sbjct: 301 ALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
Query: 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478
++ L K G +++A NV++ M +L S+ ++ G+ G +A E F+
Sbjct: 361 VANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFER 416
Query: 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW-SCIVTKGCELNVYAWTIWIHSLFS 537
M+ G+ AP + T A+L++ + E +++ S + + I L
Sbjct: 417 MIAEGV--APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 538 NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER---- 593
G + EA + + A P + +A L+ + N ++ EK+ M E+
Sbjct: 475 EGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531
Query: 594 QITFKMYKRRGERDLKEKAKKQVDGRKRR 622
+ +Y G + +A K V+ KR+
Sbjct: 532 VVLLNLYNSSGRQA---EAAKVVETLKRK 557
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 4e-09
Identities = 95/445 (21%), Positives = 168/445 (37%), Gaps = 59/445 (13%)
Query: 156 AVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV----LDEMPKYGCEPDEFV 211
A+ L+E M +E + + +V L R R V++ V L P G +
Sbjct: 70 ALK-LLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR----L 123
Query: 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271
+L + + A +F +M ER L + L+ G+ K G EA + +M
Sbjct: 124 GNAMLSMFVRFGELVHAWYVFGKMPER---DLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 272 AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331
AG PD+ + +L + + E+ + R G + + + LI + +
Sbjct: 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS 240
Query: 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML 391
A F M R D +++ +ISG+ ++ + E+ +M + + P+ +T ++
Sbjct: 241 ARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 392 AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451
A E + E+ G + K G DVS N +I++ LG EA V++ ME
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV- 355
Query: 452 GTDSFVVMVHGFLGQGCLIEACEYFKEM-----------VGRGLLSAPQYGTL------- 493
S+ M+ G+ G +A E + M + L + G L
Sbjct: 356 ---SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412
Query: 494 ---------------KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538
AL+ + + ++ A +V+ I K +V +WT I L N
Sbjct: 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLN 468
Query: 539 GHVKEACSYCLDMMDADVMPQPDTF 563
EA + M + P T
Sbjct: 469 NRCFEALIF-FRQMLLTLKPNSVTL 492
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 5e-09
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221
L+ + V++A+++ +EM K G +P+ + + L+D LCK
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.8 bits (123), Expect = 8e-09
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374
G + DVVTY TLI G C++ ++D E+LD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-08
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK 255
PD + L+D CK V+EA KLF+EM++R KP++ ++ L+ G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 4e-08
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463
PDV YN +I CK G+++EA+ ++NEM+ + P ++ +++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 7e-08
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
+ +L+ G+CK+GK+ EA + +MK G +P++ Y+ L+ G +
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 1e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236
G +PD + L+D LC+ V EA +L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 273 GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305
G +PD+V YN L+ G + G++ +A ELL EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
V YN+L+SGY + GK+ +A EL KEM+ KG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA 313
V YN L+ G + G++ +A EL KEM+ +G +P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382
VTY TLI G CK+ +++ E+ M +RGI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 28/182 (15%)
Query: 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238
IL+ + + A+E+ + M + G PDE F LL A ++ V + + F M E+
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618
Query: 239 FK--PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSG-----YAQM 291
+ P+L+H+ ++ + GKL EA + +M PD V+ LL+ + ++
Sbjct: 619 YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVEL 675
Query: 292 GKMTDA--FELLKEMRRKGCDPNANSYTVLIQALCRME----KMEEANRAFVEMERSGCE 345
G++ FEL DPN+ Y +L LC + K +E R M +G
Sbjct: 676 GELAAQHIFEL---------DPNSVGYYIL---LCNLYADAGKWDEVARVRKTMRENGLT 723
Query: 346 AD 347
D
Sbjct: 724 VD 725
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340
KG P+ +Y LI LCR +++EA EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 7e-06
Identities = 57/263 (21%), Positives = 99/263 (37%), Gaps = 27/263 (10%)
Query: 320 IQALCRMEKMEEANRAFVEMERSGC--EADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377
I+ L + EA F E+ +GC TY L+ + I + +
Sbjct: 94 IEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS--NYNVVIRLACKLGELK 435
G P+Q ++L H K L + L EM P+ + ++ +I G +
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYR 206
Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCL-----IEACEYFKEMVGRGLLSAPQY 490
EA ++ EM +FVVM+ G G + C +VG +S
Sbjct: 207 EAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC--- 263
Query: 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550
AL++ + +E A+ V+ + K AW + +G+ +EA +
Sbjct: 264 ----ALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYE 315
Query: 551 MMDADVMPQPDTFAKLMRGLKKL 573
M D+ V TF+ ++R +L
Sbjct: 316 MRDSGVSIDQFTFSIMIRIFSRL 338
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 9e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379
VTY +LISG+CK+ K++ E+ M ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 1e-05
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445
G PDV YN +I C+ G + EAV + +EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 2e-05
Identities = 63/274 (22%), Positives = 109/274 (39%), Gaps = 51/274 (18%)
Query: 78 FRILKKFHSRLPKLELALQ-HSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVH 136
F I+ + SRL LE A Q H+G++ R G ++ N
Sbjct: 328 FSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIV------AN----------------- 363
Query: 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFV--ILMRRFASARMVKKAI 194
AL+ SK W ME+ R ++ + L+ + + KA+
Sbjct: 364 -----TALVDLYSK-------WGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411
Query: 195 EVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYG 252
E+ + M G P+ F +L A + ++ ++F M E R KP H+ ++
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK--GCD 310
+EG L EA Y ++ + A F+P + ++ LL+ ++ EL + K G
Sbjct: 472 LGREGLLDEA-YAMI--RRAPFKPTVNMWAALLTA----CRIHKNLELGRLAAEKLYGMG 524
Query: 311 PNA-NSYTVLIQALCRMEKMEEANRAFVEMERSG 343
P N+Y VL+ + EA + ++R G
Sbjct: 525 PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 2e-05
Identities = 67/330 (20%), Positives = 121/330 (36%), Gaps = 43/330 (13%)
Query: 245 HFT-SLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303
H + S L C G+L +A +L M++ D Y L L E
Sbjct: 52 HDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR--------------LCE 97
Query: 304 MRR---------KGCDPNANSYTV-----LIQALCRMEKMEEANRAFVEMERSGCEADVV 349
+R + S V ++ R ++ A F +M E D+
Sbjct: 98 WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLF 153
Query: 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409
++ L+ G+ K+ D + M+ G+ P+ T+ ++ +L E+ +
Sbjct: 154 SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD--SFVVMVHGFLGQG 467
+ G DV N +I + K G++ A V++ M P D S+ M+ G+ G
Sbjct: 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM------PRRDCISWNAMISGYFENG 267
Query: 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527
+E E F M R L P T+ +++++ + +++ +V G ++V
Sbjct: 268 ECLEGLELFFTM--RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325
Query: 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVM 557
I S G EA M D +
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADV 348
+Y LI LC+ ++EEA F EM+ G E DV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 315 SYTVLIQALCRMEKMEEANRAFVEMERSGC 344
+Y LI C+ K+EEA F EM+ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE 209
+ L+ A V++A+E+ EM + G EPD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278
+ +L+ G CK G++ EA + +MK+ G EPD+
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27 | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 39/163 (23%), Positives = 58/163 (35%), Gaps = 34/163 (20%)
Query: 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM--RERFKPSLRHFTSL 249
KA+ L +YG PD+F LLD+ K + K AA + E+ +E F SL
Sbjct: 119 KALYTLRNRIQYGIFPDDFTANLLLDSFLKKGNFKSAASVVTELMLQESFDNESTRILSL 178
Query: 250 --LYGWCKEGKL-----------------VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290
LY + KE + +KD F + L GYA
Sbjct: 179 YVLYSYAKEFDPFEDLAEQPDLDWVEERKFGVSLLRNGLKDDNF----DGLSPQLLGYAL 234
Query: 291 MGKMTDA---FELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330
+G + + + M P +L +AL ME +
Sbjct: 235 LGLVEGLGGIHAVFQSM------PLLWGSVLLGKALEAMELLA 271
|
Members of this family of small ribosomal proteins possess one of three conserved blocks of sequence found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins, leaving open the possibility that MRP-S27 might be a functional partner of GTP-binding ribosomal proteins. Length = 417 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.001
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381
+ TY L+ K+ D +L+ M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 210 FVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPS 242
+ L+D LCK V+EA +LF EM+ER +P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP 311
+ YN LL A+ G A +L+EM+ G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.65 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.64 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.64 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.6 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.6 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.58 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.57 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.57 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.51 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.48 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.38 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.37 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.37 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.37 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.34 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.31 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.31 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.28 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.27 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.27 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.18 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.18 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.16 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.13 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.13 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.12 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.06 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.05 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.0 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.94 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.81 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.81 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.8 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.79 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.79 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.69 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.68 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.65 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.62 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.6 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.59 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.54 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.51 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.47 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.45 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.45 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.42 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.38 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.36 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.26 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.19 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.06 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.06 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.02 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.01 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.97 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.96 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.91 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.91 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.87 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.86 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.84 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.84 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.8 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.78 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.73 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.73 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.72 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.71 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.65 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.64 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.64 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.59 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.58 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.57 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.55 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.53 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.53 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.47 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.44 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.43 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.4 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.39 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.37 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.37 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.37 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.37 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.34 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.32 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.3 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.26 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.25 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.25 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.19 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.17 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.1 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.1 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.99 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.95 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.93 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.82 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.78 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.76 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.75 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.71 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.59 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.53 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.48 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.46 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.35 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.35 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.25 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.2 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.17 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.15 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.11 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.1 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.07 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.04 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.01 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.0 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.93 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.92 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.88 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.82 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.81 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.76 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.7 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.68 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.62 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.61 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.61 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.59 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.59 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.56 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.47 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.47 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.45 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.36 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.31 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.21 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.03 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.97 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.91 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 94.89 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.83 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 94.83 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.83 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.79 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.73 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.72 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.72 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.65 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.64 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.62 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.61 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.48 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.48 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.46 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 94.45 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.37 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.32 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.31 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.24 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.1 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.07 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.88 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.79 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.75 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.02 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.96 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.81 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.24 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.1 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 92.08 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.77 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.65 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 91.63 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.53 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.52 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 91.49 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.24 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.23 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 91.0 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.44 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.32 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.25 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.09 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.64 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 89.42 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.4 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.35 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.3 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.26 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 88.84 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.74 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 88.03 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 86.9 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.52 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.31 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 86.01 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 85.92 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.79 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.54 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.53 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 85.5 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 85.49 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.63 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 84.6 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 84.52 | |
| PRK09687 | 280 | putative lyase; Provisional | 84.22 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 83.92 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.8 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.72 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.7 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 83.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 83.37 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.34 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.7 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.47 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 82.28 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 81.64 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 81.57 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 81.42 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 81.41 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 81.39 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.88 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 80.71 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.57 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.16 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-70 Score=614.91 Aligned_cols=516 Identities=18% Similarity=0.221 Sum_probs=479.5
Q ss_pred HHHHhhcCCCCChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 006630 92 ELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQL 171 (638)
Q Consensus 92 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~ 171 (638)
+..+...|+.++..+++.+|..|+++|++..+...|.... .+|..+||+||.+|++.|++++|+++|++|...+ ..
T Consensus 210 ~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g-~~ 285 (857)
T PLN03077 210 HAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP---RRDCISWNAMISGYFENGECLEGLELFFTMRELS-VD 285 (857)
T ss_pred HHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC-CC
Confidence 3344445666666667777778888887777777676543 4688899999999999999999999999998876 45
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|++|+.+|+++|++++|.++|++|.. ||..+||.+|.
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~ 362 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMIS 362 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999974 59999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 006630 252 GWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (638)
+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||++|+++|++++
T Consensus 363 ~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~ 442 (857)
T PLN03077 363 GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442 (857)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 411 (638)
|.++|++|. .+|.++|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+
T Consensus 443 A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~ 517 (857)
T PLN03077 443 ALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR 517 (857)
T ss_pred HHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH
Confidence 999999998 57999999999999999999999999999986 5999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH
Q 006630 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491 (638)
Q Consensus 412 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~ 491 (638)
.|+.+|..++++||++|+++|++++|.++|+.+ .||..+||+||.+|++.|+.++|+++|++|.+.|+ .||..
T Consensus 518 ~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~--~Pd~~ 590 (857)
T PLN03077 518 TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV--NPDEV 590 (857)
T ss_pred hCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCcc
Confidence 999999999999999999999999999999987 58999999999999999999999999999999998 79999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIV-TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|++|+++|++.|++++|.+++++| ++.||..+|.+|+.+|
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac 667 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNAC 667 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHH
Confidence 99999999999999999999999998 5699999999999999999999999999999988 4799999999999999
Q ss_pred HhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhhh-hhhhcc
Q 006630 571 KKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRRA-RQRRWG 629 (638)
Q Consensus 571 ~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 629 (638)
...|+.+.|+.+.+++++++|+++..+ ++|+..|+|++|.++++.|++++-++ +...|.
T Consensus 668 ~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 668 RIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 999999999999999999999998875 79999999999999999999988754 444453
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-68 Score=584.61 Aligned_cols=478 Identities=18% Similarity=0.272 Sum_probs=456.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
..+..+|+++|..|.+.|++++|+++|+.|...++..++..+|+.++.+|++.++++.|.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 34566899999999999999999999999998776678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 294 (638)
|+++|+++|++++|.++|++|.+ ||..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999975 699999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 295 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
+.+.+++..+.+.|+.||..+|++||++|+++|++++|.++|++|. ++|.++||+||.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 679999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 375 IQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454 (638)
Q Consensus 375 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (638)
.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|++|+++|+++|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 47888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT-KGCELNVYAWTIWIH 533 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~li~ 533 (638)
+||+||.+|++.|+.++|+++|++|.+.|+ .||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++|++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~--~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGV--APNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 999999999999999999999999999998 79999999999999999999999999999986 499999999999999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhH
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLK 609 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A 609 (638)
+|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|+.+++++++++|++...+ ++|++.|+|++|
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 999999999999998765 6799999999999999999999999999999999999987664 899999999999
Q ss_pred HHHHhhhhhhhhh-hhhhhc
Q 006630 610 EKAKKQVDGRKRR-ARQRRW 628 (638)
Q Consensus 610 ~~~~~~~~~~~~~-~~~~~~ 628 (638)
.++++.|++++.+ .+...|
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHcCCccCCCeeE
Confidence 9999999988864 344445
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-66 Score=569.68 Aligned_cols=512 Identities=18% Similarity=0.263 Sum_probs=464.1
Q ss_pred hhHHHHHHHHhccCchhHHHHHHHhhh-CCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 006630 104 PGLTERVINRCGDAGNLGYRYYMWASK-QPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILM 181 (638)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li 181 (638)
...+..++..|++.|.+..++..+..+ ..+ ..++...++.++..|.+.|.+++|+.+|+.|.. ++..+|+.++
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL 444 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLM 444 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHH
Confidence 345677788888889887665555433 234 457888889999999999999999999999863 6899999999
Q ss_pred HHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHH
Q 006630 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ +..||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999975 57899999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH--cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRR--KGCDPNANSYTVLIQALCRMEKMEEANRAFVE 338 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (638)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 339 MERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV 418 (638)
Q Consensus 339 m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 418 (638)
|.+.|+.|+..+|+++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 498 (638)
.+|+.||.+|+++|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|+++|++|...|+ .|+..||+.++.
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi--~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL--CPNTITYSILLV 762 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998 799999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-----------------------cCCHHHHHHHHHHHHhCC
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS-----------------------NGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-----------------------~g~~~~A~~~~~~m~~~~ 555 (638)
+|++.|++++|.++|++|.+.|+.||..+|++++..+.+ .+..++|+.+|++|++.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999876432 123578999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh--cccccc-hhhhhhhh-hhHHHHHhhhhhhhhhh
Q 006630 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE--RQITFK-MYKRRGER-DLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 556 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~-~y~~~g~~-~~A~~~~~~~~~~~~~~ 623 (638)
+.||..||..++.++.+.++.+.+..+++... ..|. +...++ +..-.|++ ++|..+++.+..++...
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~-~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHDATLRNRLIENLG-ISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred CCCCHHHHHHHHHHhcccccHHHHHHHHHHhc-cCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCCCC
Confidence 99999999999977778788888877776543 2232 223333 22333554 57999999988776543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-67 Score=589.75 Aligned_cols=509 Identities=19% Similarity=0.261 Sum_probs=468.7
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 006630 91 LELALQHSGVVLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ 170 (638)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~ 170 (638)
++..+...+..++..+.+.++..|++.|++..++..|.... .+|.++||++|.+|++.|++++|+++|++|...+ .
T Consensus 108 ~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~---~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g-~ 183 (857)
T PLN03077 108 VCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP---ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAG-V 183 (857)
T ss_pred HHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC---CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C
Confidence 44444456666777778899999999999888887777653 5789999999999999999999999999999875 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
.||..||+.++++|+..+++..+.+++..|.+.|+.||..+++.||.+|+++|++++|.++|++|.. +|..+||+||
T Consensus 184 ~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li 260 (857)
T PLN03077 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMI 260 (857)
T ss_pred CCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999999985 5999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKME 330 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 330 (638)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++..|.+.|+.||..+|+.|+.+|++.|+++
T Consensus 261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 340 (857)
T PLN03077 261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 331 EANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
+|.++|++|. .||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.
T Consensus 341 ~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 341 EAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred HHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 9999999997 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH
Q 006630 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490 (638)
Q Consensus 411 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~ 490 (638)
+.|+.|+..+|+.||++|+++|++++|.++|++|.+ +|..+|+.||.+|++.|+.++|+.+|++|... + .|+.
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~--~pd~ 489 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-L--KPNS 489 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-C--CCCH
Confidence 999999999999999999999999999999999974 67789999999999999999999999999864 4 6999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHccCC
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGC------------------------------ELNVYAWTIWIHSLFSNGH 540 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------------------------------~p~~~~~~~li~~~~~~g~ 540 (638)
.||..++.+|++.|+++.+.+++..+.+.|+ .||..+||+||.+|+++|+
T Consensus 490 ~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~ 569 (857)
T PLN03077 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGK 569 (857)
T ss_pred hHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCC
Confidence 9999888887777777777777766665543 5688899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------cchhhhhhhhhhHHHHHh
Q 006630 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------FKMYKRRGERDLKEKAKK 614 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~y~~~g~~~~A~~~~~ 614 (638)
.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++++.+.+..+-.|.. +++|.+.|++++|.++++
T Consensus 570 ~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 570 GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998654433332 489999999999999999
Q ss_pred hhh
Q 006630 615 QVD 617 (638)
Q Consensus 615 ~~~ 617 (638)
+|.
T Consensus 650 ~m~ 652 (857)
T PLN03077 650 KMP 652 (857)
T ss_pred HCC
Confidence 874
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-64 Score=551.78 Aligned_cols=493 Identities=17% Similarity=0.269 Sum_probs=456.2
Q ss_pred HHHHHHhhcCCC-CChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 006630 90 KLELALQHSGVV-LRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEK 168 (638)
Q Consensus 90 ~~~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 168 (638)
++...|...|+. ++......++..|.+.|.+..++..+..+. .|+..+|+.++.+|++.|++++|+++|++|.+.+
T Consensus 391 ~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~---~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~G 467 (1060)
T PLN03218 391 DLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR---NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAG 467 (1060)
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC---CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC
Confidence 344556666764 333345667888998888877766555443 3899999999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHH
Q 006630 169 PQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFT 247 (638)
Q Consensus 169 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 247 (638)
. .++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ +..||..+|+
T Consensus 468 l-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn 546 (1060)
T PLN03218 468 L-KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFN 546 (1060)
T ss_pred C-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4 5899999999999999999999999999999999999999999999999999999999999999975 6899999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 006630 248 SLLYGWCKEGKLVEAKYVLVQMKD--AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR 325 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 325 (638)
.||.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++
T Consensus 547 sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence 999999999999999999999986 678999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405 (638)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 405 (638)
.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006630 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485 (638)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 485 (638)
|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|.+|.+.|+
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi- 785 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI- 785 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 486 SAPQYGTLKALLNSLLR----A-------------------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 486 ~~p~~~~~~~ll~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
.|+..+|+.++..|.+ + +..++|..+|++|.+.|+.||..+|+.++.+++..+..+
T Consensus 786 -~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~ 864 (1060)
T PLN03218 786 -KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDAT 864 (1060)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHH
Confidence 7999999999876542 1 124679999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.+..+++.|...+..|+..+|+++++++.+. .++|..+++++.+.+
T Consensus 865 ~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 865 LRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred HHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 9999999998888899999999999998432 468999999999876
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-58 Score=504.13 Aligned_cols=468 Identities=16% Similarity=0.205 Sum_probs=426.1
Q ss_pred ChhHHHHHHHHhccCchhHH--HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGY--RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l 180 (638)
+....+.+|..+.+.|.... .+|.|.....++.|+..+|+.++.++++.++++.+.+++..|.+.+ ..++..+++.+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 33356778888888887654 4555655445578999999999999999999999999999999876 45799999999
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCH
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKL 259 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~ 259 (638)
+..|++.|++++|.++|++|. .||.++||+++.+|++.|++++|.++|++|.+ +..|+..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999997 58999999999999999999999999999964 5789999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (638)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+ +|..+||.||.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999864 58999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS 419 (638)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 419 (638)
.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|+.|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986 47889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCCcHHHHHHHHH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG-RGLLSAPQYGTLKALLN 498 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~p~~~~~~~ll~ 498 (638)
+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+ .|+..+|+.+++
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~--~p~~~~y~~li~ 470 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI--KPRAMHYACMIE 470 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC--CCCccchHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 476 699999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQ 577 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~ 577 (638)
+|++.|++++|.++++++ ++.|+..+|++++.+|..+|+++.|..+++++.+ +.|+ ..+|..+++.|.+.|+++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHH
Confidence 999999999999998765 5789999999999999999999999999998874 4564 568999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 006630 578 IAAEITEKVRKMA 590 (638)
Q Consensus 578 ~A~~~~~~~~~~~ 590 (638)
+|.++++++.+.+
T Consensus 546 ~A~~v~~~m~~~g 558 (697)
T PLN03081 546 EAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=305.82 Aligned_cols=469 Identities=12% Similarity=0.060 Sum_probs=304.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+...|..+...+...|++++|...|+.+....|. .......++..+.+.|++++|+.+++.+.... +.+..++..+.
T Consensus 396 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 472 (899)
T TIGR02917 396 NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE--LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLG 472 (899)
T ss_pred CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc--chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHH
Confidence 3444444445555555555555555554444332 22233334445555555555555555554332 34555666666
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
..|...|++++|...|+++.+..+.+...+..++..+...|++++|.+.|+++.+.+ +.+..++..+...+.+.|+.++
T Consensus 473 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 551 (899)
T TIGR02917 473 AIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEE 551 (899)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHH
Confidence 666666666666666666655555566666666666666666666666666666543 3455566666666666677777
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+.. +.+...|..+...|...|++++|+..|+.+.+
T Consensus 552 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 552 AVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777766666543 2345556666677777777777777777766543 44566777777777777777777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 377 RGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSF 456 (638)
Q Consensus 377 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 456 (638)
... .+...+..+...+...|++++|..+++.+.+.. +.+...+..++..+...|++++|.++++.+.+.. +++...+
T Consensus 630 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 706 (899)
T TIGR02917 630 LQP-DSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGF 706 (899)
T ss_pred hCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHH
Confidence 432 245566666777777777777777777776653 4456667777777777777777777777777665 5566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006630 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLF 536 (638)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 536 (638)
..+...+...|++++|++.|+++.... |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|.
T Consensus 707 ~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 707 ELEGDLYLRQKDYPAAIQAYRKALKRA----PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 777777777777777777777777664 343566667777777777777777777776653 335667777777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHH
Q 006630 537 SNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKA 612 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~ 612 (638)
..|++++|...|+++++.. .++..++..+...+...|+ ++|+..++++++..|+++..+ .+|...|++++|.+.
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 859 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPL 859 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 7788888888877777643 3456667777777777777 667777777777777776664 456677777777777
Q ss_pred Hhhhhhhhh
Q 006630 613 KKQVDGRKR 621 (638)
Q Consensus 613 ~~~~~~~~~ 621 (638)
++++.+..+
T Consensus 860 ~~~a~~~~~ 868 (899)
T TIGR02917 860 LRKAVNIAP 868 (899)
T ss_pred HHHHHhhCC
Confidence 777665544
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=304.61 Aligned_cols=466 Identities=13% Similarity=0.104 Sum_probs=414.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
.....+..++..+.+.|++++|..+++.+....|. ++.++..+...+...|++++|.+.|+++.+.. +.+...+..+
T Consensus 429 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 505 (899)
T TIGR02917 429 ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD--NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANL 505 (899)
T ss_pred cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHH
Confidence 34456777889999999999999999999887654 67789999999999999999999999998764 4567788889
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006630 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 295 (638)
...+...|++++|.+.|+++....+.+..++..+...+.+.|+.++|...+.++.+.+ +.+...+..++..+...|+++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 9999999999999999999988888899999999999999999999999999998875 556778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 296 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (638)
+|.++++.+.+.. +.+..+|..+...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|+++.
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 662 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL 662 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998763 4578899999999999999999999999998764 4467889999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455 (638)
Q Consensus 376 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (638)
+... .+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.+.|++++|...|+.+...+ |+..+
T Consensus 663 ~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~ 738 (899)
T TIGR02917 663 ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQN 738 (899)
T ss_pred hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchH
Confidence 8643 367889999999999999999999999998875 6677888899999999999999999999999874 55578
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
+..++..+...|++++|.+.++++.... +.+..++..+...|...|+.++|...|+++.+.. +++...++.++..+
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTH---PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLY 814 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 8889999999999999999999999876 4677888899999999999999999999999874 45788899999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHH
Q 006630 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEK 611 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~ 611 (638)
...|+ .+|+.+++++.+.. .-++.++..+...+...|++++|..+++++++.+|+++.++ .+|.+.|++++|.+
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK 892 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 99999 88999999998752 23456678888899999999999999999999999988774 68999999999999
Q ss_pred HHhhhh
Q 006630 612 AKKQVD 617 (638)
Q Consensus 612 ~~~~~~ 617 (638)
+++++.
T Consensus 893 ~~~~~~ 898 (899)
T TIGR02917 893 ELDKLL 898 (899)
T ss_pred HHHHHh
Confidence 999874
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.3e-23 Score=236.30 Aligned_cols=497 Identities=11% Similarity=0.009 Sum_probs=275.4
Q ss_pred ChhHHHHHHHHhccCchhHHHH---HHHhhhCCCCCCCHHHH----------------HHHHHHHHhcCChhHHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGYRY---YMWASKQPNYVHSYDVY----------------RALIKSLSKMRKFGAVWALMEE 163 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------------~~li~~~~~~~~~~~A~~~~~~ 163 (638)
+|.........+...|+...+. ..|....|+ +...+ -.+.+.+.+.|++++|.+.|+.
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~---~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~ 137 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD---SNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDK 137 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3445555555566667665443 334433333 32222 2334467778888888888888
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC-
Q 006630 164 MRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS- 242 (638)
Q Consensus 164 m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~- 242 (638)
+...+|.... .............|+.++|++.++++.+.. +.+...+..+...+...|+.++|+..|+++....+.+
T Consensus 138 ~l~~~p~~~~-la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 138 LFNGAPPELD-LAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred HccCCCCChH-HHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 8766543221 111111122224578888888888887763 4456677778888888888888888888874321100
Q ss_pred -------------------HHHHH----------------------------------HHHHHHHhcCCHHHHHHHHHHH
Q 006630 243 -------------------LRHFT----------------------------------SLLYGWCKEGKLVEAKYVLVQM 269 (638)
Q Consensus 243 -------------------~~~~~----------------------------------~li~~~~~~g~~~~A~~~~~~m 269 (638)
...+. .....+...|++++|+..|++.
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 00000 1123345567777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHhH------------HHHHHHHHhcCCHHHHHHHH
Q 006630 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSY------------TVLIQALCRMEKMEEANRAF 336 (638)
Q Consensus 270 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~------------~~li~~~~~~g~~~~A~~~~ 336 (638)
++.. +.+...+..+...+.+.|++++|...|++..+..... +...+ ......+.+.|++++|+..|
T Consensus 296 L~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 296 VRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 7653 3356667777777777777777777777776653221 11111 11234556677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 006630 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC-- 414 (638)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 414 (638)
+++.+.. +.+...+..+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+.....
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 7777653 234556666777777777777777777777764322 3444444444432 2334444444433221100
Q ss_pred ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 006630 415 ------VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488 (638)
Q Consensus 415 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 488 (638)
......+..+...+...|++++|+..|++..+.. +-+...+..+...|.+.|++++|...++++.+... .
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P---~ 527 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP---N 527 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---C
Confidence 0001122333444555666666666666666654 33445556666666666666666666666665431 1
Q ss_pred cHHHHHH--------------------------------------------HHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006630 489 QYGTLKA--------------------------------------------LLNSLLRAQKVEMAKDVWSCIVTKGCELN 524 (638)
Q Consensus 489 ~~~~~~~--------------------------------------------ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 524 (638)
+...+.. +.+.+...|+.++|..+++. .+.+
T Consensus 528 ~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~ 602 (1157)
T PRK11447 528 DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPS 602 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCC
Confidence 2111111 12223334444444444331 1223
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----ch
Q 006630 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KM 599 (638)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~ 599 (638)
...+..+...+.+.|++++|+..|++.++. .| +...+..+...+...|++++|++.++++++..|+++... .+
T Consensus 603 ~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 603 TRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 444555666666666666666666666654 23 345566666666666666666666666666666555442 45
Q ss_pred hhhhhhhhhHHHHHhhhhhh
Q 006630 600 YKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 600 y~~~g~~~~A~~~~~~~~~~ 619 (638)
|...|++++|.++++++...
T Consensus 681 ~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhh
Confidence 56666666666666665443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-22 Score=230.87 Aligned_cols=488 Identities=10% Similarity=0.024 Sum_probs=329.4
Q ss_pred hccCchhHHHHHHHhhhCCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 114 CGDAGNLGYRYYMWASKQPNYVHSYDV-YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192 (638)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 192 (638)
+...|+...+...+.....+.+++... ...+.......|++++|++.|+++....|. +...+..+...+...|+.++
T Consensus 122 l~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~--~~~~~~~LA~ll~~~g~~~e 199 (1157)
T PRK11447 122 LATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG--NTGLRNTLALLLFSSGRRDE 199 (1157)
T ss_pred HHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHccCCHHH
Confidence 455566666666555544444444321 111112223458888899999988888766 56677778888888888888
Q ss_pred HHHHHHhchhCCC------------------C--------------CCHHH---------------------HHHHHHHH
Q 006630 193 AIEVLDEMPKYGC------------------E--------------PDEFV---------------------FGCLLDAL 219 (638)
Q Consensus 193 A~~~~~~m~~~g~------------------~--------------~~~~~---------------------~~~li~~~ 219 (638)
|++.++++.+... . |+... ...+...+
T Consensus 200 Al~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~ 279 (1157)
T PRK11447 200 GFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAA 279 (1157)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 8888887654210 0 10000 00123456
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHH------------HHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVY------------NNLLS 286 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~------------~~ll~ 286 (638)
...|++++|+..|++.....|.+...+..+...|.+.|++++|+..|++..+..... ....| .....
T Consensus 280 ~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 280 VDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 678999999999999888778889999999999999999999999999988764221 11112 12244
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--------
Q 006630 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGF-------- 358 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-------- 358 (638)
.+.+.|++++|.+.|+++.+.. +.+...+..+...|...|++++|++.|+++.+.. +.+...+..+...|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHH
Confidence 6678899999999999998874 3356677888899999999999999999988763 22344444444333
Q ss_pred ----------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 359 ----------------------------------CKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 359 ----------------------------------~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
...|++++|++.|++..+..+. +...+..+...+.+.|++++|..
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 3445555555555555554322 33444455555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHhcCCHHHHHHH
Q 006630 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD---------SFVVMVHGFLGQGCLIEACEY 475 (638)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~li~~~~~~g~~~~A~~~ 475 (638)
.++.+.+.. +.+...+..+...+.+.|+.++|+..++.+......++.. .+..+...+...|+.++|+.+
T Consensus 517 ~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 555555432 2233333333334445555555555555543222111111 122344556677777777777
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
++ .. +++...+..+...+.+.|++++|+..|+++++.. +.+...+..++..|...|++++|++.++..++.
T Consensus 596 l~----~~---p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~- 666 (1157)
T PRK11447 596 LR----QQ---PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT- 666 (1157)
T ss_pred HH----hC---CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-
Confidence 65 12 3455567778889999999999999999999873 336788999999999999999999999988754
Q ss_pred CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHHHhhhh
Q 006630 556 VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 556 ~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~~~~~~ 617 (638)
.|+ ..++..+..++...|++++|.++++++++..|+++. .+ .+|...|++++|.+.|++..
T Consensus 667 -~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 667 -ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred -CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 454 556777888889999999999999999998877654 22 57889999999999999854
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-23 Score=206.12 Aligned_cols=438 Identities=13% Similarity=0.087 Sum_probs=363.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (638)
-..|.+-+.+.|++.+|.+.-...-..+|. +......+-..+....+.+...+--....+.. +.-..+|..+...+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t--~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT--NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC--cccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 345666777889999999988777777654 44444445566667777776665544444432 445688999999999
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHhHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN-NLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~g~~~~a~~ 299 (638)
..|++++|+.+++.+.+..|..+..|..+..++...|+.+.|.+.|.+.++. .|+..... .+....-..|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999999887889999999999999999999999999999876 56655443 34445556799999999
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD-VVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378 (638)
Q Consensus 300 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (638)
.+.+.++... -=.+.|+.|...+-..|+...|++.|++..+. .|+ ...|-.|...|...+.+++|+..+.+....
T Consensus 206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l- 281 (966)
T KOG4626|consen 206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL- 281 (966)
T ss_pred HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence 9988887622 23567889999999999999999999999876 454 468888999999999999999999888764
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 379 ILP-NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV 457 (638)
Q Consensus 379 ~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 457 (638)
.| ..+.+..+...|...|.++.|+..+++.++.. +--...|+.|..++-..|++.+|.+.|++..... +....+.+
T Consensus 282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~ 358 (966)
T KOG4626|consen 282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN 358 (966)
T ss_pred -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence 44 45677788888899999999999999998863 3346789999999999999999999999998875 45567899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLF 536 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~ 536 (638)
.|...|...|.+++|..+|....+-. +--....+.|...|-.+|++++|+..|+++++. .|+ ..+|+.+...|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~---p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVF---PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhC---hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHH
Confidence 99999999999999999999998875 234567888999999999999999999999884 666 568999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 537 SNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..|+.+.|++.+.+.+.. .|. ...++.|...|...|+..+|++.++.++++.|+.|.++
T Consensus 434 e~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~ 493 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY 493 (966)
T ss_pred HhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence 999999999999998854 675 45688999999999999999999999999999999985
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-21 Score=190.59 Aligned_cols=447 Identities=14% Similarity=0.094 Sum_probs=351.9
Q ss_pred HHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006630 107 TERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186 (638)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 186 (638)
...+-....+.|+...+..+-...-...+.+....-.+-.++.+..+++....--....+..|. -.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q--~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ--GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccch--HHHHHHHHHHHHHH
Confidence 3445556666777665554433221111222333334445677777777666554455555544 56789989999999
Q ss_pred cCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006630 187 ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL 266 (638)
Q Consensus 187 ~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 266 (638)
.|++++|+.+++.+++.. +.....|..+..++...|+.+.|...|.+..+-.|......+.+...+-..|++++|...+
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHH
Confidence 999999999999998873 3456789999999999999999999998887765555555666677777789999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 267 VQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN-ANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 267 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
.+.++.. +--.+.|..|...+-..|+...|++-|++..+. .|+ ...|-.|...|...+.+++|...+.+.... .
T Consensus 208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 9988763 233567899999999999999999999999875 444 457888999999999999999999988765 4
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 346 A-DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424 (638)
Q Consensus 346 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 424 (638)
| ..+.+..|...|...|..|-|+..+++.++..+. -...|+.+..++-..|++.+|.+.+....... +......+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 4 4567777888899999999999999999985332 36789999999999999999999999998763 5566788899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcC
Q 006630 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ 504 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g 504 (638)
...|...|.+++|..+|....+.. +--...++.|...|-++|++++|+..|++.++-. +.-...|+.+.+.|-..|
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~---P~fAda~~NmGnt~ke~g 436 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK---PTFADALSNMGNTYKEMG 436 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC---chHHHHHHhcchHHHHhh
Confidence 999999999999999999988753 3334688999999999999999999999999875 234668899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 006630 505 KVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLK 571 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~ 571 (638)
+++.|.+.+.+++.. .|. ....+.|...|...|+..+|++-|++.++. +||. ..|-.++.+..
T Consensus 437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQ 501 (966)
T ss_pred hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHH
Confidence 999999999999875 454 567899999999999999999999998854 6763 34555555443
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-20 Score=199.53 Aligned_cols=465 Identities=12% Similarity=-0.005 Sum_probs=308.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.+......|.+.|++++|+..|++.....| ++..|..+..+|.+.|++++|+..++..++.. +.+..++..+..+|
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 345566667777777777777777766554 34566667777777777777777777776653 33456677777777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
...|++++|+.-|..+....+.+......++.-+.. ..+........+.. +++...+..+.. +...........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence 777777777776655443222222222222221111 12222222222221 122222222222 221111111111
Q ss_pred HHHHHHHcCCCCCH-HhHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 300 LLKEMRRKGCDPNA-NSYTVLIQA---LCRMEKMEEANRAFVEMERSG-CEA-DVVTYTTLISGFCKSRKIDRCYEILDS 373 (638)
Q Consensus 300 ~~~~~~~~g~~~~~-~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (638)
-+....+ ..++. ..+..+... ....+++++|.+.|++..+.+ ..| +...|+.+...+...|++++|+..|++
T Consensus 279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111 11110 111111111 123478999999999998764 223 456788888889999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 374 MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453 (638)
Q Consensus 374 m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 453 (638)
..+.... +...|..+...+...|++++|...++.+.+.. +.+..++..+...|...|++++|...|++..+.+ +.+.
T Consensus 357 al~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 9885322 46678888888999999999999999998864 5567889999999999999999999999999876 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------H
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY------A 527 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~------~ 527 (638)
..+..+...+.+.|++++|+..|++.+... +.+...+..+...+...|++++|++.|++.+......+.. .
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~---P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF---PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 888889999999999999999999998865 3556788888999999999999999999998763221111 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhh
Q 006630 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGER 606 (638)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~ 606 (638)
++..+..+...|++++|..++++.+.. .|+ ...+..+...+...|++++|..++++++++.+.... ......+
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e----~~~a~~~ 584 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE----LVQAISY 584 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH----HHHHHHH
Confidence 122222334469999999999998865 454 456888999999999999999999999999876544 3344466
Q ss_pred hhHHHHHhhhhhhhhhhhhhhc
Q 006630 607 DLKEKAKKQVDGRKRRARQRRW 628 (638)
Q Consensus 607 ~~A~~~~~~~~~~~~~~~~~~~ 628 (638)
.+|.++...+.++.+.--.|=+
T Consensus 585 ~~a~~~~~~~~~~~~~~~~~~~ 606 (615)
T TIGR00990 585 AEATRTQIQVQEDYPVLASKLQ 606 (615)
T ss_pred HHHHHHHHHHHHHhHHHHHHHH
Confidence 6777776666666654444433
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-19 Score=196.01 Aligned_cols=490 Identities=12% Similarity=0.047 Sum_probs=311.5
Q ss_pred hHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH-
Q 006630 105 GLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR- 183 (638)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~- 183 (638)
.+...+...+...|+...+...........+.|...+..+..+ +++++|..+++++....|. +..++..+...
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~--n~~~~~~la~~~ 152 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI----PVEVKSVTTVEELLAQQKA--CDAVPTLRCRSE 152 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC--ChhHHHHHHHHh
Confidence 3444555666777777666655444333445556665555322 8888999999999988876 44455444444
Q ss_pred -------HHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 006630 184 -------FASARMVKKAIEVLDEMPKYGCEPDEFVFGCL-LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255 (638)
Q Consensus 184 -------~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (638)
|.+.+...+++ + .......|+..+.... ...|.+.|++++|+.++.++.+..+.+...+..|...|.+
T Consensus 153 ~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 153 VGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred hccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 55554444444 3 2222223445544444 8888888888888888888887767777777777777777
Q ss_pred -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC-CCHHhH-----------------
Q 006630 256 -EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD-PNANSY----------------- 316 (638)
Q Consensus 256 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~----------------- 316 (638)
.++ +++..+++. .++-+...+..+...|.+.|+.++|.++++++...-.. |+..++
T Consensus 229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 366 667666543 22356777778888888888888888877776533111 221111
Q ss_pred -------------HHHHHHHHhc---------------------------------------------------------
Q 006630 317 -------------TVLIQALCRM--------------------------------------------------------- 326 (638)
Q Consensus 317 -------------~~li~~~~~~--------------------------------------------------------- 326 (638)
-.++..+.+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~ 383 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLT 383 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 0112233333
Q ss_pred ------CCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCC---HHHHHHH----------------------HHH
Q 006630 327 ------EKMEEANRAFVEMERS--GCEADVVTYTTLISGFCKSRK---IDRCYEI----------------------LDS 373 (638)
Q Consensus 327 ------g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~---~~~A~~~----------------------~~~ 373 (638)
|+.++|.++|...... ...++....+-++..|.+.+. ..++..+ .+.
T Consensus 384 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (987)
T PRK09782 384 WQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPA 463 (987)
T ss_pred HHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHH
Confidence 3344444444443321 011122233344444444433 2222222 111
Q ss_pred HHHC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006630 374 MIQR-GI-LP--NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449 (638)
Q Consensus 374 m~~~-~~-~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (638)
.... +. ++ +...+..+..++.. ++.++|...+...... .|+......+...+...|++++|...|+++...
T Consensus 464 ~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-- 538 (987)
T PRK09782 464 IVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH-- 538 (987)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--
Confidence 1110 11 12 34455555555544 6777788877666654 355444334444556889999999999887654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 529 (638)
+|+...+..+...+.+.|++++|..+|++.+... ++....+..+...+...|++++|...++++++. .|+...|.
T Consensus 539 ~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 539 DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4555566777778888899999999998888765 234444444444555669999999999998875 56778888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhh
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRG 604 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g 604 (638)
.+..++.+.|++++|+..+++.++. .|+ ...+..+..++...|++++|+..++++++.+|+++.++ .+|...|
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lG 691 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLD 691 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 8888999999999999999988865 554 55677777788888999999999999999999988775 5788899
Q ss_pred hhhhHHHHHhhhhhhhh
Q 006630 605 ERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 605 ~~~~A~~~~~~~~~~~~ 621 (638)
++++|++.+++..+..+
T Consensus 692 d~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 692 DMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 99999998888654443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-21 Score=195.72 Aligned_cols=292 Identities=12% Similarity=0.138 Sum_probs=122.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHH
Q 006630 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN---ANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 331 (638)
..|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ..++..++..|.+.|++++
T Consensus 47 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3444444444444444432 12233444444444444444444444444443221111 1234445555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ----LTYLHIMLAHEKKEELEECVELMG 407 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~ 407 (638)
|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+...|++++|...++
T Consensus 126 A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 204 (389)
T PRK11788 126 AEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLK 204 (389)
T ss_pred HHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 555555555431 234445555555555555555555555555543322111 112223333333444444444444
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006630 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487 (638)
Q Consensus 408 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 487 (638)
++.+.. +.+...+..+...|.+.|++++|.++|+++.+.+.......++.++.+|...|++++|...++++.+..
T Consensus 205 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~---- 279 (389)
T PRK11788 205 KALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY---- 279 (389)
T ss_pred HHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 443321 122233333444444444444444444444433211112233444444444444444444444444432
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCC
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS---NGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~ 555 (638)
|+...+..+...+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 22223334444444444444444444444432 3444444444433332 234444444444444433
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-18 Score=186.63 Aligned_cols=425 Identities=12% Similarity=0.007 Sum_probs=302.7
Q ss_pred HhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 113 RCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKK 192 (638)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~ 192 (638)
.+...|+...+...+.... ...|+...|..+..+|.+.|++++|+..++.....+|. +...+..+..++...|++++
T Consensus 136 ~~~~~~~~~~Ai~~y~~al-~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAI-ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHcCCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCHHH
Confidence 4445566666666655433 23567888999999999999999999999999998765 67789999999999999999
Q ss_pred HHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 193 AIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 193 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
|+..|..+...+-..+.. ...++.-+.. ..+...........+++...+..+...+ ..........-+.+..+.
T Consensus 213 A~~~~~~~~~~~~~~~~~-~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQ-SAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred HHHHHHHHHHhCCCccHH-HHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhccccc
Confidence 999888766543122222 2222222222 2233333333333344444444443322 222222222222221111
Q ss_pred CCCCCH-HHHHHHHHH---HHHcCCHhHHHHHHHHHHHcC-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006630 273 GFEPDI-VVYNNLLSG---YAQMGKMTDAFELLKEMRRKG-CDP-NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346 (638)
Q Consensus 273 g~~p~~-~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 346 (638)
.+.. ..+..+... ....+++++|.+.|+...+.+ ..| +...+..+...+...|++++|+..|++..+. .|
T Consensus 287 --~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P 362 (615)
T TIGR00990 287 --DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DP 362 (615)
T ss_pred --ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC
Confidence 1111 111111111 123468999999999998765 223 4567888888999999999999999999876 44
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 347 D-VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425 (638)
Q Consensus 347 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 425 (638)
+ ...|..+...+...|++++|+..|++..+.... +...+..+...+...|++++|...|++..+.. +.+...+..+.
T Consensus 363 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 363 RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 4 668888899999999999999999999886433 67888889999999999999999999999875 55677788888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH---H-HHHHHHHHHH
Q 006630 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY---G-TLKALLNSLL 501 (638)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~---~-~~~~ll~~~~ 501 (638)
..+.+.|++++|+..|++..+.. +.+...|+.+...+...|++++|++.|++.+.......+.. . .+...+..+.
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 99999999999999999998764 55678999999999999999999999999988652111111 1 1112222233
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
..|++++|.+++++++.... .+...+..++..+.+.|++++|+.+|++..+.
T Consensus 520 ~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 520 WKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 46999999999999987642 24557889999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=192.49 Aligned_cols=306 Identities=16% Similarity=0.097 Sum_probs=183.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHHHHhC
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD---EFVFGCLLDALCKN 222 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~ 222 (638)
..+...|++++|+..|+++...+|. +..++..+...+...|++++|..+++.+...+..++ ..++..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPE--TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3445667777777777777766553 455666666667777777777777776665421111 23455666666666
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006630 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302 (638)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 302 (638)
|++++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666666554445555666666666666666666666666655432111100
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382 (638)
Q Consensus 303 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (638)
....+..+...+.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|+++|+++.+.+....
T Consensus 179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 248 (389)
T PRK11788 179 ---------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL 248 (389)
T ss_pred ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence 01123344455555566666666666555432 22344555555666666666666666666655432222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462 (638)
Q Consensus 383 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (638)
..++..++.++...|++++|...++.+.+. .|+...+..++..+.+.|++++|..+|+++.+. .|+...++.++..
T Consensus 249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~ 324 (389)
T PRK11788 249 SEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDY 324 (389)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHH
Confidence 344556666666667777777776666654 344455567777777788888888888777765 4777777777766
Q ss_pred HHh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 463 FLG---QGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 463 ~~~---~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
+.. .|+..+++.++++|.+.++.+.|+
T Consensus 325 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 325 HLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred hhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 654 457778888888887766644455
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-19 Score=193.51 Aligned_cols=334 Identities=9% Similarity=0.036 Sum_probs=167.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
.+..+.+.|++++|..+++....... -+...+..++.++...|++++|.+.++++.+... .+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCC
Confidence 34444455555555555555554431 1222333333444445555555555555554421 133444555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
+++|...|+++.... +.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 555555555555431 2234445555555555555555555555554432221 1122112 224455555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCC
Q 006630 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGL 484 (638)
Q Consensus 409 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~ 484 (638)
+.+....++...+..+...+.+.|++++|+..|+++.+.+ +.+...+..+...+...|++++ |+..|+++....
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~- 280 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN- 280 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence 5443222223333333445555666666666666655543 3344555555566666666553 556666665544
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-H
Q 006630 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-F 563 (638)
Q Consensus 485 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~ 563 (638)
+.+..++..+...+...|++++|...++++...... +...+..+..+|.+.|++++|+..|+++.+. .|+... +
T Consensus 281 --P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~ 355 (656)
T PRK15174 281 --SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWN 355 (656)
T ss_pred --CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHH
Confidence 234445555555666666666666666666554211 3344555556666666666666666665543 343322 2
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
..+..++...|+.++|...++++++..|++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 2234455556666666666666666666543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-19 Score=197.52 Aligned_cols=412 Identities=12% Similarity=0.020 Sum_probs=268.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006630 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252 (638)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 252 (638)
++....-.+......|+.++|++++....... +.+...+..+..++.+.|++++|..+|++.....|.+...+..++..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44444445555566666666666666655421 34445566666666666666666666666665555566666666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006630 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (638)
+...|++++|...+++..+.. +.+.. +..+..++...|+.++|...++++.+.... +...+..+...+...|..+.|
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~A 169 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPA 169 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHH
Confidence 666666666666666666552 33344 656666666666666666666666665322 444445555666666666666
Q ss_pred HHHHHHHHHcCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHH
Q 006630 333 NRAFVEMERSGCEADV------VTYTTLISGFC-----KSRKI---DRCYEILDSMIQR-GILPNQL-TY----LHIMLA 392 (638)
Q Consensus 333 ~~~~~~m~~~g~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-~~~p~~~-t~----~~ll~~ 392 (638)
+..++.... .|+. .....++..+. ..+++ ++|++.++.+.+. ...|+.. .+ ...+.+
T Consensus 170 l~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 170 LGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 666655442 1211 01111222221 12233 6788888888754 2222221 11 111334
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcC
Q 006630 393 HEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG----TDSFVVMVHGFLGQG 467 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g 467 (638)
+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++.+.+ +.+ ...+..+..++...|
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcc
Confidence 55668888999999888876522 222 22224667888999999999999887643 111 345666677788899
Q ss_pred CHHHHHHHHHHHHhCCC---------CCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 468 CLIEACEYFKEMVGRGL---------LSAPQY---GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~---------~~~p~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
++++|+.+++.+..... ...|+. ..+..+...+...|++++|+++++++.... +-+...+..++..+
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~ 403 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVL 403 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 99999999998887631 012332 244566778889999999999999998863 33577889999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 536 FSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...|++++|++.+++.++. .|+ ...+......+...|++++|+..++++++..|+++.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 404 QARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999999998865 576 4556677778888999999999999999999999976
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-19 Score=192.77 Aligned_cols=332 Identities=10% Similarity=0.024 Sum_probs=208.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
...++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...|+++....|.+...|..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 3445666677788888888887776653 333455555666666778888888888887777777777777777888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (638)
|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus 124 g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 124 KQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA 200 (656)
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence 88888888888877653 334566677777777777777777777766654322 22233222 2366677777777777
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHC
Q 006630 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE----CVELMGEMRKI 412 (638)
Q Consensus 337 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~~~~~ 412 (638)
+.+.+....++...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++ |...++...+.
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l 279 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF 279 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence 77665432233344444556666777777777777777665322 45555556666666666664 56666666554
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH-H
Q 006630 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY-G 491 (638)
Q Consensus 413 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~ 491 (638)
. +.+...+..+...+.+.|++++|...+++..+.. +.+...+..+...+.+.|++++|+..|+++.... |+. .
T Consensus 280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~----P~~~~ 353 (656)
T PRK15174 280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK----GVTSK 353 (656)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----ccchH
Confidence 3 3345566666666666666666666666666553 3344555556666666666666666666666553 222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.+..+..++...|+.++|...|+++.+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2223344556666666666666666554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-18 Score=189.78 Aligned_cols=479 Identities=10% Similarity=0.015 Sum_probs=330.3
Q ss_pred CchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 117 AGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEV 196 (638)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 196 (638)
.|+...++..+.....-.+.+..++..|...|.+.|++++|+..+++..+.+|. +...+..+ . ..++.++|..+
T Consensus 57 ~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~--n~~~~~~L-a---~i~~~~kA~~~ 130 (987)
T PRK09782 57 NNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG--DARLERSL-A---AIPVEVKSVTT 130 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHHHH-H---HhccChhHHHH
Confidence 366655555544333333556889999999999999999999999999998763 54444443 2 22899999999
Q ss_pred HHhchhCCCCCCHHHHHHHHHH--------HHhCCCHHHHHHHHHHHhcc-CCCCHHHHH-HHHHHHHhcCCHHHHHHHH
Q 006630 197 LDEMPKYGCEPDEFVFGCLLDA--------LCKNSSVKEAAKLFDEMRER-FKPSLRHFT-SLLYGWCKEGKLVEAKYVL 266 (638)
Q Consensus 197 ~~~m~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~-~li~~~~~~g~~~~A~~~~ 266 (638)
++++.+.. +-+..++..+... |.+.+ +|.+.++ .... ..|+..+.. .+...|.+.|++++|++++
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 99998874 3445666666665 66664 4444444 2211 222344444 4499999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHH-cCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 267 VQMKDAGFEPDIVVYNNLLSGYAQ-MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 267 ~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
.++.+.+ +.+..-...|..+|.. .++ +.+..+++. .+.-+...+..+++.|.+.|+.++|.+++.++...-..
T Consensus 206 ~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~ 279 (987)
T PRK09782 206 NEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTT 279 (987)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccC
Confidence 9999987 4456667777778887 466 777777553 23358889999999999999999999998876533111
Q ss_pred -CCHHHHHH------------------------------HHHH-------------------------------------
Q 006630 346 -ADVVTYTT------------------------------LISG------------------------------------- 357 (638)
Q Consensus 346 -~~~~~~~~------------------------------li~~------------------------------------- 357 (638)
|+..+|-- ++..
T Consensus 280 ~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 280 DAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKA 359 (987)
T ss_pred CCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchh
Confidence 11111100 0111
Q ss_pred --------------------------HHhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCC---HHHHHHH-
Q 006630 358 --------------------------FCKSRKIDRCYEILDSMIQR-G-ILPNQLTYLHIMLAHEKKEE---LEECVEL- 405 (638)
Q Consensus 358 --------------------------~~~~g~~~~A~~~~~~m~~~-~-~~p~~~t~~~ll~~~~~~g~---~~~a~~~- 405 (638)
..+.|+.++|..+|+..... + -.++......++..+.+.+. ..++..+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 12334555555555555441 1 12233333355666655544 2222222
Q ss_pred ---------------------HHHHHHC-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 406 ---------------------MGEMRKI-GC-VP--DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 406 ---------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
+...... +. ++ +...|..+..++.. ++.++|...|.+..... |+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHH
Confidence 1111111 11 33 56677777777766 78889999888887653 6654444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (638)
..+...|++++|+..|+++.... |....+..+..++.+.|+.++|...+++.++.. +++...+..+...+.+.|+
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~----p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr 591 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHD----MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQ 591 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccC----CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCC
Confidence 55578999999999999986553 444556677788899999999999999998863 2233333344445556799
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
+++|+..+++.++. .|+...|..+..++.+.|++++|+..++++++++|+++.++ .++...|++++|.+++++.
T Consensus 592 ~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 592 PELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999865 67888899999999999999999999999999999999876 4788899999999999987
Q ss_pred hhhhhh
Q 006630 617 DGRKRR 622 (638)
Q Consensus 617 ~~~~~~ 622 (638)
.+..+.
T Consensus 670 L~l~P~ 675 (987)
T PRK09782 670 HKGLPD 675 (987)
T ss_pred HHhCCC
Confidence 665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-18 Score=182.95 Aligned_cols=445 Identities=11% Similarity=0.010 Sum_probs=336.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 222 (638)
.-+-...+.|+++.|+..|++..+.+|. +.....-++..+...|+.++|+..+++.... -+........+...|...
T Consensus 39 ~~aii~~r~Gd~~~Al~~L~qaL~~~P~--~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 39 DSLIIRARAGDTAPVLDYLQEESKAGPL--QSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhhCcc--chhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence 3444667999999999999999998876 3222226788888899999999999998821 123344444556788899
Q ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 006630 223 SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLK 302 (638)
Q Consensus 223 g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 302 (638)
|++++|+++|+++.+..|.+...+..++..|...++.++|++.++++... .|+...+..++..+...++..+|++.++
T Consensus 116 gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 99999999999999998989999999999999999999999999999876 5666666555555555667767999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH------HHHHHHH-H----hcC---CHHHHH
Q 006630 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY------TTLISGF-C----KSR---KIDRCY 368 (638)
Q Consensus 303 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~------~~li~~~-~----~~g---~~~~A~ 368 (638)
++.+.. +.+...+..+.....+.|-...|.++..+-...- .+....+ ..+++.- . ... -.+.|+
T Consensus 194 kll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~al 271 (822)
T PRK14574 194 EAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKAL 271 (822)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence 999884 3367788888999999999999988776533210 1111111 1111110 0 111 234566
Q ss_pred HHHHHHHHC-CCCCCH-H----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 369 EILDSMIQR-GILPNQ-L----TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442 (638)
Q Consensus 369 ~~~~~m~~~-~~~p~~-~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (638)
.-++.+... +..|.. . ...-.+-++...+++.++++.++.+...+.+....+-..+.++|...+++++|+.+|.
T Consensus 272 a~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~ 351 (822)
T PRK14574 272 ADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILS 351 (822)
T ss_pred HHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666653 222322 2 2223456788899999999999999988866566788899999999999999999999
Q ss_pred HHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCCcHHHH-HHHHHHHHHcCC
Q 006630 443 EMEAAS-----LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-----------LSAPQYGTL-KALLNSLLRAQK 505 (638)
Q Consensus 443 ~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-----------~~~p~~~~~-~~ll~~~~~~g~ 505 (638)
.+.... .+++......|.-+|...+++++|..+++++.+... .+.|+...+ ..++..+...|+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gd 431 (822)
T PRK14574 352 SLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALND 431 (822)
T ss_pred HHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCC
Confidence 986542 133444567899999999999999999999987422 123444433 345667889999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
+.+|++.++.+.... +-|...+..+.+.+...|++.+|.+.++.+... .|+ ..+....+.++...+++++|+.+.+
T Consensus 432 l~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 432 LPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999998764 338888999999999999999999999776644 665 4567788888889999999999999
Q ss_pred HHHHHHHhccccc
Q 006630 585 KVRKMAAERQITF 597 (638)
Q Consensus 585 ~~~~~~p~~~~~~ 597 (638)
++++..|+++..-
T Consensus 509 ~l~~~~Pe~~~~~ 521 (822)
T PRK14574 509 DVISRSPEDIPSQ 521 (822)
T ss_pred HHHhhCCCchhHH
Confidence 9999999999663
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-18 Score=179.17 Aligned_cols=478 Identities=15% Similarity=0.133 Sum_probs=371.8
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH--H
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQ-LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE--F 210 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~--~ 210 (638)
...++++.+.|.+.|.-.|+++.++.+...+...... ..-...|-.+.++|-..|++++|...|.+..+. .+|. .
T Consensus 266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l 343 (1018)
T KOG2002|consen 266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVL 343 (1018)
T ss_pred cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccc
Confidence 4678889999999999999999999999888764311 123456788999999999999999999887765 3444 4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG----KLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 286 (638)
.+.-|..+|.+.|+++.+...|+.+.+..|.+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+..
T Consensus 344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laq 422 (1018)
T KOG2002|consen 344 PLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQ 422 (1018)
T ss_pred cccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 55678899999999999999999999988999999999999998886 5677777777777654 557778887777
Q ss_pred HHHHcCCHhHHHHHHHHH----HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHH
Q 006630 287 GYAQMGKMTDAFELLKEM----RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS---GCEADV------VTYTT 353 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~~~~------~~~~~ 353 (638)
.+.... ...++..+... ...+..+.....|.+...+...|+++.|...|...... ...+|. .+-..
T Consensus 423 l~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN 501 (1018)
T KOG2002|consen 423 LLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN 501 (1018)
T ss_pred HHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence 775544 43346666544 34555677889999999999999999999999987654 122333 22233
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006630 354 LISGFCKSRKIDRCYEILDSMIQRGILPNQ-LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432 (638)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 432 (638)
+...+-..++.+.|.+.|..+.+.. |+- ..|..++......+...+|...+..+.+.+ ..++..++.+...|.+..
T Consensus 502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~ 578 (1018)
T KOG2002|consen 502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKS 578 (1018)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhh
Confidence 4555667789999999999998863 333 344444433344577889999999888764 566777777788999999
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAAS-LSPGTDSFVVMVHGFLG------------QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 499 (638)
.+..|.+-|+.+.+.- ..+|..+...|.+.|.+ .+..++|+++|.+.++.. +-+...-+.+.-.
T Consensus 579 ~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d---pkN~yAANGIgiV 655 (1018)
T KOG2002|consen 579 EWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND---PKNMYAANGIGIV 655 (1018)
T ss_pred hhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC---cchhhhccchhhh
Confidence 9999999887776542 23566566666665542 345788999999999887 4677777888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA-DVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
++..|++.+|..+|.++.+... -+..+|-.+.++|...|++..|++.|+...+. .-..+..+...|..++...|.+.+
T Consensus 656 LA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 656 LAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 9999999999999999988732 25678999999999999999999999987763 335577889999999999999999
Q ss_pred HHHHHHHHHHHHHhccccc-----------------------chhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 579 AAEITEKVRKMAAERQITF-----------------------KMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~~~~-----------------------~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
|.+.+.++....|.++.+. .+....++.++|.++|+.+.....+
T Consensus 735 ak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 735 AKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999862 2456668888899999887766655
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-17 Score=183.11 Aligned_cols=417 Identities=10% Similarity=-0.010 Sum_probs=211.6
Q ss_pred CCChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHH
Q 006630 101 VLRPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVIL 180 (638)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l 180 (638)
++++..+...+....-.|+...+...|....+..+.+...+..+...+.+.|++++|..+|++.....|. +...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ--NDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence 3556666666666555666655555565544323445555666666777777777777777776666554 44455566
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
...+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..|.+...+..+...+...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Confidence 666666777777777777666552 33444 6666666666677777777777766666666666666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH---HH
Q 006630 261 EAKYVLVQMKDAGFEPDI------VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM---EE 331 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~---~~ 331 (638)
+|++.++.... .|+. .....++......+ ....+++ ++
T Consensus 168 ~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad~ 214 (765)
T PRK10049 168 PALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIADR 214 (765)
T ss_pred HHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHHH
Confidence 66666655442 2221 00111111111000 0111112 34
Q ss_pred HHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 332 ANRAFVEMERS-GCEADVV-TY----TTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 332 A~~~~~~m~~~-g~~~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+..++...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 44444444422 0111110 00 00012223445555555555555444321 221 11112344455555555555
Q ss_pred HHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCC---HHHHHHHHHHHHhcC
Q 006630 405 LMGEMRKIGCVP---DVSNYNVVIRLACKLGELKEAVNVWNEMEAAS-----------LSPG---TDSFVVMVHGFLGQG 467 (638)
Q Consensus 405 ~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~---~~~~~~li~~~~~~g 467 (638)
+++.+.+..... .......+..++...|++++|..+++.+.+.. -.|+ ...+..+...+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 555544321000 01223333444455555555555555554431 0122 123444555566666
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHH
Q 006630 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 546 (638)
+.++|+++++++.... +.+...+..+...+...|++++|++.+++++.. .|+ ...+...+..+...|++++|..
T Consensus 374 ~~~eA~~~l~~al~~~---P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 374 DLPQAEMRARELAYNA---PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred CHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 6666666666666554 234455555566666666666666666666654 233 3444455555666666666666
Q ss_pred HHHHHHhCCCCCCHHH
Q 006630 547 YCLDMMDADVMPQPDT 562 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t 562 (638)
+++++++. .|+...
T Consensus 449 ~~~~ll~~--~Pd~~~ 462 (765)
T PRK10049 449 LTDDVVAR--EPQDPG 462 (765)
T ss_pred HHHHHHHh--CCCCHH
Confidence 66666643 444433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-16 Score=164.25 Aligned_cols=456 Identities=14% Similarity=0.090 Sum_probs=295.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCC--CCHHHHHHHHHHHHhCCCHHHHHHH
Q 006630 154 FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCE--PDEFVFGCLLDALCKNSSVKEAAKL 231 (638)
Q Consensus 154 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~ 231 (638)
+..+..++...-..++. ++...+.|...|.-.|++..+..+...+...... .-...|.-+..+|-..|++++|...
T Consensus 252 ~~~~~~ll~~ay~~n~~--nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y 329 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNE--NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY 329 (1018)
T ss_pred HHHHHHHHHHHHhhcCC--CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 44555555555555443 4555666666666667777777766666544211 1123456666777777777777777
Q ss_pred HHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHhHHHHHHHHHHH
Q 006630 232 FDEMRERFKPS-LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG----KMTDAFELLKEMRR 306 (638)
Q Consensus 232 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~ 306 (638)
|.+.....+.+ +..+-.|...|.+.|+++++...|+...+.. +-+..|...|...|+..+ ..+.|..++.+..+
T Consensus 330 Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~ 408 (1018)
T KOG2002|consen 330 YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLE 408 (1018)
T ss_pred HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHh
Confidence 76665543444 4555566777777777777777777776653 334455556666665554 34556666666555
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 006630 307 KGCDPNANSYTVLIQALCRMEKMEEANRAFVEME----RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR---GI 379 (638)
Q Consensus 307 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~ 379 (638)
.- +.|...|-.+..+|.... ...++.+|.... ..+-.+-+...|.+...+...|++.+|...|...... ..
T Consensus 409 ~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~ 486 (1018)
T KOG2002|consen 409 QT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVA 486 (1018)
T ss_pred cc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhc
Confidence 42 335666666666555433 333355554432 3344566677777777778888888888888777654 12
Q ss_pred CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 380 LPNQ------LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT 453 (638)
Q Consensus 380 ~p~~------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 453 (638)
.+|. .+-..+....-..++.+.|.+.|..+.+.. +.-+..|-.+..+....+...+|...++.....+ ..++
T Consensus 487 n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np 564 (1018)
T KOG2002|consen 487 NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNP 564 (1018)
T ss_pred CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCc
Confidence 2222 223344555566677888888888877652 2223333333333334467778888888877765 5666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHcCC
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL------------RAQKVEMAKDVWSCIVTKGC 521 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~------------~~g~~~~A~~~~~~~~~~~~ 521 (638)
..+..+...+.....+..|.+-|......... .+|..+..+|.+.|. ..+..+.|.++|.++++..
T Consensus 565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d- 642 (1018)
T KOG2002|consen 565 NARSLLGNLHLKKSEWKPAKKKFETILKKTST-KTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND- 642 (1018)
T ss_pred HHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-CCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-
Confidence 77777777888877788888777666654332 367777777777665 2345778899999888764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH-hc-cccc--
Q 006630 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA-ER-QITF-- 597 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p-~~-~~~~-- 597 (638)
+.|...-|-+.-+++..|++.+|..+|.+..+.. .-+..+|.++...|...|++-.|+++|+..++..- ++ +..+
T Consensus 643 pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 3367777888888999999999999999987753 33556789999999999999999999999987654 32 2232
Q ss_pred --chhhhhhhhhhHHHHHhhhhhh
Q 006630 598 --KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 598 --~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
.++...|+|.+|.+...+....
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6788889999998876654433
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-16 Score=167.70 Aligned_cols=428 Identities=13% Similarity=0.052 Sum_probs=315.7
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDE--FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
...+.|+++.|+..|++..+. .|+. .++ .++..+...|+.++|+..+++.....+........+...|...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 346899999999999999876 4553 344 88888889999999999999988433344444555577899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999885 445677778889999999999999999999876 5566666555555555677767999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHH-HH----HhcCC---HHHHHHHH
Q 006630 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY------LHIML-AH----EKKEE---LEECVELM 406 (638)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~------~~ll~-~~----~~~g~---~~~a~~~~ 406 (638)
+.. +-+...+..+..++.+.|-...|.++..+-..- +.+...-. ...+. +. ..... .+.|+.-+
T Consensus 197 ~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 884 335777788889999999999998776653211 11111111 11111 00 01122 34455555
Q ss_pred HHHHHC-C-CCCCHHHH-H---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 407 GEMRKI-G-CVPDVSNY-N---VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 407 ~~~~~~-~-~~~~~~~~-~---~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
+.+... + .++....| . -.+-++.+.|++.++++.|+.+...+.+.-..+-..+.++|...+++++|+.+|+++.
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~ 354 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLY 354 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 555442 1 13222222 2 2344678899999999999999987744233467788999999999999999999997
Q ss_pred hCCCC---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHHHccCCHHH
Q 006630 481 GRGLL---SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-----------ELN--V-YAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 481 ~~~~~---~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~--~-~~~~~li~~~~~~g~~~~ 543 (638)
..... .+++......|.-++...+++++|..+++.+.+... .|+ - ..+..++..+...|++.+
T Consensus 355 ~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 355 YSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred hccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 75311 123444457889999999999999999999987411 122 2 233456777889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
|.+.++++.... +-|......+...+...|+...|++.++.+..++|++..+. ..+-..|+|++|.++.+++.+.
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 999999998652 44778899999999999999999999999999999987763 6788889999999988775443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.1e-17 Score=153.47 Aligned_cols=485 Identities=14% Similarity=0.098 Sum_probs=310.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHhchhCCCCCC------HHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVF-VILMRRFASARMVKKAIEVLDEMPKYGCEPD------EFV 211 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~------~~~ 211 (638)
.+...|..-|..+....+|+..|+-+.+.. ..++...+ ..+...+.+.+.+.+|++.++-.+.. .|+ ..+
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~riki 278 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIKI 278 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHHH
Confidence 344455666777777788888888776643 22444332 23455677788899999998876654 232 234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--------HH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY--------NN 283 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~--------~~ 283 (638)
.+.+.-.+.+.|++++|+..|+...+. .||..+--.|+-++.-.|+.++..+.|.+|+..-..||..-| ..
T Consensus 279 l~nigvtfiq~gqy~dainsfdh~m~~-~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 279 LNNIGVTFIQAGQYDDAINSFDHCMEE-APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred HhhcCeeEEecccchhhHhhHHHHHHh-CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 555556677889999999999987765 345544444444455578889999999999886556654422 12
Q ss_pred HHHHHHHc---------C--CHhHHHHHHHHHHHcCCCCCHHh-------------HHH--------HHHHHHhcCCHHH
Q 006630 284 LLSGYAQM---------G--KMTDAFELLKEMRRKGCDPNANS-------------YTV--------LIQALCRMEKMEE 331 (638)
Q Consensus 284 ll~~~~~~---------g--~~~~a~~~~~~~~~~g~~~~~~~-------------~~~--------li~~~~~~g~~~~ 331 (638)
|+.--.+. . +-+.++-.--+++.--+.|+-.. +.. -..-|.+.|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 22221111 1 11111111112221112222110 000 1224678889999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISG-FCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~-~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
|.+++.-+.+..-+.-...-+.|-.. |.+ -.++.+|-.+-+........ +....+.-.+.....|++++|.+.+++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99888887754222112222222222 222 33566777666665543221 3333333333445679999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 410 RKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 410 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
....-.-....||.=+ .+-..|++++|++.|-++... +..+......+...|....+..+|++++-+....- +.+
T Consensus 517 l~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sli---p~d 591 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLI---PND 591 (840)
T ss_pred HcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---CCC
Confidence 8654222333333322 467789999999999877543 23456778888899999999999999987765432 567
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 569 (638)
+..+..|...|-+.|+-..|.+.+-.--+. ++-+..+..-|..-|....-+++|+.+|++.. -+.|+..-|..++..
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHH
Confidence 888899999999999999998887655444 45567777777788888889999999999875 358999999998887
Q ss_pred H-HhhcCHHHHHHHHHHHHHHHHhcccccc----hhh---------hhhhhhhHHHHHhhhhhhhhhhhhhhccCCccCc
Q 006630 570 L-KKLYNRQIAAEITEKVRKMAAERQITFK----MYK---------RRGERDLKEKAKKQVDGRKRRARQRRWGGGRSKA 635 (638)
Q Consensus 570 ~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~y~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 635 (638)
| ++.|++++|.+.++.+-...|++-..+. +.. ...+.++++++.+--..+....++.+.+||+|+-
T Consensus 669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~klek~eki~eir~qresd~~qgk~~s~~s~~ 748 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADKLEKAEKIKEIREQRESDIKQGKDGSAGSRG 748 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCCCC
Confidence 7 5679999999999999999999887642 221 2233444444443333333345566688888875
Q ss_pred c
Q 006630 636 K 636 (638)
Q Consensus 636 ~ 636 (638)
.
T Consensus 749 ~ 749 (840)
T KOG2003|consen 749 K 749 (840)
T ss_pred C
Confidence 4
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-14 Score=134.82 Aligned_cols=453 Identities=16% Similarity=0.219 Sum_probs=310.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hcCCHH-HHHHHHHhchhCCCCCCHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA--SARMVK-KAIEVLDEMPKYGCEPDEFVFG 213 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~~~~~-~A~~~~~~m~~~g~~~~~~~~~ 213 (638)
.+++-|.|+.+. ..|...++.-+|+.|...+. ..++..-..|++.-+ ...++- .-.+.|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~-~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKMI-SSREVKDSCILYERMRSENV-DVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW- 190 (625)
T ss_pred hhcchhHHHHHH-hhcccchhHHHHHHHHhcCC-CCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-
Confidence 445667777765 45788899999999998874 356666555554332 222222 2234555666655 3333333
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
+.|.+.+ -+|+.. |....++.+||.++|+--..+.|.+++++-.....+.+..+||.+|.+-.-
T Consensus 191 -------K~G~vAd--L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--- 254 (625)
T KOG4422|consen 191 -------KSGAVAD--LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--- 254 (625)
T ss_pred -------ccccHHH--HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh---
Confidence 4555543 334433 347889999999999999999999999999988789999999999886543
Q ss_pred HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-HH
Q 006630 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA----NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR-CY 368 (638)
Q Consensus 294 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~ 368 (638)
....+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|++|...+|..+|..+++.++..+ |.
T Consensus 255 -~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 255 -SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred -hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 33488999999999999999999999999999987764 5677889999999999999999999999888754 45
Q ss_pred HHHHHHHHC----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHHcCC
Q 006630 369 EILDSMIQR----GILP----NQLTYLHIMLAHEKKEELEECVELMGEMRKIG----CVPD---VSNYNVVIRLACKLGE 433 (638)
Q Consensus 369 ~~~~~m~~~----~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~ 433 (638)
.++.++... .++| |...|...+..|.+..+.+.|.++...+.... +.|+ ..-|..+....|+...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 2222 55677888999999999999999887765421 2233 2335667778888899
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcC-CH------
Q 006630 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ-KV------ 506 (638)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g-~~------ 506 (638)
.+.-...|+.|.-.-.-|+..+...++.+..-.|+++-.-+++.+++..|. .-+......++.-+++.. ..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh--t~r~~l~eeil~~L~~~k~hp~tp~r~ 491 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH--TFRSDLREEILMLLARDKLHPLTPERE 491 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHhcCCCCCCChHHH
Confidence 999999999998776678888888888888888988888888888887774 122222222333333222 00
Q ss_pred --HH-----HHHHH-------HHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-C---CCCHHHHHHHHH
Q 006630 507 --EM-----AKDVW-------SCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-V---MPQPDTFAKLMR 568 (638)
Q Consensus 507 --~~-----A~~~~-------~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~---~p~~~t~~~ll~ 568 (638)
.. |..++ .++.+ ........+...-.+.+.|..++|.+++.-+.+.+ - .|.-....-+++
T Consensus 492 Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d 569 (625)
T KOG4422|consen 492 QLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMD 569 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHH
Confidence 00 11111 11222 23345566777788999999999999998886533 2 233333456677
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccccc--chhhhhhhhhhHHHHHh
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQITF--KMYKRRGERDLKEKAKK 614 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~y~~~g~~~~A~~~~~ 614 (638)
......+.-.|...++.+...+-..-+.+ .+...+.-.++-.++..
T Consensus 570 ~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 570 SAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 77777899999999988866553322211 34444444444444433
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-13 Score=127.50 Aligned_cols=495 Identities=11% Similarity=0.100 Sum_probs=368.4
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006630 121 GYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEM 200 (638)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 200 (638)
.-+...|.....+...+...|-..+.+=.++++...|..++++....-|. -...|-.-+-.--..|++..|.++|++-
T Consensus 90 ~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR--VdqlWyKY~ymEE~LgNi~gaRqiferW 167 (677)
T KOG1915|consen 90 QRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR--VDQLWYKYIYMEEMLGNIAGARQIFERW 167 (677)
T ss_pred HHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch--HHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 34455566554455667778888899999999999999999998876554 3345655565556789999999999998
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-CCCCH
Q 006630 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-G-FEPDI 278 (638)
Q Consensus 201 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~ 278 (638)
.+. .|+...|++.|+.-.+-+.++.|..++++..-- .|++.+|--....-.++|+...|..+|....+. | -..+.
T Consensus 168 ~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 168 MEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 776 899999999999999999999999999998754 489999999999999999999999999988763 1 01122
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHH--------HHHHHHcCCCCCH
Q 006630 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--ANSYTVLIQALCRMEKMEEANRA--------FVEMERSGCEADV 348 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~g~~~~~ 348 (638)
..+++....-.+...++.|.-+|+..++. ++.+ ...|..+...=-+-|+....... ++.+...+ +-|-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nY 322 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCc
Confidence 33444444444567888899999888876 3323 44555555554555664443332 34444443 5577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ-------LTYLHIMLAH---EKKEELEECVELMGEMRKIGCVPDV 418 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~ 418 (638)
.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+=-+| ....+.+.+.++++..++. ++...
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence 88888888888899999999999999985 44421 1222222222 3578899999999999884 45666
Q ss_pred HHHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 419 SNYNVVIRLA----CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 419 ~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
.||.-+--+| .++.++..|.+++...+- ..|-..+|-..|..-.+.+.++....+|+..++.+ |.+..+|.
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~---Pe~c~~W~ 475 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS---PENCYAWS 475 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---hHhhHHHH
Confidence 6666554444 467899999999988774 46888899999999999999999999999999988 57788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK-- 571 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-- 571 (638)
.....-...|+.+.|+.+|+.++... ..--...|.+.|+.-...|.++.|..+|+++++. .+...+|.++..--.
T Consensus 476 kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~ 553 (677)
T KOG1915|consen 476 KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASA 553 (677)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccc
Confidence 88888888999999999999998762 2223567888899889999999999999999875 445557777665433
Q ss_pred ---hhc-----------CHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHHHhhhhhhhhhhhhhh
Q 006630 572 ---KLY-----------NRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKAKKQVDGRKRRARQRR 627 (638)
Q Consensus 572 ---~~g-----------~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~ 627 (638)
+.+ +...|+.+++++.....+... ++ ++-...|...+...+-.++..+-||-++.+
T Consensus 554 ~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr~~~ 633 (677)
T KOG1915|consen 554 SEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRRKIQ 633 (677)
T ss_pred cccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhhhhh
Confidence 334 677899999998876544332 12 566677887788888888777776665444
Q ss_pred ccCC
Q 006630 628 WGGG 631 (638)
Q Consensus 628 ~~~~ 631 (638)
..-|
T Consensus 634 ~edG 637 (677)
T KOG1915|consen 634 REDG 637 (677)
T ss_pred cccC
Confidence 4333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-13 Score=136.53 Aligned_cols=462 Identities=11% Similarity=0.096 Sum_probs=258.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.|+..|.+.+ .....++|+.++.+..+.-|. +.. |.-++++..-++.|..+++...+. ++.+..+|.+
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAveccp~--s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWit 445 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVECCPQ--SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWIT 445 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHhccc--hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHH
Confidence 34555555433 334455566666666655433 222 333444555566666666665543 4555666655
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHH
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRE-----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD--IVVYNNLLSG 287 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~ 287 (638)
-...--..|+.+...++.++-.. ++..+...|-.=...+-..|..--+..+....+..|+.-. ..||+.-...
T Consensus 446 aa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~ 525 (913)
T KOG0495|consen 446 AAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQS 525 (913)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHH
Confidence 55555556666666666554221 2333444444444444444444444444444444333211 2244444444
Q ss_pred HHHc----------------------------------CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006630 288 YAQM----------------------------------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333 (638)
Q Consensus 288 ~~~~----------------------------------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (638)
|.+. |..+.-..+|++.... ++-....|.....-+-..|++..|.
T Consensus 526 ~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred HHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHH
Confidence 4444 4445555555544443 2223334444444455556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413 (638)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 413 (638)
.++.+..+.. +.+...|-+-+.....+..++.|..+|.+.... .|+...|.--+...--.++.++|.+++++..+.
T Consensus 605 ~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~- 680 (913)
T KOG0495|consen 605 VILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS- 680 (913)
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-
Confidence 6666655543 224455555555556666666666666655543 334444444444444455666666666665554
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHH
Q 006630 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL 493 (638)
Q Consensus 414 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~ 493 (638)
++.-...|-.+...+-+.++++.|...|..-.+. ++..+..|..|...-.+.|.+..|..+++...-.+ +.+...|
T Consensus 681 fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN---Pk~~~lw 756 (913)
T KOG0495|consen 681 FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN---PKNALLW 756 (913)
T ss_pred CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC---CCcchhH
Confidence 2223344555555566666666666666554443 23334455555555556666666666666666555 3455566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 573 (638)
...+..-.+.|+.+.|..+..++++. ++.+...|..-|....+.++--.++..+++ .+-|+.....+...+...
T Consensus 757 le~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e 830 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSE 830 (913)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHH
Confidence 66666666666666666666666554 344455565555555555553333333222 245666677777778778
Q ss_pred cCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 574 YNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
.++++|++.++++++.+|++..++ ..+...|.-++-.+++.+-....++
T Consensus 831 ~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 831 KKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 899999999999999999988874 6778889888888888886655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-13 Score=130.39 Aligned_cols=425 Identities=17% Similarity=0.192 Sum_probs=272.9
Q ss_pred HHHHHhhcCCCCChhHHHHHHH--HhccCchhHHHHHHHhhhCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 006630 91 LELALQHSGVVLRPGLTERVIN--RCGDAGNLGYRYYMWASKQPN-YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKE 167 (638)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 167 (638)
+-+.|...|+++++.+-..++. .|.+..++.++-..|-..... -..+..+| +.|...+ ++-+..
T Consensus 137 lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~vAd---L~~E~~-- 203 (625)
T KOG4422|consen 137 LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAVAD---LLFETL-- 203 (625)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------ccccHHH---HHHhhc--
Confidence 4466778899999988766654 444555555544444332222 23444455 4455443 333332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh-ccCCCCHHHH
Q 006630 168 KPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR-ERFKPSLRHF 246 (638)
Q Consensus 168 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 246 (638)
|. ++.++..+|.++++--..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|. .+..||..|+
T Consensus 204 -PK--T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~Tf 276 (625)
T KOG4422|consen 204 -PK--TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTF 276 (625)
T ss_pred -CC--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhH
Confidence 33 778999999999999999999999999887766889999999988754432 267788886 4689999999
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHH----cCCCC----CH
Q 006630 247 TSLLYGWCKEGKLVE----AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD-AFELLKEMRR----KGCDP----NA 313 (638)
Q Consensus 247 ~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~----~g~~~----~~ 313 (638)
|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.+.| |.
T Consensus 277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999999998765 56788899999999999999999999999887644 4444444433 22333 44
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSG----CEAD---VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 386 (638)
..|...+..|....+.+.|.++..-+.... +.|+ ..-|..+....|+....+.-+..|+.|.-.-..|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 556777788888899999988876654321 2233 234566778888999999999999999988888999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466 (638)
Q Consensus 387 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (638)
..++++..-.+.++-..+++..++..|...+.....-++..++ .....|+...-..+-....+.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~----------------~~k~hp~tp~r~Ql~~~~ak~ 500 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA----------------RDKLHPLTPEREQLQVAFAKC 500 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh----------------cCCCCCCChHHHHHHHHHHHH
Confidence 9999999999999999999988887664333333222222222 222222221111111111110
Q ss_pred -CCHHHHHH-HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHH---HHHHHHHccCC
Q 006630 467 -GCLIEACE-YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWT---IWIHSLFSNGH 540 (638)
Q Consensus 467 -g~~~~A~~-~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~---~li~~~~~~g~ 540 (638)
-++.++.+ --.+|..... +| ..++.++-.+.+.|..++|.++|..+.+. +-.|.....| -+++.-.+...
T Consensus 501 aad~~e~~e~~~~R~r~~~~--~~--t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~s 576 (625)
T KOG4422|consen 501 AADIKEAYESQPIRQRAQDW--PA--TSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNS 576 (625)
T ss_pred HHHHHHHHHhhHHHHHhccC--Ch--hHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCC
Confidence 01112211 1223333332 22 23444444456666666666666666444 2222333333 33444455566
Q ss_pred HHHHHHHHHHHHhCC
Q 006630 541 VKEACSYCLDMMDAD 555 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~ 555 (638)
...|+..++-|...+
T Consensus 577 psqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 577 PSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHHHHHHHHcC
Confidence 666666666665443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-14 Score=132.74 Aligned_cols=434 Identities=14% Similarity=0.102 Sum_probs=291.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITT----EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 142 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
-.+.+++.+.+.|.+|+++|+-....-|. .+. ..++.+.-.+.+.|.++.|+.-|+...+. .|+..+-..|+-
T Consensus 241 mnigni~~kkr~fskaikfyrmaldqvps-ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i 317 (840)
T KOG2003|consen 241 MNIGNIHFKKREFSKAIKFYRMALDQVPS-INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLII 317 (840)
T ss_pred eeecceeeehhhHHHHHHHHHHHHhhccc-cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhh
Confidence 34557788889999999999877765443 232 33455555678999999999999998776 688877767777
Q ss_pred HHHhCCCHHHHHHHHHHHhcc-CCCCHHH--------HHHHH---------HHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 006630 218 ALCKNSSVKEAAKLFDEMRER-FKPSLRH--------FTSLL---------YGWCKEGK--LVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~--------~~~li---------~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 277 (638)
++..-|+-++..+.|.+|..- ..+|..- -..|+ .-+-+.++ .++++-.-.+++.--+.|+
T Consensus 318 ~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~ 397 (840)
T KOG2003|consen 318 CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPD 397 (840)
T ss_pred hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccc
Confidence 777789999999999998753 2222221 12222 22222222 1222222222222112232
Q ss_pred HH-------------HH--------HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh--cCCHHHHHH
Q 006630 278 IV-------------VY--------NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR--MEKMEEANR 334 (638)
Q Consensus 278 ~~-------------~~--------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g~~~~A~~ 334 (638)
-. .+ ..-...+.+.|+++.|.++++-+.+..-..-...-+.|-..+.- ..++.+|.+
T Consensus 398 fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqq 477 (840)
T KOG2003|consen 398 FAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQ 477 (840)
T ss_pred hhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHH
Confidence 11 00 01123467899999999999988876433333333433333333 346778888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006630 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC 414 (638)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 414 (638)
+-+...... .-+......-.+.....|++++|.+.+++.+.....- ...+..+.-.+...|++++|++.|-++... +
T Consensus 478 yad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l 554 (840)
T KOG2003|consen 478 YADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-L 554 (840)
T ss_pred HHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-H
Confidence 777766321 1122222222233445799999999999998763322 222233344567889999999998876543 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
..+..+...+...|-...+..+|++++.+.... ++.|+....-|...|-+.|+-.+|.+++-+-.+.- +.+..|..
T Consensus 555 ~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryf---p~nie~ie 630 (840)
T KOG2003|consen 555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF---PCNIETIE 630 (840)
T ss_pred HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc---CcchHHHH
Confidence 446777888888999999999999999887765 46778899999999999999999999877665543 46677777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIH-SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 573 (638)
-|..-|....-.+.++.+|+++.- +.|+..-|..|+. ++.+.|+++.|..+|+..-+. +.-|...+.-|+..|...
T Consensus 631 wl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dl 707 (840)
T KOG2003|consen 631 WLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDL 707 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccc
Confidence 777778888889999999998865 5899999998884 666889999999999987643 344555566667666665
Q ss_pred cCHHHHHHHHHHHHHH
Q 006630 574 YNRQIAAEITEKVRKM 589 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~ 589 (638)
|- ..+.++.+++-+.
T Consensus 708 gl-~d~key~~klek~ 722 (840)
T KOG2003|consen 708 GL-KDAKEYADKLEKA 722 (840)
T ss_pred cc-hhHHHHHHHHHHH
Confidence 53 4455565555443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-12 Score=127.66 Aligned_cols=446 Identities=10% Similarity=0.072 Sum_probs=344.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH---hcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC--
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMR---KEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD-- 208 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~---~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-- 208 (638)
.+.+...|-+-...=-.+|+.+...+++++-. +.++...+...|..=...|-..|..-.+..+....+..|+.-.
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 34455555555555555565555555554432 1223445555555555556566666666666666555554332
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
..||+.-.+.|.+.+.++-|..+|....+-+|-+...|...+..--..|..++-..+|++....- +-....|....+.+
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEK 594 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHH
Confidence 24666667778888999999999999888888899999999988888999999999999999763 45566777778888
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCY 368 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 368 (638)
-..|+...|..++....+.... +...|-+-+..-....+++.|..+|.+.... .|+...|.--+...--.++.++|+
T Consensus 595 w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~ 671 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEAL 671 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHH
Confidence 8899999999999999887444 7788999999999999999999999998875 567777766666666689999999
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006630 369 EILDSMIQRGILPN-QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447 (638)
Q Consensus 369 ~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (638)
+++++.++. .|+ ...|..+...+-+.++++.|.+.|..-.+. ++..+..|-.|.+.--+.|.+-.|..+++...-+
T Consensus 672 rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 672 RLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 999999885 344 456777777888899999999888776654 4566677888888888999999999999999888
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006630 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYA 527 (638)
Q Consensus 448 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 527 (638)
+ +.+...|...|..-.+.|+.++|..+..+.++.- +.+...|..-|...-+.++-....+.+++ ++.|...
T Consensus 749 N-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec---p~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphV 819 (913)
T KOG0495|consen 749 N-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC---PSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHV 819 (913)
T ss_pred C-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchh
Confidence 7 7788999999999999999999999999988875 34445666666666666664444444333 4557788
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.-++...+....+++.|.+.|.+.++. .|| -.+|..+...+..+|.-+.-.+++.+....+|.+...+
T Consensus 820 llaia~lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 820 LLAIAKLFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 888888999999999999999999865 454 56799999999999999999999999999999887764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-12 Score=132.72 Aligned_cols=123 Identities=10% Similarity=-0.023 Sum_probs=63.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhC-C--CCCCHH-HH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG--CELNV---YAWTIWIHSLFSNGHVKEACSYCLDMMDA-D--VMPQPD-TF 563 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--~~p~~~-t~ 563 (638)
+..++.++++.+.+++|..+...+.... ..++. ..-..++.+.+..+++..|...++.|+.. + ..|... .|
T Consensus 629 ~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~ 708 (895)
T KOG2076|consen 629 FRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLW 708 (895)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3445556667777777777766665541 11111 12234455666677777777777776542 1 122222 24
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc-----chhhhhhhhhhHHHHHhh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF-----KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-----~~y~~~g~~~~A~~~~~~ 615 (638)
+..++...+.++-.--......+....|++...+ ......|.|..|...+-.
T Consensus 709 n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~r 765 (895)
T KOG2076|consen 709 NLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMR 765 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHH
Confidence 4345555555555555555555555555553221 334455666666654444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.3e-12 Score=130.74 Aligned_cols=440 Identities=14% Similarity=0.118 Sum_probs=310.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
.+.+.-.|++++|..++.++.+.+|. ....|..|...|-..|+.+++...+-.+-... +.|...|..+.+...+.|.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~--~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPR--NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence 34444459999999999999998875 77789999999999999999998876555443 5677899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHhHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY----NNLLSGYAQMGKMTDAFEL 300 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~g~~~~a~~~ 300 (638)
++.|.-.|.+..+..|++....---+..|-+.|+...|.+-|.++.....+.|..-. -.++..+...++-+.|.+.
T Consensus 223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999888888887777888999999999999999999987532222222 2345566777777888888
Q ss_pred HHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---------------------------HHHHH
Q 006630 301 LKEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD---------------------------VVTYT 352 (638)
Q Consensus 301 ~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---------------------------~~~~~ 352 (638)
++.....+ -..+...+++++..|.+...++.|......+.....++| ...+.
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r 382 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR 382 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence 88777632 233556788899999999999999888887766222222 22212
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILP--NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
+.-++......+....+.....+..+.| +...|.-+..++...|++.+|..++..+......-+..+|-.+..+|..
T Consensus 383 -l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 383 -LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred -HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 2223344444444445555555555333 4567788888999999999999999999887555667888889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCCcHHHHHHHHHHHHHcC
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL------SAPQYGTLKALLNSLLRAQ 504 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~------~~p~~~~~~~ll~~~~~~g 504 (638)
.|..++|.+.|+.+.... +-+...-..|...+.+.|+.++|.+.+..+...+.. ..|...........+...|
T Consensus 462 l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 999999999999988765 555667778888888999999999998886533210 1233334444445556666
Q ss_pred CHHHHHHHHHHHHHcC-----C---------------------------------------------CC-----------
Q 006630 505 KVEMAKDVWSCIVTKG-----C---------------------------------------------EL----------- 523 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~~-----~---------------------------------------------~p----------- 523 (638)
+.++=..+-..|+... + .+
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 6655333332222110 0 00
Q ss_pred CHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHH---HHH-HHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 524 NVY----AWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQPD---TFA-KLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 524 ~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~---t~~-~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
... .+.-++..+++.|++++|..++..++.... .-+.. .+. ..+.++...+++..|....+-++..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 111 223456678888999999998888876432 22222 233 3344556778999999888888877
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-11 Score=119.08 Aligned_cols=440 Identities=10% Similarity=0.063 Sum_probs=331.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDA 218 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~ 218 (638)
.|-....-=-..+++..|..+|++.+..+ ..+...|..-+..-.++..+..|..++++.+.. -|-+ ..|...+.+
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ym 150 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYM 150 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHH
Confidence 33333333345678889999999998764 347778888888888999999999999998865 3433 456666777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
--..|++..|.++|++..+ ..|+...|++.|..-.+-+.++.|..++++.+-. .|++.+|.-..+.-.+.|+...+.
T Consensus 151 EE~LgNi~gaRqiferW~~-w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME-WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHhcccHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 7778999999999999776 4789999999999999999999999999999865 699999999999999999999999
Q ss_pred HHHHHHHHc-CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH---HHHHH-
Q 006630 299 ELLKEMRRK-GC-DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD--VVTYTTLISGFCKSRKID---RCYEI- 370 (638)
Q Consensus 299 ~~~~~~~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~---~A~~~- 370 (638)
.+++...+. |- ..+...+.+....=.++..++.|.-+|.-..+.- +.+ ...|..+...--+-|+.. +++--
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 999988765 21 1123445555555566788999999998887652 222 344444444334455543 33322
Q ss_pred ----HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHH----HH----HHHHcCCHHH
Q 006630 371 ----LDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV--SNYNVV----IR----LACKLGELKE 436 (638)
Q Consensus 371 ----~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l----i~----~~~~~g~~~~ 436 (638)
++.+++.+. -|-.+|-..+..-...|+.+...++|+..+.. ++|-. ..|... |+ --....+++.
T Consensus 307 Rk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 307 RKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344555443 37788888888888889999999999999865 34421 111111 11 1235689999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMV----HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 512 (638)
+.++|+...+. ++....||.-+- .-..++.++..|.+++-..+.. .|...+|...|..-.+.++++.++.+
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~----cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK----CPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc----CCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 99999998884 344445555443 3445688999999999888765 48889999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 513 WSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 513 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
+++.++.++. +..+|......-...|+.+.|..+|+-+++.+. .--...|.+.++--...|.+++|+.+++++++..+
T Consensus 460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 9999987544 778898888888889999999999998887542 22345688888877888999999999999999887
Q ss_pred hccc
Q 006630 592 ERQI 595 (638)
Q Consensus 592 ~~~~ 595 (638)
....
T Consensus 539 h~kv 542 (677)
T KOG1915|consen 539 HVKV 542 (677)
T ss_pred cchH
Confidence 7664
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.2e-12 Score=121.77 Aligned_cols=368 Identities=15% Similarity=0.095 Sum_probs=188.3
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH--
Q 006630 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY-- 281 (638)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-- 281 (638)
+...|.+.+....-.+.+.|....|+..|.......|-.-..|..|...... .+ ....... |.+.|..-+
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e----~~~~l~~-~l~~~~h~M~~ 230 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IE----ILSILVV-GLPSDMHWMKK 230 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HH----HHHHHHh-cCcccchHHHH
Confidence 4456666665556666677788888888877776666666666665554321 11 1111111 112111111
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHH
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE--ADVVTYTTLISGFC 359 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~ 359 (638)
-.+..++-.....+++.+-.+.....|++-+...-+....+.-...++++|+.+|+++.+...- -|..+|..++ |.
T Consensus 231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv 308 (559)
T KOG1155|consen 231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HH
Confidence 1233444455566666666666666666544444444444455556666666666666655100 1334444433 22
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 439 (638)
+..+- .+.++.+-...--+--+.|...+.+-|+-.++.++|...|++..+.+ +.....|+.+..-|....+...|+.
T Consensus 309 ~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHH
Confidence 22211 11122111111111123344455555555566666666666666554 3344455555555666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
-++...+.+ +.|-..|-.|.++|.-.+.+.=|+-+|++...-. |.|...|.+|.++|.+.++.++|++.|..+...
T Consensus 386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k---PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK---PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 666666554 5555666666666666666666666666665544 345556666666666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCCHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD----ADVMPQPDT--FAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
|-. +...+..+...|-+.++.++|...|++.++ .|...+... ..-|..-+.+.+++++|..+..++.+-
T Consensus 462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 322 345555566666666666666666555443 121111111 111333344556666666555555544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=126.38 Aligned_cols=212 Identities=13% Similarity=0.053 Sum_probs=128.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (638)
.|+.-.+.+-|+..++... .+...|.-+..+|....+.++..+.|++..+.+ +.|..+|..-...+.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~-~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDP-AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCc-ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 4566666666666665532 222235555566666777777777777766665 55556666666666666667777777
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
|++.+... +.+...|.-+.-+..+.++++++...|++..++ ++..+..|+....++...++++.|.+.|+..++.
T Consensus 417 F~Kai~L~---pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L- 491 (606)
T KOG0547|consen 417 FQKAISLD---PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL- 491 (606)
T ss_pred HHHHhhcC---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh-
Confidence 77766654 234445555555555666777777777776665 4445566666667777777777777777666543
Q ss_pred CCCC---------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 556 VMPQ---------PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 556 ~~p~---------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
.|+ +.+...++..-.+ +|+..|..+++++++++|....++ .+-..+|+.++|.++|++.
T Consensus 492 -E~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 -EPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred -ccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 2222222222222 667777777777777777766554 3555667777777777663
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-12 Score=122.90 Aligned_cols=353 Identities=12% Similarity=0.056 Sum_probs=257.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHH--hHHHH
Q 006630 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNAN--SYTVL 319 (638)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l 319 (638)
|...+-...-.+.+.|....|.+.|...+..- +-.-..|..|...+ -+.+.+ ..... |.+.|.. .--.+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~----~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEIL----SILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHH----HHHHh-cCcccchHHHHHHH
Confidence 44444444455667788899999998887542 22333333333322 222222 22222 2222211 11234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcC
Q 006630 320 IQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL--PNQLTYLHIMLAHEKKE 397 (638)
Q Consensus 320 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g 397 (638)
..+|-.....+++..-.......|++.+...-+....+.....++++|+.+|+++.+..+. -|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 4566666788889888888888887766666565666677789999999999999987421 26778888775543322
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
.+.---+....+. +--+.|...+.+.|.-.++.++|...|+...+.+ +.....|+.|.+-|....+...|++-++
T Consensus 314 kLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 KLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred HHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 2221111111111 2334567778888999999999999999999987 6667899999999999999999999999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006630 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 557 (638)
.+++-. +.|...|-+|..+|.-.+...-|.-+|+++.+.. +.|...|.+|..+|.+.++.++|++.|.+....| .
T Consensus 389 rAvdi~---p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 389 RAVDIN---PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHhcC---chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 999987 5899999999999999999999999999998863 3478999999999999999999999999998765 4
Q ss_pred CCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-------Hhcccc--c--chhhhhhhhhhHHHHH
Q 006630 558 PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA-------AERQIT--F--KMYKRRGERDLKEKAK 613 (638)
Q Consensus 558 p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------p~~~~~--~--~~y~~~g~~~~A~~~~ 613 (638)
.+...+..|.+.+.+.++.++|.+++++-++.. |+-..+ + +-+.+.+++++|...-
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 567889999999999999999999999999844 221111 1 5667889999888743
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-12 Score=125.57 Aligned_cols=456 Identities=11% Similarity=-0.007 Sum_probs=285.2
Q ss_pred HhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh--CC
Q 006630 127 WASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK--YG 204 (638)
Q Consensus 127 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--~g 204 (638)
|+.+..+..-++..---+..+|.-.|+++.|..+...-.-. ..+..+......++.+..++++|..++..... .+
T Consensus 38 ~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le---~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~ 114 (611)
T KOG1173|consen 38 WADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE---KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNP 114 (611)
T ss_pred HHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh---hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcc
Confidence 55444444444444445667777778888777776554322 23666677777777888888888888773210 01
Q ss_pred CCCCHHH-H--------------HHH-------HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHH
Q 006630 205 CEPDEFV-F--------------GCL-------LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG-KLVE 261 (638)
Q Consensus 205 ~~~~~~~-~--------------~~l-------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~ 261 (638)
+.-+..+ - +.- ...|....+.++|...|.+.... |+..+..+...-...= -.++
T Consensus 115 f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~---D~~c~Ea~~~lvs~~mlt~~E 191 (611)
T KOG1173|consen 115 FSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA---DAKCFEAFEKLVSAHMLTAQE 191 (611)
T ss_pred hhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc---chhhHHHHHHHHHHHhcchhH
Confidence 1111111 0 000 11233344556666666555433 3333333222111110 0112
Q ss_pred HHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 262 AKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 262 A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
-.++|..+.-. -...+......+.....-...-+.....-++-.-.+..-+......-.+-+...+++.+..++++.+.
T Consensus 192 e~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~ll 271 (611)
T KOG1173|consen 192 EFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELL 271 (611)
T ss_pred HHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHH
Confidence 22222211000 00111112222211110000000000000001111234455666667777888899999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
+.. ++....+..-|.++...|+..+-+.+=.+|.+.-+ -...+|-++..-|...|+..+|.+.|.+....+ +.-...
T Consensus 272 e~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpa 348 (611)
T KOG1173|consen 272 EKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPA 348 (611)
T ss_pred hhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHH
Confidence 764 55666666667788889998888888888887633 367788888888888899999999999887654 333456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
|-.+...|.-.|..|+|...+....+.- +-....+.-+..-|.+.++.+-|.++|.+..... |.|+..++.+.-..
T Consensus 349 Wl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~---P~Dplv~~Elgvva 424 (611)
T KOG1173|consen 349 WLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA---PSDPLVLHELGVVA 424 (611)
T ss_pred HHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCcchhhhhhhhee
Confidence 7788888999999999999888776541 2223345556667888899999999999988765 45666677766666
Q ss_pred HHcCCHHHHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc
Q 006630 501 LRAQKVEMAKDVWSCIVTK--GCEL----NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~--~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 574 (638)
...+.+.+|..+|+..+.. ...+ -..+++.|.++|.+.+++++|+..+++.+... .-|..|+.++.-.+...|
T Consensus 425 y~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 425 YTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLG 503 (611)
T ss_pred ehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhc
Confidence 7788999999999888733 1111 23457888999999999999999999988652 446778888888899999
Q ss_pred CHHHHHHHHHHHHHHHHhcccc
Q 006630 575 NRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+++.|.+.+.+++-+.|++...
T Consensus 504 nld~Aid~fhKaL~l~p~n~~~ 525 (611)
T KOG1173|consen 504 NLDKAIDHFHKALALKPDNIFI 525 (611)
T ss_pred ChHHHHHHHHHHHhcCCccHHH
Confidence 9999999999999999998654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-16 Score=149.63 Aligned_cols=259 Identities=15% Similarity=0.132 Sum_probs=100.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLT-YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 431 (638)
.+...+.+.|++++|+++++........|+... |..+...+...++.+.|.+.++.+.+.+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 345666677777777777755444332233333 3334445556777888888888777654 2355566666666 677
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006630 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511 (638)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 511 (638)
+++++|.+++...-+. .++...+..++..+...++++++..+++.+....- .+++...|..+...+.+.|+.++|.+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-APDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888776554 35556677778888888888888888888775432 13566677777788888888888888
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 512 VWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 512 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.++++++. .| |....+.++..+...|+.+++.+++....+.. ..|+..|..+..++...|++++|..+++++.+.+
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 88888886 34 46777888888888888888888877776542 4455667788888888888888998888888888
Q ss_pred Hhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 591 AERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 591 p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
|+|+..+ +++...|+.++|.++++++-..
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 8888775 6788888888888888875443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-12 Score=131.26 Aligned_cols=251 Identities=9% Similarity=0.016 Sum_probs=117.2
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 289 AQMGKMTDAFELLKEMRRKGCDPNANSY--TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR 366 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 366 (638)
.+.|+++.|.+.+.++.+. .|+...+ ......+...|++++|...++++.+.. +-+......+...|.+.|++++
T Consensus 129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~ 205 (398)
T PRK10747 129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSS 205 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHH
Confidence 4444555555555444432 2222111 122344455555555555555555443 2234445555555555555555
Q ss_pred HHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006630 367 CYEILDSMIQRGILPNQL-------TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN 439 (638)
Q Consensus 367 A~~~~~~m~~~~~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 439 (638)
|.+++..+.+.+..++.. +|..++.......+.+...++++.+.+. .+.++.....+...+...|+.++|.+
T Consensus 206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~ 284 (398)
T PRK10747 206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ 284 (398)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 555555555543331110 1111122222222333333344333222 13345555555555666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
++++..+. +||.... ++.+....++.+++++..+...+.. +.+...+..+...|.+.+++++|.+.|+.+.+.
T Consensus 285 ~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~---P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~ 357 (398)
T PRK10747 285 IILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH---GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ 357 (398)
T ss_pred HHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 66555542 3333111 2222233455555555555555544 233344445555555555555555555555553
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
.|+...+..+..++.+.|+.++|..++++.+
T Consensus 358 --~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 358 --RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-12 Score=131.05 Aligned_cols=297 Identities=11% Similarity=0.079 Sum_probs=172.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPD-IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (638)
...|+++.|.+.+.+..+. .|+ ...+-....+....|+.+.|.+.+.+..+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567888888877776655 333 3334444566667777888877777776542222222333346667777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHH
Q 006630 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI-MLAHEKKEELEECVELMGEMRK 411 (638)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~ 411 (638)
...++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+.. +...+..+ ..++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~------------------ 232 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE------------------ 232 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH------------------
Confidence 77777777664 335566777777777777777777777777776543 22222111 1110
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH
Q 006630 412 IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG 491 (638)
Q Consensus 412 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~ 491 (638)
..++..-......+...+.++...+. .+.+...+..++..+...|+.++|.+.+++..+.. |+..
T Consensus 233 ----------~~~l~~~~~~~~~~~L~~~~~~~p~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----pd~~ 297 (409)
T TIGR00540 233 ----------IGLLDEAMADEGIDGLLNWWKNQPRH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----GDDR 297 (409)
T ss_pred ----------HHHHHHHHHhcCHHHHHHHHHHCCHH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----CCcc
Confidence 00010000011112222222222211 01355666666677777777777777777776654 2222
Q ss_pred HH-HHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCC-H--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006630 492 TL-KALLNS--LLRAQKVEMAKDVWSCIVTKGCELN-V--YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565 (638)
Q Consensus 492 ~~-~~ll~~--~~~~g~~~~A~~~~~~~~~~~~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 565 (638)
.. ..++.. ....++.+.+.+.++...+. .|+ . ....++...+.+.|++++|.++|+........|+..++..
T Consensus 298 ~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 298 AISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred cchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 10 001111 22346667777777777665 232 3 4556777888888888888888885333344788877778
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
+...+.+.|+.++|.+++++.+..
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888877554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-12 Score=129.71 Aligned_cols=222 Identities=12% Similarity=0.091 Sum_probs=116.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH-------HhHHHHHHHH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA-------NSYTVLIQAL 323 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~~ 323 (638)
..+...|++++|...++++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++...
T Consensus 161 ~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 161 RIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433 223334444444444444444444444444443322111 1222233333
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403 (638)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 403 (638)
....+.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. .|+... .++.+....++.+++.
T Consensus 240 ~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHH
Confidence 3333444444555544332 1335555666666666666666666666666553 223311 1223333446666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
+..+...+.. +-|...+.++...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666543 445555666666777777777777777777664 46666666777777777777777777766543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.6e-12 Score=130.23 Aligned_cols=291 Identities=13% Similarity=0.071 Sum_probs=142.0
Q ss_pred cCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 006630 187 ARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSL-RHFTSLLYGWCKEGKLVEAKY 264 (638)
Q Consensus 187 ~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~ 264 (638)
.|+++.|.+.+....+. .|+. ..+-....++...|+.+.|.+.|.+..+..+.+. .........+...|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 45555555555444433 2222 2222223444444555555555555443322221 222223445555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HhcCCHHHHHHHHHHHHH
Q 006630 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQAL---CRMEKMEEANRAFVEMER 341 (638)
Q Consensus 265 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~ 341 (638)
.++.+.+.+ +-+...+..+...+...|++++|.+++..+.+.+..+.......-...+ ...+..+++.+.+..+.+
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 555555543 2234445555555555555555555555555544321111111111111 111222222223333332
Q ss_pred cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 342 SGC---EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY-LHIMLAHEKKEELEECVELMGEMRKIGCVPD 417 (638)
Q Consensus 342 ~g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 417 (638)
... +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.. +-|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~ 332 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDK 332 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCC
Confidence 210 125566666666666666666666666666664322111111 111111223455666666666665542 333
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 418 V--SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 418 ~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 455566777777777777777777433333357777777777777777777777777776543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=5.9e-12 Score=115.45 Aligned_cols=290 Identities=10% Similarity=0.128 Sum_probs=197.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC---HHhHHHHHHHHHhcCCHHH
Q 006630 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN---ANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g~~~~ 331 (638)
-+++.++|.++|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++++.+.++---+. ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3577888888888888753 33445566788888899999999999998887511111 2334567778899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL----TYLHIMLAHEKKEELEECVELMG 407 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~ 407 (638)
|+.+|..+.+.+ ..-......|+..|-+..+|++|++.-+++.+.+..+..+ .|.-+...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998754 3345677788999999999999999999888876554432 34444555556677888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 006630 408 EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA 487 (638)
Q Consensus 408 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~ 487 (638)
+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.+..--..+...|..+|.+.|+.++...++..+.+..
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~---- 279 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN---- 279 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 877654 333334445566778888888888888888877633334566677788888888888888888887764
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHh
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS---NGHVKEACSYCLDMMD 553 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~ 553 (638)
+.......+........-.+.|..++.+-+.. .|+...+..+++.-.. .|...+.+..+++|+.
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 22222233333333334455555555554444 6777777777765543 3456666666666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=142.24 Aligned_cols=127 Identities=14% Similarity=0.099 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q 006630 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497 (638)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 497 (638)
...|..+...+.+.|+.++|++.|++..+.. |.|....+.++..+...|+.+++.++++...... +.+...+..+.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~~~~~la 221 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPDLWDALA 221 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCCHCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 3333334444444444444444444444332 2223334444444444444444444433333322 11222233334
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL 549 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 549 (638)
.++...|+.++|...|++..+.. +.|......+.+++...|+.++|..+.+
T Consensus 222 ~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 222 AAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-------------
T ss_pred HHhcccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence 44444444444444444443321 1133333444444444444444444433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-09 Score=106.99 Aligned_cols=283 Identities=12% Similarity=0.170 Sum_probs=168.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcC
Q 006630 327 EKMEEANRAFVEMERSGCEAD------VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN---QLTYLHIMLAHEKKE 397 (638)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g 397 (638)
|+..+-...|.+..+. +.|- ...|..+...|-..|+.+.|..+|++..+...+-- ..+|..-...-.+..
T Consensus 361 ~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 361 GNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred CChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 4455555555555442 1111 23466777777778888888888877766533211 123333334444566
Q ss_pred CHHHHHHHHHHHHHCCC-----------CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 398 ELEECVELMGEMRKIGC-----------VP------DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
+++.|.++++......- ++ +..+|...++.--..|-++....+|+.+.+..+. ++.......
T Consensus 440 ~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyA 518 (835)
T KOG2047|consen 440 NFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYA 518 (835)
T ss_pred hHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHH
Confidence 77777777766542110 11 2234455555555677777777888877765432 222222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLR---AQKVEMAKDVWSCIVTKGCELNVYAWTIWI--HS 534 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~ 534 (638)
..+-.+.-++++.+.|++-+..-. .|+ ...|+..+.-+.+ ..+++.|+.+|+++++ |++|...-+--++ ..
T Consensus 519 mfLEeh~yfeesFk~YErgI~LFk--~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~l 595 (835)
T KOG2047|consen 519 MFLEEHKYFEESFKAYERGISLFK--WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKL 595 (835)
T ss_pred HHHHhhHHHHHHHHHHHcCCccCC--CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHH
Confidence 334456667777777765544322 343 4456665555442 3468899999999988 5666544332222 22
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------cchhhhhhhh
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQP--DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------FKMYKRRGER 606 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~y~~~g~~ 606 (638)
--+.|....|+.+++++.. ++++.. ..|+..+.-....--....+.+++++++.-|+.... .++-.+.|+.
T Consensus 596 EEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 596 EEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEI 674 (835)
T ss_pred HHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhH
Confidence 2356888899999988754 344432 346666665555445667788999999988876554 1677788888
Q ss_pred hhHHHHHhh
Q 006630 607 DLKEKAKKQ 615 (638)
Q Consensus 607 ~~A~~~~~~ 615 (638)
+.|..++.-
T Consensus 675 dRARaIya~ 683 (835)
T KOG2047|consen 675 DRARAIYAH 683 (835)
T ss_pred HHHHHHHHh
Confidence 888887653
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-11 Score=116.06 Aligned_cols=425 Identities=12% Similarity=0.045 Sum_probs=262.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHH
Q 006630 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALC 220 (638)
Q Consensus 142 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~ 220 (638)
....+-+.++|.+++|++.|.+.....|.. +..|.....+|...|++++..+.-...++. .|+- -.+.--..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~e--piFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDE--PIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCC--chhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Confidence 344566778999999999999998877542 567888888999999999998888877765 4553 34555555666
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH--------HHHHH-CC--CCCCHHHHHHHHHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVL--------VQMKD-AG--FEPDIVVYNNLLSGYA 289 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~m~~-~g--~~p~~~~~~~ll~~~~ 289 (638)
..|++++|+.=. |-.++..++....-.--+.+++ ++-.+ .+ +-|......+....+.
T Consensus 195 ~lg~~~eal~D~------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 195 QLGKFDEALFDV------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred hhccHHHHHHhh------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 667777664211 1122222222111111122222 22111 22 2233333333222221
Q ss_pred HcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHc---CC---CCC------HHHHHHHHH
Q 006630 290 QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM-EKMEEANRAFVEMERS---GC---EAD------VVTYTTLIS 356 (638)
Q Consensus 290 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~---g~---~~~------~~~~~~li~ 356 (638)
.. +. ..+...+-..|...-..+=..+... ..+..|...+.+-... .. ..| ..+...-..
T Consensus 263 ~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gt 334 (606)
T KOG0547|consen 263 AD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGT 334 (606)
T ss_pred cc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhh
Confidence 10 00 0000000001111111111111110 1223333332221110 00 011 111111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
.+.-.|+.-.|..-|+..++....++. .|.-+...|....+.++....|....+.+ +.+..+|..-..++.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 344568888899999988886555433 26667778888899999999999988876 5677788887888888899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
|..-|++.+..+ +-+...|..+..+..+.+++++++..|++....- |.....|+-....+...++++.|.+.|+..
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF---P~~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF---PNCPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999998876 5667788888888888999999999999998876 345667888888899999999999999999
Q ss_pred HHcCCCCC---------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 517 VTKGCELN---------VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 517 ~~~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
+.. +|+ +..-.+++-.- -.+++..|..++++.++. .|. ...|.+|...-...|+.++|++++++.
T Consensus 489 i~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 489 IEL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred Hhh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 876 332 11111222111 338899999999998854 554 445888888888999999999999999
Q ss_pred HHHHHhcccccchhh
Q 006630 587 RKMAAERQITFKMYK 601 (638)
Q Consensus 587 ~~~~p~~~~~~~~y~ 601 (638)
..+.-.....+++|.
T Consensus 564 a~lArt~~E~~~a~s 578 (606)
T KOG0547|consen 564 AQLARTESEMVHAYS 578 (606)
T ss_pred HHHHHhHHHHHHHHH
Confidence 988776666655543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.5e-13 Score=132.82 Aligned_cols=289 Identities=13% Similarity=0.102 Sum_probs=173.7
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKIDRCYEI 370 (638)
Q Consensus 293 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (638)
+..+|...|..+... ..-...+...+..+|...+++++|+++|+.+.+.. ...+...|.+.+.-+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 345566666654433 12122444555666666666666666666665431 01134455554432211 122222
Q ss_pred H-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006630 371 L-DSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL 449 (638)
Q Consensus 371 ~-~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 449 (638)
+ +.+... -+-.+.+|..+.++|+-+++.+.|++.|++.++.+ +-...+|+.+..-+.....+|.|...|+.....+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 2 222222 22255667677777777777777777777766643 2255666666666666677777777777766543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 529 (638)
+-+...|--+...|.++++++.|.-.|+.+.+.+ +-+......+...+-+.|+.++|+++++++...+.+ |+..--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN---P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN---PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC---ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 3333455556667777777777777777777665 345555556666667777777777777777765333 444444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+..+...+++++|+..++++.+. .|+ ...+..+...|.+.|+.+.|..-+.-+..++|....
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 4556667777888888887777653 554 345667777777788888888777777777776544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-13 Score=132.93 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=228.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 328 KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI--LPNQLTYLHIMLAHEKKEELEECVEL 405 (638)
Q Consensus 328 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~a~~~ 405 (638)
+.++|...|..+.+.- .-.......+..+|...+++++|.++|+.+.+... .-+...|.+++--+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 4578999999966552 22345666788999999999999999999987531 22667888777654332 22333
Q ss_pred HH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006630 406 MG-EMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484 (638)
Q Consensus 406 ~~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 484 (638)
+. .+.+. -+..+.+|.++..+|.-.++.+.|++.|++....+ +-...+|+.+..-+.....++.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 32 33333 26678999999999999999999999999999876 4467899999999999999999999999998876
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 485 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
+-++.+|-.+.-.|.+.++++.|+-.|+++++.+.. +.+....+...+.+.|+.++|+++++++.... .-|+..-.
T Consensus 486 --~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 486 --PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred --chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 467889999999999999999999999999986433 66777788889999999999999999998653 23455544
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhhhhh
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRRARQ 625 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~~~ 625 (638)
.-...+...+++++|.+.++++.++-|++...+ .+|.+.|+.+.|...|--+.+...|..+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 555667778999999999999999999998875 6999999999999999887666665443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-11 Score=111.00 Aligned_cols=294 Identities=16% Similarity=0.145 Sum_probs=140.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH------HHHHHHHHHHHhCCC
Q 006630 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE------FVFGCLLDALCKNSS 224 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~g~ 224 (638)
.++.++|.++|-+|.+.+|. +.++-.+|...|-+.|..+.|+.+++.+.+. ||. .+...|..-|...|-
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~--t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPE--TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hcCcchHHHHHHHHHhcCch--hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 45677777777777776543 5555666777777777777777777766653 331 223344455555666
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHHcCCHhHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV----VYNNLLSGYAQMGKMTDAFEL 300 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~g~~~~a~~~ 300 (638)
+|.|+.+|..+.+...--......|+..|-...++++|++.-+++.+.+-.+..+ .|.-+...+....+++.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 6666666665544212223344455555555555555555555555443222211 222222223333344444444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006630 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL 380 (638)
Q Consensus 301 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 380 (638)
+.+..+.... ++..--.+.+.+. ..|++..|++.++...+.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~-----------------------------------~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVEL-----------------------------------AKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHH-----------------------------------hccchHHHHHHHHHHHHhChH
Confidence 4444433211 2222223334444 444444444444444444332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 381 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
--..+...+..+|...|+.+++...+..+.+.. +....-..+.+.-....-.+.|...+.+-..+ +|+...+..+|
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~ 322 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLM 322 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHH
Confidence 223334444444455555555554444444432 12222222222222233334444444443333 46666666666
Q ss_pred HHHHh---cCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 461 HGFLG---QGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 461 ~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
..-.. .|...+.+.+++.|....+...|.
T Consensus 323 ~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 323 DYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 54432 344555566666666544332343
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=110.60 Aligned_cols=286 Identities=13% Similarity=0.073 Sum_probs=188.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRA 335 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (638)
.|++..|+++..+-.+.+ +-....|..-..+.-..|+.+.+-..+.+.-+..-.++..++-.........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 567777777777766655 2234455555666667777777777777776654455666666677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 336 FVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ-------LTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 336 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
.+++.+.+ +.+.........+|.+.|++.+...++..|.+.|.--+. .++..+++-+...+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 445667777777888888888888888888777765443 3555666655555555555555655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 006630 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488 (638)
Q Consensus 409 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 488 (638)
.... ...++..-.+++.-+.++|+.++|.++..+..+++..|. -...-.+.+-++.+.-++..+.-.... +.
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h---~~ 326 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH---PE 326 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC---CC
Confidence 5433 244555666677777788888888888877777654444 122223445566666666666655544 23
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
++..+.+|...|.+.+.+.+|...|+..++. .|+..+|+.+.++|.+.|+..+|.+..++.+.
T Consensus 327 ~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 327 DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3456666777777777777777777766654 67777777777777777777777777766553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-10 Score=113.87 Aligned_cols=465 Identities=11% Similarity=0.058 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
.-+..+++-+..+.++.-|.-+-++..... .++...-.+.+++.-.|+++.|..+...-.-. ..|..+.......
T Consensus 17 ~~~~~~~r~~l~q~~y~~a~f~adkV~~l~---~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 17 EKYRRLVRDALMQHRYKTALFWADKVAGLT---NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKC 91 (611)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhcc---CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHH
Confidence 334444444445556667777777766554 24445556788888888999888877654322 4677888888889
Q ss_pred HHhCCCHHHHHHHHHHH----hc--cCCCC--------HHH----HHHHH-------HHHHhcCCHHHHHHHHHHHHHCC
Q 006630 219 LCKNSSVKEAAKLFDEM----RE--RFKPS--------LRH----FTSLL-------YGWCKEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~----~~--~~~~~--------~~~----~~~li-------~~~~~~g~~~~A~~~~~~m~~~g 273 (638)
+.+..++++|..++... .. ..+.+ ..- -+.-. ..|....+.++|...|.+....
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~- 170 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA- 170 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc-
Confidence 99999999999888732 10 01111 111 11111 2233445566666666666533
Q ss_pred CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006630 274 FEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC----DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349 (638)
Q Consensus 274 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (638)
|...|..+...-.. .+-.+.+.++.+..... ..+......+.....-...-+.....-.+..-.+...+..
T Consensus 171 ---D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 171 ---DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred ---chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 44434333221111 11112222222222110 1112222222211100000000111111011112344666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 429 (638)
....-..-+...+++.+.+++++...+... +....+..-|.++...|+..+-..+-..+.+. .|..+.+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHH
Confidence 666677778889999999999999988632 34445555566888888888777777777765 3677889999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
-.|+..+|++.|.+....+ +.=...|......|+..|..++|+..+..+.+.-. -....+.-+.--|.+.++++.|
T Consensus 324 ~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~---G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP---GCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc---CCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999987654 22335899999999999999999998888776421 1112223345568899999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCC----CHHHHHHHHHHHHhhcCHHHHHHHH
Q 006630 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA--DVMP----QPDTFAKLMRGLKKLYNRQIAAEIT 583 (638)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~t~~~ll~~~~~~g~~~~A~~~~ 583 (638)
.++|.++... .+.|+...+-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|+.+|++.+.+++|+..+
T Consensus 400 e~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 9999999876 3446777888877777889999999999987631 1111 2346889999999999999999999
Q ss_pred HHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 584 EKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 584 ~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
++++.+.|+++..+ -+|...|+.+.|...|.+.-...+
T Consensus 479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999887 489999999999999998554444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-09 Score=101.18 Aligned_cols=407 Identities=14% Similarity=0.048 Sum_probs=263.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
..+.+.-...+.+|...++-+.|...+...+..- ...--|.++..+-+.| +-.++.--+.......|--...
T Consensus 94 ~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~---r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~---- 166 (564)
T KOG1174|consen 94 FGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL---RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQV---- 166 (564)
T ss_pred cccHHHHHHHHHHHHHHccchHHHHHHhcCCccc---cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHH----
Confidence 3455566667888888888888888877765431 1122233333333333 2222222222222211111111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH--cCCHhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhc
Q 006630 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ--MGKMTDAFELLKEMRRK-GCDPNANSYTVLIQALCRM 326 (638)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~ 326 (638)
|.+..+.+ +..+...=..|-...++|...+....+.+++. .++...+.+.+-.+... -++-|+.....+.+.+...
T Consensus 167 i~~ll~l~-v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~ 245 (564)
T KOG1174|consen 167 IEALLELG-VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYN 245 (564)
T ss_pred HHHHHHHh-hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhh
Confidence 11111110 00011111123333344544455555555444 45555555555444433 3666788899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 327 EKMEEANRAFVEMERSGCEADVV-TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVEL 405 (638)
Q Consensus 327 g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 405 (638)
|+.++|...|++.... .|+.. ......-.+.+.|+.++...+...+....-. ....|..-+......++++.|+.+
T Consensus 246 Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 246 GDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred cCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHH
Confidence 9999999999998754 33322 1222233456788999888888887764211 222232333444567888999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006630 406 MGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL 485 (638)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 485 (638)
-++.++.+ +-+...|-.-...+...|++++|.-.|+.....- +-+..+|.-|+..|...|++.||.-+-....+.-
T Consensus 323 ~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~-- 398 (564)
T KOG1174|consen 323 VEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF-- 398 (564)
T ss_pred HHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh--
Confidence 88888764 3444555444567788999999999999988764 5678999999999999999999998888776653
Q ss_pred CCCcHHHHHHHH-HHHHH-cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH
Q 006630 486 SAPQYGTLKALL-NSLLR-AQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT 562 (638)
Q Consensus 486 ~~p~~~~~~~ll-~~~~~-~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 562 (638)
+.+..++..+. ..|.- ..--++|.+++++.++. .|+ ....+.+...+...|..++++.++++.+.. .||...
T Consensus 399 -~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~L 473 (564)
T KOG1174|consen 399 -QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNL 473 (564)
T ss_pred -hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHH
Confidence 24444544442 23332 22347899999988775 565 345677788889999999999999998854 899999
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 563 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.+.|.+.+...+.+++|.+.+..++.++|++...+
T Consensus 474 H~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 474 HNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 99999999999999999999999999999988775
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.5e-09 Score=104.92 Aligned_cols=464 Identities=13% Similarity=0.130 Sum_probs=287.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.+..++..| ..+++...+++.+.+.+..|..++ +.....-.+...|+-++|....+...+.. ..+.++|..+.-.+
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHge--slAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEHGE--SLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCccch--hHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 344455555 457788888888888887766444 44444444556788888888887777644 45667888888777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
....++++|++.|.......+.|...|.-+.-.-.+.++++.....-.++.+.. +-....|..+..++.-.|+...|..
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778889999999988877777788888888877788888888777777777653 3345567888888888889999999
Q ss_pred HHHHHHHcC-CCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 006630 300 LLKEMRRKG-CDPNANSYTVLI------QALCRMEKMEEANRAFVEMERSGCEADVVT-YTTLISGFCKSRKIDRCYEIL 371 (638)
Q Consensus 300 ~~~~~~~~g-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~ 371 (638)
++++..+.. -.|+...|.-.. ....+.|.+++|.+.+..-... ..|-.. -.+-...+.+.++.++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 988887764 245555553332 2345677788887777665433 222222 234456677888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCC
Q 006630 372 DSMIQRGILPNQLTYLHIMLAHE-KKEELEECV-ELMGEMRKIGCVPDVSNYNVV-IRLACKLGELKEAVNVWNEMEAAS 448 (638)
Q Consensus 372 ~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~ 448 (638)
..++.. .||..-|.-.+..+. +-.+.-++. .+|....+. .|....-..+ +....-..-.+..-+++..+..+|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 988875 456555554444333 333333333 555555442 1111110000 111111222333445556667777
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCC--------CCCcHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 006630 449 LSPGTDSFVVMVHGFLGQGCLIE----ACEYFKEMVGRGLL--------SAPQYG--TLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 449 ~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~--------~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
+++ .+..+...|-.-....- +..+...+-..+.. .+|... |+-.+...+-+.|+++.|..+.+
T Consensus 319 ~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId 395 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYID 395 (700)
T ss_pred CCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 654 33334433332221110 11122222112111 135444 33445667778899999999988
Q ss_pred HHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 515 CIVTKGCELNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 515 ~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.++.+ .|+.+ -|-.-.+.+..+|.+++|..++++..+.+ .||..+-..-..-..+....++|.++..+..+.+.+.
T Consensus 396 ~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~ 472 (700)
T KOG1156|consen 396 LAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGA 472 (700)
T ss_pred HHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccch
Confidence 88875 56543 45555678888899999999988887655 4555444455555567788888888887776655411
Q ss_pred ccc--------c-----chhhhhhhhhhHHHHHhhhhhhh
Q 006630 594 QIT--------F-----KMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 594 ~~~--------~-----~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
..- + ..|.++|+|-+|.+=|..+..-.
T Consensus 473 ~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~ 512 (700)
T KOG1156|consen 473 VNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHY 512 (700)
T ss_pred hhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHH
Confidence 111 1 47888899988888776655433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.7e-09 Score=101.42 Aligned_cols=252 Identities=14% Similarity=0.100 Sum_probs=136.1
Q ss_pred hCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 221 KNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
..|+.+.+-.++.+..+. ..++....-+........|+.+.|..-.+++.+.+ +-++........+|.+.|++.....
T Consensus 130 qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~ 208 (400)
T COG3071 130 QRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLA 208 (400)
T ss_pred hcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHH
Confidence 344444444444444332 22233333344444444444444444444444433 2233344444444444444444444
Q ss_pred HHHHHHHcCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 300 LLKEMRRKGCDPNA-------NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD 372 (638)
Q Consensus 300 ~~~~~~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 372 (638)
++..+.+.|.-.|. .+|..+++-....+..+.-...+++.... .+.++..-.+++.-+.+.|+.++|.++..
T Consensus 209 ~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 209 ILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred HHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 44444444433221 34455555555444444444455544332 12344445556666667777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006630 373 SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG 452 (638)
Q Consensus 373 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 452 (638)
+..+++..|.. ...-.+.+.++.+.-.+..+...+.. +.++..+.+|...|.+.+.+.+|...|+...+. .|+
T Consensus 288 ~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s 360 (400)
T COG3071 288 DALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPS 360 (400)
T ss_pred HHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCC
Confidence 76666555441 12223445566666666655554432 344466777777777777777777777766654 477
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
..+|+.+..+|.+.|+..+|.+.+++...
T Consensus 361 ~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 361 ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 77777777777777777777777777654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.7e-10 Score=114.06 Aligned_cols=502 Identities=12% Similarity=0.092 Sum_probs=277.6
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHhccCchhHHH-HHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006630 91 LELALQHSGVVLRPGLTERVINRCGDAGNLGYR-YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169 (638)
Q Consensus 91 ~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 169 (638)
+...++..|+.|+-.++.+++..||.-|+...+ .|-|... ...+..-.+++.++....+.++.+. |
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaatif~fm~~-ksLpv~e~vf~~lv~sh~~And~En------------p 78 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAATIFPFMEI-KSLPVREGVFRGLVASHKEANDAEN------------P 78 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCccccchhhhhc-ccccccchhHHHHHhcccccccccC------------C
Confidence 444556677777766677777777776665332 2333322 2334455667777776666665543 3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHhc----hhCCCCCCHHHH--------------HHHHHHHHhCCCHHHH
Q 006630 170 QLITTEVFVILMRRFASARMVKK---AIEVLDEM----PKYGCEPDEFVF--------------GCLLDALCKNSSVKEA 228 (638)
Q Consensus 170 ~~~~~~~~~~li~~~~~~~~~~~---A~~~~~~m----~~~g~~~~~~~~--------------~~li~~~~~~g~~~~A 228 (638)
..|.+.+|..|..+|...|++.. ..+.+..+ ...|+..-..-+ ...+....-.|.++.+
T Consensus 79 kep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 79 KEPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 34677788888888888887544 22212111 112221111111 2233334445666666
Q ss_pred HHHHHHHhcc--CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 229 AKLFDEMRER--FKPSLRHFTSLLYGWCKEGK-LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 229 ~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
++++..++.. ..|..+ .+.-...... +++-..+.....+ .|+..+|..++..-...|+.+.|..++.+|.
T Consensus 159 lkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 6666555432 111111 1222222222 2222222222222 4888888888888888888999999999998
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH-------------------
Q 006630 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDR------------------- 366 (638)
Q Consensus 306 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~------------------- 366 (638)
+.|++.+..-|-.|+-+ .++..-+..++..|.+.|+.|+..|+...+-.+..+|....
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa 308 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAA 308 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHH
Confidence 88888887766666655 67888888888888888888888887665555544332111
Q ss_pred -----HHHHHHH------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHHHHHHH
Q 006630 367 -----CYEILDS------------MIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG--C-VPDVSNYNVVIR 426 (638)
Q Consensus 367 -----A~~~~~~------------m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~li~ 426 (638)
|.+.++. ..-.|+......|... .-...+|.-++..++-..+.... . ..++..|..++.
T Consensus 309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c-~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr 387 (1088)
T KOG4318|consen 309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMC-EKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR 387 (1088)
T ss_pred hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHH-HHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence 1111111 0001222122222221 12223455555555555443211 1 112333433333
Q ss_pred HHHHcCC----------------------HHHHHHHHHHHHH----------------CCCCC-------CHHHHHHHHH
Q 006630 427 LACKLGE----------------------LKEAVNVWNEMEA----------------ASLSP-------GTDSFVVMVH 461 (638)
Q Consensus 427 ~~~~~g~----------------------~~~A~~~~~~m~~----------------~~~~p-------~~~~~~~li~ 461 (638)
-|.+.-+ ..+..+....... +...| --..-+.++.
T Consensus 388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l 467 (1088)
T KOG4318|consen 388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHL 467 (1088)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHH
Confidence 3332111 1111111111100 00000 0012233444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHccC
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK--GCELNVYAWTIWIHSLFSNG 539 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g 539 (638)
.++..-+..+++..-+.....-+ + ..|..|++-+....+++.|..+.++.... .+..|..-+..+.+.+.+.+
T Consensus 468 ~l~se~n~lK~l~~~ekye~~lf---~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 468 TLNSEYNKLKILCDEEKYEDLLF---A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 45554444555433322222211 2 46778899999999999999999888654 23445667888999999999
Q ss_pred CHHHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc-ccccchhhhhhhhhhHHHHHhhh
Q 006630 540 HVKEACSYCLDMMDAD-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER-QITFKMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~y~~~g~~~~A~~~~~~~ 616 (638)
...++..++.++.+.- ..|+ ..++-.+++.....|+.+.-++.++-+..++-.. ..++.+.-+.++...|.++.+..
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~~ 622 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEPE 622 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchHH
Confidence 9999999999987632 2333 4556777888888899998888888887776544 33456667777777777776665
Q ss_pred hhhhh
Q 006630 617 DGRKR 621 (638)
Q Consensus 617 ~~~~~ 621 (638)
..+.+
T Consensus 623 ~qkyk 627 (1088)
T KOG4318|consen 623 EQKYK 627 (1088)
T ss_pred HHHhc
Confidence 55554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1e-07 Score=95.69 Aligned_cols=436 Identities=11% Similarity=0.110 Sum_probs=250.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC------CCCCHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG------CEPDEFVFG 213 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g------~~~~~~~~~ 213 (638)
.|...+......+-++-+..+|++..+..|. .-.--|..++..++.++|.+.+...+... .+.+...|.
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~~P~-----~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~ 214 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKVAPE-----AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL 214 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhcCHH-----HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH
Confidence 4555666666666666777777766655432 23345556666777777776666554221 133344555
Q ss_pred HHHHHHHhCCCHH---HHHHHHHHHhccCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 214 CLLDALCKNSSVK---EAAKLFDEMRERFKPS-LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289 (638)
Q Consensus 214 ~li~~~~~~g~~~---~A~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 289 (638)
-+-+..++.-+.- ....+++.+..+++.. ...|++|...|.+.|.++.|.++|++....- ....-|..+.++|+
T Consensus 215 elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya 292 (835)
T KOG2047|consen 215 ELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYA 292 (835)
T ss_pred HHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHH
Confidence 5555554432221 2233444444443322 2457777777777777777777777655321 11111111111111
Q ss_pred ------------------------------------------------------------------HcCCHhHHHHHHHH
Q 006630 290 ------------------------------------------------------------------QMGKMTDAFELLKE 303 (638)
Q Consensus 290 ------------------------------------------------------------------~~g~~~~a~~~~~~ 303 (638)
..|+..+-...+.+
T Consensus 293 ~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyte 372 (835)
T KOG2047|consen 293 QFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTE 372 (835)
T ss_pred HHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHH
Confidence 12333344444444
Q ss_pred HHHcCCCCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 304 MRRKGCDPN------ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD---VVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 304 ~~~~g~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
..+. +.|. ...|..+.+.|-..|+++.|..+|++..+...+-- ..+|-.-...=.+..+++.|+++++..
T Consensus 373 Av~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 373 AVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 4433 2221 23456778889999999999999999886542211 245555556666788899999988876
Q ss_pred HHCC----------CCC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006630 375 IQRG----------ILP-------NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437 (638)
Q Consensus 375 ~~~~----------~~p-------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 437 (638)
..-. ..| +...|...++..-..|-++....+++.+.+..+.....+.| ....+-...-++++
T Consensus 452 ~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfees 530 (835)
T KOG2047|consen 452 THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEES 530 (835)
T ss_pred hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHH
Confidence 5321 111 22344555555566788899999999998765433322222 22234456678899
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH--HHHcCCHHHHHH
Q 006630 438 VNVWNEMEAASLSPGT-DSFVVMVHGFLG---QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS--LLRAQKVEMAKD 511 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~--~~~~g~~~~A~~ 511 (638)
.++|++-...--.|+. ..|+..+.-+.+ .-+++.|..+|++.++ +. +|...-+.-|+-+ --+.|....|+.
T Consensus 531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C--pp~~aKtiyLlYA~lEEe~GLar~ams 607 (835)
T KOG2047|consen 531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC--PPEHAKTIYLLYAKLEEEHGLARHAMS 607 (835)
T ss_pred HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC--CHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 9999876655434554 567766655543 3468999999999998 54 4544333223221 124588888999
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 512 VWSCIVTKGCELN--VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT---FAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 512 ~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
+++++... +++. ...||..|.--...=-+.....+|++.++. -||... .......-.+.|..+.|+.++...
T Consensus 608 iyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 608 IYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 99887654 3332 345666664333222233445566666654 455433 223333445678888888888777
Q ss_pred HHHH
Q 006630 587 RKMA 590 (638)
Q Consensus 587 ~~~~ 590 (638)
-+.-
T Consensus 685 sq~~ 688 (835)
T KOG2047|consen 685 SQIC 688 (835)
T ss_pred hhcC
Confidence 6653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.4e-10 Score=120.14 Aligned_cols=266 Identities=8% Similarity=0.021 Sum_probs=183.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH---------hCCCHHHHHHHHHHHhcc
Q 006630 173 TTEVFVILMRRFAS-----ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC---------KNSSVKEAAKLFDEMRER 238 (638)
Q Consensus 173 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~~~~~ 238 (638)
+...|...+++... .+.+++|++.|++..+.. +.+...|..+..+|. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44555555554321 234678999999988763 234456666655443 234578999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHH
Q 006630 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTV 318 (638)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 318 (638)
.|.+...|..+...+...|++++|...|++..+.+ +.+...+..+...+...|++++|...+++..+.... +...+..
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 88899999999999999999999999999998875 445677888888999999999999999999887433 2223334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006630 319 LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPN-QLTYLHIMLAHEKKE 397 (638)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g 397 (638)
++..+...|++++|...++++.....+-+...+..+...+...|+.++|...+.++... .|+ ....+.+...+...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH
Confidence 44456678999999999998876532224556777888888999999999999887654 333 334444555666666
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006630 398 ELEECVELMGEMRKI-GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS 448 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 448 (638)
+.+...++.+.+. ...+....+ +-..|.-.|+.+.+... +++.+.+
T Consensus 490 --~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777767666543 112222222 33345556777776666 7777654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-10 Score=107.57 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=109.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
.+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.. +.+...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence 34444445555555555555555554432 2334455555555666666666666666655543 334455555566666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
..|++++|.+.|++....... +.....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLY-PQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HcccHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 666666666666666543210 1223344445555666666666666666665542 12344555666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
..+++++.+. ...+...+..+...+...|+.+.|..+.+.+.+.
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666666554 1233444555555556666666666666655544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.7e-09 Score=97.11 Aligned_cols=415 Identities=14% Similarity=0.130 Sum_probs=267.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (638)
+...+.+.|++++|...|.-+...+ .++...+..|.-++.-.|.+.+|..+-.... .++..-..|+..--+.|
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhC
Confidence 3456778999999999998887653 3566677777777778899999998877654 33444555666667778
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHHcCCHhHHHHHHH
Q 006630 224 SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL-SGYAQMGKMTDAFELLK 302 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~ 302 (638)
+-++-..+...+... ..---+|.......-.+++|++++.+.... .|+-...|.-+ -+|.+..-++-+.++++
T Consensus 136 dEk~~~~fh~~LqD~----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDT----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred cHHHHHHHHHHHhhh----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 877777666666542 233445555555566789999999999876 45655655544 46677888888999988
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHC
Q 006630 303 EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS-----RKIDRCYEILDSMIQR 377 (638)
Q Consensus 303 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~ 377 (638)
-..+. ++.++...|.......+.=.-..|..-...+.+.+-.. | -.+.-+++. .+.+.|++++-.+.+.
T Consensus 210 vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~ 283 (557)
T KOG3785|consen 210 VYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH 283 (557)
T ss_pred HHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh
Confidence 87765 34344555555444444333333444444444432111 1 123333443 3567788887776653
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHCCCC
Q 006630 378 GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-------ELKEAVNVWNEMEAASLS 450 (638)
Q Consensus 378 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~ 450 (638)
.| ..-..++-.|.+.+++.+|..+.+.+.- ..|-......++ ++..| .+.-|.+.|+..-+.+..
T Consensus 284 --IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~e 355 (557)
T KOG3785|consen 284 --IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALE 355 (557)
T ss_pred --Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccc
Confidence 22 2344566678889999999888766541 122222222222 22222 356677788777655444
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 451 PGT-DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWT 529 (638)
Q Consensus 451 p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 529 (638)
-|. .--.++...+.-..++++.+.++.....--. .|......+..+.+..|++.+|+++|-.+....++ |..+|.
T Consensus 356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~---NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT---NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 333 2344566666667788999888887766542 33333345778889999999999999877654444 555554
Q ss_pred -HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 530 -IWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 530 -~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+..+|.++|+++.|+.++-++ .-..+..+ +..+.+.|.+.+.+=-|.+.+..+-.++|.
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 4568899999999998875443 32233433 445566888889988888888888888875
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=110.24 Aligned_cols=199 Identities=11% Similarity=0.051 Sum_probs=166.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.....+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~ 104 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNN 104 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHH
Confidence 345677888889999999999999999998765 5567888899999999999999999999999876 355667778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGC-ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 574 (638)
+...+...|++++|.+.++++..... ......+..+..++...|++++|...+++.++.. ..+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 88899999999999999999987522 2245567788899999999999999999998653 234567888889999999
Q ss_pred CHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 575 NRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
++++|...++++++..|.++..+ .++...|++++|....+.+...
T Consensus 184 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999999999999977765543 6788899999999988876543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.4e-10 Score=118.42 Aligned_cols=239 Identities=9% Similarity=-0.025 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 364 IDRCYEILDSMIQRGILPNQLTYLHIMLAHE---------KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 364 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
.++|+.+|++..+.... +...+..+..++. ..+++++|...+++..+.+ +.+...+..+...+...|++
T Consensus 277 ~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 277 LQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 45666666666654322 2334443333322 2244778888888887764 55667777777778888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
++|...|++..+.+ +.+...|..+...+...|++++|+..++++++... .+...+..++..+...|++++|...++
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P---~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP---TRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 88888888888775 55567788888888888888888888888888762 222223334445666788888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHH---
Q 006630 515 CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYNRQIAAEITEKVRKMA--- 590 (638)
Q Consensus 515 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~A~~~~~~~~~~~--- 590 (638)
++.....+-+...+..+..+|...|++++|...++++... .|+..+ ...+...+...| +.|...++++++..
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 8776522223445667777888888888888888776543 555544 334444555555 46666666666544
Q ss_pred Hhccccc-chhhhhhhhhhHHHH
Q 006630 591 AERQITF-KMYKRRGERDLKEKA 612 (638)
Q Consensus 591 p~~~~~~-~~y~~~g~~~~A~~~ 612 (638)
|.++... .+|.-.|+-+.+...
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH
Confidence 3333332 577777777777666
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-08 Score=104.45 Aligned_cols=440 Identities=15% Similarity=0.083 Sum_probs=284.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC-CHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP-DEFVFG 213 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~-~~~~~~ 213 (638)
.-+...|..|.-.+.++|+++.+.+.|++..... ....+.|..+...+...|.-..|+.+++.-....-.| |...+-
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~--~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS--FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3577899999999999999999999999887542 2366789999999999999999999998765442224 344444
Q ss_pred HHHHHHHh-CCCHHHHHHHHHHHhc-----cCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 006630 214 CLLDALCK-NSSVKEAAKLFDEMRE-----RFKPSLRHFTSLLYGWCKE-----------GKLVEAKYVLVQMKDAGFEP 276 (638)
Q Consensus 214 ~li~~~~~-~g~~~~A~~~~~~~~~-----~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p 276 (638)
..-..|.+ .+.+++++.+-.++.. ...-....|..+.-+|... -...++++.+++..+.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-T 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 33444443 3666666666555433 1111233444444444322 235688999999988763 2
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356 (638)
Q Consensus 277 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (638)
|+...-.+.--|+..++++.|.+...+..+.+-..+...|..|.-.+...+++.+|+.+.+...+.- ..|......-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 3333333444577888999999999999998667788999999999999999999999999876541 112222222233
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHHcCCH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK--IGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
.-...++.++++.....+..- --+...+. ..++-....+....+.- ........++..+...... +.
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~--we~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~ 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLAL--WEAEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QL 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHH--HHhhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hh
Confidence 334478888888887777642 00000111 11111112222222211 0111122333333222211 11
Q ss_pred HHHHHHHHHHHHCCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 435 KEAVNVWNEMEAASLS--PG------TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~--p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
+.+..-.. ++..-+. |+ ...|......+...+..++|...+.+..... +-....|.-....+...|+.
T Consensus 625 ~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~---~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID---PLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc---hhhHHHHHHhhHHHHHHHhh
Confidence 11100000 2211111 22 2356666777888899999988888887665 24455666666677788999
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACS--YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 583 (638)
++|.+.|...... .| ++.+.+++..++.+.|+..-|.. ++..+++.+ .-++..|..+...+.+.|+.+.|.+.+
T Consensus 701 ~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 701 EEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999988876 34 46678899999999998777777 888888764 446888999999999999999999999
Q ss_pred HHHHHHHHhcccc
Q 006630 584 EKVRKMAAERQIT 596 (638)
Q Consensus 584 ~~~~~~~p~~~~~ 596 (638)
..++++++.+|..
T Consensus 778 ~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 778 QAALQLEESNPVL 790 (799)
T ss_pred HHHHhhccCCCcc
Confidence 9999999988864
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-08 Score=104.35 Aligned_cols=290 Identities=14% Similarity=0.111 Sum_probs=168.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH-HHHHHHh--
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC-LLDALCK-- 221 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~-- 221 (638)
..++...|++++|++.++.-...-. ............+.+.|+.++|..++..+++.+ |+...|.. |..+..-
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3556777888888888876544321 233455666777778888888888888888774 55544443 3333311
Q ss_pred ---CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006630 222 ---NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV-EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297 (638)
Q Consensus 222 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 297 (638)
..+.+....+++++...+|.....-..-+.. .....+. .+...+..+...|+++ +|+.+-..|.......-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~-~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF-LEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhccc-CCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 1246667777777766654322222222222 1212232 3455566667777543 455555555544444455
Q ss_pred HHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 006630 298 FELLKEMRRK----G----------CDPNA--NSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD-VVTYTTLISGFCK 360 (638)
Q Consensus 298 ~~~~~~~~~~----g----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 360 (638)
.+++...... + -+|.. .++..+...|-..|++++|++++++.++. .|+ +..|..-...|-+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh 240 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHH
Confidence 5555554332 1 12233 23455566677777777777777777766 444 4556666677777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHHHcC
Q 006630 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVS------NY--NVVIRLACKLG 432 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~--~~li~~~~~~g 432 (638)
.|++.+|.+.++........ |...=+-.+..+.+.|++++|.+++....+.+..|... .| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777777665433 55555556666677777777777777766554322111 11 23345667777
Q ss_pred CHHHHHHHHHHHH
Q 006630 433 ELKEAVNVWNEME 445 (638)
Q Consensus 433 ~~~~A~~~~~~m~ 445 (638)
++..|++.|..+.
T Consensus 320 ~~~~ALk~~~~v~ 332 (517)
T PF12569_consen 320 DYGLALKRFHAVL 332 (517)
T ss_pred hHHHHHHHHHHHH
Confidence 7777766665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-07 Score=94.23 Aligned_cols=422 Identities=10% Similarity=0.047 Sum_probs=249.5
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 006630 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226 (638)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (638)
.+...|+-++|........+.++ -+...|..+.-.+-...++++|+..|....+.+ +.|...+.-|--.-++.++++
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~ 126 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYE 126 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhh
Confidence 34566778888887777666543 355566666666666778888888888887765 456667766666666677777
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHHHcCCHhHHHH
Q 006630 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVVYNNLL------SGYAQMGKMTDAFE 299 (638)
Q Consensus 227 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll------~~~~~~g~~~~a~~ 299 (638)
.....-....+..+.....|...+.++--.|+...|..++++..+.. -.|+...|.-.. ....+.|..+.|.+
T Consensus 127 ~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 127 GYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 77666666666556677888888888888899999988888887654 245655554332 23455677777777
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHH-HHHHHHHHC
Q 006630 300 LLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS-GFCKSRKIDRCY-EILDSMIQR 377 (638)
Q Consensus 300 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~-~~~~~g~~~~A~-~~~~~m~~~ 377 (638)
.+..-... +......-..-.+.+.+.+++++|..++..+... .||...|+.... ++.+-.+.-+++ .+|....+.
T Consensus 207 ~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 207 HLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred HHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 76655443 2212333345566788889999999999998877 577666665444 333344444444 555555443
Q ss_pred CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHCC----
Q 006630 378 GILPNQLTYLHI-MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVN----VWNEMEAAS---- 448 (638)
Q Consensus 378 ~~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~~---- 448 (638)
- |....-..+ +.......-.+..-+++....+.|+++-. ..+...|-.-...+--.+ +...+...|
T Consensus 284 y--~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 284 Y--PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred C--cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 1 111110000 11111122233344555666666655433 233332322111111111 111111110
Q ss_pred ------CCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 449 ------LSPGTDSFV--VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 449 ------~~p~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
-+|....|. .++..|-..|+++.|..+++..++.. |+ ...|..=.+.+.+.|++++|..++++..+.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT----PTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT----PTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC----chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 145555444 56777888888888888888887764 54 334444456778888888888888888776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH--------HHHHH--HHHHHhhcCHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD--------TFAKL--MRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------t~~~l--l~~~~~~g~~~~A~~~~~~~ 586 (638)
+ .||...=.--+.-..++.+.++|.+++....+.|. +.. .|-.+ ..+|.++|++..|.+=+..+
T Consensus 435 D-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 435 D-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred c-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 3 33443333445556677888888888777766653 221 12222 33566666666665444433
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-10 Score=105.97 Aligned_cols=242 Identities=11% Similarity=0.103 Sum_probs=197.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 426 (638)
|-.--+.|..+|.+.|.+.+|.+.|+.-.+. .|-+.||..+-.+|.+..+.+.|+.++.+-.+. ++.|+.....+.+
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQAR 298 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHH
Confidence 3344467888899999999999998888775 455668888888999999999999999888775 2444444455667
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
.+-..++.++|.++|+...+.. +.+++...++..+|.-.++++-|+.+|+++++.|+ .+...|+.+.-+|.-.+++
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~---~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA---QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC---CChHHHhhHHHHHHhhcch
Confidence 7888899999999999998876 67778888888999999999999999999999996 6777888998899999999
Q ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELN--VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
|.+..-|.++....-.|+ ...|-.+.......|++..|.+.|+-.+..+ ..+...+++|.-.-.+.|+.++|+.++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 999999998877633344 5678888888889999999999998887653 2345678888888888899999999999
Q ss_pred HHHHHHHhcccc
Q 006630 585 KVRKMAAERQIT 596 (638)
Q Consensus 585 ~~~~~~p~~~~~ 596 (638)
-+....|+-.+.
T Consensus 454 ~A~s~~P~m~E~ 465 (478)
T KOG1129|consen 454 AAKSVMPDMAEV 465 (478)
T ss_pred HhhhhCcccccc
Confidence 999888875443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-07 Score=94.99 Aligned_cols=148 Identities=14% Similarity=0.162 Sum_probs=101.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCCcHHHHHHHHHHHHHcC
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK--------EMVGRGLLSAPQYGTLKALLNSLLRAQ 504 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~~~p~~~~~~~ll~~~~~~g 504 (638)
...+|..++...-+..-.........++.....+|+++.|++++. .+.+.+. .| .+...+...+.+.+
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P--~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LP--GTVGAIVALYYKIK 431 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--Ch--hHHHHHHHHHHhcc
Confidence 466777777777665422224566677788888999999999988 4444442 24 35556667788888
Q ss_pred CHHHHHHHHHHHHHc--CCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 505 KVEMAKDVWSCIVTK--GCELNVY----AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~--~~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
+-+.|..++.+++.. .-.+... .|.-.+..-.+.|+.++|..+++++.+.. .+|..+...++.+|+. =|.+.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~-~d~ek 509 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYAR-LDPEK 509 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHh-cCHHH
Confidence 888888888877653 1122222 33334444567799999999999998743 6778888888888876 47788
Q ss_pred HHHHHHHH
Q 006630 579 AAEITEKV 586 (638)
Q Consensus 579 A~~~~~~~ 586 (638)
|+.+-+++
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 88776544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=8e-11 Score=108.07 Aligned_cols=235 Identities=8% Similarity=-0.020 Sum_probs=200.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 380 LPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM 459 (638)
Q Consensus 380 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (638)
..|...-+-+..+|.+.|-+.+|...++...+. .|-+.||-.|-+.|.+..+++.|+.+|.+-.+.- +-|+....-+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-Cchhhhhhhh
Confidence 334555567888999999999999999988876 5777788889999999999999999999988763 4455455567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG 539 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 539 (638)
...+...++.++|.++|+...+.. +.+......+...|.-.++.+.|.++|+++++.|.. +...|+.+.-+|...+
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQ 372 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhc
Confidence 788888999999999999999876 456667777778888999999999999999999876 8889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc----hhhhhhhhhhHHHHH
Q 006630 540 HVKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK----MYKRRGERDLKEKAK 613 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~y~~~g~~~~A~~~~ 613 (638)
+++-++.-|++.+..--.|+ ..+|.++.......||+..|.+.++-++..+|++...++ +-.+.|+.++|..++
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 99999999999987544565 567999999999999999999999999999999999984 446889999999999
Q ss_pred hhhhhhhh
Q 006630 614 KQVDGRKR 621 (638)
Q Consensus 614 ~~~~~~~~ 621 (638)
.......+
T Consensus 453 ~~A~s~~P 460 (478)
T KOG1129|consen 453 NAAKSVMP 460 (478)
T ss_pred HHhhhhCc
Confidence 88766544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-10 Score=119.22 Aligned_cols=249 Identities=17% Similarity=0.227 Sum_probs=143.8
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006630 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC 344 (638)
Q Consensus 265 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (638)
++-.+...|+.|+.+||..+|.-||..|+.+.|- +|..|.-...+.+..+++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566666777777777777777777776666 6666666656666666666666666666665554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HH-------HCC-----------------CCCCHHHHHHHHHHHHhcCCH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDS-MI-------QRG-----------------ILPNQLTYLHIMLAHEKKEEL 399 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~~-----------------~~p~~~t~~~ll~~~~~~g~~ 399 (638)
.|...+|..|..+|...||... ++..++ |. ..| ..||..+ .+.-..-.|.+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglw 155 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLW 155 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHH
Confidence 4566667777777777666543 222221 11 111 2222222 12222233445
Q ss_pred HHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 400 EECVELMGEMRKIG-CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKE 478 (638)
Q Consensus 400 ~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 478 (638)
+.+.+++..+.... ..|..+ +++-+.. .....+++.+......-.|+..+|..++..-...|+.+.|..++.+
T Consensus 156 aqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~e 229 (1088)
T KOG4318|consen 156 AQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYE 229 (1088)
T ss_pred HHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 55555544432221 011111 1222221 1223333333333221147888888888888888888888888888
Q ss_pred HHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC
Q 006630 479 MVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540 (638)
Q Consensus 479 m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 540 (638)
|.+.|+ +.+..-|..|+-+ .++..-++.++..|...|+.|+..|+.-.+-.+..+|.
T Consensus 230 mke~gf--pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 230 MKEKGF--PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHHcCC--Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888887 3444444455532 77777788888888888888888888877777777665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-09 Score=110.83 Aligned_cols=244 Identities=15% Similarity=0.098 Sum_probs=142.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHC-----C--C
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQR-----G-ILPNQLTY-LHIMLAHEKKEELEECVELMGEMRKI-----G--C 414 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~ 414 (638)
.+...+...|...|++++|..+++...+. | ..|...+. +.+...|...+++++|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44555777788888888888888776653 2 12222222 23555667777777777777776541 2 1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA-----S-LSPGT-DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-S 486 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~ 486 (638)
+.-..+++.|..+|.+.|++++|...++...+. + ..|.+ ..++.++..++..+++++|..++....+.-.. +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 112344555556677777777777777765421 1 11222 23445566666677777777777766542110 0
Q ss_pred CCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC--CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh--
Q 006630 487 APQ----YGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GC--ELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMD-- 553 (638)
Q Consensus 487 ~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~--~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-- 553 (638)
.++ ..+++.|...|.+.|++++|.++|++++.. +. .+. ...++.|...|.+.+++++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 122 345666777777777777777777776654 11 111 33456666677777777777777766432
Q ss_pred --CCC-CCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 554 --ADV-MPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 554 --~~~-~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.|. .|+ ..+|..|..+|...|+++.|+++.+++....-+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 221 233 234677777777777777777777777655433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-07 Score=94.66 Aligned_cols=422 Identities=11% Similarity=0.052 Sum_probs=250.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH--HHHHHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC--LLDALC 220 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~--li~~~~ 220 (638)
+=++.+...+++++|.....++....|. +...+..-+-++++.+++++|+.+.+.-.. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~pd--d~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIVPD--DEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcCCC--cHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence 3467888999999999999999988765 666777778888999999999966554221 112222 244555
Q ss_pred --hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHhH
Q 006630 221 --KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV--VYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 221 --~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~g~~~~ 296 (638)
+.+..++|+..++.... .+..+...-...+.+.|++++|+++|+.+.+.+. +|.. .-..++.+-. --.
T Consensus 89 ~Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~-dd~d~~~r~nl~a~~a----~l~ 160 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS-DDQDEERRANLLAVAA----ALQ 160 (652)
T ss_pred HHHcccHHHHHHHHhcccc---cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHH----hhh
Confidence 67999999999884332 2455677777889999999999999999987753 2221 1111211111 111
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHcCC------CCC-HH-------HHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVL---IQALCRMEKMEEANRAFVEMERSGC------EAD-VV-------TYTTLISGFC 359 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~------~~~-~~-------~~~~li~~~~ 359 (638)
+. .+......| ..+|..+ ...+...|++.+|++++....+.+. .-+ .. .--.|.-.+.
T Consensus 161 ~~----~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ----LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH----HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 122222233 3344433 3356678999999999998843211 111 11 1122444567
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHhcCCHHH--HHHHHHHHHH-----------CCCCCCHHHHH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTY----LHIMLAHEKKEELEE--CVELMGEMRK-----------IGCVPDVSNYN 422 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~g~~~~--a~~~~~~~~~-----------~~~~~~~~~~~ 422 (638)
..|+.++|..++...++.... |.... |.++ +.....++-. ++..++.... ..-......-+
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~ 313 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN 313 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999987543 44222 2222 2222111111 1111111110 00011112223
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCCcH--HHHHHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQY--GTLKALLNS 499 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~p~~--~~~~~ll~~ 499 (638)
.++.+|. +..+.+.++....... .|....=+.+..+.. +.....+|.+++...-+.. |.. .+....+..
T Consensus 314 ~lL~l~t--nk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~----p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 314 ALLALFT--NKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGH----PEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHh--hhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccC----CchhHHHHHHHHHH
Confidence 4444444 4445565555544432 344433333333332 2335778888888777664 433 344455666
Q ss_pred HHHcCCHHHHHHHHH--------HHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHH----HHHH
Q 006630 500 LLRAQKVEMAKDVWS--------CIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD--ADVMPQPD----TFAK 565 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~----t~~~ 565 (638)
....|+++.|.+++. .+.+.+..|.. ..+++..+.+.++.+.|..++.+.+. ..-.+... ++.-
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~ 463 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMRE 463 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHH
Confidence 778999999999999 55554445554 44566777777777777777766653 11122222 2333
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+...-.+.|+.++|...++++++.+|++..++
T Consensus 464 aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l 495 (652)
T KOG2376|consen 464 AAEFKLRHGNEEEASSLLEELVKFNPNDTDLL 495 (652)
T ss_pred HhHHHHhcCchHHHHHHHHHHHHhCCchHHHH
Confidence 33333566999999999999999999988763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-08 Score=102.85 Aligned_cols=297 Identities=17% Similarity=0.152 Sum_probs=215.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 006630 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254 (638)
Q Consensus 176 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (638)
........+...|++++|++.++.-... .+|. .........+.+.|+.++|..++..+.++.|.|...|..+..+..
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 3344556677899999999999875543 4554 566777889999999999999999999998989999998888874
Q ss_pred hcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 255 KEG-----KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM-TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 255 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
... +.+...++++++...- |......-+.-.+..-..+ ..+...+..+...|+++ +|+.|-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 433 5677888899887653 4333332222222221122 34556667777788663 56677777776666
Q ss_pred HHHHHHHHHHHHHc----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 329 MEEANRAFVEMERS----G----------CEADVV--TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392 (638)
Q Consensus 329 ~~~A~~~~~~m~~~----g----------~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 392 (638)
.+-...++...... + -.|... ++.-+...|...|++++|+++++..++..+. .+..|..-...
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHH
Confidence 66566666665432 1 134443 4456677888999999999999999986432 36678888889
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------HH--HHHHHHHH
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD------SF--VVMVHGFL 464 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~--~~li~~~~ 464 (638)
+-+.|++.+|.+.++...+.. .-|..+-+-.+..+.++|++++|.+++......+..|-.. .| .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999876 5677888888899999999999999999998776433221 22 34467889
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006630 465 GQGCLIEACEYFKEMVG 481 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~ 481 (638)
+.|++..|++.|....+
T Consensus 317 r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999887766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-08 Score=100.67 Aligned_cols=418 Identities=12% Similarity=0.096 Sum_probs=274.0
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH
Q 006630 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD-IVVY 281 (638)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~ 281 (638)
..+.-|..+|..|.-++..+|+++.+.+.|++.....-.....|+.+...|...|....|..++++-......|+ ...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 345568899999999999999999999999987665455778899999999999999999999988765532343 3344
Q ss_pred HHHHHHHHH-cCCHhHHHHHHHHHHHc--CC--CCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCC-
Q 006630 282 NNLLSGYAQ-MGKMTDAFELLKEMRRK--GC--DPNANSYTVLIQALCRM-----------EKMEEANRAFVEMERSGC- 344 (638)
Q Consensus 282 ~~ll~~~~~-~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~- 344 (638)
-..-..|.+ .+..+++...-.+.... +. ......|..+.-+|... ....++.+.+++..+.+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 444444443 46777777776666652 11 11234444444444322 124567777888776542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV 424 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 424 (638)
.|++.-| +.--|+..++.+.|++...+..+-+..-+...|..+...+...+++.+|+.+.+...+.- ..|......-
T Consensus 477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~ 553 (799)
T KOG4162|consen 477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGK 553 (799)
T ss_pred CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhh
Confidence 3333333 333477788999999999999988667788899999889999999999999988765431 1111111111
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC---------------------CC------CCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 006630 425 IRLACKLGELKEAVNVWNEMEAA---------------------SL------SPG-TDSFVVMVHGFLGQGCLIEACEYF 476 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~---------------------~~------~p~-~~~~~~li~~~~~~g~~~~A~~~~ 476 (638)
+..-...++.++|......+... |. +.+ ..++..+..-... +.+.+..-.
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~ 631 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSEL 631 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhccccc
Confidence 22222345555555444333210 00 001 1122221111111 111110000
Q ss_pred HHHHhCCCCCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 006630 477 KEMVGRGLLSAPQ------YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD 550 (638)
Q Consensus 477 ~~m~~~~~~~~p~------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 550 (638)
. +......+.|+ ...|......+.+.+..++|...+.++.+. ..-....|......+...|+.++|.+.|..
T Consensus 632 ~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~ 709 (799)
T KOG4162|consen 632 K-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLV 709 (799)
T ss_pred c-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence 0 11111112233 123445556677889999998888887665 233455677777888899999999999988
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhhcCHHHHHH--HHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 551 MMDADVMPQP-DTFAKLMRGLKKLYNRQIAAE--ITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 551 m~~~~~~p~~-~t~~~ll~~~~~~g~~~~A~~--~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
.+. +.|+. ....++...+.+.|+...|.. ++..+++.+|.++.++ .+..+.|+.+.|.+.|+..-......
T Consensus 710 Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 710 ALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred HHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 875 47765 468889999999999988888 9999999999999986 68999999999999999988887777
Q ss_pred hhhhcc
Q 006630 624 RQRRWG 629 (638)
Q Consensus 624 ~~~~~~ 629 (638)
+=+.|.
T Consensus 788 PV~pFs 793 (799)
T KOG4162|consen 788 PVLPFS 793 (799)
T ss_pred Cccccc
Confidence 766654
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.8e-08 Score=97.14 Aligned_cols=419 Identities=12% Similarity=0.050 Sum_probs=248.1
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCC
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSS 224 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~ 224 (638)
+.....|+++.|+.+|.+....+|. |...|..=..+|+..|++++|++=-.+-.+. .|+- -.|.-+..++.-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~--nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT--NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC--ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 4566788999999999888887764 7777888888899999999888776665554 5653 578888888888899
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHHcCCHhHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS-----GYAQMGKMTDAFE 299 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-----~~~~~g~~~~a~~ 299 (638)
+++|+.-|.+-.+..+.|...++.+..++. .+.+. +.. -.++..|..+.. .+...-.+. .
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~---~ 150 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYV---K 150 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHH---H
Confidence 999999998888877888888888888871 11111 110 112222222111 111111111 1
Q ss_pred HHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCC----------------------CHHHH
Q 006630 300 LLKEMRRK----GCDP-NANSYTVLIQALCRMEKMEEANRAFVEME-RSGCEA----------------------DVVTY 351 (638)
Q Consensus 300 ~~~~~~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~~----------------------~~~~~ 351 (638)
+++.+.+. +... |.....++.... ..+.. ....-..+. ..+..| -..-.
T Consensus 151 ~l~~~~~~p~~l~~~l~d~r~m~a~~~l~-~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~e 227 (539)
T KOG0548|consen 151 ILEIIQKNPTSLKLYLNDPRLMKADGQLK-GVDEL--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKE 227 (539)
T ss_pred HHHHhhcCcHhhhcccccHHHHHHHHHHh-cCccc--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHH
Confidence 11111111 0000 111111111000 00000 000000000 000000 01123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------H
Q 006630 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNV-------V 424 (638)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l 424 (638)
..+.++..+..+++.|++-+....... -+..-++....++...|.+.++...-....+.|.. ...-|+. +
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence 456666677777888888777777654 24445555666777777777777666665554421 1122222 2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH-HHHHHHHHHHHHc
Q 006630 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY-GTLKALLNSLLRA 503 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-~~~~~ll~~~~~~ 503 (638)
..+|.+.++++.|+..|.+.......|+. ..+....++++...+...-.+ |.. .-...-.+.+.+.
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~----pe~A~e~r~kGne~Fk~ 371 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN----PEKAEEEREKGNEAFKK 371 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC----hhHHHHHHHHHHHHHhc
Confidence 33566677788888888876654333322 222333455555444444333 322 1222235667788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhhcCHHHHHHH
Q 006630 504 QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT-FAKLMRGLKKLYNRQIAAEI 582 (638)
Q Consensus 504 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~A~~~ 582 (638)
|++..|++.|.++++.. +-|...|..-.-+|.+.|.+.+|+.-.+..++. .|+... |..=+.++....+++.|.+.
T Consensus 372 gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAlea 448 (539)
T KOG0548|consen 372 GDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEA 448 (539)
T ss_pred cCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988875 336778888888999999999998888777765 555443 65556667777889999999
Q ss_pred HHHHHHHHHhcccccchhhhhhh
Q 006630 583 TEKVRKMAAERQITFKMYKRRGE 605 (638)
Q Consensus 583 ~~~~~~~~p~~~~~~~~y~~~g~ 605 (638)
++++++.+|++..+.+-|.++.+
T Consensus 449 y~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 449 YQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHhcCchhHHHHHHHHHHHH
Confidence 99999999998888877766665
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-09 Score=106.59 Aligned_cols=232 Identities=19% Similarity=0.202 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCC
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKI-----GC-VPDV-SNYNVVIRLACKLGELKEAVNVWNEMEAA-----S-LSP 451 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p 451 (638)
+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++++|..+|+++... | ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444555555555555555555554332 10 1111 11222344555555555555555554321 1 011
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Q 006630 452 G-TDSFVVMVHGFLGQGCLIEACEYFKEMVGR-----GLLSAPQ-YGTLKALLNSLLRAQKVEMAKDVWSCIVTK---GC 521 (638)
Q Consensus 452 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~p~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~ 521 (638)
. ..+++.|...|.+.|++++|..++++.++- +.. .|. ...++.+...|...+++++|..++....+. -+
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 234445555555555555555555544321 110 122 223344444555555555555555544332 11
Q ss_pred CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 522 ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDA-----D-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 522 ~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.++ ..+++.|...|...|++++|.+++++++.. | ..+. ...++.+...|...++++.|.+++++.....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 234555555555555555555555555431 1 1111 2234455555555555555555555554332
Q ss_pred ----Hhccccc-------chhhhhhhhhhHHHHHhhhh
Q 006630 591 ----AERQITF-------KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 591 ----p~~~~~~-------~~y~~~g~~~~A~~~~~~~~ 617 (638)
|+++... .+|..+|++++|.++-+++.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 3333321 35555555555555555533
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.9e-11 Score=83.64 Aligned_cols=50 Identities=36% Similarity=0.741 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 241 PSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 241 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56777777777777777777777777777777777777777777777653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.9e-08 Score=92.95 Aligned_cols=290 Identities=11% Similarity=0.046 Sum_probs=203.4
Q ss_pred cCCHHHHHHHHHhchhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 187 ARMVKKAIEVLDEMPKY-GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265 (638)
Q Consensus 187 ~~~~~~A~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 265 (638)
.++...|.+.+-.+... -++.|+.....+.+.+...|+.++|+..|++...-.|.++.......-.+.+.|+.+....+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 45555555554433322 35667778888888899999999999999888766555555555555666778888887777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 266 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
...+.... .-....|-.-+......+++..|+.+-++.++.... +...|-.-...+...|+.++|.-.|+...... +
T Consensus 289 ~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p 365 (564)
T KOG1174|consen 289 MDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-P 365 (564)
T ss_pred HHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-h
Confidence 77776432 123334444445555667888888888887765322 44445445567778889999999998877652 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIM-LAHE-KKEELEECVELMGEMRKIGCVPDVSNYNV 423 (638)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 423 (638)
-+...|.-|+..|...|++.+|..+-+...+. +..+..+.+.+. ..|. ....-++|..+++...+.. |.-....+.
T Consensus 366 ~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~ 443 (564)
T KOG1174|consen 366 YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNL 443 (564)
T ss_pred hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHH
Confidence 46788999999999999999988777666553 233555555542 3332 2334577888888877653 223455567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 424 VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
+...+...|..++++.+++..... .||....+.|.+.+...+.+++|++.|...++.+
T Consensus 444 ~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 444 IAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 777888889999999999888764 6888889999999999999999999998888876
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=8.5e-08 Score=89.47 Aligned_cols=453 Identities=10% Similarity=0.071 Sum_probs=269.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
+.-+....++..|+.+++--...+.. -...+-..+..++...|++++|+..+..+.... .++...+..|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHH
Confidence 55566677888898888766544321 122233335556668899999999888776543 5666667667666666788
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
+.+|..+-....+ +...-..|.....+.|+-++-..+-..+... ..---+|.......-.+.+|++++...
T Consensus 107 Y~eA~~~~~ka~k----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHhhCCC----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655443 5555666677777778777766666555432 122233444444445788888888888
Q ss_pred HHcCCCCCHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 305 RRKGCDPNANSYTVLI-QALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383 (638)
Q Consensus 305 ~~~g~~~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 383 (638)
... .|+-...|..+ -+|.+..-++-+.++++-..+. ++.++...|.......+.=+..-|..-...+...+-..
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 765 33444444333 3566777777788877776655 13344556655554444333333444444444433211
Q ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 384 LTYLHIMLAHEKK-----EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV 458 (638)
Q Consensus 384 ~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 458 (638)
| ..+.-+++. .+-+.|++++-.+.+. .|.. --.|+-.|.+.+++.+|..+..++. +.++.-|..
T Consensus 253 --~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Eyil 321 (557)
T KOG3785|consen 253 --Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYIL 321 (557)
T ss_pred --c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcC----CCChHHHHH
Confidence 1 122223332 2446677777666543 2322 2334556889999999998877764 323333332
Q ss_pred HHHHHHhcCC-------HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 459 MVHGFLGQGC-------LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 459 li~~~~~~g~-------~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
-...++..|+ ..-|.+.|...=+.+.. ..+...-.++.+.+.-..++++..-+++.+...-..-|...+ .+
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~e-cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~ 399 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALE-CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NL 399 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HH
Confidence 2222333332 34455555433333331 112222345666677778889999888888776333344444 47
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhhcCHHHHHHHHHHHHHHHHhccc-c-c----chhhhhh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR-GLKKLYNRQIAAEITEKVRKMAAERQI-T-F----KMYKRRG 604 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~~~~A~~~~~~~~~~~p~~~~-~-~----~~y~~~g 604 (638)
..+++..|.+.+|.++|-......+ .|..+|.+++. .|...++.+.| |+..++.+..... . + +...++|
T Consensus 400 AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lA---W~~~lk~~t~~e~fsLLqlIAn~CYk~~ 475 (557)
T KOG3785|consen 400 AQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLA---WDMMLKTNTPSERFSLLQLIANDCYKAN 475 (557)
T ss_pred HHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHH---HHHHHhcCCchhHHHHHHHHHHHHHHHH
Confidence 7899999999999999977654432 45666666555 55666777665 4555666533222 2 1 6778899
Q ss_pred hhhhHHHHHhhhhhhhhhhhhhhccCCc
Q 006630 605 ERDLKEKAKKQVDGRKRRARQRRWGGGR 632 (638)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 632 (638)
++=-|.+.|+.++...+. ..-|.|-+
T Consensus 476 eFyyaaKAFd~lE~lDP~--pEnWeGKR 501 (557)
T KOG3785|consen 476 EFYYAAKAFDELEILDPT--PENWEGKR 501 (557)
T ss_pred HHHHHHHhhhHHHccCCC--ccccCCcc
Confidence 999999999988776553 33455543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.3e-11 Score=81.94 Aligned_cols=49 Identities=41% Similarity=0.722 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394 (638)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 394 (638)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555544
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-08 Score=89.45 Aligned_cols=206 Identities=15% Similarity=0.064 Sum_probs=162.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
+..-+...|...|+...|..-+++.++.. +.+..++..+...|-+.|+.+.|.+-|++..... +.+....|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 44556677888888888888888888875 5566778888888889999999999999888775 566678888888889
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
.+|++++|...|++.+....- .--..||..+.-+..+.|+.+.|.+.|++.++.... ...+.-.+.......|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y-~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAY-GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCC-CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 999999999999988875322 122457777777777899999999999998887322 455666778888889999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+++.....+ .++...+...+..-...||.+.+-++-..+....|..+.
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99888887655 488888877888888889998888888888887776554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-07 Score=99.14 Aligned_cols=163 Identities=10% Similarity=-0.020 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC-CCCCHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG-CEPDEFVFGCLLD 217 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~~~~~~li~ 217 (638)
.+|..|...|...-+...|.+.|+.....++. +..........|++...++.|..+.-..-+.. ...-..-|....-
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat--daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT--DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch--hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 35666666666666666666666666665543 45556666666666666666666522211110 0001112222334
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV-VYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~ 296 (638)
.|.+.++...|..-|+....-.|.|...|..++.+|..+|++..|.++|.+.... .|+.. .---....-+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 4555666666666666665555666666666666666666666666666665543 23221 11111222344555555
Q ss_pred HHHHHHHHH
Q 006630 297 AFELLKEMR 305 (638)
Q Consensus 297 a~~~~~~~~ 305 (638)
+...++...
T Consensus 649 ald~l~~ii 657 (1238)
T KOG1127|consen 649 ALDALGLII 657 (1238)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.2e-08 Score=99.85 Aligned_cols=220 Identities=10% Similarity=0.008 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006630 362 RKIDRCYEILDSMIQRG-ILPN--QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAV 438 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~-~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 438 (638)
+..+.++.-+.+++... ..|+ ...|......+...|+.++|...|....+.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555432 1121 2345555556666777777777777766654 445667777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
..|+...+.+ +-+...|..+...+...|++++|++.|+...+.. |+..........+...++.++|...|.+...
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 7777777654 3445667777777777777788877777777665 3221111111223345677777777766543
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC---C--CCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA---D--VMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
. ..|+...| .......|+..++ ..++.+.+. . +.| ....|..+...+.+.|++++|+..++++++.+|.
T Consensus 194 ~-~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 194 K-LDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred h-CCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 2 12222112 2222334554433 233343321 0 011 2346777788888888888888888888888763
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.1e-07 Score=97.96 Aligned_cols=449 Identities=11% Similarity=0.010 Sum_probs=274.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006630 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLF 232 (638)
Q Consensus 153 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 232 (638)
+...|+..|-+..+.++. =...|..|...|....+...|.+.|+...+.+ ..|......+.+.|+...+++.|..+.
T Consensus 473 ~~~~al~ali~alrld~~--~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS--LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 377788887777776644 34578889999988889999999999988765 567788999999999999999999985
Q ss_pred HHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 006630 233 DEMRERFKPSL--RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310 (638)
Q Consensus 233 ~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 310 (638)
-...+..+.-. ..|.-..-.|.+.++...|..-|+...+.. +.|...|..+..+|...|.+..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 44444322222 234445667888999999999999998775 567889999999999999999999999988765 3
Q ss_pred CCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH-------HHH
Q 006630 311 PNA-NSYTVLIQALCRMEKMEEANRAFVEMERSG-----CEAD-VVTYTTLISGFCKSRKIDRCYEILDS-------MIQ 376 (638)
Q Consensus 311 ~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~-------m~~ 376 (638)
|+. ..---...+-|..|.+.+|...+..+.... ...+ ..++-.+...+.-.|-..+|.++++. ...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 432 222223335677899999998887765421 0111 22333333333333333333333333 222
Q ss_pred CCCCCCHHHHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 377 RGILPNQLTYLHIMLAHE-----------------------KKEEL---E---ECVELMGEMRKIGCVPDVSNYNVVIRL 427 (638)
Q Consensus 377 ~~~~p~~~t~~~ll~~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~li~~ 427 (638)
.....+...|..+-++|. ..+.. + -|.+.+-.-.+ +..+..+|..|+..
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN 784 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence 221112222222222221 11111 1 01111111111 11223334344333
Q ss_pred HHH----cC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH
Q 006630 428 ACK----LG----ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS 499 (638)
Q Consensus 428 ~~~----~g----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~ 499 (638)
|.+ +| +...|...+.+..+.. ..+...|+.|... ...|++.-|...|-+-.... +....+|..+.-.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se---p~~~~~W~NlgvL 859 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE---PTCHCQWLNLGVL 859 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc---ccchhheecccee
Confidence 332 22 2235677777766654 4566788877665 66678888887777666554 3456677777777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH--HHh--CCCCCCHHHHHHHHHHHHhhcC
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLD--MMD--ADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
|....+++.|...|....... +.|...|--........|+.-++..+|.. ... .|-.|+..-|.....--...|+
T Consensus 860 ~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~ 938 (1238)
T KOG1127|consen 860 VLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGN 938 (1238)
T ss_pred EEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccc
Confidence 788888999999998887763 22566776666666677887777777765 222 3445555555544444444455
Q ss_pred HHHHHHHHH----------HHHHHHHhccccc----chhhhhhhhhhHHHHHhh
Q 006630 576 RQIAAEITE----------KVRKMAAERQITF----KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 576 ~~~A~~~~~----------~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~ 615 (638)
.+.-+...+ +.++-.|+...++ .+..+.+.+.+|.+...+
T Consensus 939 ~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 939 IEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred hHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 544443333 3344445554444 355667777777776665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-08 Score=96.21 Aligned_cols=402 Identities=11% Similarity=0.048 Sum_probs=246.3
Q ss_pred HHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 182 RRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261 (638)
Q Consensus 182 ~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (638)
.+....|+++.|+..|...+... ++|.+.|..=..+|++.|++++|.+=-.+-.+..|.-...|+-...++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 45567899999999999887765 56788888889999999999988876555555445556788999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHH-----HHHHhcCCHHHHHHHH
Q 006630 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI-----QALCRMEKMEEANRAF 336 (638)
Q Consensus 262 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~ 336 (638)
|+..|.+-++.. +-+...++.+..++.. +.+. +... .+...|..+. +.+...-.+.. ++
T Consensus 89 A~~ay~~GL~~d-~~n~~L~~gl~~a~~~----~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~~---~l 152 (539)
T KOG0548|consen 89 AILAYSEGLEKD-PSNKQLKTGLAQAYLE----DYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYVK---IL 152 (539)
T ss_pred HHHHHHHHhhcC-CchHHHHHhHHHhhhH----HHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHHH---HH
Confidence 999999888764 4455667777766611 1111 1110 1112221111 11111111111 11
Q ss_pred HHHHHcCCCCC-HHH---HHHHHHHHHhcCCHHH-HHHHHHHHHH-CCCCC----------------------CHHHHHH
Q 006630 337 VEMERSGCEAD-VVT---YTTLISGFCKSRKIDR-CYEILDSMIQ-RGILP----------------------NQLTYLH 388 (638)
Q Consensus 337 ~~m~~~g~~~~-~~~---~~~li~~~~~~g~~~~-A~~~~~~m~~-~~~~p----------------------~~~t~~~ 388 (638)
..+.. .|. +.. ...++.+.......+. .+..-..+.. .+..| -..-...
T Consensus 153 ~~~~~---~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 153 EIIQK---NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHhhc---CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 11111 010 000 0011111111000000 0000000000 00001 1122445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHH
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVV-------MVH 461 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------li~ 461 (638)
+.++..+..+++.+.+-+....+.. .+..-++....+|...|.+.+....-+...+.|- -...-|+. +..
T Consensus 230 lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 230 LGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhh
Confidence 6667777788888888888887754 4555556666788888888877777776665541 12222332 334
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCC
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV-YAWTIWIHSLFSNGH 540 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~ 540 (638)
+|.+.++++.|+.+|.+.+.... .|+. ..+....+++....+...-. .|+. .--..-...+.+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~R--t~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHR--TPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhc--CHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccC
Confidence 56667788888888888776543 3332 23344455555555544433 3332 112223677889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 541 VKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
+..|+..|.+++... +-|...|....-+|.+.|++..|..-.++.++++|+....+ .++....+|++|.+.|++-
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999874 33567799999999999999999999999999999988876 5888999999999999985
Q ss_pred hhhh
Q 006630 617 DGRK 620 (638)
Q Consensus 617 ~~~~ 620 (638)
.+..
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 5444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.1e-08 Score=93.68 Aligned_cols=220 Identities=12% Similarity=0.022 Sum_probs=142.6
Q ss_pred cCChhHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006630 151 MRKFGAVWALMEEMRKEKPQLI--TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (638)
.+..+.++.-+.++....+..+ ....|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456777777777775443222 23456667777788888888888888887764 44677888888888888888888
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 006630 229 AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 308 (638)
...|+...+..|.+..+|..+...+...|++++|.+.|++..+.. |+..........+...++.++|.+.++.....
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 888888877767778888888888888888888888888888763 43322222222334556788888888665433
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERS---GC---EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG 378 (638)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (638)
..|+... ..+.. ...|+...+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++..+.+
T Consensus 195 ~~~~~~~-~~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWG-WNIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccH-HHHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2333222 22222 234444333 234333321 00 1123467777778888888888888888877654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-06 Score=91.39 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|..+..+-.+.|...+|++-|-+. .|...|..+++.+.+.|.+++-.+++..+.++.-+|.+. +.++
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELI 1173 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHH
Confidence 458999999999999999998877443 455678899999999999999999998888776666655 4688
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHH
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKA 612 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~ 612 (638)
-+|++.++..|-.+++ .-||......+.+-|...|.++.|+-++..+-... .+...+...|+++-|...
T Consensus 1174 ~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a----~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFA----KLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHH----HHHHHHHHHHHHHHHHHH
Confidence 8999999988765553 25888889999999999999999988876554332 233567778888887765
Q ss_pred Hhh
Q 006630 613 KKQ 615 (638)
Q Consensus 613 ~~~ 615 (638)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-07 Score=92.76 Aligned_cols=220 Identities=13% Similarity=0.097 Sum_probs=160.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006630 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435 (638)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 435 (638)
..+.+.|+++.|+..|-+... ..-.+.+.....++.+|+.+++.+..... -..-|..+.+.|...|+++
T Consensus 714 ~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe 782 (1636)
T KOG3616|consen 714 DHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFE 782 (1636)
T ss_pred HHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHH
Confidence 345566777777776654321 22345566677889999999998877532 2334667778999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
.|.++|-+.- .++--|..|.+.|++++|.++-.+.. |. ......|.+-..-+-..|++.+|.++|-.
T Consensus 783 ~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~--e~t~~~yiakaedldehgkf~eaeqlyit 849 (1636)
T KOG3616|consen 783 IAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GP--EATISLYIAKAEDLDEHGKFAEAEQLYIT 849 (1636)
T ss_pred HHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--Cc--hhHHHHHHHhHHhHHhhcchhhhhheeEE
Confidence 9999997653 56677889999999999998876653 31 23445565556667788999999988755
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 516 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
+. .|+. -|..|-++|..++.+++.++-- | ..-..|...+..-+...|+++.|+.-+-++-+.. .
T Consensus 850 i~----~p~~-----aiqmydk~~~~ddmirlv~k~h--~-d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~k----a 913 (1636)
T KOG3616|consen 850 IG----EPDK-----AIQMYDKHGLDDDMIRLVEKHH--G-DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFK----A 913 (1636)
T ss_pred cc----CchH-----HHHHHHhhCcchHHHHHHHHhC--h-hhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHH----H
Confidence 42 4553 3678999999999988876532 1 2225677888888888999999998877665443 3
Q ss_pred ccchhhhhhhhhhHHHHHhh
Q 006630 596 TFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 596 ~~~~y~~~g~~~~A~~~~~~ 615 (638)
++|||...|.|++|.++-+.
T Consensus 914 avnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 914 AVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHhhhhhhHHHHHHHHhc
Confidence 67999999999999998765
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-07 Score=90.79 Aligned_cols=202 Identities=10% Similarity=-0.043 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH--
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEV-FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC-- 214 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~-- 214 (638)
...|..+...+...|+.+.+...+.......+...+... .......+...|++++|.+.+++..+.. +.|...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 345555666666667777776666666655544344322 2222334456788888888888776652 334434432
Q ss_pred -HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 215 -LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 215 -li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
+.......+..+.+.+.++......+........+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11112223455555555544323334444555566677777888888888888877764 3445666777777777888
Q ss_pred HhHHHHHHHHHHHcCC-CCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 294 MTDAFELLKEMRRKGC-DPNA--NSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 294 ~~~a~~~~~~~~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+++|...+++...... .|+. ..|..+...+...|++++|..+|++...
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 8888887777765422 1222 2344566777777788888777777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-07 Score=84.42 Aligned_cols=419 Identities=13% Similarity=0.080 Sum_probs=210.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
|..++..+.+..++.+|++++..-.+.. +.+......|..+|-...++..|...++++....|.-...--.-...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4555555666666667766666554442 224555566666666666666666666666554333222222334555566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY--AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANR 334 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 334 (638)
+.+..|+++...|... |+...-..-+.+. ...+++..+..++++....| +..+.+...-...+.|+++.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 6666666666666531 2222211122221 23355555666555544221 33333334444456667777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 335 AFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT----YLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t----~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
-|+...+.+--.....||..+ +..+.|+++.|+++..+++++|++.-+.. -+-.+++- ..|+. ..++...
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa- 239 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA- 239 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHHH-
Confidence 776666543333345555444 34455666777777766666665411100 00000000 00000 0000000
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 411 KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 411 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
-...+|.-...+.+.|+++.|.+.+-.|+-+. -..|++|...+.-. -..+++.+..+-+.-+++.. +-.
T Consensus 240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n---PfP 309 (459)
T KOG4340|consen 240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN---PFP 309 (459)
T ss_pred ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC---CCC
Confidence 01223333445678899999999988886432 23455666554322 22455666666555566554 234
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCCCCHHHHHH-H
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCE-LNVYAWTIWIHSLFS-NGHVKEACSYCLDMMDADVMPQPDTFAK-L 566 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~-l 566 (638)
..||..++-.||+..-++.|-+++-+-...... .+...|+ +++++.- .-..++|.+-++.+...- ..-+.. .
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l----~~kLRklA 384 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML----TEKLRKLA 384 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 568999999999999999888887553322111 1223333 3444443 345677766555443210 000010 0
Q ss_pred HHHH-HhhcC----HHHHHHHHHHHHHHHHhcccc-cchhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 567 MRGL-KKLYN----RQIAAEITEKVRKMAAERQIT-FKMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 567 l~~~-~~~g~----~~~A~~~~~~~~~~~p~~~~~-~~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
+..- .+..+ ...|.+-++..+++.-.--.+ ..+|.+..++..++++|++..+-.+.+
T Consensus 385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~eh 447 (459)
T KOG4340|consen 385 IQVQEARHNRDDEAIRKAVNEYDETLEKYLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDH 447 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHhhhccc
Confidence 1111 11111 122223333333332111111 258889999999999999866655433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-07 Score=83.03 Aligned_cols=197 Identities=14% Similarity=0.092 Sum_probs=130.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHH
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALC 220 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 220 (638)
...|.-.|...|++..|..-+++..+.+|. +..+|..+...|.+.|..+.|.+.|++..+.. +.+-.+.|.....+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs--~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS--YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 445556677777777777777777777665 55667777777777777777777777776653 344566777777777
Q ss_pred hCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006630 221 KNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
..|++++|...|++.... ++.-..+|..+.-+..+.|+++.|...|++.++.. +-...+...+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 777777777777776542 33345566667777777777777777777776654 223445556666666777777777
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 299 ELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 299 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
..++.....+. ++..+.-..|..--..|+.+.+-++=.++...
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 77766666544 56666666666666667766666655555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-06 Score=88.80 Aligned_cols=198 Identities=12% Similarity=0.021 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhCC-CCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006630 175 EVFVILMRRFASARMVKKAIEVLDEMPKYG-CEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252 (638)
Q Consensus 175 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 252 (638)
..+..+...+...|+.+.+.+.+....+.. ..++. .........+...|++++|..++++..+..|.+...+.. ...
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 344445555555666666555555543321 11222 222222334456778888888887777666666655553 222
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 006630 253 WCK----EGKLVEAKYVLVQMKDAGFEPD-IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME 327 (638)
Q Consensus 253 ~~~----~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 327 (638)
+.. .+..+.+.+.+... ....|+ ......+...+...|++++|.+.+++..+.. +.+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 222 34444444444431 111222 2333445566677777777777777777653 224556667777777777
Q ss_pred CHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 328 KMEEANRAFVEMERSGC-EADV--VTYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 328 ~~~~A~~~~~~m~~~g~-~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
++++|...+++...... .++. ..|..+...+...|++++|+.++++...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777665421 1222 2344566667777777777777777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.1e-09 Score=100.33 Aligned_cols=271 Identities=12% Similarity=0.071 Sum_probs=169.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
-+.-.|++..++.-.+ .....-+.+.....-+.+++...|+++.++. ++... ..|.......+...+....+-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~-~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKS-SSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TT-SSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccC-CChhHHHHHHHHHHHhCccchHH
Confidence 3445577777765544 2221111123344455667777777665443 33222 35565555555555544344455
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 402 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
+..-++........ .+.........++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 54444433322222 22233333334566788899888887643 356677778889999999999999999998
Q ss_pred hCCCCCCCcHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006630 481 GRGLLSAPQYGTLKALLNSLL----RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556 (638)
Q Consensus 481 ~~~~~~~p~~~~~~~ll~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 556 (638)
+.+ .| .+...+..++. ..+++.+|..+|+++.+. +.+++...+.+..++...|++++|.+++.+.+..+
T Consensus 159 ~~~----eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 159 QID----ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp CCS----CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred hcC----Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 764 33 34444555444 234689999999998665 56788889999999999999999999999887543
Q ss_pred CCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHHHHHHhcccccchhhhhhhhhhHH
Q 006630 557 MPQPDTFAKLMRGLKKLYNR-QIAAEITEKVRKMAAERQITFKMYKRRGERDLKE 610 (638)
Q Consensus 557 ~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~ 610 (638)
.-++.|+.+++......|+. +.+.++..++....|+++..-+.-.+...+|++.
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~~~~FD~~~ 286 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEKEAEFDRAV 286 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence 23566788888777788877 7788899999999999888766555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.1e-06 Score=82.05 Aligned_cols=94 Identities=10% Similarity=0.067 Sum_probs=70.5
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNV---YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~ 576 (638)
...+.+.++.+-.+...+....-.. ..+..+-.++...|++.+|++.+.+.++. .|| ..++---..+|.....+
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHH
Confidence 3556677777777777765322112 23445556778889999999999998854 666 66788888888888899
Q ss_pred HHHHHHHHHHHHHHHhcccc
Q 006630 577 QIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.|+.-++++.+.+|+|..+
T Consensus 358 D~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HHHHHHHHHHHhcCcccHHH
Confidence 99999999999999988766
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-06 Score=88.35 Aligned_cols=412 Identities=15% Similarity=0.147 Sum_probs=249.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.-.+.++.+...|+-++|-++ ...++.. ...|+.|.+.|.+-+|......= ..+..|......+..++
T Consensus 591 lk~sy~q~l~dt~qd~ka~el----k~sdgd~------laaiqlyika~~p~~a~~~a~n~--~~l~~de~il~~ia~al 658 (1636)
T KOG3616|consen 591 LKRSYLQALMDTGQDEKAAEL----KESDGDG------LAAIQLYIKAGKPAKAARAALND--EELLADEEILEHIAAAL 658 (1636)
T ss_pred HHHHHHHHHHhcCchhhhhhh----ccccCcc------HHHHHHHHHcCCchHHHHhhcCH--HHhhccHHHHHHHHHHH
Confidence 334556666777877777554 2222221 23677888888888776653211 11234444444444444
Q ss_pred HhC-------------CCHHHHHHHHHHHh------c----cCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006630 220 CKN-------------SSVKEAAKLFDEMR------E----RFKPSLRHFT-SLLYGWCKEGKLVEAKYVLVQMKDAGFE 275 (638)
Q Consensus 220 ~~~-------------g~~~~A~~~~~~~~------~----~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~ 275 (638)
.+. .++++|.+.|++-. + .+|..+++.. .....+.+.|+++.|..-|-+..
T Consensus 659 ik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~----- 733 (1636)
T KOG3616|consen 659 IKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----- 733 (1636)
T ss_pred HhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----
Confidence 433 34444444443210 0 0222232221 22334455666666666554432
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 355 (638)
.....+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|.++|.+.- .++-.|
T Consensus 734 ----~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai 798 (1636)
T KOG3616|consen 734 ----CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAI 798 (1636)
T ss_pred ----hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHH
Confidence 123345666777899999999998887632 33457788899999999999999997643 245567
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006630 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435 (638)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 435 (638)
..|.+.|++++|.++-++.. |.......|..-..-+-+.|++.+|.+++-.+. .|+. .|.+|-+.|..+
T Consensus 799 ~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~d 867 (1636)
T KOG3616|consen 799 DMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDD 867 (1636)
T ss_pred HHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcch
Confidence 88999999999999876654 444456667666777888999999998875544 4543 478899999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
+.+++.++-.-.. -..+...+..-|...|+..+|...|-+.- -|.+.++.|-..+.+++|.++-+.
T Consensus 868 dmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~-----------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 868 DMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG-----------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh-----------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 9888877653211 12466677788888999999988775542 244556677777777777665332
Q ss_pred HHHcCCCCCHH-----HHH------HHHHHHHccCCHHHHHHH-------------HHHHHhCCCCCCHHHHHHHHHHHH
Q 006630 516 IVTKGCELNVY-----AWT------IWIHSLFSNGHVKEACSY-------------CLDMMDADVMPQPDTFAKLMRGLK 571 (638)
Q Consensus 516 ~~~~~~~p~~~-----~~~------~li~~~~~~g~~~~A~~~-------------~~~m~~~~~~p~~~t~~~ll~~~~ 571 (638)
.|-. |.. .|. +-+..+-++|..++|+.+ -+-..+. -.|. ....+..-+.
T Consensus 934 ---egg~-n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~-k~~~--vhlk~a~~le 1006 (1636)
T KOG3616|consen 934 ---EGGA-NAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKD-KMGE--VHLKLAMFLE 1006 (1636)
T ss_pred ---cccc-cHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhc-cCcc--chhHHhhhhh
Confidence 2111 111 111 112334444554444433 2222211 1222 2233344456
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccc----------------------ccchhhhhhhhhhHHHHHhh
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQI----------------------TFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~----------------------~~~~y~~~g~~~~A~~~~~~ 615 (638)
..|+++.|.+.+-++++++.-|.. ++.|+.+..+|..|+++-+.
T Consensus 1007 degk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~ 1072 (1636)
T KOG3616|consen 1007 DEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEA 1072 (1636)
T ss_pred hccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHh
Confidence 779999999988888887643221 12577888888888887655
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-06 Score=79.90 Aligned_cols=287 Identities=15% Similarity=0.097 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+......|...|-...+|..|-..|+++....|....-..| -..++.+.+.+.+|+.+...|... ++...-..-+
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY--~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqL 117 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY--QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQL 117 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH--HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHH
Confidence 44444555555555555555555555554443321111111 223344455555555555544321 1111111111
Q ss_pred HH--HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 217 DA--LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKM 294 (638)
Q Consensus 217 ~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 294 (638)
.+ .-..+++..+..+.++.+.. .+..+.+.......+.|++++|++-|+...+-+--.....|+..+..| +.|++
T Consensus 118 qaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qy 194 (459)
T KOG4340|consen 118 QAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQY 194 (459)
T ss_pred HHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhH
Confidence 11 11234455555555544421 133344444444455555555555555555433222334444333322 34455
Q ss_pred hHHHHHHHHHHHcCCCCCHHh----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 295 TDAFELLKEMRRKGCDPNANS----YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370 (638)
Q Consensus 295 ~~a~~~~~~~~~~g~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (638)
+.|++...+++++|+...... -+-.++.-. .|+ -..+.... =+..+|.-...+.+.|+++.|.+.
T Consensus 195 asALk~iSEIieRG~r~HPElgIGm~tegiDvrs-vgN---t~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~ea 263 (459)
T KOG4340|consen 195 ASALKHISEIIERGIRQHPELGIGMTTEGIDVRS-VGN---TLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEA 263 (459)
T ss_pred HHHHHHHHHHHHhhhhcCCccCccceeccCchhc-ccc---hHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHH
Confidence 555555555555554311100 000000000 000 00000000 012233334456677888888887
Q ss_pred HHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 371 LDSMIQR-GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEM 444 (638)
Q Consensus 371 ~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 444 (638)
+-.|.-+ ....|++|...+.-.- ..+++.++.+-+..+.+.+ +-...||..++-.|||..-++-|-+++.+-
T Consensus 264 LtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 264 LTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 7777533 2344667766543321 2344555555555666554 345567777777888888888888777553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.6e-05 Score=81.70 Aligned_cols=277 Identities=15% Similarity=0.152 Sum_probs=142.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006630 253 WCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A 332 (638)
...++-+++|..+|++.- .+....+.|+. ..++.+.|.+.-+... ...+|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 334444555555555432 23333333333 2244444444433321 234555566666666666665
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 333 NRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412 (638)
Q Consensus 333 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 412 (638)
.+-|-+.. |+..|...+....+.|.+++-.+++....++.-.|...+ .++-+|++.+++.+..+++
T Consensus 1124 ieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1124 IESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh------
Confidence 55554432 455555566666666666666665555554444443332 4555555555554443332
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHH
Q 006630 413 GCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT 492 (638)
Q Consensus 413 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~ 492 (638)
.-|+......+.+-|...|.++.|.-+|..+. .|..|...+...|.++.|.+.-++. .+..|
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRKA--------ns~kt 1251 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARKA--------NSTKT 1251 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhhc--------cchhH
Confidence 13455555555555555566655555554432 4555555666666666665444332 33446
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLK 571 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~ 571 (638)
|..+-.+|...+.+..| +|-...+-....-..-++.-|-..|.++|-+.+++..+ |++-- -..|+-|.-.|.
T Consensus 1252 WK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1252 WKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHHHH
Confidence 66666666655544333 12222222234455667888888899999888887755 44332 234555555555
Q ss_pred hhcCHHHHHHHH
Q 006630 572 KLYNRQIAAEIT 583 (638)
Q Consensus 572 ~~g~~~~A~~~~ 583 (638)
+ -+.++-.+.+
T Consensus 1325 k-ykp~km~EHl 1335 (1666)
T KOG0985|consen 1325 K-YKPEKMMEHL 1335 (1666)
T ss_pred h-cCHHHHHHHH
Confidence 4 3444444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.2e-06 Score=75.96 Aligned_cols=189 Identities=11% Similarity=0.015 Sum_probs=96.5
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 324 CRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECV 403 (638)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 403 (638)
.-.|+...|+.+...+.+.. +.|...+..-..+|...|++..|+.=++...+.... +..++.-+-..+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHH
Confidence 33455555555555555432 234444444455555555555555444444332111 3333333444444555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHH-----------H--HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcC
Q 006630 404 ELMGEMRKIGCVPDVSNYNV-----------V--IRLACKLGELKEAVNVWNEMEAASLSPGT---DSFVVMVHGFLGQG 467 (638)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~-----------l--i~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g 467 (638)
...++..+. .||...+.. | +......+++.++....+...+..-.... ..+..+-.++...|
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 555555443 232211100 0 11223445566666666665554311111 23334455566677
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
++.+|++...+.++.. +.+..++.--..+|.-...++.|+.=|+.+.+.
T Consensus 322 ~~~eAiqqC~evL~~d---~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 322 QFGEAIQQCKEVLDID---PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred CHHHHHHHHHHHHhcC---chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 7777777777777665 344667766677777777777777777777664
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-05 Score=93.12 Aligned_cols=268 Identities=10% Similarity=-0.022 Sum_probs=109.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHHc----CCC-CCHHhHHHHHHH
Q 006630 252 GWCKEGKLVEAKYVLVQMKDAGFEPDI----VVYNNLLSGYAQMGKMTDAFELLKEMRRK----GCD-PNANSYTVLIQA 322 (638)
Q Consensus 252 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~ 322 (638)
.+...|++++|...+++..+.-...+. ...+.+...+...|++++|...+++.... |.. ....++..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 334556666666665555442111111 12333444445556666665555554432 100 011223334445
Q ss_pred HHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERS----GCE--A-DVVTYTTLISGFCKSRKIDRCYEILDSMIQR--GILP--NQLTYLHIML 391 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~t~~~ll~ 391 (638)
+...|++++|...+++.... +.. + ....+..+...+...|++++|...+++.... ...+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 55556666665555554321 110 0 1122333334444556666665555554332 0111 1122222333
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHH
Q 006630 392 AHEKKEELEECVELMGEMRKIG--CVPDVS--NY--NVVIRLACKLGELKEAVNVWNEMEAASLSPGT---DSFVVMVHG 462 (638)
Q Consensus 392 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~ 462 (638)
.....|+.+.|.+.+....... ...... .. ...+..+...|+.+.|...+............ ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 4445556666555555543210 000000 00 00112233355555555555443321100000 012234444
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLL--SAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~--~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+...|++++|..++.+....... ... ...+...+..++.+.|+.++|...+.++.+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555555655555554432100 001 1123333444455556666665555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.3e-05 Score=92.32 Aligned_cols=344 Identities=13% Similarity=-0.004 Sum_probs=216.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC------CCC--HHhHHHHHHH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC------DPN--ANSYTVLIQA 322 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~------~~~--~~~~~~li~~ 322 (638)
..+...|+++.+..++..+.......+..........+...|+++++...+......-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777777766552211111222233445556678999999999887754311 111 1122233445
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSGCEADV----VTYTTLISGFCKSRKIDRCYEILDSMIQR----GIL-PNQLTYLHIMLAH 393 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~ 393 (638)
+...|++++|...+++....-...+. ..++.+...+...|++++|...+++.... |.. +...++..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 66889999999999987753111221 34455666778899999999999888753 111 1123445566678
Q ss_pred HhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCC--CHHHHHHHHHH
Q 006630 394 EKKEELEECVELMGEMRKI----GCV--P-DVSNYNVVIRLACKLGELKEAVNVWNEMEAAS--LSP--GTDSFVVMVHG 462 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~~~~~li~~ 462 (638)
...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999998876542 211 1 22334555666777899999999998875431 112 13345556677
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHH--H-H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYG--T-L-KALLNSLLRAQKVEMAKDVWSCIVTKGCELN---VYAWTIWIHSL 535 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~--~-~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~ 535 (638)
+...|++++|...+.++............ . . ...+..+...|+.+.|.+.+........... ...+..+..++
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 88899999999999888553110011110 1 0 1112334568899999998776543211111 11134567788
Q ss_pred HccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 536 FSNGHVKEACSYCLDMMDA----DVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
...|++++|..++++.... |..++ ..++..+..++...|+.++|...+.+++++.....
T Consensus 702 ~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 702 ILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 8999999999999988652 32222 23566777788899999999999999999875543
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.89 E-value=0.00012 Score=72.90 Aligned_cols=134 Identities=8% Similarity=0.096 Sum_probs=90.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHH
Q 006630 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212 (638)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 212 (638)
..+-|..+|+.||+-+... ..+++++.++++....|. ++..|..-|..-.+.++++....+|.+.+..- .+...|
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~--s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW 89 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPS--SPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLW 89 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCC--CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHH
Confidence 3466899999999988766 899999999999876654 67789889999999999999999999987653 445556
Q ss_pred HHHHHHHHh-CCCHHH----HHHHHHHHhccC---CCCHHHHHHHHHH---------HHhcCCHHHHHHHHHHHHH
Q 006630 213 GCLLDALCK-NSSVKE----AAKLFDEMRERF---KPSLRHFTSLLYG---------WCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 213 ~~li~~~~~-~g~~~~----A~~~~~~~~~~~---~~~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~ 271 (638)
..-++--.+ .|+... ..+.|+-...+. ..+-..|+..+.. |..+.+++...++++++..
T Consensus 90 ~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 90 KLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 655554333 233322 233344433321 2233446655543 3444566777788888775
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-05 Score=83.84 Aligned_cols=259 Identities=12% Similarity=0.116 Sum_probs=159.4
Q ss_pred CHHHHHHHHH--HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC-C--------C
Q 006630 137 SYDVYRALIK--SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY-G--------C 205 (638)
Q Consensus 137 ~~~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~ 205 (638)
|..+-.++++ .|...|+.+.|.+-.+.+. +...|..+.+.|.+.++++-|.-.+..|... | -
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4455555554 4667788888877776654 3346788888888888888777666665432 1 1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285 (638)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 285 (638)
.++ .+-....-.-...|.+++|+.+|.+.+. |..|=..|-..|.+++|+++-+.=-+..+ ..||....
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYA 865 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHH
Confidence 121 1111222223456778888888877654 34455566777888888877654332221 23555555
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006630 286 SGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID 365 (638)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 365 (638)
.-+-..++.+.|++.|++.... --.++..|. .++.....+.+++. |...|.-...-+-..|+.+
T Consensus 866 ~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~Gemd 929 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMD 929 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchH
Confidence 5566667777777777653211 111122111 23333344444433 4455555555556678888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEME 445 (638)
Q Consensus 366 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (638)
.|+.+|..... |-+++...|-.|+.++|-++-++ .-|......|.++|-..|++.+|..+|.+..
T Consensus 930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88888876543 44566667778888888877654 3366667778888888899999988888765
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7e-07 Score=89.23 Aligned_cols=252 Identities=12% Similarity=0.077 Sum_probs=166.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
-+.+.|++.+|.-.|+..++.. +-+...|--|.......++-..|+..+++..+.... |...+..|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 4567777888888888777663 335667777777777777777788877777775433 56666777777777777777
Q ss_pred HHHHHHHHHHCCCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 402 CVELMGEMRKIGCVP--------DVSNYNVVIRLACKLGELKEAVNVWNEM-EAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 402 a~~~~~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
|...++.-+...++- +...-.. ..+.....+....++|-++ ...+..+|...+..|...|--.|.+++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 777777665432110 0000000 0111112223344444444 3444447788888888888888889999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
++.|+.++... |-|...|+.|...+....+.++|+..|.++++. .|+ +.++..|.-.|...|.++||.+.|-.+
T Consensus 450 iDcf~~AL~v~---Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 450 VDCFEAALQVK---PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHHHHHhcC---CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99998888876 467788888888888888888899988888875 555 345556777788888899888888776
Q ss_pred HhCC---------CCCCHHHHHHHHHHHHhhcCHHHHHHH
Q 006630 552 MDAD---------VMPQPDTFAKLMRGLKKLYNRQIAAEI 582 (638)
Q Consensus 552 ~~~~---------~~p~~~t~~~ll~~~~~~g~~~~A~~~ 582 (638)
+... ..++..+|.+|=.++...++.|.+.++
T Consensus 525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 5421 112335677776666666666644443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.9e-06 Score=80.40 Aligned_cols=205 Identities=13% Similarity=0.122 Sum_probs=120.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--HH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE-ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL--KE 436 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~ 436 (638)
..++.++|+.+..++++.... +..+|+.-...+...| .+++++..++.+.+.+ +.+..+|+.-.-.+.+.|+. ++
T Consensus 49 ~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 345566666666666653221 2233333333444444 4566666666666553 34444555444344444542 56
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHc---CCH----HHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRA---QKV----EMA 509 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~---g~~----~~A 509 (638)
+..+++++.+.+ +-|..+|+.....+...|+++++++.++++++.+. -+..+|+.....+.+. |.. ++.
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~---~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV---RNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC---CchhHHHHHHHHHHhccccccccccHHHH
Confidence 677777777766 56777888887777788888888888888887763 5555665555444443 222 456
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006630 510 KDVWSCIVTKGCELNVYAWTIWIHSLFSN----GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK 572 (638)
Q Consensus 510 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 572 (638)
..+..+++...+ -|...|+.+...+... ++..+|.+++.+..+.+ ..+...+..|++.|..
T Consensus 203 l~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 666666666532 3566777777777663 34466777777766532 2244556666666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=5e-07 Score=90.23 Aligned_cols=227 Identities=11% Similarity=0.076 Sum_probs=176.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-.+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 457889999999999999987654 67889889999999999999999999999875 6677888888889999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMV-----------HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK 505 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li-----------~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~ 505 (638)
|.+.++.-+....+ |..+. ..+.....+....++|-++...... .+++.....|.-.|.-.|+
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~-~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPT-KIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCC-CCChhHHhhhHHHHhcchH
Confidence 99999987654311 11111 1111222334455566666554321 3666677777777888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhhcCHHHHHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD-TFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
+++|.+.|+.++...+ -|...||-|...+....+.++|+..|+++++. .|+-+ ....|.-.|...|.+++|.+.+-
T Consensus 446 fdraiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999988632 26788999999999999999999999999854 78754 57778889999999999999999
Q ss_pred HHHHHHHhcc
Q 006630 585 KVRKMAAERQ 594 (638)
Q Consensus 585 ~~~~~~p~~~ 594 (638)
.++.+.+.+.
T Consensus 523 ~AL~mq~ks~ 532 (579)
T KOG1125|consen 523 EALSMQRKSR 532 (579)
T ss_pred HHHHhhhccc
Confidence 9999988743
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-07 Score=89.98 Aligned_cols=147 Identities=14% Similarity=0.125 Sum_probs=69.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCC
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF----LGQGC 468 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~ 468 (638)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.+ .|. +...+..++ ...+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchh
Confidence 34445555555544321 233444445555566666666666666655432 232 222222222 12234
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV-KEACSY 547 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~ 547 (638)
+.+|..+|+++.+.. .++..+++.+..+....|++++|.+++.+....+. -+..+...++.+....|+. +.+.++
T Consensus 183 ~~~A~y~f~El~~~~---~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 183 YQDAFYIFEELSDKF---GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCHHHHHHHHHHCCS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 556666666655442 24555555555556666666666666665554421 1344444555555555555 344445
Q ss_pred HHHHH
Q 006630 548 CLDMM 552 (638)
Q Consensus 548 ~~~m~ 552 (638)
+.++.
T Consensus 259 l~qL~ 263 (290)
T PF04733_consen 259 LSQLK 263 (290)
T ss_dssp HHHCH
T ss_pred HHHHH
Confidence 55544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-06 Score=84.89 Aligned_cols=346 Identities=14% Similarity=0.153 Sum_probs=199.0
Q ss_pred HHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc----------CCCCHHHHHHHHHHH
Q 006630 184 FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----------FKPSLRHFTSLLYGW 253 (638)
Q Consensus 184 ~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~li~~~ 253 (638)
|...|+++.|.+-.+.+. +..+|..+..+|.+..++|-|.-.+..|... ..++ ..-.......
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA 810 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA 810 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence 455677887777666543 3467788888888877777776666555321 1111 1112222333
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (638)
...|.+++|+.+|++-++ |..|=+.|-..|.+++|.++-+.--+- . =..||......+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHH
Confidence 456777777777777654 334445566677777777765432211 1 1234555555555667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 334 RAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG 413 (638)
Q Consensus 334 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 413 (638)
+.|++.. .+--..+..|. .++.....+.+.+ .|...|..-...+...|+++.|+.+|.....
T Consensus 879 eyyEK~~----~hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-- 940 (1416)
T KOG3617|consen 879 EYYEKAG----VHAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD-- 940 (1416)
T ss_pred HHHHhcC----ChHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh--
Confidence 7776543 11111111111 1122222222222 2445556666667788999999999988764
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CC--CCc
Q 006630 414 CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL--LS--APQ 489 (638)
Q Consensus 414 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~~--~p~ 489 (638)
|-++++..|-.|+.++|-++-++-. |....-.|...|...|++.+|..+|.+.....- .. ..+
T Consensus 941 -------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 941 -------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred -------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5677787888999999998877643 445677789999999999999999987753210 00 000
Q ss_pred HHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--------HHHhCCCCC-
Q 006630 490 YGTLKALLNSLL--RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCL--------DMMDADVMP- 558 (638)
Q Consensus 490 ~~~~~~ll~~~~--~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p- 558 (638)
.-..|.+.+. ...+.-.|-++|++.-. ....-+..|.++|.+.+|+++-= +++..++.|
T Consensus 1008 --~~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1008 --MKDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred --HHHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 0001122222 22233344455544311 11122345778888888876521 123333333
Q ss_pred -CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 559 -QPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 559 -~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
|+...+.-.+.+....++++|..++-.+.+.
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~ 1109 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREF 1109 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 5666777777777778888888777666543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.4e-06 Score=79.78 Aligned_cols=215 Identities=7% Similarity=0.031 Sum_probs=151.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR-MVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
++..+-.++...+..++|+.+++++...+|. +..+|+.-...+...| .+++++..++.+.+.. +.+..+|+.....
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~--~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPG--NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 4445555667778899999999999988876 5566766666666666 5789999999888764 4556678766666
Q ss_pred HHhCCCH--HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CC
Q 006630 219 LCKNSSV--KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM---GK 293 (638)
Q Consensus 219 ~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~ 293 (638)
+.+.|.. +++..+++.+.+..+.|..+|+.....+...|+++++++.++++++.+ .-|...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccc
Confidence 6666653 677888888888788899999999999999999999999999999876 44666777766555544 22
Q ss_pred H----hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006630 294 M----TDAFELLKEMRRKGCDPNANSYTVLIQALCRM----EKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360 (638)
Q Consensus 294 ~----~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (638)
. +...+...+++.... -|...|+.+...+... +...+|.+.+.+..+.+ ..+......|+..|+.
T Consensus 195 ~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 195 LEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred ccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2 355666656665533 3667777777777662 33455777777765543 3355566666666664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.3e-06 Score=88.95 Aligned_cols=240 Identities=8% Similarity=0.078 Sum_probs=184.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQR-GILPN---QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
+.+...|-..|....+.++.++|.+++++.+.. ++.-. ...|.++++.-..-|.-+...++|+++-+. -....+
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445678888888889999999999999998764 22211 235666666666667888889999998874 233567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
|..|...|.+.+.+++|.++|+.|.++- ......|...+..+.++++-++|..++.+++..-.. ..........+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-QEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-hhhHHHHHHHHHHH
Confidence 8899999999999999999999998763 456679999999999999999999999999876421 11222333444555
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhcCHHH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP--DTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~ 578 (638)
.+.|+.+.++.+|+..+.. .+.....|+.+++.-.++|+.+.+..+|++.+..++.|-. ..|...+..-..+||-+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 6899999999999999876 3336789999999999999999999999999998877753 446666666666677777
Q ss_pred HHHHHHHHHHH
Q 006630 579 AAEITEKVRKM 589 (638)
Q Consensus 579 A~~~~~~~~~~ 589 (638)
.+..-.++.+.
T Consensus 1690 vE~VKarA~EY 1700 (1710)
T KOG1070|consen 1690 VEYVKARAKEY 1700 (1710)
T ss_pred HHHHHHHHHHH
Confidence 76666666553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.3e-06 Score=81.24 Aligned_cols=59 Identities=14% Similarity=0.147 Sum_probs=30.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDAD-VMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~-~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
+...+.+.|++++|+..+++.++.. -.| ....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3344555566666666665555431 011 1334555555555566666666555554443
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.5e-07 Score=90.53 Aligned_cols=217 Identities=11% Similarity=0.057 Sum_probs=161.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
.-..+...+...|-...|..+++++. .|..+|.+|+..|+..+|..+..+-.++ +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33445566777888888888887765 3556778888889888888888887773 688888888888888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
....+++|.++++.....- -..+.....+.++++++.+.|+.-.+.. .--..+|-....+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sarA---------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARA---------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHHH---------HHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence 8888888888887654331 0111111234688888888888777652 22466788888888888999999
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhh
Q 006630 545 CSYCLDMMDADVMPQPD-TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
.+.|...+.. .||.. .|+++-.+|.+.++..+|...+++++|.+-++.... -+..+.|.|++|.+++.++.+.
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9888887754 67654 499999999999999999999999998886666665 2556789999999998887776
Q ss_pred hhhhh
Q 006630 620 KRRAR 624 (638)
Q Consensus 620 ~~~~~ 624 (638)
.++.+
T Consensus 617 ~~~~~ 621 (777)
T KOG1128|consen 617 RKKYK 621 (777)
T ss_pred hhhcc
Confidence 66544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.69 E-value=0.00052 Score=68.57 Aligned_cols=443 Identities=11% Similarity=0.064 Sum_probs=265.4
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC
Q 006630 163 EMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242 (638)
Q Consensus 163 ~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 242 (638)
+-.+.+|. |..+|..||+-+... .++++...++++... ++-....|..-|..-.+..+++..+.+|.+...+ ..+
T Consensus 11 ~rie~nP~--di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLn 85 (656)
T KOG1914|consen 11 ERIEENPY--DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLN 85 (656)
T ss_pred HHHhcCCc--cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-Hhh
Confidence 33445554 889999999977655 999999999998754 3455688999999999999999999999987654 236
Q ss_pred HHHHHHHHHHHHhc-CCHHH----HHHHHHH-HHHCCCCCCH-HHHHHHHHH---------HHHcCCHhHHHHHHHHHHH
Q 006630 243 LRHFTSLLYGWCKE-GKLVE----AKYVLVQ-MKDAGFEPDI-VVYNNLLSG---------YAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 243 ~~~~~~li~~~~~~-g~~~~----A~~~~~~-m~~~g~~p~~-~~~~~ll~~---------~~~~g~~~~a~~~~~~~~~ 306 (638)
+..|..-+..--+. |+... ..+.|+- +.+.|+.+-. ..|+..+.. +....+++...++++++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 88888877654433 33322 2223332 2344544322 234444432 3344456667777777765
Q ss_pred cCCCCCHHhHH------HHHHHH-------HhcCCHHHHHHHHHHHHH--cCCCCCH---------------HHHHHHHH
Q 006630 307 KGCDPNANSYT------VLIQAL-------CRMEKMEEANRAFVEMER--SGCEADV---------------VTYTTLIS 356 (638)
Q Consensus 307 ~g~~~~~~~~~------~li~~~-------~~~g~~~~A~~~~~~m~~--~g~~~~~---------------~~~~~li~ 356 (638)
.-+.-=...|+ .=|+-. -+...+..|.++++++.. .|+..+. ..|-.+|.
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 42221111221 111111 122345667777777653 2332221 12444443
Q ss_pred HHHhcCCH--------HHHHHHHHHHH-HCCCCCCHHHHH-H----HHHHHHhcCC-------HHHHHHHHHHHHHCCCC
Q 006630 357 GFCKSRKI--------DRCYEILDSMI-QRGILPNQLTYL-H----IMLAHEKKEE-------LEECVELMGEMRKIGCV 415 (638)
Q Consensus 357 ~~~~~g~~--------~~A~~~~~~m~-~~~~~p~~~t~~-~----ll~~~~~~g~-------~~~a~~~~~~~~~~~~~ 415 (638)
-=-.++-- ....-.+++.. --+..|+..-.. . .-+.+...|+ .+++..+++.....-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 21111110 11111222222 223344332111 1 1112333343 45566666665544333
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-cH
Q 006630 416 PDVSNYNVVIRLACKLG---ELKEAVNVWNEMEAA-SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QY 490 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~ 490 (638)
.+..+|..+.+.--..- ..+..-.+++++... ...|+. +|...++.-.+..-++.|..+|.++.+.+. .+ +.
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r--~~hhV 402 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKR--TRHHV 402 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccC--Ccchh
Confidence 44555554443211111 245555666666543 233443 778888888888889999999999999875 34 34
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ--PDTFAKLMR 568 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~ 568 (638)
...++++.- ...++.+-|.++|+.-+++ +.-+...-...++-+...++-..|..+|++.+..++.|| ..+|..++.
T Consensus 403 fVa~A~mEy-~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 403 FVAAALMEY-YCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE 480 (656)
T ss_pred hHHHHHHHH-HhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence 455555554 4568899999999988776 233445557788889999999999999999998866666 467999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccc--------ccchhhhhhhhhhHHHHHhh
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQI--------TFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~--------~~~~y~~~g~~~~A~~~~~~ 615 (638)
--..-||+....++-++-...-|.+.. .++.|.-++.+..-..-++.
T Consensus 481 yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~ 535 (656)
T KOG1914|consen 481 YESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKF 535 (656)
T ss_pred HHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHh
Confidence 999999999999998888777773211 13677777666654444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-05 Score=86.49 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=139.6
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc-CCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006630 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK-GCD---PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTY 351 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~ 351 (638)
-....|-..|......++.+.|.++.++.+.. ++. --...|.++++.-..-|.-+...++|+++.+.. -....|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 34456777777777777777777777777654 111 123456666666666677777778888777642 123556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 006630 352 TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC-VPDVSNYNVVIRLACK 430 (638)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~ 430 (638)
..|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+..+-+.|..++.+..+.-. ........-.+.+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 77777788888888888888888775 223556677777777777777778888777766411 1133444455566677
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 484 (638)
.|+.+.+..+|+...... |.-...|+..|+.-.++|..+.+..+|++....++
T Consensus 1613 ~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l 1665 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKL 1665 (1710)
T ss_pred cCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCC
Confidence 888888888888776654 44556788888888888888888888888887776
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=88.41 Aligned_cols=219 Identities=14% Similarity=0.054 Sum_probs=158.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC 429 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 429 (638)
.-..+...+...|-...|+.+|++.. .+..++.+|...|+..+|..+..+-.+. +||...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456667777888888888887654 3555677788888888888887777663 778888877777776
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
...-+++|.++++....+ .-..+......+++++++.+.|+.-.+.. +-...+|-.+..+..+.++++.|
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n---plq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN---PLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC---ccchhHHHhccHHHHHHhhhHHH
Confidence 666677888887765543 11222222334678888888888877766 35566777777777788888888
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 006630 510 KDVWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 510 ~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (638)
.+.|...+.. .| +...||.+-.+|.+.|+..+|...+.+..+.+ .-+...|.+.+-...+.|.++.|.+++.++.+
T Consensus 539 v~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 539 VKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 8888887775 34 45678888888888888888888888887765 44445577777777788888888888888877
Q ss_pred HHHh
Q 006630 589 MAAE 592 (638)
Q Consensus 589 ~~p~ 592 (638)
+.-+
T Consensus 616 ~~~~ 619 (777)
T KOG1128|consen 616 LRKK 619 (777)
T ss_pred hhhh
Confidence 6544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.0012 Score=70.08 Aligned_cols=454 Identities=13% Similarity=0.117 Sum_probs=213.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR--FASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (638)
..+++..|++....+.+..|..+ +..++++ +.+.|+.++|..+++.....+. .|..|...+-..|.+.|+.++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 44566677777766666665432 2223333 2466777777766666554442 266677777777777777777
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------CHhHH
Q 006630 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG----------KMTDA 297 (638)
Q Consensus 228 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----------~~~~a 297 (638)
|..+++.....+|. ......+..+|.+.+.+.+-.+.--+|-+. ++-+...+=++++.+...- -..-|
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 77777776665443 555666666666666665444333333332 2233344434444433321 12234
Q ss_pred HHHHHHHHHcC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 298 FELLKEMRRKG-CDPNANSYTVLIQALCRMEKMEEANRAFV-EMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 298 ~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (638)
.+.++.+.+.+ ..-+..-...-....-..|.+++|.+++. ...+.-...+...-+--+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55555555443 11111112222233445567777777773 33332222333444455566666777777777777777
Q ss_pred HCCCCCCHHHHHH-----HHH--------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHHHHHH
Q 006630 376 QRGILPNQLTYLH-----IML--------AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLA---CKLGELKEAVN 439 (638)
Q Consensus 376 ~~~~~p~~~t~~~-----ll~--------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~ 439 (638)
..|.. |..+|.- +-. ++...+..+...+...+..... ....|-+-+.++ ..-|+.+++..
T Consensus 254 ~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~ 329 (932)
T KOG2053|consen 254 EKGND-DYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLS 329 (932)
T ss_pred HhCCc-chHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHH
Confidence 66543 2111111 111 1111223333333333333221 111122222222 33466666554
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH---HHHHHHHHHHHcCCH-----HHHHH
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG---TLKALLNSLLRAQKV-----EMAKD 511 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~---~~~~ll~~~~~~g~~-----~~A~~ 511 (638)
.|-+- .|-.| .|..=+..|...=..++-..++...........-+.. .....+..-...|.+ +.-..
T Consensus 330 ~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 330 YYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 44221 11111 1111122222222222223333332222100000000 011111111122211 11122
Q ss_pred HHHHHH---Hc------CCCCC---------HHHHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 512 VWSCIV---TK------GCELN---------VYAWTIWIHSLFSNGHVK---EACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 512 ~~~~~~---~~------~~~p~---------~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
++.+.. ++ ++-|+ .-+.+.|++.+.+.++.. +|+-+++.-+... .-|..+-..++..|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHH
Confidence 221111 11 22233 224567788888888765 5555555544431 23455556778888
Q ss_pred HhhcCHHHHHHHHHHHHHHHH-hcc---cccchhhhhhhhhhHHHHHhhhhhhh
Q 006630 571 KKLYNRQIAAEITEKVRKMAA-ERQ---ITFKMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 571 ~~~g~~~~A~~~~~~~~~~~p-~~~---~~~~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
.-.|-...|.+.++.+--.+- .++ ..+..+...|+|.-+...+...-.-.
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 888999999888875522222 222 22467788899999988887744433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.1e-06 Score=78.83 Aligned_cols=193 Identities=12% Similarity=0.058 Sum_probs=138.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCC-CC-
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGCE-PD- 208 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~- 208 (638)
|........+-.+...+.+.|++++|...|+++....|..+. ..++..+..++...|++++|+..++.+.+.... +.
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 344567778888999999999999999999999988765332 346777888999999999999999999875311 11
Q ss_pred HHHHHHHHHHHHhC--------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 209 EFVFGCLLDALCKN--------SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVV 280 (638)
Q Consensus 209 ~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 280 (638)
..++..+...+.+. |+.++|.+.|+.+....|.+...+..+...... .. ... ..
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~----~~------~~~--------~~ 168 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYL----RN------RLA--------GK 168 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHH----HH------HHH--------HH
Confidence 12455566666654 788999999999987767666555443322110 00 000 01
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGC--DPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
...+...+.+.|++.+|...++...+... +.....+..+...+.+.|++++|..+++.+...
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 12455678888999999999998887632 123467888889999999999999988888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-05 Score=70.51 Aligned_cols=196 Identities=20% Similarity=0.171 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 398 ELEECVELMGEMRK---IG-CVPDVS-NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 398 ~~~~a~~~~~~~~~---~~-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
+.++..+++..+.. .| ..++.. .|..++-+...+|+.+.|...++.+...- +.+...-..-...+-..|++++|
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence 34444555444432 12 334432 34444556667889999999999887763 32222222223345567899999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
+++++.+++.+ +.+..++..=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 106 ~e~y~~lL~dd---pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 106 IEYYESLLEDD---PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHhccC---cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999887 456667766666677788888999888888776 56699999999999999999999999999987
Q ss_pred hCCCCC-CHHHHHHHHHHHHhh---cCHHHHHHHHHHHHHHHHhcccc-cchh
Q 006630 553 DADVMP-QPDTFAKLMRGLKKL---YNRQIAAEITEKVRKMAAERQIT-FKMY 600 (638)
Q Consensus 553 ~~~~~p-~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~-~~~y 600 (638)
-. .| ++..+..+...+... .+++.|+++++++++++|++... +.+|
T Consensus 182 l~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 182 LI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred Hc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 53 45 455666666666544 48899999999999999976655 3444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.5e-05 Score=69.24 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=71.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH----H
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL----R 502 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~----~ 502 (638)
.|++.|++++|++...... +......=+..+.+..+++-|.+.+++|.+. .+..|++-|..++. .
T Consensus 117 i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-----ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-----DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----chHHHHHHHHHHHHHHhcc
Confidence 4555555555555544411 1112222233334444555555555555443 23334444444433 2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc-CHHHHHH
Q 006630 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY-NRQIAAE 581 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~A~~ 581 (638)
.+++..|.-+|+++.++ ..|+..+.+-+..++...|++++|..++++.+... .-++.|+.+++-.....| +.+--.+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 23455555555555443 34555555555555555555555555555555432 223444444444333333 2233344
Q ss_pred HHHHHHHHHHhcccc
Q 006630 582 ITEKVRKMAAERQIT 596 (638)
Q Consensus 582 ~~~~~~~~~p~~~~~ 596 (638)
....+....|+++-.
T Consensus 264 ~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 264 NLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHHhcCCcchHH
Confidence 555555555554444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.7e-06 Score=74.18 Aligned_cols=125 Identities=11% Similarity=0.033 Sum_probs=73.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HccCC--HH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL-FSNGH--VK 542 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~--~~ 542 (638)
.++.++++..++..+... +.+...|..+...|...|++++|...|+++.+.... +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcH
Confidence 445555666666655554 355556666666666666666666666666655322 455555555543 45555 36
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 543 EACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+|.+++++.++. .| +...+..+...+...|++++|+..++++++++|.+..-
T Consensus 128 ~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 128 QTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 666666666654 33 34445556666666666666666666666666654433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.60 E-value=7e-08 Score=59.16 Aligned_cols=32 Identities=53% Similarity=1.001 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006630 204 GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 235 (638)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56777777777777777777777777777766
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.9e-08 Score=59.18 Aligned_cols=32 Identities=56% Similarity=1.206 Sum_probs=15.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
|+.||..+||+||.+||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.8e-06 Score=74.37 Aligned_cols=100 Identities=13% Similarity=-0.017 Sum_probs=53.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
+..++...|++++|...|+.++... +.+...|..+..++.+.|++++|+..|++.+... ..+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444555555555555555555442 1244555555555555555555555555555431 2234445555555555556
Q ss_pred HHHHHHHHHHHHHHHHhccccc
Q 006630 576 RQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+++|+..++++++..|+++..+
T Consensus 108 ~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 108 PGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHHHHHHHHHHHHhCCCChHHH
Confidence 6666666666655555555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.1e-05 Score=71.63 Aligned_cols=124 Identities=10% Similarity=0.132 Sum_probs=94.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH-HHcCC--HH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL-LRAQK--VE 507 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~-~~~g~--~~ 507 (638)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~---P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR---GENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCCCcH
Confidence 566677777777777766 6778888888888888888888888888888876 35666677777654 56666 48
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 560 (638)
+|.++++++++.+.. +...+..+...+...|++++|+..|+++++.. .|+.
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 888888888887433 66778888888888888888888888887643 4444
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-05 Score=71.75 Aligned_cols=160 Identities=15% Similarity=0.074 Sum_probs=125.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 178 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
..+-..+...|+-+....+....... .+.|....+.++....+.|++..|...|.+.....|+|..+|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44556666677777777776664432 24566677778888888999999999999988888889999999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (638)
++++|..-|.+..+.- .-+...++.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++++|..+-.
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 9999999998888764 345667788888888889999999988888776433 66777778888888899999888876
Q ss_pred HHH
Q 006630 338 EME 340 (638)
Q Consensus 338 ~m~ 340 (638)
+-.
T Consensus 227 ~e~ 229 (257)
T COG5010 227 QEL 229 (257)
T ss_pred ccc
Confidence 644
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.6e-05 Score=83.19 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
+...+..|.....+.|++++|..+++...+.. +.+......+...+.+.+++++|...+++....... +......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~---Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF---PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC---CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 34455555555555555555555555555543 223334444455555555555555555555544211 33344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
..++.+.|++++|..+|+++... .|+ ..++..+..++.+.|+.+.|...++++++..
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55555555555555555555542 222 4445555555555555555555555555544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.2e-05 Score=70.30 Aligned_cols=159 Identities=11% Similarity=0.044 Sum_probs=107.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~ 501 (638)
..+-..+...|+-+....+........ +.|.......+....+.|++.+|+..|.+..... ++|..+|+.+.-+|.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~---p~d~~~~~~lgaald 145 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA---PTDWEAWNLLGAALD 145 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC---CCChhhhhHHHHHHH
Confidence 444555666677777766666654432 3444555557777777777777777777777665 577777777777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 581 (638)
+.|+.++|+.-|.+..+.. .-+....+.+.-.|.-.|+.+.|..++......+ .-|..+-..+..+....|+++.|+.
T Consensus 146 q~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 146 QLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred HccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHh
Confidence 7777777777777777762 2245566777777777778888877777766543 2355556666667777777777777
Q ss_pred HHHHH
Q 006630 582 ITEKV 586 (638)
Q Consensus 582 ~~~~~ 586 (638)
+...-
T Consensus 224 i~~~e 228 (257)
T COG5010 224 IAVQE 228 (257)
T ss_pred hcccc
Confidence 76543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=84.94 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=130.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHH
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 211 (638)
..|.+++.++-.|..+..+.|.+++|..+++......|. +...+..+...+.+.+++++|+..+++..... +-+...
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd--~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~ 156 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD--SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE 156 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence 467888999999999999999999999999999999886 67788889999999999999999999998774 445677
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLL 285 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 285 (638)
.+.+..++.+.|++++|..+|+++....+.+..++..+...+-..|+.++|...|++..+.- .|....|+..+
T Consensus 157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 157 ILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 78888889999999999999999988767779999999999999999999999999998753 34445555443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.5e-05 Score=81.09 Aligned_cols=170 Identities=11% Similarity=0.084 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
+.+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+...++.+++..+ .+..
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~------------ 91 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLID------------ 91 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhh------------
Confidence 346677888899888899999999998866655 4444 3444444466667776665554 3322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 006630 250 LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329 (638)
Q Consensus 250 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 329 (638)
......++.-...+...|.+. .-+...+-.+..+|-+.|+.+++..+++++++.. +-|..+.|.+...|... ++
T Consensus 92 --~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 92 --SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred --hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 222223332223333344433 2344577778888888899999999999888876 34778888888888888 88
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (638)
++|.+++.+.... |...+++.++.+++..+...
T Consensus 166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 8888888887643 45555666667766666654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.6e-06 Score=70.80 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=85.0
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.+++++... +.+......+...+...|++++|.+.|+.+...+ +.+...|..+..++...|++++|...+++.++.
T Consensus 5 ~~~~~l~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGLD---SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcCC---hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555543 2334455666677778888888888888887753 336677778888888888888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+ ..+...+..+...+...|+++.|...++++++.+|++...
T Consensus 81 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 D-PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 3 3346667777778888888888888888888888877664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=68.15 Aligned_cols=121 Identities=9% Similarity=-0.066 Sum_probs=86.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
.+|++..+.+ |+ .+..+...+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+.+..
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ---PWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 4455555432 33 35556777788888888888888888776 46677788888888888888888888888887
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 006630 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRG 569 (638)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~ 569 (638)
.. +.+...|..+..++...|++++|+..|++.++. .|+. ..|.....+
T Consensus 87 l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~ 135 (144)
T PRK15359 87 LD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNA 135 (144)
T ss_pred cC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHH
Confidence 63 336777888888888888888888888888764 4543 334333333
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00014 Score=79.56 Aligned_cols=130 Identities=14% Similarity=0.092 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC-------
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD------- 208 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~------- 208 (638)
.+..+|..|+..|-..+++++|.++.+......|..+.. |..+...+.+.++..++..+ .+... +..+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~--yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA--LYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh--HHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 466789999999999999999999999888887765443 33333356666666665555 22211 0111
Q ss_pred ------------HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 209 ------------EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 209 ------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
...+..|..+|-+.|+.++|..+++++.+..+.|+.+.|.+...|... ++++|.+++.+.+.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 134444555555556666666666666555555666666666666666 66666666555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00017 Score=71.35 Aligned_cols=139 Identities=16% Similarity=0.109 Sum_probs=87.1
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHcCCH
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLRAQKV 506 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~~g~~ 506 (638)
+...|++++|+..++.+...- +.|...+....+.+...|+..+|.+.++.++... |+ ......+.+++.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~----P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD----PNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC----CCccHHHHHHHHHHHhcCCh
Confidence 445677777777777766553 4444455555666777777777777777776664 33 44455566667777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
.+|+.+++...... +-|...|..|..+|...|+..+|.....+ .+...|+++.|...+..+
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHH
Confidence 77777777666552 33666777777777777776666554332 344456677777666666
Q ss_pred HHHH
Q 006630 587 RKMA 590 (638)
Q Consensus 587 ~~~~ 590 (638)
.+..
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 6554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00025 Score=64.59 Aligned_cols=141 Identities=11% Similarity=0.135 Sum_probs=80.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 006630 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG---- 465 (638)
Q Consensus 390 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---- 465 (638)
...|.+.+++++|.+...... +....-.=+..+.+..+++-|.+.++.|.+-+ +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345666666666666655411 11222222334556666777777777776532 33455555554433
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
.+...+|.-+|++|.++- +|+..+.+....++...|++++|..+++.++.+... ++.+...++-+-...|...+
T Consensus 186 gek~qdAfyifeE~s~k~---~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKT---PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAE 259 (299)
T ss_pred chhhhhHHHHHHHHhccc---CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChH
Confidence 345667777777776654 466677777777777777777777777777665322 45555555544444554433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.0004 Score=62.75 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=126.8
Q ss_pred CCHHHHHHHHHhchh---CC-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 188 RMVKKAIEVLDEMPK---YG-CEPDEF-VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262 (638)
Q Consensus 188 ~~~~~A~~~~~~m~~---~g-~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (638)
.+.++.++++..+.. .| ..++.. .|..++-+...+|+.+.|...++.+..++|.+...--.-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345555555555542 23 445553 4455566667788888899999888888766655544444455667888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 263 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
.++++.+++.+ +.|.+++.--+...-..|+--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++.-.
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 88888888876 567777776666666777777888777777765 5668888888888888888888888888888765
Q ss_pred CCCCC-HHHHHHHHHHHHhcC---CHHHHHHHHHHHHHC
Q 006630 343 GCEAD-VVTYTTLISGFCKSR---KIDRCYEILDSMIQR 377 (638)
Q Consensus 343 g~~~~-~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~ 377 (638)
.|. ...+..+...+.-.| +..-|.++|.+..+.
T Consensus 184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 343 333444444433332 456677777777664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00044 Score=68.52 Aligned_cols=120 Identities=19% Similarity=0.065 Sum_probs=61.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCH
Q 006630 251 YGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN-ANSYTVLIQALCRMEKM 329 (638)
Q Consensus 251 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~ 329 (638)
-.+...|++++|+..++.++..- +-|+..+......+.+.++.++|.+.++.+... .|+ ....-.+.++|.+.|++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCCh
Confidence 33444555555555555555441 223333344445555555555555555555554 223 33444455555555555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
.+|..+++...... +-|+..|..|..+|...|+..++..-..++
T Consensus 391 ~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 391 QEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 55555555554432 334555555555555555555555544443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.9e-05 Score=65.54 Aligned_cols=95 Identities=11% Similarity=-0.018 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
...+...+...|++++|.+.|+.+...+ +.+...+..+...+.+.|++++|...|+......+.+...+..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 3344444445555555555555544432 234444555555555555555555555554444444455555555555555
Q ss_pred CCHHHHHHHHHHHHHC
Q 006630 257 GKLVEAKYVLVQMKDA 272 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~ 272 (638)
|++++|...|+...+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 5555555555555443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.2e-05 Score=65.05 Aligned_cols=129 Identities=12% Similarity=-0.029 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV--YAWTIWI 532 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li 532 (638)
.|..++..+ ..++...+...++.+.......+........+...+...|++++|...|+.+......|+. ...-.+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3667777777777777765211111223334456677778888888888877776422221 2344466
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
..+...|++++|+..++..... ...+..+....+.+...|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777788888888877653322 233445666777777888888888877765
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.015 Score=62.07 Aligned_cols=446 Identities=14% Similarity=0.093 Sum_probs=229.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006630 148 LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227 (638)
Q Consensus 148 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (638)
+.|.|+.++|..+++......+. |..|+..+-..|.+.++.++|..++++.... .|+..-...+..+|.+.+.+.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCC--chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888777665544 7778888888888888888888888887765 5667777777888888777765
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHhH
Q 006630 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGK----------LVEAKYVLVQMKDAG-FEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 228 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
-.+.--++-+.+|.+...+=++++.+.+.-. ..-|.+.++.+.+.+ ..-+..-...-.......|.+++
T Consensus 129 qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~e 208 (932)
T KOG2053|consen 129 QQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQE 208 (932)
T ss_pred HHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHH
Confidence 4444333433444455555555555544321 223555666666543 11122222222334456678888
Q ss_pred HHHHHH-HHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------
Q 006630 297 AFELLK-EMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFC---------------- 359 (638)
Q Consensus 297 a~~~~~-~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~---------------- 359 (638)
|.+++. ..-+.-..-+...-+--++.+...+++.+..++-.++...| +|. |.+.+..++
T Consensus 209 al~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 209 ALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhh
Confidence 888873 33333233344555667778888888888888888888775 232 333222211
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 360 KSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH---EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 360 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
..+..+...+..++......+ ..|.+-+.+. -.-|+.++....|-+ +.|-.| .|..=+..|..+=..++
T Consensus 285 ~~~~l~~~~ek~~~~i~~~~R---gp~LA~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q 356 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSKSR---GPYLARLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQ 356 (932)
T ss_pred hhhhHHHHHHHHHHhhccccc---CcHHHHHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHH
Confidence 122233333333333322111 1222222222 234666665544322 222121 11111222222223333
Q ss_pred HHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCC-----HHHHHHHHHHHH---hCCCC----CCCcHH------
Q 006630 437 AVNVWNEMEAASLSPGTD-------SFVVMVHGFLGQGC-----LIEACEYFKEMV---GRGLL----SAPQYG------ 491 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~g~-----~~~A~~~~~~m~---~~~~~----~~p~~~------ 491 (638)
-..+++...... ++.. -+.+.+..-...|. .+.-..++.+.. +.|.. .-|+..
T Consensus 357 ~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~ 434 (932)
T KOG2053|consen 357 LKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDEL 434 (932)
T ss_pred HHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHH
Confidence 333333332211 1111 01111111111221 122222222211 12210 012221
Q ss_pred ---HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006630 492 ---TLKALLNSLLRAQKVE---MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565 (638)
Q Consensus 492 ---~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 565 (638)
+.+.++..|.+.++.. +|+-+++...... +-|..+--.+|..|+-.|-+..|.++|..+--..+.-|..-|..
T Consensus 435 llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~ 513 (932)
T KOG2053|consen 435 LLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI 513 (932)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH
Confidence 3345667777777754 4555555555441 12333445677888888999999988887744445555444432
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhc----ccccchhhhhhhhhhHHHHH
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAER----QITFKMYKRRGERDLKEKAK 613 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~~y~~~g~~~~A~~~~ 613 (638)
...+...|.+..+...+...+++.-++ +..+.+-.+.|.+.+..+..
T Consensus 514 -~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr~g~ySkI~em~ 564 (932)
T KOG2053|consen 514 -FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYRRGAYSKIPEML 564 (932)
T ss_pred -HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCchhhhHHHH
Confidence 234445677888877777777665432 23334445556666555543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00021 Score=61.81 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--HHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPG---TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ--YGTLKA 495 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~--~~~~~~ 495 (638)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+....... .|. ......
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~--d~~l~~~a~l~ 90 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP--DPELKPLARLR 90 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CHHHHHHHHHH
Confidence 44444444 4677788888888877754 222 13334455677788888888888888887652 232 224445
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
+...+...|++++|...++..... ......+....++|.+.|++++|...|++.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667777888888888888664332 234556677788888888888888888764
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00016 Score=69.66 Aligned_cols=89 Identities=9% Similarity=-0.038 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396 (638)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 396 (638)
......+.+..++.+|+..+...++.+ +.+..-|..-...+...|++++|.--.+.-.+.... ........-.++...
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLAL 130 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhh
Confidence 344566777788888888888887764 224455555666677778888777655544432111 122444444555555
Q ss_pred CCHHHHHHHHH
Q 006630 397 EELEECVELMG 407 (638)
Q Consensus 397 g~~~~a~~~~~ 407 (638)
++..+|.+.++
T Consensus 131 ~~~i~A~~~~~ 141 (486)
T KOG0550|consen 131 SDLIEAEEKLK 141 (486)
T ss_pred HHHHHHHHHhh
Confidence 55666665555
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00019 Score=71.84 Aligned_cols=127 Identities=20% Similarity=0.229 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..-.+|+..+...++++.|+.+|+++...+|. ....+++.+...++-.+|++++.+.++.. +.|......-...
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe-----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPE-----VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc-----HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34455666677778888888888888876532 34457777777788888888888877553 4566677777777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
|.+.++.+.|+.+.+++.+..|.+..+|..|..+|.+.|++++|+-.++.+..
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 88888888888888888877777778888888888888888888888877653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0012 Score=63.86 Aligned_cols=277 Identities=13% Similarity=0.082 Sum_probs=168.6
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD-VVTYTTLISGFCK 360 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~ 360 (638)
......+.+..++..|+..+...++..+. +..-|..-...+...|++++|.--.+.-.+. ++. .....-.-.++..
T Consensus 53 k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 53 KEEGNAFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLA 129 (486)
T ss_pred HhhcchHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhh
Confidence 34557788888999999999999987544 4566666666777778888887666555443 222 2233334444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHH-HHHHHHcCCHHHHH
Q 006630 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC-VPDVSNYNVV-IRLACKLGELKEAV 438 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l-i~~~~~~g~~~~A~ 438 (638)
.++..+|.+.++ +...+ ....++..++.+..... +|....+..+ ..++.-.|+.++|.
T Consensus 130 ~~~~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 555555555554 11111 11122222333332221 2333444333 23566678888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH-------------HHHHHHc
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHG--FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL-------------LNSLLRA 503 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l-------------l~~~~~~ 503 (638)
.+--.+.+.+ ..+ .+...+.+ +--.++.+.|...|.+.+..+ |+......+ .+-..+.
T Consensus 190 ~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld----pdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 190 SEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD----PDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred HHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC----hhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 8888777654 333 33333433 445788899999999888876 543322221 1224577
Q ss_pred CCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhhcCHH
Q 006630 504 QKVEMAKDVWSCIVTK---GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDT---FAKLMRGLKKLYNRQ 577 (638)
Q Consensus 504 g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t---~~~ll~~~~~~g~~~ 577 (638)
|++..|.+.|.+.+.. ...|+...|.....+..+.|+.++|+.-.+..+. .|+.. |..-..++...++++
T Consensus 263 G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred cchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888765 2344555666666777888888888888877663 33332 222333455668888
Q ss_pred HHHHHHHHHHHHHHh
Q 006630 578 IAAEITEKVRKMAAE 592 (638)
Q Consensus 578 ~A~~~~~~~~~~~p~ 592 (638)
+|.+.++++.+...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888888887654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=60.92 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCE--LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTFAK 565 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ 565 (638)
++..+...+...|++++|.+.|..+...... .....+..+..++.+.|++++|...|+.+... .|+ ...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~ 81 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCcccHHHHH
Confidence 3445555666677777777777777654211 11334555677777777777777777777653 222 345666
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+..++.+.|+.+.|...++++++..|+++..
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 6667777777777777777777777776554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.3e-05 Score=49.85 Aligned_cols=33 Identities=36% Similarity=0.741 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 277 (638)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777766665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.1e-05 Score=64.83 Aligned_cols=84 Identities=12% Similarity=-0.034 Sum_probs=41.5
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhh
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGE 605 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~ 605 (638)
+..-+...|++++|.++|+-+... .| +..-|..|...|...|++++|+..+.++..++|++|..+ ..|...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC
Confidence 334444555555555555544432 23 233344455555555555555555555555555555543 34555555
Q ss_pred hhhHHHHHhhh
Q 006630 606 RDLKEKAKKQV 616 (638)
Q Consensus 606 ~~~A~~~~~~~ 616 (638)
.++|++.|+..
T Consensus 119 ~~~A~~aF~~A 129 (157)
T PRK15363 119 VCYAIKALKAV 129 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00032 Score=70.25 Aligned_cols=119 Identities=17% Similarity=0.173 Sum_probs=59.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 006630 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259 (638)
Q Consensus 180 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (638)
++..+...++++.|+++|+++.+. .|++ ...|+..+...++-.+|.+++++.....|.+...+......+.+.+++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 444444455555555555555543 2332 223444444455555555555555444444555555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDI-VVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
+.|+.+.+++.+. .|+. .+|..|..+|...|+++.|+-.++.+
T Consensus 251 ~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 251 ELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 5555555555544 2322 35555555555555555555554443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.9e-05 Score=70.51 Aligned_cols=92 Identities=14% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~ 578 (638)
+.+.+++++|+..|.++++... -|.+.|..=..+|.+.|.++.|++-++..+.. .|. ..+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHH
Confidence 3455666666666666666522 24555555556666666666666666665533 343 3456666666666666666
Q ss_pred HHHHHHHHHHHHHhcc
Q 006630 579 AAEITEKVRKMAAERQ 594 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~ 594 (638)
|++.|+++++++|+++
T Consensus 168 A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHHhhhccCCCcH
Confidence 6666666666666665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.1e-05 Score=48.86 Aligned_cols=33 Identities=42% Similarity=0.957 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPN 382 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 382 (638)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566777777777777777777777777666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.042 Score=57.02 Aligned_cols=362 Identities=15% Similarity=0.127 Sum_probs=182.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC-CCCCCH--------HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC
Q 006630 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKY-GCEPDE--------FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242 (638)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 242 (638)
|.+..|..+.......-.++-|...|-+.... |++.-. ..-.+=+.+ --|++++|++++-++..+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh----
Confidence 56777887777766666777777777655432 221100 001111122 247788888887766544
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDA-GFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
...|..+.+.|++-...++++.--.. .-..-...|+.+...++....+++|.+.+..-.. . ...+.
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~---e~~~e 830 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T---ENQIE 830 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h---HhHHH
Confidence 23456666777776666655431100 0011134677777777777777777777654321 1 23455
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
++.+..++++-+.+-..+. -|....-.|...+...|.-++|.+.|-+. +. | ...+..|...+++.+
T Consensus 831 cly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHHHHH
Confidence 5555555555554444443 34555566677777778777777655332 11 1 124556777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCVPDVSNY--------------NVVIRLACKLGELKEAVNVWNEMEAA----SLSPGTDSFVVMVHGF 463 (638)
Q Consensus 402 a~~~~~~~~~~~~~~~~~~~--------------~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~li~~~ 463 (638)
|.++-+... -|...+. ---|..+.+.|+.-+|.+++.+|.++ +.++-..--..++.++
T Consensus 897 avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al 972 (1189)
T KOG2041|consen 897 AVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL 972 (1189)
T ss_pred HHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH
Confidence 777655432 1111111 11245566677766677777666532 3222211111112221
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
. ..+..++++-.+.....|. ....| . +...|-..++-++.+..-. .....+|-.|..-....|..+.
T Consensus 973 L-vE~h~~~ik~~~~~~~~g~---~~dat--~----lles~~l~~~~ri~~n~Wr---gAEAyHFmilAQrql~eg~v~~ 1039 (1189)
T KOG2041|consen 973 L-VENHRQTIKELRKIDKHGF---LEDAT--D----LLESGLLAEQSRILENTWR---GAEAYHFMILAQRQLFEGRVKD 1039 (1189)
T ss_pred H-HHHHHHHHHHhhhhhhcCc---chhhh--h----hhhhhhhhhHHHHHHhhhh---hHHHHHHHHHHHHHHHhchHHH
Confidence 1 1122333333333333332 11111 0 1233334444444443322 1134455555566677899999
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhhcCHHHHHHHH
Q 006630 544 ACSYCLDMMD-ADVMPQPDTFAKLMRGLKKLYNRQIAAEIT 583 (638)
Q Consensus 544 A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~ 583 (638)
|++.--.+.+ ..+-|-..+|..+.-+.+....+..--+.+
T Consensus 1040 Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1040 ALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred HHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence 9876544444 345566666766655444433343333333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00018 Score=72.31 Aligned_cols=97 Identities=14% Similarity=0.095 Sum_probs=60.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~ 576 (638)
..+...|++++|++.|+++++... -+...|..+..+|...|++++|+..++++++. .| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 344556666666666666666532 24555666666666667777777766666654 33 344566666666666777
Q ss_pred HHHHHHHHHHHHHHHhccccc
Q 006630 577 QIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+.|+..++++++++|+++.+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~ 107 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFT 107 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHH
Confidence 777777777777776666553
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00031 Score=68.03 Aligned_cols=137 Identities=10% Similarity=0.104 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR-AQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
.+|..++....+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|..+|+..++. +..+...|...+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~---~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~ 77 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK---RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYL 77 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHH
Confidence 367777777777777888888888887554 2445566555555334 56666688888888876 455778888888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQP----DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.+...|+.+.|..+|++.+.. .|.. ..|...+..-.+.|+.+....+.+++.+.-|++...
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 8888888888888888888754 3333 478888888888899999999988888888775543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00062 Score=71.44 Aligned_cols=142 Identities=10% Similarity=0.048 Sum_probs=89.7
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCCc-HHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQ-----GCLIEACEYFKEMVGRGLLSAPQ-YGTLKALLNSLLRA--------QKVEMAKDVWSC 515 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~p~-~~~~~~ll~~~~~~--------g~~~~A~~~~~~ 515 (638)
+.|...|...+.+.... +...+|+.+|++.++.. |+ ...+..+..++... .++..+.+...+
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld----P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE----PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 44445555555543321 12455666666666654 33 22333332222211 123344444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 516 IVTK-GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 516 ~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.... ....+...|.++.-.....|++++|...++++++. .|+...|..+...+...|+.++|.+.+++++.++|.++
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 4332 12335567777766677789999999999998876 57888888999999999999999999999999999988
Q ss_pred ccc
Q 006630 595 ITF 597 (638)
Q Consensus 595 ~~~ 597 (638)
..+
T Consensus 488 t~~ 490 (517)
T PRK10153 488 TLY 490 (517)
T ss_pred hHH
Confidence 653
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00054 Score=56.83 Aligned_cols=108 Identities=11% Similarity=0.013 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCC--CCCHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQL-ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGC--EPDEFVFGCLL 216 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li 216 (638)
++-.++..+.+.|++++|...|+.+....|.. .....+..+...+.+.|+++.|...|+.+..... +....++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455666677777777777777776655432 1234455566667777777777777776665321 11234556666
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 247 (638)
.++.+.|+.++|...++++....|.+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 6666677777777777776665555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=55.98 Aligned_cols=94 Identities=17% Similarity=0.107 Sum_probs=48.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++...+.. ..+..++..+...+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence 3444445555555555555554431 1122444455555555566666666655555432 1222345555555555566
Q ss_pred HHHHHHHHHHHHHHHH
Q 006630 576 RQIAAEITEKVRKMAA 591 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p 591 (638)
++.|...++++++..|
T Consensus 84 ~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 84 YEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666666665555444
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.4e-05 Score=47.54 Aligned_cols=32 Identities=28% Similarity=0.463 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP 276 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 276 (638)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.9e-05 Score=47.25 Aligned_cols=32 Identities=28% Similarity=0.584 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILP 381 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 381 (638)
+|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=54.13 Aligned_cols=66 Identities=26% Similarity=0.294 Sum_probs=53.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhc-CHHHHHHHHHHHHHHHH
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLY-NRQIAAEITEKVRKMAA 591 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g-~~~~A~~~~~~~~~~~p 591 (638)
+...|..+...+...|++++|+..|++.++. .|+ ...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888888889999999888888875 454 556888888888888 78899999998888877
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00066 Score=53.19 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=8.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
+..+...+...|++++|.+.|+.
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=53.39 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=48.7
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
+...+...|++++|+..|+++++. .| +...+..+..++...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778888999999999888865 45 455678888888888999999999999999888875
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.2e-05 Score=58.45 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhcCHHHHH
Q 006630 503 AQKVEMAKDVWSCIVTKGC-ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~A~ 580 (638)
.|+++.|+.+++++.+... .++...|-.+..+|.+.|++++|+.++++ .+ ..|+. .....+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3556666666666655522 11333444456666666666666666655 21 12222 23333355556666666666
Q ss_pred HHHHH
Q 006630 581 EITEK 585 (638)
Q Consensus 581 ~~~~~ 585 (638)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00074 Score=67.96 Aligned_cols=121 Identities=11% Similarity=0.111 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006630 275 EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK--GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352 (638)
Q Consensus 275 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~ 352 (638)
+.+......+++.+....+++.+..++-+.... ....-..|..++|+.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444455554444555555555444433 111112233455555555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 395 (638)
.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 5555555555555555555555555444444555444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0022 Score=57.21 Aligned_cols=85 Identities=13% Similarity=0.111 Sum_probs=43.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 006630 176 VFVILMRRFASARMVKKAIEVLDEMPKYGCEPD--EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253 (638)
Q Consensus 176 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 253 (638)
.+..+...+...|++++|...|++..+.+..+. ...+..+...+.+.|++++|...+++.....+.+...+..+...|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344444444455555555555555443321111 234555555555566666666666555544444555555555555
Q ss_pred HhcCCHH
Q 006630 254 CKEGKLV 260 (638)
Q Consensus 254 ~~~g~~~ 260 (638)
...|+..
T Consensus 117 ~~~g~~~ 123 (172)
T PRK02603 117 HKRGEKA 123 (172)
T ss_pred HHcCChH
Confidence 5555543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0042 Score=53.48 Aligned_cols=129 Identities=15% Similarity=0.074 Sum_probs=70.8
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHH
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQPDTFAKL 566 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~l 566 (638)
|+...-..|.+++...|++.+|...|.+...--+.-|....-.+..+....+++.+|...++++.+.+ -.-++.+...+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 44444445556666666666666666666544334455555555566666666666666666655431 00122334445
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcccc--c-chhhhhhhhhhHHHHHhhh
Q 006630 567 MRGLKKLYNRQIAAEITEKVRKMAAERQIT--F-KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 567 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~-~~y~~~g~~~~A~~~~~~~ 616 (638)
..++...|.+..|+..++.++...|..... | .++.++|+.++|..-+..+
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 556666666666666666666665543332 2 4666666666665544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=64.29 Aligned_cols=127 Identities=14% Similarity=0.156 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK-NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK 255 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~ 255 (638)
|..+++..-+.+..+.|..+|.+..+.+ ..+..+|.....+-.. .++.+.|.++|+...+.++.+...|...+..+..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4444444444444555555555544322 1122222222222112 2334445555555554455555555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFEPDI----VVYNNLLSGYAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 306 (638)
.|+.+.|..+|++.... .|.. ..|...+..=.+.|+++.+.++.+.+.+
T Consensus 83 ~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 83 LNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp TT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555433 1222 2444444444444555554444444443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0014 Score=58.58 Aligned_cols=118 Identities=12% Similarity=-0.062 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
..+..+...+...|++++|+..|++.+..... .+ ....+..+...+.+.|++++|...++++++.. +-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 34555555666666666666666666654321 11 12345555555666666666666666665542 11344455555
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.++...|+...+..-++... ..+++|.++++++++.+|++.
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhhCchhH
Confidence 55555555554443332221 126778888888888888763
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0088 Score=50.92 Aligned_cols=86 Identities=9% Similarity=-0.126 Sum_probs=36.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 541 (638)
.+...|++++|..+|+.+...+ +-+..-|-.|.-+|...|++++|+..|..+....+ -|+..+-.+..++...|+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D---p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD---AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 3344444444444444444433 12333333444444444444444444444444322 1333344444444444444
Q ss_pred HHHHHHHHHH
Q 006630 542 KEACSYCLDM 551 (638)
Q Consensus 542 ~~A~~~~~~m 551 (638)
+.|.+.|+..
T Consensus 120 ~~A~~aF~~A 129 (157)
T PRK15363 120 CYAIKALKAV 129 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00079 Score=67.72 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=103.7
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS--GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385 (638)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 385 (638)
+.+.+......+++......+++++..++.+.... ....-..|..++|+.|.+.|..++++.++..=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777788888888888899999999988765 2222344567999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 431 (638)
++.+++.+.+.|++..|.++...|...+...+..++...+..|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999998887777777777666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=8e-05 Score=44.66 Aligned_cols=29 Identities=38% Similarity=0.748 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 273 (638)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45566666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0013 Score=58.52 Aligned_cols=81 Identities=10% Similarity=-0.022 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP--DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
...+..+...+...|++++|+..|+........+ ...++..+..+|...|++++|+..++......+....++..+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 3445555556666677777777777665442111 12456666677777777777777777666554555555666655
Q ss_pred HHH
Q 006630 252 GWC 254 (638)
Q Consensus 252 ~~~ 254 (638)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 555
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.023 Score=55.33 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=67.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-CC--cHHHHHHHHHHHH
Q 006630 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ-GCLIEACEYFKEMVGRGLLS-AP--QYGTLKALLNSLL 501 (638)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~p--~~~~~~~ll~~~~ 501 (638)
..|...|++..|-+++..+ ...|... |++++|+++|++..+.-... .+ -..++..+...+.
T Consensus 102 ~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 3455555555554444433 2334444 56666666666554421000 11 1224445555666
Q ss_pred HcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCE-----LNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDA--DVMPQ--PDTFAKLMRGLK 571 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~--~~t~~~ll~~~~ 571 (638)
+.|++++|.++|+++...-.. .+.. .+-..+-++...|++..|...+++.... ++..+ ......|+.+|.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~ 246 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE 246 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 677777777777766554111 1111 1222233455567777777777766532 11112 233445555554
Q ss_pred hh--cCHHHHHHHHHHHHHHHH
Q 006630 572 KL--YNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 572 ~~--g~~~~A~~~~~~~~~~~p 591 (638)
.. ..++.+..-+..+.+++|
T Consensus 247 ~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 247 EGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp TT-CCCHHHHCHHHTTSS---H
T ss_pred hCCHHHHHHHHHHHcccCccHH
Confidence 32 344445555554444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0022 Score=64.47 Aligned_cols=88 Identities=5% Similarity=-0.139 Sum_probs=45.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV 541 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 541 (638)
.+...|++++|+++|+++++.. +.+...+..+..+|.+.|++++|+..+++++.... .+...|..+..+|...|++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~---P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLD---PNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 3344555555555555555544 23344455555555555555555555555555421 1344455555555555555
Q ss_pred HHHHHHHHHHHh
Q 006630 542 KEACSYCLDMMD 553 (638)
Q Consensus 542 ~~A~~~~~~m~~ 553 (638)
++|+..|++.++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 555555555554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.026 Score=53.24 Aligned_cols=177 Identities=10% Similarity=0.089 Sum_probs=88.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHF---TSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
.....+.+.|++++|.+.|+.+....|.+...- -.++.+|.+.+++++|...+++..+....-....|...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344444556777777777777766655554443 34456667777777777777777765322222333333333321
Q ss_pred --c---------------CC---HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006630 291 --M---------------GK---MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVT 350 (638)
Q Consensus 291 --~---------------g~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 350 (638)
. .+ ...|.+.|+.+++. |=...-..+|...+..+... =...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 01 12233344444333 22222233444333333211 0000
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 351 YTTLISGFCKSRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 351 ~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
--.+..-|.+.|.+..|+.-++.+++. +..........++.++...|..++|......+
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 112344566777777777777777664 22223445555566666666666666555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.53 E-value=9.6e-05 Score=44.32 Aligned_cols=29 Identities=45% Similarity=0.932 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRG 378 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 378 (638)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34445555555555555555555544443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00019 Score=55.28 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=34.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 545 (638)
+|++++|+.+|+++...... .++...+..+..++.+.|++++|..+++. .+.+.. +....-.+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 34555555555555554310 01222333345555555555555555544 211111 1122223344555555555555
Q ss_pred HHHHH
Q 006630 546 SYCLD 550 (638)
Q Consensus 546 ~~~~~ 550 (638)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.18 Score=53.26 Aligned_cols=328 Identities=14% Similarity=0.125 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHh
Q 006630 179 ILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERF---KPSLRHFTSLLYGWCK 255 (638)
Q Consensus 179 ~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~li~~~~~ 255 (638)
.+|..+...+.+..|+++-..+...-... ..+|.....-+.+..+..+ ..+++.+.+++ .-...+|..+..-...
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d-~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMD-EEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccc-hHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 46777788889999999887765321111 4666666666666532211 23334443321 1355678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFE----PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 331 (638)
.|+++-|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+... .+...+... ..+...
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~------l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT------LRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH------HHhchh
Confidence 99999888877642221100 01112333444555556666655555555433 111111111 133445
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHhcCCHH---HH
Q 006630 332 ANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILD--SMI----QRGILPNQLTYLHIMLAHEKKEELE---EC 402 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~--~m~----~~~~~p~~~t~~~ll~~~~~~g~~~---~a 402 (638)
|..+|.+..+.. |..+ +-+.|. .++-.+++..|. ... ..+..|+.. ....++++..... ++
T Consensus 591 a~~lY~~~~r~~---~~~~---l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 591 ALSLYRQFMRHQ---DRAT---LYDFYN-QDDNHQALASFHLQASYAAETIEGRIPALK---TAANAFAKSKEKSFEAKA 660 (829)
T ss_pred hhHHHHHHHHhh---chhh---hhhhhh-cccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHHhhhhhhhhHHHH
Confidence 666666655421 2111 112222 222222222221 110 123333332 2334444433311 11
Q ss_pred -------HHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 403 -------VELMGEMRK-IGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE 474 (638)
Q Consensus 403 -------~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 474 (638)
+.+.+.+.. .|......+.+--+.-+...|+..+|.++-.+.. .||-..|-.-+.+++..+++++-.+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLek 736 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEK 736 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHH
Confidence 112222211 1222233334444555677788888888877775 5777788888888888888877666
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
+-+.+.. +.-|.-...+|.+.|+.++|.+++.+.... . -.+.+|.+.|++.+|.++-
T Consensus 737 fAkskks--------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 737 FAKSKKS--------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHhccCC--------CCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHH
Confidence 5544421 223445677888889988888886654321 1 4567788888888887763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0093 Score=62.76 Aligned_cols=143 Identities=12% Similarity=0.031 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHh
Q 006630 415 VPDVSNYNVVIRLACK--LG---ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ--------GCLIEACEYFKEMVG 481 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~m~~ 481 (638)
+.+...|...+++... .+ ....|..+|++..+.+ +-....|..+..++... ++...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4455555555554322 21 2456666666666654 22233444333332221 122334444444333
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 006630 482 RGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD 561 (638)
Q Consensus 482 ~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 561 (638)
.... +.+...+..+.-.....|++++|...+++++.. .|+...|..+...+...|+.++|.+.+++.... .|...
T Consensus 413 l~~~-~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~p 487 (517)
T PRK10153 413 LPEL-NVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGEN 487 (517)
T ss_pred cccC-cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCc
Confidence 2111 234456666655566678899999999888886 467788888888888899999999988888754 45544
Q ss_pred HH
Q 006630 562 TF 563 (638)
Q Consensus 562 t~ 563 (638)
||
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 43
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0071 Score=56.85 Aligned_cols=121 Identities=13% Similarity=0.187 Sum_probs=85.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Q 006630 441 WNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQ---KVEMAKDVWSCIV 517 (638)
Q Consensus 441 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~ 517 (638)
++.-...+ +-|...|-.|...|...|++..|..-|.+..+.. +++...+..+..++.... ...++..+|++++
T Consensus 145 Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al 220 (287)
T COG4235 145 LETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL 220 (287)
T ss_pred HHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 33333444 6677888888888888888888888888888865 366667777777665432 3467888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006630 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568 (638)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 568 (638)
+.+.. |+.+...+...+...|++.+|...|+.|++. -|....+..++.
T Consensus 221 ~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 221 ALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred hcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 76322 5666667777888888888888888888865 444445555554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0029 Score=49.87 Aligned_cols=74 Identities=12% Similarity=0.263 Sum_probs=34.4
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 284 LLSGYAQMGKMTDAFELLKEMRRKGC-DPNANSYTVLIQALCRME--------KMEEANRAFVEMERSGCEADVVTYTTL 354 (638)
Q Consensus 284 ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~l 354 (638)
.|..|...+++.....+|+.+++.|+ .|+..+|+.++...++.. ++-+.+.+|+.|...+++|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 33444444555555555555555555 455555555555444321 122333444444444444444444444
Q ss_pred HHH
Q 006630 355 ISG 357 (638)
Q Consensus 355 i~~ 357 (638)
+..
T Consensus 111 l~~ 113 (120)
T PF08579_consen 111 LGS 113 (120)
T ss_pred HHH
Confidence 443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0025 Score=50.16 Aligned_cols=80 Identities=16% Similarity=0.336 Sum_probs=65.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHHHcCCCCCHHhH
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGF-EPDIVVYNNLLSGYAQMG--------KMTDAFELLKEMRRKGCDPNANSY 316 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 316 (638)
-...|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34455566666899999999999999998 899999999998887753 244567888999999999999999
Q ss_pred HHHHHHHHh
Q 006630 317 TVLIQALCR 325 (638)
Q Consensus 317 ~~li~~~~~ 325 (638)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0029 Score=56.27 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.|..+...+...|++++|+..|++.+.....+.....++..+...+...|++++|...++++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44555555555566666666666655442110011234555555555566666666666555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0072 Score=49.53 Aligned_cols=93 Identities=17% Similarity=0.177 Sum_probs=65.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN----VYAWTIWIH 533 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~ 533 (638)
.+..++-..|+.++|+.+|++....|.........+..+..++...|++++|..+|++.... .|+ ......+.-
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHH
Confidence 35566777888888888888888887632222446777788888888888888888888765 232 222233345
Q ss_pred HHHccCCHHHHHHHHHHHH
Q 006630 534 SLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~ 552 (638)
++...|+.++|++.+-..+
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 6778888888888876654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0067 Score=49.71 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=67.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCC---CHHHHHHHHHHHH
Q 006630 180 LMRRFASARMVKKAIEVLDEMPKYGCEPD--EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKP---SLRHFTSLLYGWC 254 (638)
Q Consensus 180 li~~~~~~~~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~li~~~~ 254 (638)
+..++-..|+.++|+.+|++....|+... ...+-.+...|...|++++|..+|++....+|. +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34455567888888888888777775544 245556677777788888888888877665444 3334444455667
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 255 KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 289 (638)
..|+.++|++.+-.... ++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888877766553 23335555555443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00031 Score=51.72 Aligned_cols=61 Identities=11% Similarity=0.069 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhh-hhhhHHHHHhhhhhh
Q 006630 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRG-ERDLKEKAKKQVDGR 619 (638)
Q Consensus 559 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g-~~~~A~~~~~~~~~~ 619 (638)
++.+|..+...+...|++++|+..++++++++|+++.++ .+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 467889999999999999999999999999999999886 5889999 899999999986654
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.037 Score=53.86 Aligned_cols=91 Identities=16% Similarity=0.304 Sum_probs=39.5
Q ss_pred HHHhc-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHH
Q 006630 392 AHEKK-EELEECVELMGEMRKI----GCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP-----GT-DSFVVM 459 (638)
Q Consensus 392 ~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~~~l 459 (638)
.|... |++++|.+.|++..+. +.+ .-..++..+...+.+.|++++|.++|+++....... +. ..|...
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5666666666555432 100 001233444555666666666666666655432111 11 112222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGR 482 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~ 482 (638)
+-.+...|++..|.+.|++....
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 33444455666666666655543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0026 Score=59.31 Aligned_cols=98 Identities=12% Similarity=0.056 Sum_probs=75.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+..+ +-...+|..|..+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD---p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID---PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC---hHHHHHHHHHHHHHHccCcH
Confidence 3567788888888888888876 6677777778888888888888888888887776 24456888888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELNVYAWTI 530 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~~~~~~~ 530 (638)
++|++.|++.++. .|+-.+|-.
T Consensus 166 ~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 166 EEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred HHHHHHHHhhhcc--CCCcHHHHH
Confidence 8888888888774 666665543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.044 Score=51.73 Aligned_cols=177 Identities=10% Similarity=0.043 Sum_probs=87.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 319 LIQALCRMEKMEEANRAFVEMERSGCEADV-VTY---TTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394 (638)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 394 (638)
....+.+.|++++|.+.|+++... .|+. ..- -.++.+|.+.+++++|...+++..+..+.-...-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 333445567777777777777665 2322 111 2345566677777777777777776533322233333333322
Q ss_pred h--c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 395 K--K---------------EE---LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD 454 (638)
Q Consensus 395 ~--~---------------g~---~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 454 (638)
. . .+ ...|...|+.+++ -|=...-..+|...+..+...- ..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l----a~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL----AK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH----HH
Confidence 1 0 01 1122233333332 2222222334433333332210 00
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
.-..+..-|.+.|.+..|+.-|+.+++.-...+.....+..+..+|...|..++|..+...+
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 11234455666777777777777777654332334555666666777777777766665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0024 Score=60.73 Aligned_cols=100 Identities=14% Similarity=0.090 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTF 563 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~ 563 (638)
.|...+....+.|++++|...|+.+++. -|+ ...+-.+..+|...|++++|+..|+.+++. .|+ ...+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhHHH
Confidence 3444444445567888888888887775 233 245556777888888888888888888753 232 4445
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+...+...|+.+.|..+++++++..|+...
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 56666777888888888888888888887654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0046 Score=52.86 Aligned_cols=85 Identities=13% Similarity=0.063 Sum_probs=48.3
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhH
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLK 609 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A 609 (638)
-+...|++++|..+|+-+.-.+ .-+..-|..|..+|...+++++|...+..+..+++++|... ..|...|+.++|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3445666666666665554332 12334455555555555666666666666666666665553 456666666666
Q ss_pred HHHHhhhhhh
Q 006630 610 EKAKKQVDGR 619 (638)
Q Consensus 610 ~~~~~~~~~~ 619 (638)
++.|+.+.++
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 6666654443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0042 Score=55.42 Aligned_cols=103 Identities=22% Similarity=0.287 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhH
Q 006630 242 SLRHFTSLLYGWCKE-----GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY 316 (638)
Q Consensus 242 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 316 (638)
+-.+|..++..|.+. |..+-....+..|.+-|+.-|..+|+.||+.+=+ |.+- |.. .+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~f 108 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-FF 108 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-HH
Confidence 666677777666643 6677777778888888888888888888876643 2211 111 11
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006630 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363 (638)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (638)
.++..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus 109 Q~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 QAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111111 12345577777777777777777777777777665543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.01 Score=54.14 Aligned_cols=143 Identities=15% Similarity=0.088 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH--
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL-- 216 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li-- 216 (638)
++-+++++.+.-.|.|.-...++.+..+.+|. .++.....+.+.-.+.|+.+.|...|++..+..-..|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e-~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPE-QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCc-ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 45677778888888888888888888877643 466667777777778888888888888665543234444443333
Q ss_pred ---HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 217 ---DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284 (638)
Q Consensus 217 ---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 284 (638)
..|.-.+++..|...|+++....+.|+..-|.-.-+..-.|+...|++.++.|++. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 33445667777777787777776777777776666666677888888888888765 4554444433
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.011 Score=55.71 Aligned_cols=113 Identities=16% Similarity=0.177 Sum_probs=65.4
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHH
Q 006630 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN---SSVKEAAKLFD 233 (638)
Q Consensus 157 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~ 233 (638)
...-++.-...+|. |.+.|..|...|...|+++.|...|....+.. +++...+..+..++... ....++..+|+
T Consensus 141 l~a~Le~~L~~nP~--d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 141 LIARLETHLQQNPG--DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHhCCC--CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 33334444444544 55666666666666666666666666665542 34444444444444332 22345666666
Q ss_pred HHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 234 EMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 234 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
++....+.|+.+...|...+...|++.+|...++.|.+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666655
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0046 Score=59.85 Aligned_cols=288 Identities=13% Similarity=0.060 Sum_probs=149.7
Q ss_pred HHHHHcCCHhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHH--Hc--CCC-CCHHHHHHHHH
Q 006630 286 SGYAQMGKMTDAFELLKEMRRKGCDPNA----NSYTVLIQALCRMEKMEEANRAFVEME--RS--GCE-ADVVTYTTLIS 356 (638)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~--~~--g~~-~~~~~~~~li~ 356 (638)
.-+|+.|+...+..+|+..++.|.. |. ..|..|.++|.-.+++++|+++...=. .. |-+ -...+...|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3478888999999999988887754 43 346666777777788888887653211 00 000 01122223344
Q ss_pred HHHhcCCHHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 357 GFCKSRKIDRCYEILDSM----IQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m----~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 431 (638)
.+--.|.+++|+-.-.+- .+.|-+ .....+..+...|...|+.-.... -.+.|-.++. +-
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~e-v~---------- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAE-VT---------- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHH-HH----------
Confidence 444456666665433221 121211 112233334444433332100000 0000100100 00
Q ss_pred CCHHHHHHHHHHHHH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCCcHHHHHHHHHHHHH
Q 006630 432 GELKEAVNVWNEMEA----ASL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVG----RGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 432 g~~~~A~~~~~~m~~----~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~p~~~~~~~ll~~~~~ 502 (638)
..++.|.++|.+-.+ .|- -.--..|..|...|.-.|++++|+...+.-+. .|-. ......+..+.+++.-
T Consensus 169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr-AaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR-AAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH-HHHHHhhcccchhhhh
Confidence 112334444432211 110 00112555666666667788888776554322 2210 1223456677778888
Q ss_pred cCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----C-CCCCCHHHHHHHHHHHHh
Q 006630 503 AQKVEMAKDVWSCIVTK----GC-ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD----A-DVMPQPDTFAKLMRGLKK 572 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~~~t~~~ll~~~~~ 572 (638)
.|+++.|.+.|+..... |- .....+..+|...|.-...++.|+.++++-+. . ...-....+.+|..++..
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a 327 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA 327 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 88888888888765433 21 11233445677777777788888888766432 1 112234567788888888
Q ss_pred hcCHHHHHHHHHHHHHHH
Q 006630 573 LYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 573 ~g~~~~A~~~~~~~~~~~ 590 (638)
.|+.++|..++++.++..
T Consensus 328 lg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 328 LGEHRKALYFAELHLRSS 345 (639)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 888888888888776654
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00094 Score=48.91 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=33.1
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
+.|++++|+++|+++....|.+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666655666666666666666666666666666666654
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.099 Score=45.35 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=71.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
.|+...-..|.......|+..+|...|++...--+.-|......+.++....+++.+|...++.+.+.... .-+..+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-~r~pd~~L 164 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-FRSPDGHL 164 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-cCCCCchH
Confidence 45555555566666666666666666666655444455555556666666666666666666666554311 01112333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
.+...+...|++..|+..|+..+.. -|+...-......+.++|+.++|..-+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 4455566666666666666666654 334333333344455556555554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.002 Score=47.17 Aligned_cols=63 Identities=21% Similarity=0.339 Sum_probs=45.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
.+.|++++|+++|+++....|. +...+..+..+|.+.|++++|.++++.+... .|+...+..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 4677888888888888887765 6777777888888888888888888888766 4554444433
|
... |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0084 Score=53.53 Aligned_cols=105 Identities=17% Similarity=0.316 Sum_probs=67.4
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006630 275 EPDIVVYNNLLSGYAQM-----GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVV 349 (638)
Q Consensus 275 ~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 349 (638)
..|..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 44666666666666543 4555555666666666777777777777666544 2221 111111111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 398 (638)
.-| -.+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 001 23456789999999999999999999999999977664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.14 Score=50.33 Aligned_cols=108 Identities=18% Similarity=0.150 Sum_probs=70.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 394 (638)
+.+..|.-+...|+...|.++-.+.. -||-.-|-..+.+++..++|++-.++... +-++.-|-.++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34445556666777777777766664 56777777778888888887776654321 113466777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 395 KKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWN 442 (638)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 442 (638)
+.|...+|..+...+. +..-+.+|.++|++.+|.+.--
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777665521 2445667777777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.25 Score=48.57 Aligned_cols=106 Identities=17% Similarity=0.173 Sum_probs=69.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
.+..|.-+...|+...|.++-.+.. .|+-.-|-..+.+|+..+++++-.++... .. +| ..|..++.+|
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kK---sP--IGyepFv~~~ 247 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---KK---SP--IGYEPFVEAC 247 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CC---CC--CChHHHHHHH
Confidence 3444555667777777777766664 57777788888888888888766654332 11 12 3455667777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
.+.|+..+|..+...+ + +..-+..|.+.|++.+|.+..
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 8888888877776552 1 133456677888888877653
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.005 Score=60.05 Aligned_cols=95 Identities=14% Similarity=0.102 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc----hh
Q 006630 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK----MY 600 (638)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~y 600 (638)
..+++.+.-+|.+.+++.+|++..++.++.+ .+|.-.+-.-..+|...|+++.|+..++++++++|+|..+-+ +-
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK 335 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 3456777889999999999999999999765 556677777888999999999999999999999999977642 22
Q ss_pred hhhhhhhhH-HHHHhhhhhhh
Q 006630 601 KRRGERDLK-EKAKKQVDGRK 620 (638)
Q Consensus 601 ~~~g~~~~A-~~~~~~~~~~~ 620 (638)
.+...+++. .++|..|=++.
T Consensus 336 ~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 233333333 44555544333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0019 Score=46.74 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=37.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
...+.+.|++++|...|+++.+..|.+...|..+..++...|++++|...|+++++.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566677777777777766666666666777777777777777777777766654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.32 Score=47.42 Aligned_cols=223 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH---hcCC
Q 006630 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRG-ILPNQL--TYLHIMLAHE---KKEE 398 (638)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--t~~~ll~~~~---~~g~ 398 (638)
+.|+.+.|.++-+..-..- +-=...+.+.+...|..|+++.|+++++.-.... +.++.. .-..|+.+-. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4455555555555544331 1123455666666666666666666666554432 222221 1111221111 1123
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 399 LEECVELMGEMRKIGCVPDVSNYN-VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
...|...-.+..+. .||..--. .-...+.+.|+..++-.+++.+=+.. |....+... .+.+.|+ .++.-++
T Consensus 245 p~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY--~~ar~gd--ta~dRlk 316 (531)
T COG3898 245 PASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLY--VRARSGD--TALDRLK 316 (531)
T ss_pred hHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHH--HHhcCCC--cHHHHHH
Confidence 33444443333332 33322211 22345666677777777777666553 333332221 1223332 2222233
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-CCHHHHHHHHHHHHhCCC
Q 006630 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-GHVKEACSYCLDMMDADV 556 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~ 556 (638)
+.....-..+.+......+..+-...|++..|+.--+..... .|....|..|.+.-... |+-.++...+-+.++..-
T Consensus 317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APr 394 (531)
T COG3898 317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPR 394 (531)
T ss_pred HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCC
Confidence 222211100233444455556666666666666655555443 56666666666654433 666666666666655433
Q ss_pred CC
Q 006630 557 MP 558 (638)
Q Consensus 557 ~p 558 (638)
.|
T Consensus 395 dP 396 (531)
T COG3898 395 DP 396 (531)
T ss_pred CC
Confidence 33
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0014 Score=48.75 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=44.5
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|.+.+++++|++.++.++.. .| +...|......+...|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4567777888888888777765 34 34456667777777788888888888888887776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0041 Score=60.24 Aligned_cols=124 Identities=12% Similarity=-0.007 Sum_probs=89.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCC-CCCHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTK----GCE-LNVYAWTIWIHSLFSNGHVKEACSYCLDMMD----ADV-MPQPD 561 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~-~p~~~ 561 (638)
.|..|.+.|.-.|+++.|+...+.-+.. |-. .....+..+..++.-.|+++.|.+.|+.-.. .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 5666777777889999999887654332 211 1245677888999999999999999887543 221 22344
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc-------c---chhhhhhhhhhHHHHHhh
Q 006630 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT-------F---KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 562 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-------~---~~y~~~g~~~~A~~~~~~ 615 (638)
...+|.++|.-..++++|+.++.+=+++..+-... + +.|...|..++|....++
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 56788999988899999999999887766543222 1 677788888888776655
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.018 Score=54.83 Aligned_cols=98 Identities=16% Similarity=0.168 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT----DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.|...+..+.+.|++++|...|+.+.+.. |+. ..+..+...|...|++++|...|+.+.......+.....+..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34444444445566666666666666542 322 345555666666666666666666666543211222334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+...+...|+.++|..+|+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555566666666666665554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.12 Score=51.26 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 557 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..|-..+.+++.++.-.||+++|.+++++++++.|....
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 345566778888999999999999999999999776554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.074 Score=53.59 Aligned_cols=116 Identities=9% Similarity=0.078 Sum_probs=76.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHH
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCE-LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP--DTFAKLMRGL 570 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~ 570 (638)
..+..++.+.|+.++|++.|+++.+.... -+......|+.++...+.+.++..++.+.-+.. -|.+ ..|+..+-..
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~-lpkSAti~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS-LPKSATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc-CCchHHHHHHHHHHHH
Confidence 44566667888888888888888764211 133456678888888888888888887764322 3443 3366655444
Q ss_pred HhhcC---------------HHHHHHHHHHHHHHHHhccccc----------chhhhhhhhhhHHH
Q 006630 571 KKLYN---------------RQIAAEITEKVRKMAAERQITF----------KMYKRRGERDLKEK 611 (638)
Q Consensus 571 ~~~g~---------------~~~A~~~~~~~~~~~p~~~~~~----------~~y~~~g~~~~A~~ 611 (638)
+..+| ...|.++..++++.+|..|..+ .-+.+.|+ .||..
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEAia 406 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEAIA 406 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHHHH
Confidence 44443 2346688999999999988764 35667776 55543
|
The molecular function of this protein is uncertain. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.17 Score=46.49 Aligned_cols=46 Identities=11% Similarity=-0.082 Sum_probs=20.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHH
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGIL--PNQLTYLHIMLAHEKKEELE 400 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g~~~ 400 (638)
...|.+.|.+..|..-++.+++.=.. ........++.++.+.|..+
T Consensus 148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 34455666666666666665554111 01123344444555555444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.62 Score=46.34 Aligned_cols=422 Identities=9% Similarity=0.094 Sum_probs=209.2
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 006630 157 VWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 157 A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (638)
-+++=+++. .+|. +..+|-.|+.-+...+.+++..+++++|..- ++--..+|..-+++-...++++....+|.+..
T Consensus 28 ~lrLRerIk-dNPt--nI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 28 ELRLRERIK-DNPT--NILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHHhh-cCch--hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 345555554 3454 8889999999999999999999999999743 23345678877887777889999999998876
Q ss_pred ccCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHH-HCCCCCCH-HHHHHHHHHH---HHcCCHh------HHHH
Q 006630 237 ERFKPSLRHFTSLLYGWCKEGKLV------EAKYVLVQMK-DAGFEPDI-VVYNNLLSGY---AQMGKMT------DAFE 299 (638)
Q Consensus 237 ~~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~-~~g~~p~~-~~~~~ll~~~---~~~g~~~------~a~~ 299 (638)
.+ ..+...|...+..-.+.+..- .-.+.|+-.. -.++.|-. ..|+..+... -..|.++ ....
T Consensus 104 ~k-~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 104 KK-SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hh-hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 54 336888888887666654221 1122233222 24455533 3444444433 2334444 4445
Q ss_pred HHHHHHHcCCCCCHHhHHHH------HHHHH---hcC----CHHHHHHHHHHHHH--cCCC----CCHHH----------
Q 006630 300 LLKEMRRKGCDPNANSYTVL------IQALC---RME----KMEEANRAFVEMER--SGCE----ADVVT---------- 350 (638)
Q Consensus 300 ~~~~~~~~g~~~~~~~~~~l------i~~~~---~~g----~~~~A~~~~~~m~~--~g~~----~~~~~---------- 350 (638)
.+.+++..-+..=...|+-. ++-.. -.| -+-.|...++++.. .|+. .+..+
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 55555543222111122111 10000 001 13345555555432 1211 11111
Q ss_pred -HHHHHHHHHhc-----C-CHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 351 -YTTLISGFCKS-----R-KIDR-CYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 351 -~~~li~~~~~~-----g-~~~~-A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
|-..|.--... | -..+ .--++++.... +.-....|.---..+...++-+.|++........ .|.. .-
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL--~~ 337 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSL--TM 337 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCch--he
Confidence 22222211111 1 1111 11112222221 1112223322233344455555555544433221 1221 11
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--------------CC---------------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEA--------------AS---------------LSPGTDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~--------------~~---------------~~p~~~~~~~li~~~~~~g~~~~A~ 473 (638)
.+...|.-..+-+.....|+.... .+ ...-...|...++...+..-++.|.
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 111122222222222222221110 00 0011234555666666666667777
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCHHHHHHHHHHHH
Q 006630 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAW-TIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 474 ~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
.+|-++.+.++. .++...+++++.-+ ..|+...|-.+|+.-..+ -||...| +-.+.-+.+-++-..|..+|+..+
T Consensus 418 ~~F~k~rk~~~~-~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv 493 (660)
T COG5107 418 KLFIKLRKEGIV-GHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSV 493 (660)
T ss_pred HHHHHHhccCCC-CcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhH
Confidence 777777776643 45555566666543 346666777777765554 2333333 445566666777777777777554
Q ss_pred hCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 553 DADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 553 ~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.. +..+ ..+|..++..-.+-|++..+..+-++..+.-|+.
T Consensus 494 ~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 494 ER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 31 1222 3457777776667777777777777777766664
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.67 Score=46.11 Aligned_cols=422 Identities=10% Similarity=0.064 Sum_probs=233.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHH
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 211 (638)
...+.|..+|-.||.-|...+.+++..+++++|....| .-+.+|..-+++-...+++.....+|.+.+... .+...
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp--~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldL 111 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP--IMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDL 111 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc--cccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhH
Confidence 34577888999999999999999999999999986554 456678878887777889999999999888764 44556
Q ss_pred HHHHHHHHHhCCCHH------HHHHHHHHHhc--c-CCCCHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHCC
Q 006630 212 FGCLLDALCKNSSVK------EAAKLFDEMRE--R-FKPSLRHFTSLLYGWC---------KEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 212 ~~~li~~~~~~g~~~------~A~~~~~~~~~--~-~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g 273 (638)
|..-++-..+.+..- ...+.|+-... . .+.....|+..+..+- ++.+++...+.+.+|+..-
T Consensus 112 W~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP 191 (660)
T COG5107 112 WMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTP 191 (660)
T ss_pred HHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCc
Confidence 665555544433111 11222332222 1 2334445655444322 2334455566666666431
Q ss_pred CCC------CHHHHHHHHHHHHH---cC----CHhHHHHHHHHHHH--cCCC----CCHHhHHH-----------HHHHH
Q 006630 274 FEP------DIVVYNNLLSGYAQ---MG----KMTDAFELLKEMRR--KGCD----PNANSYTV-----------LIQAL 323 (638)
Q Consensus 274 ~~p------~~~~~~~ll~~~~~---~g----~~~~a~~~~~~~~~--~g~~----~~~~~~~~-----------li~~~ 323 (638)
+.- |-..|..=++-... .| -+..|.+.++++.. .|+. .+..+++- .|.-=
T Consensus 192 ~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE 271 (660)
T COG5107 192 MGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWE 271 (660)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHh
Confidence 111 11111111111110 01 23445555555532 2321 12222222 12111
Q ss_pred Hhc-----CC-H-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHh
Q 006630 324 CRM-----EK-M-EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIML-AHEK 395 (638)
Q Consensus 324 ~~~-----g~-~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~ 395 (638)
... |+ . +...-+|++.... +.-....|----.-+...++-+.|+...+.-... .|+ ++..+. .+.-
T Consensus 272 ~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps---L~~~lse~yel 345 (660)
T COG5107 272 MENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS---LTMFLSEYYEL 345 (660)
T ss_pred hcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc---hheeHHHHHhh
Confidence 110 11 1 1111122222211 0112333333333344456666666655443221 222 111111 1111
Q ss_pred cCCHHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 396 KEELEECVELMGEMRK--------------IGC---------------VPDVSNYNVVIRLACKLGELKEAVNVWNEMEA 446 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~--------------~~~---------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 446 (638)
..+.+.....|+.+.+ .+. ..-..+|..++..-.+..-++.|..+|-+..+
T Consensus 346 ~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk 425 (660)
T COG5107 346 VNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK 425 (660)
T ss_pred cccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 1222221111111100 000 11234566777777788889999999999998
Q ss_pred CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 006630 447 AS-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL-KALLNSLLRAQKVEMAKDVWSCIVTKGCELN 524 (638)
Q Consensus 447 ~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~ 524 (638)
.+ +.+++..+++++.-++. |+..-|..+|+.-+..- ||...| ...+.-+.+.++-+.|+.+|+..+.+ +..+
T Consensus 426 ~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f----~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~ 499 (660)
T COG5107 426 EGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF----PDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKT 499 (660)
T ss_pred cCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC----CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHh
Confidence 88 56788889999987765 67788999998766553 444433 44566778899999999999977655 2223
Q ss_pred --HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006630 525 --VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571 (638)
Q Consensus 525 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 571 (638)
...|..||+--..-|+...+..+=++|.+. .|...+.....+-|.
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~ 546 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYA 546 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHh
Confidence 567999999888999999999888888754 566555555554443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.27 Score=45.06 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=24.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 508 (638)
+..-|.+.|.+..|..-++.+++.-..++.....+..++.++.+.|..+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~ 196 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQA 196 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHH
Confidence 44556666666666666666665532111112344455555555555553
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0063 Score=45.91 Aligned_cols=65 Identities=20% Similarity=0.193 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhC--CCC---CC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDA--DVM---PQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~---p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
.+++.+..+|...|++++|+..|++.++. ... |+ ..++..+...+...|++++|++++++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45677777788888888888888777642 111 22 3457778888888888888888888888764
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.77 Score=45.85 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHHH----cCCHHHHHHHHHHHHHCCCCC
Q 006630 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN-------VVIRLACK----LGELKEAVNVWNEMEAASLSP 451 (638)
Q Consensus 383 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~li~~~~~----~g~~~~A~~~~~~m~~~~~~p 451 (638)
..+|..++....+.++...|.+.+.-+.-. .|+...-. .+.+..+. .-+..+=+.+|+.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 347788888888888888888888777653 34333221 22222221 112334455666666554211
Q ss_pred CHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCCCcHHHHHHHH----HHHHH---cCCHHHHHHHHHHHHHcC
Q 006630 452 GTDSFVVMV---HGFLGQGC-LIEACEYFKEMVGRGLLSAPQYGTLKALL----NSLLR---AQKVEMAKDVWSCIVTKG 520 (638)
Q Consensus 452 ~~~~~~~li---~~~~~~g~-~~~A~~~~~~m~~~~~~~~p~~~~~~~ll----~~~~~---~g~~~~A~~~~~~~~~~~ 520 (638)
-..-..|+ .-+-+.|. -++|+++++..++-. +-|...-+.+. .+|.. ...+.+-..+-+-+.+.|
T Consensus 376 -qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft---~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~g 451 (549)
T PF07079_consen 376 -QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT---NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVG 451 (549)
T ss_pred -HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 11112222 23444555 788888888887754 23433332222 22221 222333333333334446
Q ss_pred CCCC----HHHHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 521 CELN----VYAWTIWIHS--LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 521 ~~p~----~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
+.|- ...-|.+.++ +..+|++.++.-+-.-+. .+.|++.+|..++-......++++|-.++.
T Consensus 452 l~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 452 LTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred CCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6653 3345566554 557889988876655544 357888888888877777788888777664
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.96 Score=45.79 Aligned_cols=420 Identities=11% Similarity=0.077 Sum_probs=208.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHhchhCCCCCCH
Q 006630 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRR-FASARMVKKAIEVLDEMPKYGCEPDE 209 (638)
Q Consensus 131 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~~~~~~A~~~~~~m~~~g~~~~~ 209 (638)
...|.+|+..|...+...-+.+.+.+.-.+|..|....|..++ .|.....- |-.+.+++.|.++|.+.++.+ +-++
T Consensus 98 t~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~d--LWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp 174 (568)
T KOG2396|consen 98 TNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPD--LWIYAAKWEFEINLNIESARALFLRGLRFN-PDSP 174 (568)
T ss_pred HHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCch--hHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCCh
Confidence 3457789999999998888888899999999999999887555 44433332 333445999999998888764 3334
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH--HhccCCCC--------HHHHHHHH------HHHHhc---------CCHHHHH-
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDE--MRERFKPS--------LRHFTSLL------YGWCKE---------GKLVEAK- 263 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~--~~~~~~~~--------~~~~~~li------~~~~~~---------g~~~~A~- 263 (638)
..|...+++-.. .+.++..+ .......+ ...|+... .+..+. ....+-.
T Consensus 175 ~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k 249 (568)
T KOG2396|consen 175 KLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQK 249 (568)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHH
Confidence 455444433211 01111100 00000000 00111100 000000 0011100
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 264 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
.+.+.+.. +.+-++.+|.. .|.+.++-.......+ +...-..+.-.-+.+....+|++..+.
T Consensus 250 ~i~d~~~~-~~~~np~~~~~------------laqr~l~i~~~tdl~~----~~~~~~~~~~~~k~s~~~~v~ee~v~~- 311 (568)
T KOG2396|consen 250 NIIDDLQS-KAPDNPLLWDD------------LAQRELEILSQTDLQH----TDNQAKAVEVGSKESRCCAVYEEAVKT- 311 (568)
T ss_pred HHHHHHhc-cCCCCCccHHH------------HHHHHHHHHHHhhccc----hhhhhhchhcchhHHHHHHHHHHHHHH-
Confidence 11111111 11222223322 2222222222211111 111111111111223334666666654
Q ss_pred CCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCC
Q 006630 344 CEADVVTYTTLISGFCKSR------KIDRCYEILDSMIQR-GILPN-QLTYLHIMLAHEKKEELEE-CVELMGEMRKIGC 414 (638)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g------~~~~A~~~~~~m~~~-~~~p~-~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~ 414 (638)
-|+...|+..|..|...- .+..-+.+++...+. +..++ ...|..+...++......+ |..+..+ ++
T Consensus 312 -l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f 386 (568)
T KOG2396|consen 312 -LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LF 386 (568)
T ss_pred -hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----Hh
Confidence 456667777776665432 333444555554443 23332 3345555444444443222 2222222 23
Q ss_pred CCCHHHHHHHHHHHHHcC-CHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-H-HHHHHHhCCCCCCCcH
Q 006630 415 VPDVSNYNVVIRLACKLG-ELK-EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC-E-YFKEMVGRGLLSAPQY 490 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g-~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~-~~~~m~~~~~~~~p~~ 490 (638)
..+...|-.-+....+.. ++. .-...|+.....-..+....|+... +...+.... . ++..+...+ .|+.
T Consensus 387 ~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~----~~dsl~~~~~~~Ii~a~~s~~---~~~~ 459 (568)
T KOG2396|consen 387 RDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS----EGDSLQEDTLDLIISALLSVI---GADS 459 (568)
T ss_pred cchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh----hccchhHHHHHHHHHHHHHhc---CCce
Confidence 445555544444333221 111 1222333343322233334454444 111122221 1 222222222 3554
Q ss_pred HHH-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHHh-CCCCCCHHHHHH
Q 006630 491 GTL-KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL---FSNGHVKEACSYCLDMMD-ADVMPQPDTFAK 565 (638)
Q Consensus 491 ~~~-~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ 565 (638)
.|+ +.++..+...|-+..|+.++..+... .+|....|.-+|..- ...| ..-+..+|+.|.. .| .|+..|..
T Consensus 460 ~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~ 535 (568)
T KOG2396|consen 460 VTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMD 535 (568)
T ss_pred eehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHH
Confidence 444 45677788899999999999999876 466788888877542 2233 7778888988876 55 77888888
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH-HHh
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKM-AAE 592 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~-~p~ 592 (638)
.+.--..+|..+.+-.++-++.+. +|+
T Consensus 536 y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 536 YMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHhhccCCCcccccHHHHHHHHhhChh
Confidence 888778889999998888888764 444
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.058 Score=46.53 Aligned_cols=70 Identities=20% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-----AGFEPDIVV 280 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 280 (638)
+...++..+...|++++|..+.+.+....|-|...|..+|.+|...|+..+|.+.|+++.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555566667777777777766666666666777777777777777777766666542 355665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.91 Score=47.26 Aligned_cols=86 Identities=14% Similarity=0.135 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----------
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTD---------- 454 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------- 454 (638)
+...+...+-+...+..|.++|..|-.. ..++++....+++++|..+-+..++. .||+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhh
Confidence 3444444444555555666666655421 34556666677777777766665543 23321
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 455 -SFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 455 -~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
-|.---.+|.+.|+-.||.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 111112344455555666666655543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.15 Score=52.74 Aligned_cols=89 Identities=15% Similarity=0.202 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCHHHHHHH---------HHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHH
Q 006630 316 YTVLIQALCRMEKMEEANRA---------FVEMERSGCEADVVTYTTLISGFCKSRK--IDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~~~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~ 384 (638)
+.+-+-.|...|.+++|.++ ++.+... ..+...++..=.+|.+..+ +-+.+.-+++|.++|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 34444456666766666543 1111111 1123334444455655444 334455567788888888775
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
. +...|+-.|++.+|.++|.+-
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHc
Confidence 4 345566778888888877653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0032 Score=41.28 Aligned_cols=40 Identities=10% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchh
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
.+|..+..+|...|++++|+++++++++.+|+++.+...+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 3567788888888888888888888888888888765443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.86 Score=42.23 Aligned_cols=227 Identities=18% Similarity=0.095 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006630 362 RKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKI-GCVPDVSNYNVVIRLACKLGELKEAVN 439 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 439 (638)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+....+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444444444433221 12344455555556666666666665555431 223444455555556666666777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 440 VWNEMEAASLSPGTDSFVVMVH-GFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
.+.........+ ......... .+...|++++|...+.+..............+......+...++.+.+...+.....
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666543222 122222233 567777777777777777552200001233333344445667788888888887776
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 519 KGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 519 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.. .. ....+..+...+...+++++|...+...... .|+ ...+..+...+...++.+.+...+.+.++..|.
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 52 22 3566777777777888888888888777654 343 344444555555556788888888888888776
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.023 Score=42.09 Aligned_cols=56 Identities=13% Similarity=0.029 Sum_probs=33.3
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
..|.+.+++++|.++++.+....|.+...|......+.+.|++++|.+.|+...+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 34555566666666666665555555566666666666666666666666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.4 Score=44.36 Aligned_cols=162 Identities=14% Similarity=0.157 Sum_probs=86.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc--H
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG---TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ--Y 490 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~--~ 490 (638)
|-...|+.-+. -.+.|++++|.+.|+.+.... +-+ ..+-..++-++.+.+++++|+..+++.+..... .|+ .
T Consensus 33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n~dY 109 (254)
T COG4105 33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPNADY 109 (254)
T ss_pred CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCChhH
Confidence 33444554443 456788888888888887653 222 245556667777888888888888888876532 233 3
Q ss_pred HHHHHHHHHHH----HcCCHHH---HHHHHHHHHHcCCCCCHHH------------------HHHHHHHHHccCCHHHHH
Q 006630 491 GTLKALLNSLL----RAQKVEM---AKDVWSCIVTKGCELNVYA------------------WTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 491 ~~~~~ll~~~~----~~g~~~~---A~~~~~~~~~~~~~p~~~~------------------~~~li~~~~~~g~~~~A~ 545 (638)
..|...+.-+. ...+... |..-|++++.+ =||..- =..+..-|.+.|.+..|.
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 33333333222 1223333 33444444443 344210 011233455566666666
Q ss_pred HHHHHHHhCCCCCC----HHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 546 SYCLDMMDADVMPQ----PDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 546 ~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
.-+++|++. -|+ ...+..+..+|...|-.++|.+...
T Consensus 188 nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 188 NRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 666666553 221 1224445556666666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.37 Score=41.48 Aligned_cols=87 Identities=14% Similarity=-0.006 Sum_probs=47.3
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
+.+.|++++|..+|.-+...+. -+..-+..|..+|...+++++|...|......+. -|+..+-....+|...|+.+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDF---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 4455666666666666555442 3333445555555566666666666665544421 13333334455666666666
Q ss_pred HHHHHHHHHHh
Q 006630 543 EACSYCLDMMD 553 (638)
Q Consensus 543 ~A~~~~~~m~~ 553 (638)
.|...|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666655554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.055 Score=50.39 Aligned_cols=102 Identities=22% Similarity=0.265 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCC-HHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKG----CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA-DVMPQ-PDTFAK 565 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~-~~t~~~ 565 (638)
.|...+. +.+.|++..|...|...++.. ..|+... -|..++...|++++|..+|..+.+. +-.|- +..+..
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3544443 345677888888888887762 2333333 4778888888888888888888763 22232 466777
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|.......|+.++|..+++++++..|+.+.+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 7777888889999999999888888876654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.1 Score=41.44 Aligned_cols=130 Identities=11% Similarity=0.014 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-----HHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN-----VVIRL 427 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~li~~ 427 (638)
.++..+.-.|.+.-.+..+.+.++...+.++.....+.+...+.|+.+.|...|+...+..-..+..+.+ .....
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i 261 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL 261 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh
Confidence 3444444444444455555555544434444444444444445555555555555443321122222222 22223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
|.-.+++..|...|.+++..+ +.|+..-|.-.-++.-.|+..+|++..+.|.+..
T Consensus 262 ~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 262 HLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred eecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 444555556666666655554 3344444443333444556666666666665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.11 E-value=2.2 Score=44.48 Aligned_cols=144 Identities=10% Similarity=0.060 Sum_probs=100.3
Q ss_pred HHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC
Q 006630 125 YMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG 204 (638)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 204 (638)
..|... +...-+...|+.+|.---.....+.+..+++.+....|. -..-|......=.+.|..+.+..+|++.+ .|
T Consensus 33 ~~we~~-~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl--~~gyW~kfA~~E~klg~~~~s~~Vfergv-~a 108 (577)
T KOG1258|consen 33 DYWEIL-SNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPL--CYGYWKKFADYEYKLGNAENSVKVFERGV-QA 108 (577)
T ss_pred hHhhcc-ccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHHhhhHHHHHHHHHHHH-Hh
Confidence 345543 334556677888877666666667788888888877654 22334444444457788899999999877 45
Q ss_pred CCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHhcc---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 205 CEPDEFVFGCLLDALCK-NSSVKEAAKLFDEMRER---FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 205 ~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
++.+...|...+..++. .|+.+.....|+....- .--+...|...|..-..++++.....++++.++.
T Consensus 109 ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 109 IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 66677777766655544 57788888888877653 2224567888888888888899999999988863
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.02 Score=50.00 Aligned_cols=96 Identities=15% Similarity=0.187 Sum_probs=61.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELN-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLK 571 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~ 571 (638)
+-+.+.|++++|..-|..++.. +++. .+.|..-..++.+.+.++.|+.-+.+.++. .|+. ..+..-..+|.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPTYEKALERRAEAYE 179 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--CchhHHHHHHHHHHHH
Confidence 4466778888888888777775 2222 223444455677777788887777777654 3422 22333344677
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+...++.|.+-|+++++.+|....+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHH
Confidence 7777888888888888887776544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.18 Score=50.89 Aligned_cols=88 Identities=8% Similarity=-0.121 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP-DTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
..+|.+..+++++.+.. |......+..++...|+++.|..+|++.... .||. .+|......+.-.|+.++|.+..+
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34555555556555322 5555555666666666666666666666543 4542 334444444555566777777777
Q ss_pred HHHHHHHhcccc
Q 006630 585 KVRKMAAERQIT 596 (638)
Q Consensus 585 ~~~~~~p~~~~~ 596 (638)
++++++|....+
T Consensus 397 ~alrLsP~~~~~ 408 (458)
T PRK11906 397 KSLQLEPRRRKA 408 (458)
T ss_pred HHhccCchhhHH
Confidence 766666665443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.021 Score=43.03 Aligned_cols=61 Identities=13% Similarity=0.128 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTK----GC-ELN-VYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
++..+...|...|++++|+..|++.++. |. .|+ ..++..+..++...|++++|++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444555555555555555554432 11 111 3345555666666666666666665544
|
... |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.42 Score=50.05 Aligned_cols=161 Identities=15% Similarity=0.092 Sum_probs=87.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCC-C------HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKP-S------LRHFTSLLYGWCK----EGKLVEAKYVLVQMKDAGFEPDIVVY 281 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~------~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~ 281 (638)
..++....=.|+-+.+++.+....+.... . ...|...+..++- ....+.|.+++..+.+. -|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHH
Confidence 34455555556666666666554332100 0 1123333333332 34566777777777765 4565555
Q ss_pred HHH-HHHHHHcCCHhHHHHHHHHHHHcC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 006630 282 NNL-LSGYAQMGKMTDAFELLKEMRRKG---CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS- 356 (638)
Q Consensus 282 ~~l-l~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~- 356 (638)
... .+.+...|++++|.+.|+...... .+.....+--+.-.+.-..++++|.+.|..+.+.. ..+...|.-+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 433 344555677777777777554311 11122334445556777788888888888888653 223333333322
Q ss_pred HHHhcCCH-------HHHHHHHHHHHH
Q 006630 357 GFCKSRKI-------DRCYEILDSMIQ 376 (638)
Q Consensus 357 ~~~~~g~~-------~~A~~~~~~m~~ 376 (638)
++...|+. ++|.++|.+...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33456666 788888877654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.00 E-value=1.7 Score=42.20 Aligned_cols=123 Identities=13% Similarity=0.087 Sum_probs=59.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHH-------HHHHhcC-CHHHHHHHHHhchhC--------CCCCCH---
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILM-------RRFASAR-MVKKAIEVLDEMPKY--------GCEPDE--- 209 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li-------~~~~~~~-~~~~A~~~~~~m~~~--------g~~~~~--- 209 (638)
.+.|+++.|..++.+.....+ ..++.....+. ......+ +++.|..++++..+. ...++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 366777778777777765431 12222222222 2223344 666665555443321 112222
Q ss_pred --HHHHHHHHHHHhCCCHH---HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 210 --FVFGCLLDALCKNSSVK---EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 210 --~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
.++..|+.+|...+..+ +|..+++.+...++.....+-.-+..+.+.++.+++.+.+.+|+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23445555555544433 3444444444444434444545555555556666666666666553
|
It is also involved in sporulation []. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.93 E-value=1.8 Score=43.16 Aligned_cols=33 Identities=21% Similarity=0.187 Sum_probs=17.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 256 EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 256 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
.|+.++|++++..+....-.++..+|..+.+.|
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIy 227 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIY 227 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 455555555555544433345555555554444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.46 Score=45.36 Aligned_cols=114 Identities=9% Similarity=-0.029 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFV----VMVHGFLGQGCLIE 471 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~----~li~~~~~~g~~~~ 471 (638)
.|+..+|...++++.+. +|.|...++..=++|.-.|+.+.-...++++...- .+|...|. ...-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555443 34455555555555555555555555555554331 12221111 22333444555555
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
|.+.-++..+.+ +-|.-.-.++...+--.|+..++.++..
T Consensus 194 AEk~A~ralqiN---~~D~Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 194 AEKQADRALQIN---RFDCWASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHhhccCC---CcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence 555555555444 2333333444444445555555555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.25 Score=41.44 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHhcccc
Q 006630 576 RQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...|...++.+++.-|+++.+
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHHHHHCcCChhH
Confidence 557777777777777776554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.23 Score=41.19 Aligned_cols=100 Identities=12% Similarity=0.045 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
|..++..++.++++.|+.+....+.+..-.-++ .... ..+. .-......|+.....++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~--~~~~-----------~~~~---------~~~~spl~Pt~~lL~AI 58 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDV--NGKK-----------KEGD---------YPPSSPLYPTSRLLIAI 58 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCC--CCcc-----------ccCc---------cCCCCCCCCCHHHHHHH
Confidence 345666677777777777666666654432221 0000 0000 01122467888899999
Q ss_pred HHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~~~~~ 573 (638)
+.+|+.+|++..|+++++...+ .++.-+..+|..|+.-+...
T Consensus 59 v~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 59 VHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988865 66777788899888855544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.11 Score=44.79 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=18.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
+...|++++|+.+.+.+.... |-+...+..++.++...|+..+|.++|+.
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 333344444444444333333 22333333334444444444444433333
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=42.97 Aligned_cols=95 Identities=12% Similarity=0.085 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
..++..+|-++++.|+.+....+++..-..+..... ..+. .-......|+..+..+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~------------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK------------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc------------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 345666677777777777666666554322211000 0000 1122344566666666666
Q ss_pred HHHhCCCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRER--FKPSLRHFTSLLYGW 253 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~li~~~ 253 (638)
+|+..|++..|.++.+.+.+. .+-...+|..|+.-.
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 666666666666666555443 333455555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.22 Score=50.12 Aligned_cols=70 Identities=17% Similarity=0.004 Sum_probs=59.0
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHhchhC
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT-EVFVILMRRFASARMVKKAIEVLDEMPKY 203 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 203 (638)
.+.+...|+.+..+|.+.|++++|+..|++....+|..... .+|..+..+|...|++++|++.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35577889999999999999999999999998888763322 45888999999999999999999998875
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.72 E-value=2.6 Score=42.31 Aligned_cols=388 Identities=13% Similarity=0.150 Sum_probs=191.2
Q ss_pred HhcCChhHHHHHHHHHHhc--C--CCCCCHHH--------H-HHHHHHHHhcCCHHHHHHHHHhchhC----CCCCCHHH
Q 006630 149 SKMRKFGAVWALMEEMRKE--K--PQLITTEV--------F-VILMRRFASARMVKKAIEVLDEMPKY----GCEPDEFV 211 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~--~--~~~~~~~~--------~-~~li~~~~~~~~~~~A~~~~~~m~~~----g~~~~~~~ 211 (638)
-+.+.+.+|.+.+..-... + +...+... + +..+.++...|++.+++.++++|... .+.-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3667777777777655543 1 11111111 1 33455666677777777766665432 33356667
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSL-RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
|+.++-++.+. .|-++.+...-|. .-|--++-.|.+.=+.-+ .-.-..+.|.......++....-
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d------~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFD------QRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHh------hchHHhhCcHHHHHHHHHHHHHh
Confidence 77666666542 2222222111111 112233333332211111 10001123333333333333222
Q ss_pred cC--CHhHHHHHHHHHHHcCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC
Q 006630 291 MG--KMTDAFELLKEMRRKGCDPNAN-SYTVLIQALCRMEKMEEANRAFVEMERSGC----EADVVTYTTLISGFCKSRK 363 (638)
Q Consensus 291 ~g--~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----~~~~~~~~~li~~~~~~g~ 363 (638)
.. ...--.++++.-...-+.|+-. +...|+..+.+ +.+++..+-+.+....+ +.=+.++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 2222334444444444555533 23344444443 55555555554443211 1124567778888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHH----------HHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---HHH
Q 006630 364 IDRCYEILDSMIQRGILPNQL----------TYLHIMLA-HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR---LAC 429 (638)
Q Consensus 364 ~~~A~~~~~~m~~~~~~p~~~----------t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~---~~~ 429 (638)
...|-..+.-+.-- .|+.. ++..++.. =...-+...-+.+++.+...++.. ......|+. -+-
T Consensus 314 T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHH
Confidence 88888887766543 22222 22211110 001112333344555554433211 112222222 234
Q ss_pred HcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHHhCCCCCCCc----HHHHHHHH
Q 006630 430 KLGE-LKEAVNVWNEMEAASLSPGTDSFVVMV----HGFLG---QGCLIEACEYFKEMVGRGLLSAPQ----YGTLKALL 497 (638)
Q Consensus 430 ~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~~ll 497 (638)
+.|. -++|+.+++.+.+-. +-|...-|.+. ..|.+ ...+..-+.+-+-..+.|+ +|- ...-+.|.
T Consensus 391 ~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl--~~i~i~e~eian~La 467 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL--TPITISEEEIANFLA 467 (549)
T ss_pred hcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC--CcccccHHHHHHHHH
Confidence 4555 788999999888753 34444433322 22322 1223333333333445666 332 22333333
Q ss_pred HH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006630 498 NS--LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAK 565 (638)
Q Consensus 498 ~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 565 (638)
+| +...|++.++.-.-.-+.+ +.|.+.+|..++-++....++++|..++..+ +|+..++.+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 33 4578999998766555555 6899999999999999999999999998764 566666543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.02 Score=34.88 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467788888888899999999999999988874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.64 Score=44.91 Aligned_cols=230 Identities=12% Similarity=0.085 Sum_probs=108.9
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHH
Q 006630 358 FCKSRKIDRCYEILDSMIQR--GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI--GCVPDV---SNYNVVIRLACK 430 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~---~~~~~li~~~~~ 430 (638)
+....+.++|+..+..-..+ +..---.++..+..+.++.|.+++++..--..+.. ...... ..|-.+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778888777766553 11112345556666677777666655432221111 011111 122222233333
Q ss_pred cCCHHHHHHHHHHHHHC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCC--cHHHHHHHHHHHHHc
Q 006630 431 LGELKEAVNVWNEMEAA-SLSPG---TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAP--QYGTLKALLNSLLRA 503 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~-~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~p--~~~~~~~ll~~~~~~ 503 (638)
..++.+++.+-..-... |..|. .....+|..++...+.++++++.|+...+.-.. ..| ...++..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 33333333333322211 11110 112334555555566677777777766553110 011 233566666666777
Q ss_pred CCHHHHHHHHHHHHHc----CCCCCH-HHHH-----HHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHH
Q 006630 504 QKVEMAKDVWSCIVTK----GCELNV-YAWT-----IWIHSLFSNGHVKEACSYCLDMMD----ADVMPQ-PDTFAKLMR 568 (638)
Q Consensus 504 g~~~~A~~~~~~~~~~----~~~p~~-~~~~-----~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~ 568 (638)
.++++|.-+..++.+. ++. |. .-|. .|.-+|...|..-+|.+..++..+ .|-.|- ......+.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aD 254 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFAD 254 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 7777766665555432 221 11 1122 233355566666666666665533 332221 122445566
Q ss_pred HHHhhcCHHHHHHHHHHHHH
Q 006630 569 GLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~ 588 (638)
.|+..|+.|.|..-|+.+..
T Consensus 255 IyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 255 IYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHhcccHhHHHHHHHHHHH
Confidence 66666777666655555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.24 Score=46.25 Aligned_cols=98 Identities=18% Similarity=0.166 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSP---GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 496 (638)
.|+.-++ +.+.|++..|...|....+.. +- ....+--|...+...|++++|..+|..+.+.....+--+.++..|
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 5666665 456778899999888888763 21 124566678888888999999888888887654433345677778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHc
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 88888888888888888888776
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.61 E-value=2.5 Score=41.47 Aligned_cols=291 Identities=15% Similarity=0.103 Sum_probs=134.5
Q ss_pred HHHHHHHHH--hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHhchhCCCCCCHHH--HHH
Q 006630 141 YRALIKSLS--KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA--SARMVKKAIEVLDEMPKYGCEPDEFV--FGC 214 (638)
Q Consensus 141 ~~~li~~~~--~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~~~~~~m~~~g~~~~~~~--~~~ 214 (638)
|.+|-.++. -.|+-..|.++-.+..+.- .-|...+..++.+-. -.|+++.|.+-|+.|... |.... ...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~ll--ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLL--SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhh--hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 445544443 3456666666655443221 123333333443322 357777777777777642 22211 122
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHH--HHHHHHHHHH-
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG-FEPDIVV--YNNLLSGYAQ- 290 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~--~~~ll~~~~~- 290 (638)
|.-.--+.|..+.|...-+..-..-+.-...+.+.+...|..|+++.|+++.+.-+... +.++..- -..|+.+-+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22222356777777777666655555556677777777777777777777777655432 2333221 1122221111
Q ss_pred --cCCHhHHHHHHHHHHHcCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 291 --MGKMTDAFELLKEMRRKGCDPNANS-YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367 (638)
Q Consensus 291 --~g~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (638)
..+...|...-.+..+ +.||..- -..-...+.+.|++.++-.+++.+-+. .|.+..+...+ +.+.|+ -+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~gd--ta 311 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSGD--TA 311 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCCC--cH
Confidence 1234444444333333 2333221 122334556666666666666666655 33333332211 223333 22
Q ss_pred HHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Q 006630 368 YEILDSMIQR-GILP-NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLAC-KLGELKEAVNVWNEM 444 (638)
Q Consensus 368 ~~~~~~m~~~-~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m 444 (638)
+.-+++..+. .++| +..+...+..+....|++..|..--+..... .|....|-.|.+.-. ..|+-.++...+.+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2222222211 1222 2334444444445555555544444333332 344444444444322 225555555555444
Q ss_pred HH
Q 006630 445 EA 446 (638)
Q Consensus 445 ~~ 446 (638)
.+
T Consensus 390 v~ 391 (531)
T COG3898 390 VK 391 (531)
T ss_pred hc
Confidence 43
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.61 E-value=3.5 Score=43.02 Aligned_cols=105 Identities=10% Similarity=0.216 Sum_probs=72.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHhchhC-CCC-CC
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA-SARMVKKAIEVLDEMPKY-GCE-PD 208 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~-g~~-~~ 208 (638)
+.|+-..--|......=.+.|..+.+.++|++-...-| .+...|...+..+. ..|+.+.....|+..... |.. ..
T Consensus 73 ~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip--~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S 150 (577)
T KOG1258|consen 73 SKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIP--LSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLS 150 (577)
T ss_pred hhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhc
Confidence 34444444566666666788899999999998877544 35566665555444 457788888888887754 432 23
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRER 238 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 238 (638)
...|-..|..-..++++.....+++++.+-
T Consensus 151 ~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 151 DPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred cHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 456777777777788888888999888763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.21 Score=50.29 Aligned_cols=62 Identities=19% Similarity=0.081 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHh
Q 006630 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDE----FVFGCLLDALCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~ 236 (638)
+...++.+..+|...|++++|+..|++.++. .|+. .+|..+..+|.+.|++++|+..+++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555554443 2321 234445555555555555555554443
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.59 E-value=2.3 Score=41.33 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=23.3
Q ss_pred HcCCHhHHHHHHHHHHHc--CCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006630 290 QMGKMTDAFELLKEMRRK--GCDPNANSYTVLIQALCRMEKMEEANRA 335 (638)
Q Consensus 290 ~~g~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~~~~~g~~~~A~~~ 335 (638)
...+.+.|+..+.....+ ....-..++..+.++.++.|.+++++..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 445566666666554433 1111234455556666666666555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.077 Score=43.04 Aligned_cols=93 Identities=14% Similarity=0.068 Sum_probs=65.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhhcC
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP---DTFAKLMRGLKKLYN 575 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~ 575 (638)
++...|+++.|++.|.+.+.. .+.....||.-..++.-+|+.++|+.-+++.++..-.-.. ..|..-...|+..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 456778888888888888776 2336777888888888888888888888888763211121 124444456777788
Q ss_pred HHHHHHHHHHHHHHHHh
Q 006630 576 RQIAAEITEKVRKMAAE 592 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~ 592 (638)
.+.|+.-++.+-+++..
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 88888888888777654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.35 Score=50.60 Aligned_cols=128 Identities=15% Similarity=0.092 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHhCCCCCCCcHH
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL----------GQGCLIEACEYFKEMVGRGLLSAPQYG 491 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~~~~~~p~~~ 491 (638)
..++....=.|+-+.+++.+.+..+.+-.-.+..--.|+.-|. .....+.|.++++.+...- |+..
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y----P~s~ 267 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY----PNSA 267 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC----CCcH
Confidence 4445555556777777777766554321111111111111110 1334555666666666553 4444
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 492 TLKAL-LNSLLRAQKVEMAKDVWSCIVTKG---CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 492 ~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.|... .+.+...|++++|++.|+.+.... .+.....+--+..++...+++++|...|..+.+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 33222 233445566666666666544310 011122233344555556666666666666655
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.029 Score=34.05 Aligned_cols=33 Identities=21% Similarity=0.181 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
..|..+...+...|++++|++.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356778888888899999999999999988875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.45 E-value=1.6 Score=39.93 Aligned_cols=211 Identities=11% Similarity=0.122 Sum_probs=104.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHH
Q 006630 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212 (638)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 212 (638)
.+..-...|..-..+|-...+|++|-..+.+..+-... +...|. ....++.|.-+.++|.+. +--+..|
T Consensus 26 d~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEn--nrslfh-------AAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 26 DWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred CchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 33444456777777788888888888877666532211 211121 133456666666666543 1223456
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C--CCCCHHHHHHHHHH
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA---G--FEPDIVVYNNLLSG 287 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g--~~p~~~~~~~ll~~ 287 (638)
+.-..+|..+|..+.|-..+++.-+ ...+.++++|+++|.+.... + .+.-...+...-+.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak---------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAK---------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHH---------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 6677788888888888777776432 12233444455544443321 0 00011122333344
Q ss_pred HHHcCCHhHHHHHHHHHHHc----CCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHH
Q 006630 288 YAQMGKMTDAFELLKEMRRK----GCDPN-ANSYTVLIQALCRMEKMEEANRAFVEMERSG---CEADVVTYTTLISGFC 359 (638)
Q Consensus 288 ~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~ 359 (638)
+.+...+++|-..+.+-... .--++ -..|...|-.|.-..++..|.+.++.-.+.+ -.-+..+...|+.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 55555555554433322111 00111 1223444445555567777777776633321 1224455556665543
Q ss_pred hcCCHHHHHHH
Q 006630 360 KSRKIDRCYEI 370 (638)
Q Consensus 360 ~~g~~~~A~~~ 370 (638)
.|+.+++-++
T Consensus 240 -~gD~E~~~kv 249 (308)
T KOG1585|consen 240 -EGDIEEIKKV 249 (308)
T ss_pred -cCCHHHHHHH
Confidence 4555555443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.2 Score=40.42 Aligned_cols=119 Identities=13% Similarity=0.089 Sum_probs=52.8
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFEL 300 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~ 300 (638)
..|++.+|..+|+......+.+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+..++
T Consensus 146 ~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l 225 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDL 225 (304)
T ss_pred hccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 44555555555555544444444455555555555555555555555544321111111111222333333333333333
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 301 LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 301 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
-...-.. +-|...-..+...|...|+.++|.+.+-.+.+
T Consensus 226 ~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 226 QRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred HHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3332221 11444444455555555666665555555443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=2.1 Score=43.54 Aligned_cols=111 Identities=9% Similarity=-0.031 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 512 (638)
...+|.+.-+...+.+ +.|......+..++...++++.|...|++....+ +....+|....-.+...|+.++|.+.
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~---Pn~A~~~~~~~~~~~~~G~~~~a~~~ 394 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS---TDIASLYYYRALVHFHNEKIEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC---CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3456666667777766 6677777777776677777888888888877765 23334444444456667888888888
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHH
Q 006630 513 WSCIVTKGCELN---VYAWTIWIHSLFSNGHVKEACSYCLD 550 (638)
Q Consensus 513 ~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 550 (638)
+++..+. .|. .......++.|+.++ .++|+++|-+
T Consensus 395 i~~alrL--sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 395 IDKSLQL--EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred HHHHhcc--CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 8776665 332 223334445565544 6667766644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.4 Score=37.55 Aligned_cols=42 Identities=14% Similarity=0.233 Sum_probs=22.1
Q ss_pred HHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC
Q 006630 180 LMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222 (638)
Q Consensus 180 li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 222 (638)
++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 4455555555555555555555444 24445555555555543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.36 Score=39.32 Aligned_cols=91 Identities=14% Similarity=-0.030 Sum_probs=56.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYA---WTIWIHSLF 536 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~---~~~li~~~~ 536 (638)
.+++..|+.+.|++.|.+.+..- +.....|+.-..++.-+|+.++|.+=+++.++. |.. .... |..-...|.
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~---P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLA---PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhc---ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHH
Confidence 35566777777777777777654 345667777777777777777777777777665 222 2222 222233456
Q ss_pred ccCCHHHHHHHHHHHHhCC
Q 006630 537 SNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~ 555 (638)
..|+.+.|..-|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 6677777777776665554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.97 Score=46.69 Aligned_cols=156 Identities=16% Similarity=0.187 Sum_probs=70.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEA 228 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 228 (638)
.-.++++++......-.-. |. ......+.+++.+-+.|..+.|+++-.. + ..-.+...++|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll-~~-i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------~---~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLL-PN-IPKDQGQSIARFLEKKGYPELALQFVTD---------P---DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTG-GG---HHHHHHHHHHHHHTT-HHHHHHHSS----------H---HHHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhc-cc-CChhHHHHHHHHHHHCCCHHHHHhhcCC---------h---HHHhHHHHhcCCHHHH
Confidence 3445566555554311111 11 1234455556656666666666555322 1 1123444556666666
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 006630 229 AKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 308 (638)
.++.++.. +...|..|.....+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....|
T Consensus 338 ~~~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 338 LEIAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 55443332 455666666666666666666666655431 3445555555566555555555544443
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 309 CDPNANSYTVLIQALCRMEKMEEANRAFVE 338 (638)
Q Consensus 309 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 338 (638)
- ++....++.-.|++++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23344444445555555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.9 Score=36.62 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=17.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFAS 186 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~ 186 (638)
++..+...+.+.....+++.+...++ .+....+.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~--~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS--ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc--cchhHHHHHHHHHHH
Confidence 34444444444444444444444332 233344444444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.06 Score=51.19 Aligned_cols=105 Identities=17% Similarity=0.108 Sum_probs=70.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCH
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 576 (638)
+-|.++|++++|++.|...+.. .| |.+++..-..+|.+..++..|..-+..++..+ ..-...|..-+.+-..+|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 3467888888888888777654 44 77777777778888888777777666665431 11122355555555567888
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhh
Q 006630 577 QIAAEITEKVRKMAAERQITFKMYKRRGE 605 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~~~~y~~~g~ 605 (638)
.+|.+-++.+++++|++-.+-..|.....
T Consensus 182 ~EAKkD~E~vL~LEP~~~ELkK~~a~i~S 210 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIELKKSLARINS 210 (536)
T ss_pred HHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence 88999999999999987666444444333
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.91 E-value=2.1 Score=40.64 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=63.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHH
Q 006630 147 SLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVK 226 (638)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~ 226 (638)
.+...|++.+|..+|.......|. +......+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~--~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE--NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc--cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 344566777777777776666554 344555566677777777777777766654321111111112233333333333
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 227 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
+...+-.+... .|.|...-..+...+...|+.++|++.+-.+.+
T Consensus 221 ~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33332222222 244556666666666666666666665555544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.5 Score=46.57 Aligned_cols=62 Identities=15% Similarity=0.114 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+++.+..+|.+.+.+.+|+......+..+ +++...+-.-..+|...|+++.|+..|+++++.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~---~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD---PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC---CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44455555555555555555555555554 344444444444555555555555555555543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.83 E-value=7.6 Score=42.52 Aligned_cols=188 Identities=15% Similarity=0.084 Sum_probs=99.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCC-CC-----CHHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHhCCCCCCCcHHH
Q 006630 429 CKLGELKEAVNVWNEMEAASL-SP-----GTDSFVVMVHG--FLGQGCLIEACEYFK--------EMVGRGLLSAPQYGT 492 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~-~p-----~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~~~~~~p~~~~ 492 (638)
+-.+++..|...++.|....- .| ....+...+.| +...|+.+.|...|. .....+. ..+..+
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~--~~El~i 449 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSK--FRELYI 449 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCc--chHHHH
Confidence 346889899999998875421 11 12233333333 445799999999997 3334442 222222
Q ss_pred HHHHHHHHH---Hc--CCHHH--HHHHHHHHHHc-CCC--CCHHHHHHHH-HHHHcc--CCHHHHHHHHHHHHh-C--CC
Q 006630 493 LKALLNSLL---RA--QKVEM--AKDVWSCIVTK-GCE--LNVYAWTIWI-HSLFSN--GHVKEACSYCLDMMD-A--DV 556 (638)
Q Consensus 493 ~~~ll~~~~---~~--g~~~~--A~~~~~~~~~~-~~~--p~~~~~~~li-~~~~~~--g~~~~A~~~~~~m~~-~--~~ 556 (638)
+ +.++.+. .. ...++ +.++++.+... .-. .+..+|..++ .++... -...++...+.+.++ . ..
T Consensus 450 l-a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~ 528 (608)
T PF10345_consen 450 L-AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKL 528 (608)
T ss_pred H-HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhh
Confidence 2 2222222 22 22223 66777766442 112 2334444443 333322 223355555554433 1 11
Q ss_pred CCCHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc---cccc----------chhhhhhhhhhHHHHHhhhhhh
Q 006630 557 MPQPDT--FAKLMRGLKKLYNRQIAAEITEKVRKMAAER---QITF----------KMYKRRGERDLKEKAKKQVDGR 619 (638)
Q Consensus 557 ~p~~~t--~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~----------~~y~~~g~~~~A~~~~~~~~~~ 619 (638)
..+..+ ...++..-.-.|+..+..+....+.++.... ...+ +.|...|+.++|..++++....
T Consensus 529 ~n~~l~~~~L~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 529 GNSQLLAILLNLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred ccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 122221 1223322222588888777777777766555 3221 5688999999999999886543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.83 E-value=4.6 Score=44.00 Aligned_cols=177 Identities=10% Similarity=0.129 Sum_probs=108.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006630 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (638)
++++++.+.+.+...- +. -.+|..+.+.|..+-|+...+.=. + -......+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~L-----vG----qaiIaYLqKkgypeiAL~FVkD~~---------t---RF~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNL-----VG----QAIIAYLQKKGYPEIALHFVKDER---------T---RFELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCc-----cc----HHHHHHHHhcCCcceeeeeecCcc---------h---heeeehhcCCHHHHHH
Confidence 4567776665543321 11 125666677788877776654321 1 1234457899999988
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCC
Q 006630 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCD 310 (638)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~ 310 (638)
.-..+. +..+|..|.......|+.+-|+..|++.+. |+.|--.|.-.|+.++-.++.+....+
T Consensus 665 ~akkld-----d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r--- 727 (1202)
T KOG0292|consen 665 AAKKLD-----DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIR--- 727 (1202)
T ss_pred HHHhcC-----cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhh---
Confidence 766654 678899999999999999999999888763 344444566678888777766655443
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 311 PNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377 (638)
Q Consensus 311 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (638)
-|..+ ......| .|++++-.+++..--. .+ ..|-+ -..+|.-++|.++.++....
T Consensus 728 ~D~~~-~~qnalY--l~dv~ervkIl~n~g~----~~-laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 728 NDATG-QFQNALY--LGDVKERVKILENGGQ----LP-LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred hhhHH-HHHHHHH--hccHHHHHHHHHhcCc----cc-HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 12211 1122223 4777777777665432 12 22221 13367778888888877663
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.86 Score=38.31 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=26.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 429 CKLGELKEAVNVWNEMEAASLSP---GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
.+.|++++|.+.|+.+..+- +. ....-..++.+|.+.+++++|+..+++.++..
T Consensus 21 l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 34455555555555555441 11 11233344555555555555555555555544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.79 E-value=3.5 Score=38.39 Aligned_cols=60 Identities=15% Similarity=0.156 Sum_probs=36.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
+..-|.+.|.+..|..-+++|++.-...+-....+-.+..+|...|..++|.+.-.-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 445567777777777777777776322122233455566677777777777666554433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.73 E-value=5.7 Score=43.35 Aligned_cols=24 Identities=17% Similarity=0.097 Sum_probs=12.0
Q ss_pred hhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|+++.|.+..+++- +-|.++..
T Consensus 517 ~~g~~~~AL~~i~~L~-liP~~~~~ 540 (613)
T PF04097_consen 517 HAGQYEQALDIIEKLD-LIPLDPSE 540 (613)
T ss_dssp HTT-HHHHHHHHHHTT--S-S-HHH
T ss_pred HcCCHHHHHHHHHhCC-CCCCCHHH
Confidence 4577777777766543 44544433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.72 E-value=7.8 Score=42.15 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR----RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~----~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
...-++++.+...++.|+.+...-. .+..+...+.. .+.+.|++++|.+.|-+-... ++|. .+|
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~------~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQH------LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcC------CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3455677777777877777755321 23333333333 344678888887776554422 1232 234
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
.-|.....+..-..+++.+.+..-.+...-+.|+.+|.+.++.+.-.++.+.-. .|.. ..-....+..|.+.+-.++
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 444455555555666666665545566667778888888888777666555433 2211 1113445566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
|.-+-..... .......++ -..+++++|++++..+.
T Consensus 482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 6655444322 333333333 34477788887777654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=1.1 Score=42.95 Aligned_cols=118 Identities=9% Similarity=-0.061 Sum_probs=69.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC---CCCCCHHHHHHHHHHHHhCCCH
Q 006630 149 SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY---GCEPDEFVFGCLLDALCKNSSV 225 (638)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~ 225 (638)
.-.|++.+|...++++.+..|. +.-.+...=.+|...|+...-...++++... +++...++...+.-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt--Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT--DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch--hhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 3456666666666777666543 4445555556666677776666666666532 2222222223333334456777
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 226 KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 226 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
++|++.-++..+-.+.|..+-.++...+--.|++.++.++..+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 7777776666665555666666666666667777777666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.65 E-value=7.8 Score=41.77 Aligned_cols=81 Identities=11% Similarity=0.036 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh---cCHH
Q 006630 505 KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN----GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL---YNRQ 577 (638)
Q Consensus 505 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~ 577 (638)
+.+.+...+......| +......+.+.|..- .+++.|...+......+ ....-.+...+-.- ..+.
T Consensus 454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~ 526 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLH 526 (552)
T ss_pred chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhH
Confidence 3444555555554433 444455555554433 24666666666655443 22222222222110 1256
Q ss_pred HHHHHHHHHHHHHHh
Q 006630 578 IAAEITEKVRKMAAE 592 (638)
Q Consensus 578 ~A~~~~~~~~~~~p~ 592 (638)
.|.+++.++.+.+..
T Consensus 527 ~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 527 LAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHhcCch
Confidence 677777766665544
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.97 Score=46.68 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=20.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDS 373 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 373 (638)
...++|+++.|.++.++. .+...|..|.......|+++-|.+.|.+
T Consensus 327 LAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k 372 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQK 372 (443)
T ss_dssp HHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 334445555544443322 1344455555555555555544444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.007 Score=36.90 Aligned_cols=28 Identities=11% Similarity=0.283 Sum_probs=17.3
Q ss_pred HHHHHHHHHhccccc----chhhhhhhhhhHH
Q 006630 583 TEKVRKMAAERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 583 ~~~~~~~~p~~~~~~----~~y~~~g~~~~A~ 610 (638)
++++++++|+++.++ .+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 456666666666664 4566666666664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.1 Score=32.21 Aligned_cols=31 Identities=19% Similarity=0.162 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 562 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+|..|...|.+.|++++|++++++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3667788888888888888888886655543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.48 E-value=6 Score=39.80 Aligned_cols=67 Identities=9% Similarity=-0.030 Sum_probs=48.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
...+|..++..+.+.|+++.|...+..+...+....+ .......-+..+...|+..+|...++..+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3457888888888899999998888888775421111 334444556667788888888888888876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.87 Score=40.20 Aligned_cols=118 Identities=14% Similarity=0.005 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHHHHHH
Q 006630 471 EACEYFKEMVGRGLLSAPQYGTLKA--LLNSLLRAQKVEMAKDVWSCIVTKGCELN--VYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 471 ~A~~~~~~m~~~~~~~~p~~~~~~~--ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~ 546 (638)
+.....+.+..... ...+.++.. +...+..+|++++|...++..+.....-+ ...--.|.......|.+++|+.
T Consensus 70 ~~~~~~ekf~~~n~--~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANG--KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhcc--ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444555555431 233333333 34557788888888888887775411111 1122234567778899999988
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.++.....+. .+.....-.+++...|+.++|+..|+++++.+++
T Consensus 148 ~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 148 TLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 8876553321 2333445567788889999999999999888643
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.46 E-value=4 Score=37.58 Aligned_cols=86 Identities=17% Similarity=0.072 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGH 540 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 540 (638)
+...++.++++..+........ . ....+..+...+...++++.|...+...... .|+ ...+..+...+...|.
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 251 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNP---DDDAEALLNLGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGR 251 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCc---ccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCC
Confidence 4444555555555555544431 2 2334444444555555555555555555543 222 2333333333334455
Q ss_pred HHHHHHHHHHHHh
Q 006630 541 VKEACSYCLDMMD 553 (638)
Q Consensus 541 ~~~A~~~~~~m~~ 553 (638)
.+++...+.+...
T Consensus 252 ~~~~~~~~~~~~~ 264 (291)
T COG0457 252 YEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555554
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.1 Score=31.56 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 562 TFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 562 t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
+|..+...+...|++++|...++++++++|++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57778888889999999999999999999853
|
... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.89 Score=40.16 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhh
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMPQ-----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRG 604 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g 604 (638)
-+..+|++++|..-|..+++.- .|. ++.|..-..+..+++.++.|+.-..++++++|.+..++ ..|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3556677777777776666531 111 23344555566667777777777777777777655554 4666777
Q ss_pred hhhhHHHHHhhhhhhhhhh
Q 006630 605 ERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 605 ~~~~A~~~~~~~~~~~~~~ 623 (638)
++++|.+-|+++.+..++.
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 7777777777766555443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.32 E-value=8.6 Score=40.88 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHH
Q 006630 277 DIVVYNNLLSGYAQMGKMTDAFELL 301 (638)
Q Consensus 277 ~~~~~~~ll~~~~~~g~~~~a~~~~ 301 (638)
|....-.+..++.+.|.-++|.+.|
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHH
Confidence 3444455555556666655555544
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.14 Score=33.38 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
++..+...|...|++++|+++|+++.+..|.|...|..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 344555555555666666666665555555555555444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.41 Score=44.57 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 398 (638)
+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3466777777777777777777777777766554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.10 E-value=5 Score=37.35 Aligned_cols=48 Identities=8% Similarity=0.137 Sum_probs=25.9
Q ss_pred CHhHHHHHHHHHHHcCCCCCHHh---HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 293 KMTDAFELLKEMRRKGCDPNANS---YTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 293 ~~~~a~~~~~~~~~~g~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
.+++|+.-|++..+....-...- ...+|..+.+.|++++....+.++.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 56666666666655422222222 2334555666666666666666654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.09 E-value=4.7 Score=37.05 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=25.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH---HHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEM---EAASLSPGTDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m---~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (638)
|-..|-.|.-..++..|.+.++.- ....-+.+..+...|+.+|- .|+.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~ 247 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIK 247 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHH
Confidence 333444455556666666666652 22222334455556665553 34444443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.48 Score=44.11 Aligned_cols=127 Identities=19% Similarity=0.192 Sum_probs=80.8
Q ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006630 229 AKLFDEMRERFKPSLRHFTSLLYGWCKE-----GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303 (638)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 303 (638)
...|....- ..-|-.+|...+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+-.
T Consensus 54 e~~F~aa~~-~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------- 121 (406)
T KOG3941|consen 54 EKQFEAAEP-EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------- 121 (406)
T ss_pred hhhhhccCc-ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-----------
Confidence 444555541 123777788777777543 556777777888888888888888888877653321
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHH
Q 006630 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKID-RCYEILDSMI 375 (638)
Q Consensus 304 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~m~ 375 (638)
+.|... +..+.-.|- .+-+-+++++++|...|+.||-.+-..|++++.+.+..- +...++-.|.
T Consensus 122 -----fiP~nv-fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 122 -----FIPQNV-FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred -----cccHHH-HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 222211 111111222 223457889999999999999999999999998877643 3333333443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.61 Score=44.31 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-----AGFEPDIVVYNNL 284 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 284 (638)
.++..++..+..+|+++.+.+.++++....|-+...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45677888888899999999999998888888999999999999999999999999888765 5777777766655
Q ss_pred HHH
Q 006630 285 LSG 287 (638)
Q Consensus 285 l~~ 287 (638)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.79 E-value=4 Score=35.38 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=22.9
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (638)
+..+|.+++.....+-+...+ .|- ...-..|.-+-.+.|++..|+..+..+..
T Consensus 142 LvD~gsy~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 142 LVDNGSYDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccccHHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555555444443332222 111 12223344444455555555555554443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.75 E-value=9.2 Score=39.19 Aligned_cols=172 Identities=6% Similarity=-0.025 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.|....-+++..+.......-.+.+..+|...| .+-..|..++..|..+ ..++-..+++++.+..+ +......
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df----nDvv~~R 136 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF----NDVVIGR 136 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc----hhHHHHH
Confidence 344444555555555555555555555665543 3444555566666555 34455555665555542 2222223
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCEL--N---VYAWTIWIHSLFSNGHVKEACSYCLDMMD-ADVMPQPDTFAKLMRG 569 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p--~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~t~~~ll~~ 569 (638)
-+..+...++.+.+..+|.++...-++. + ...|.-+...- -.+.+..+.+..+..+ .|..--.+.+.-+..-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3333333355555666665555431110 1 12343333211 2344555555555543 3434445555666666
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|....|+.+|.++...+++.+..+..+
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcchhhhH
Confidence 666777777777777777776665444
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.56 E-value=8.2 Score=42.15 Aligned_cols=66 Identities=15% Similarity=0.190 Sum_probs=36.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHhchhCCCCCCHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM-------VKKAIEVLDEMPKYGCEPDEF 210 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-------~~~A~~~~~~m~~~g~~~~~~ 210 (638)
++|--+.|+|.+++|.++..+....... ....|...+..|....+ -++...-|+...+.....|++
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~--~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQK--IERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-T--TTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcc--hhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 4566677999999998888555544322 33456667777765422 234555566555443322553
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.50 E-value=3.7 Score=33.82 Aligned_cols=61 Identities=13% Similarity=0.095 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006630 457 VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520 (638)
Q Consensus 457 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 520 (638)
..-+..+..+|+-++--+++.++...+ .+++..+..+.++|.+.|+..++.+++.++-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 333445555555555555555555433 3555555555566666666666666655555544
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.02 E-value=4.4 Score=33.37 Aligned_cols=63 Identities=25% Similarity=0.289 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 309 (638)
....+....+.|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3444445555555555555555554322 44555555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.96 E-value=20 Score=40.83 Aligned_cols=133 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 425 IRLACKLGELKEAVNVWNEMEAASLSPGTDS----FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
++.--+.|.+++|+.++ .|+... |.+....+.....+++|.-.|+.. | . ....+.+|
T Consensus 915 ~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~---G----k----lekAl~a~ 975 (1265)
T KOG1920|consen 915 KNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERC---G----K----LEKALKAY 975 (1265)
T ss_pred HHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHh---c----c----HHHHHHHH
Confidence 33344555555555554 344443 444445555667777777666543 1 1 12356777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVY--AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
..+|++.+|..+..++.. ..+.. +-..|+.-+...+++-+|-++..+.... |. ..+..+++...+++
T Consensus 976 ~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~-----~av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE-----EAVALLCKAKEWEE 1044 (1265)
T ss_pred HHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH-----HHHHHHhhHhHHHH
Confidence 888888888888776642 11222 2256777788888888888887776532 21 12233445556777
Q ss_pred HHHHHHHHH
Q 006630 579 AAEITEKVR 587 (638)
Q Consensus 579 A~~~~~~~~ 587 (638)
|.....+.-
T Consensus 1045 Alrva~~~~ 1053 (1265)
T KOG1920|consen 1045 ALRVASKAK 1053 (1265)
T ss_pred HHHHHHhcc
Confidence 776665554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.81 E-value=5.6 Score=34.24 Aligned_cols=51 Identities=14% Similarity=0.026 Sum_probs=23.7
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
+.++.+++..+++.+.---|.....-..-...+.+.|++.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555555432222222222233334455555555555555544
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.33 Score=46.41 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=68.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGER 606 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~ 606 (638)
..-|.++|+++||+..|.+.+. +.| |++++..-..+|.+...+..|+.-.+.++.++-....+| ..-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3468999999999999988764 467 899999999999999999999999999999887655554 244566888
Q ss_pred hhHHHHHhhhhhh
Q 006630 607 DLKEKAKKQVDGR 619 (638)
Q Consensus 607 ~~A~~~~~~~~~~ 619 (638)
.||.+-++.+-+.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 8888777664433
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.16 E-value=0.66 Score=43.93 Aligned_cols=103 Identities=22% Similarity=0.256 Sum_probs=76.3
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC
Q 006630 132 PNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKP----QLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP 207 (638)
Q Consensus 132 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~ 207 (638)
.|.+++..+-..++.+-....+++++...+-.++.... ..++..+|..++. .-++++++.++..=+..|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 35566666667777777777888888888877764321 1134334333332 346779999999988999999
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc
Q 006630 208 DEFVFGCLLDALCKNSSVKEAAKLFDEMRER 238 (638)
Q Consensus 208 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 238 (638)
|.++++.+|+.+.+.+++.+|..+.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999888776543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.10 E-value=16 Score=37.59 Aligned_cols=57 Identities=11% Similarity=0.149 Sum_probs=25.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEME 445 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 445 (638)
+..++-+.|+.++|.+.+.++.+.... .+..+...|+.++...+.+.++..++.+-.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 333444445555555555554432111 122344445555555555555555555443
|
The molecular function of this protein is uncertain. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.47 Score=32.26 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=26.1
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.+.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999987664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=13 Score=35.93 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=75.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG-CLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
++..+-...+.++.+.++ ++|...+-.+.+. +|...-...+.++.+.+ ...++...+..+.. .++..+-.
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-----D~~~~VR~ 210 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-----DKNEEIRI 210 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-----CCChHHHH
Confidence 355555555666666665 4455555555542 33334444444454432 23455555555553 24555556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLK 571 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 571 (638)
..+.++.+.|+ ..|...+-...+.+ + .....+.++...|.. +|+..+..+.+. .||..+-...+.+|.
T Consensus 211 ~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 211 EAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 66677777776 34555555555432 2 233566777777774 577777777653 456655555555443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.65 E-value=29 Score=39.67 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=24.2
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHH
Q 006630 233 DEMRERFKPSLRHFTSLLYGWCKEG--KLVEAKYVLVQMKD 271 (638)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~ 271 (638)
.....+..|+ .....+|..|++.+ .+++|+....+...
T Consensus 781 r~~l~~~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 781 RNALERRAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHhhcCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 3333345555 44556777888877 67777777777664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.63 E-value=23 Score=38.33 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=53.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL 573 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 573 (638)
+-.+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-.++-+.+. .++-|.-...+|.+.
T Consensus 688 ~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 688 HDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQ 757 (829)
T ss_pred HHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhc
Confidence 333444555566666655544432 3455555555566666666665444433221 133444555666666
Q ss_pred cCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHH
Q 006630 574 YNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEK 611 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~ 611 (638)
|+.++|.++.-++-.+. +...+|.+.|++.+|.+
T Consensus 758 ~n~~EA~KYiprv~~l~----ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGLQ----EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred ccHHHHhhhhhccCChH----HHHHHHHHhccHHHHHH
Confidence 66666666555443322 34455666666666554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.53 E-value=2.3 Score=40.50 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
.++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++
T Consensus 158 ~lae~~~~~~~~~~~~~~l~~Li~~d---p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 158 KLAEALIACGRADAVIEHLERLIELD---PYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 33334444444444444444444433 233334444444444444444444444433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.52 E-value=3.7 Score=33.93 Aligned_cols=93 Identities=10% Similarity=0.109 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 522 ELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.+...+--.+.+++.+..+ .++.+.++++..+. -.|+ -.-..-|.-++.+.++|+.++++.+.+++.+|+|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~-~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n--- 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS-AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN--- 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh-cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc---
Confidence 4455565567778877654 56778888888762 2343 2233345557889999999999999999999874
Q ss_pred cchhhhhhhhhhHHHHHhhhhhhhhhhhhhhc
Q 006630 597 FKMYKRRGERDLKEKAKKQVDGRKRRARQRRW 628 (638)
Q Consensus 597 ~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 628 (638)
.+|.++.+.++++..|..-.+.
T Consensus 105 ----------~Qa~~Lk~~ied~itkegliGm 126 (149)
T KOG3364|consen 105 ----------RQALELKETIEDKITKEGLIGM 126 (149)
T ss_pred ----------HHHHHHHHHHHHHHhhcceeee
Confidence 5577777778777777665553
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.49 E-value=24 Score=38.35 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=60.6
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEP---DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
++-+.+.+.+++|+.+-+..... .+ -..++...|+.+.-.|++++|-...-.|... +..-|.--+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhcccc
Confidence 33445567777777776654332 33 2345667777777778888887777777644 6666777676666666
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
+......+ +.......+...|..++-.+..
T Consensus 438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 65443322 2221112355667766666655
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.24 E-value=15 Score=35.72 Aligned_cols=127 Identities=11% Similarity=0.198 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCC---
Q 006630 331 EANRAFVEMERSGCEADVVTYTTLISGFCK--S----RKIDRCYEILDSMIQRGI---LPNQLTYLHIMLAHEKKEE--- 398 (638)
Q Consensus 331 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~m~~~~~---~p~~~t~~~ll~~~~~~g~--- 398 (638)
+...+++.|.+.|+..+..+|-+....... . ....+|..+++.|.+..+ .++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344555666666666555554442221111 1 123456666666666532 2233444444332 1222
Q ss_pred -HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 399 -LEECVELMGEMRKIGCVPDVS--NYNVVIRLACKLGE--LKEAVNVWNEMEAASLSPGTDSFVVM 459 (638)
Q Consensus 399 -~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (638)
.+....+|+.+.+.|+..+.. ....++........ ..++..+++.+.+.|+++....|..+
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 233444555555544443321 22222221111111 23455555666666555555444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.23 E-value=15 Score=35.56 Aligned_cols=165 Identities=12% Similarity=0.054 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 419 SNYNVVIRLACKLGELK---EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.++..++.+|...+..+ +|..+++.+.... +-....+..-+..+.+.++.+++.+.+.+|+..-.. ....+..
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~---~e~~~~~ 160 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH---SESNFDS 160 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc---ccchHHH
Confidence 34555666666666544 3444555553331 112334444455555567777777777777765321 2223333
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH---HHccCC------HHHHHHHHHHHHh-CCCCCCH
Q 006630 496 LLNSL---LRAQKVEMAKDVWSCIVTKGCELNVYAW--TIWIHS---LFSNGH------VKEACSYCLDMMD-ADVMPQP 560 (638)
Q Consensus 496 ll~~~---~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~---~~~~g~------~~~A~~~~~~m~~-~~~~p~~ 560 (638)
++..+ .. .....|...++.++...+.|....| ..++.. ..+.++ .+....++....+ .+.+.+.
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 33333 32 2234455555555444333333211 111111 111111 3333344443222 1112222
Q ss_pred HH---HHHH----HHHHHhhcCHHHHHHHHHHHHH
Q 006630 561 DT---FAKL----MRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 561 ~t---~~~l----l~~~~~~g~~~~A~~~~~~~~~ 588 (638)
.+ ..++ +..+.+.++|+.|.+.++.++.
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 22 2222 2345567899999999887653
|
It is also involved in sporulation []. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.00 E-value=12 Score=33.92 Aligned_cols=166 Identities=10% Similarity=-0.017 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.-+.+||.|.-.+...|+++.|.+.|+...+.+..-+-...|.-| ++---|+++-|.+-|.+.-+.+.. .|-...|.-
T Consensus 97 ~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~-DPfR~LWLY 174 (297)
T COG4785 97 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPN-DPFRSLWLY 174 (297)
T ss_pred CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCC-ChHHHHHHH
Confidence 345778888888889999999999999998876222222222222 233468899998888888777632 343333333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-------PDTFAKLMR 568 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------~~t~~~ll~ 568 (638)
+. -..-++.+|..-+.+--+ ..|..-|...|-.|.--.-.+++ +++++... -..+ ..||--+.+
T Consensus 175 l~---E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~--l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 175 LN---EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEET--LMERLKAD-ATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred HH---HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHH--HHHHHHhh-ccchHHHHHHHHHHHHHHHH
Confidence 32 233455666554433222 23555665544433322222222 33344321 1211 356777888
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
-+...|+.++|..+++-++..+--
T Consensus 246 ~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHhccccHHHHHHHHHHHHHHhHH
Confidence 888889999999999888776543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.44 E-value=11 Score=32.75 Aligned_cols=137 Identities=18% Similarity=0.115 Sum_probs=81.9
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHH-HHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEF-VFGC 214 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~-~~~~ 214 (638)
.+...|..-++ +++.+..++|+.-|..+.+.+-.....-....+.......|+-..|+..|+++-...-.|-.. -..-
T Consensus 57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 34455555444 456677888999998888765332222222333444567788888888888876553333322 1111
Q ss_pred H--HHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006630 215 L--LDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAG 273 (638)
Q Consensus 215 l--i~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 273 (638)
| .-.+...|.+++.....+.+.. +.+--...-..|.-+-.+.|++..|.+.|..+....
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 2 2234567777777776666542 223334445566667777888888888888776543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.61 Score=28.69 Aligned_cols=26 Identities=15% Similarity=0.105 Sum_probs=20.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888899999998888854
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.25 E-value=0.34 Score=29.40 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=18.1
Q ss_pred HHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 233 DEMRERFKPSLRHFTSLLYGWCKEGKLVEAK 263 (638)
Q Consensus 233 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 263 (638)
++..+..|.|..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3334444556666666666666666666654
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.09 E-value=4.6 Score=35.92 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 006630 244 RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI--VVYNNLLSGYAQMGKMTDAFELLKEMRR 306 (638)
Q Consensus 244 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 306 (638)
..+..+...|++.|+.++|++.|.++.+....+.. ..+-.+|+.....+++..+...+.+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566667777777777777777776665433322 3445566666667777776666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.64 E-value=12 Score=31.80 Aligned_cols=51 Identities=14% Similarity=0.032 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
.++.+++..+++.|.---|.....-..-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 456666666666554432222222222233345566666666666666554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=89.42 E-value=0.62 Score=27.66 Aligned_cols=29 Identities=24% Similarity=0.170 Sum_probs=20.6
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
..+..++.+.|++++|.+.++++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34556666777777777777777777775
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.40 E-value=14 Score=32.30 Aligned_cols=133 Identities=13% Similarity=0.161 Sum_probs=61.1
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.++.+.+.+++|+...|..++..+.+.|++..- .+++..++. +|.......+ +...+.+..+.++--.|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi--~DSk~lA~~L--Ls~~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVI--PDSKPLACQL--LSLGNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhccc--CCcHHHHHHH--HHhHccChHHHHHHHHHHHH
Confidence 334444555666666666666666666654433 233444432 3333332222 11222223333333333322
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRK 588 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~ 588 (638)
=...+..+++.+...|++-+|+++.+.... -+...-..++.+..+.+|...=-.+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 011344556667777777777777655321 1112223455555555555544444443333
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.35 E-value=27 Score=35.57 Aligned_cols=118 Identities=7% Similarity=0.014 Sum_probs=57.9
Q ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 006630 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELL 301 (638)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 301 (638)
.|++-.|-+-+.....+.+.+++........+...|+++.+...+...... +.....+...+++...+.|+++.|..+-
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 455554443333333333333333333334455566666666665544322 1223345556666666666666666666
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 302 KEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 302 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+-|....++ +..+........-..|-++++...+.++..
T Consensus 381 ~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 381 EMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 666655444 222222222222334555666666665543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.30 E-value=2 Score=37.59 Aligned_cols=59 Identities=15% Similarity=0.065 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCC-----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGH-----------VKEACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
+|+.-|++++.. .|+ ..++.++..+|...+. +++|...|++..+. +|+..+|..-+..+
T Consensus 53 dAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 53 DAISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 333334444432 444 3455566655544322 34444455554433 56666666555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.26 E-value=36 Score=36.80 Aligned_cols=208 Identities=14% Similarity=0.098 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACK-LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL--GQGCLIEACE 474 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~A~~ 474 (638)
+.+.|..++....+.| .|+....-..+..... ..+...|.+.|......| .+...-+.+++-... ..-+...|..
T Consensus 308 d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G-~~~A~~~la~~y~~G~gv~r~~~~A~~ 385 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG-HILAIYRLALCYELGLGVERNLELAFA 385 (552)
T ss_pred cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhCCCcCCCHHHHHH
Confidence 4555666666666655 3443333222222111 234567777777777666 222222222221111 2345677777
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HH---HHc----cCCHHHHHH
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI-HS---LFS----NGHVKEACS 546 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li-~~---~~~----~g~~~~A~~ 546 (638)
++++..+.|. |...-....+..+.. +.++.+.-.+..+...|.+ ...+-..++ .. ... ..+...+..
T Consensus 386 ~~k~aA~~g~---~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 386 YYKKAAEKGN---PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHccC---hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHH
Confidence 7777777762 332222233333334 5666665555555554322 111111111 10 111 224556666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhh----cCHHHHHHHHHHHHHHHHhcccccc---hh----hhhhhhhhHHHHHhh
Q 006630 547 YCLDMMDADVMPQPDTFAKLMRGLKKL----YNRQIAAEITEKVRKMAAERQITFK---MY----KRRGERDLKEKAKKQ 615 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~---~y----~~~g~~~~A~~~~~~ 615 (638)
++.+....| +......+.+.|..- .+++.|...+.++-... ....++ ++ .-.. +..|.+.+++
T Consensus 461 ~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~ 534 (552)
T KOG1550|consen 461 LYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKV-LHLAKRYYDQ 534 (552)
T ss_pred HHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcch-hHHHHHHHHH
Confidence 666655443 344445555554432 36788888888777766 222222 22 2223 6777777776
Q ss_pred hhh
Q 006630 616 VDG 618 (638)
Q Consensus 616 ~~~ 618 (638)
..+
T Consensus 535 ~~~ 537 (552)
T KOG1550|consen 535 ASE 537 (552)
T ss_pred HHh
Confidence 544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.84 E-value=19 Score=33.10 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=12.2
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006630 358 FCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~ 375 (638)
+.-.+++++|.++|.+.-
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 444567888888877643
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.74 E-value=25 Score=34.32 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
.+.++++.+.+.|+++....|..+
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHcCCccccccccHH
Confidence 444455555555555444444433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.09 E-value=11 Score=39.35 Aligned_cols=130 Identities=19% Similarity=0.190 Sum_probs=72.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 178 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
+.++..+-+.|..++|+++-. .||.. .....+.|+++.|.++..+.. +..-|..|.++....|
T Consensus 618 t~va~Fle~~g~~e~AL~~s~-------D~d~r-----Felal~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELST-------DPDQR-----FELALKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhHHhHhhhccchHhhhhcCC-------Chhhh-----hhhhhhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcc
Confidence 345555556666666654421 12211 223345677777766655543 4556777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFV 337 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 337 (638)
++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |.-.-+|...|+++++.+++.
T Consensus 681 ~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 681 ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 77777777766543 345555566666665555555555544432 222334556677777666665
Q ss_pred HH
Q 006630 338 EM 339 (638)
Q Consensus 338 ~m 339 (638)
.-
T Consensus 746 ~t 747 (794)
T KOG0276|consen 746 ST 747 (794)
T ss_pred hc
Confidence 43
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=88.03 E-value=4.8 Score=35.80 Aligned_cols=63 Identities=6% Similarity=-0.048 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
.+..+...|++.|+.++|++.|.++.+....+..-...+..++..+.-.+++..+.....++.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 455555555566666666666655555432111112233444444555555555555544443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=86.90 E-value=20 Score=31.30 Aligned_cols=133 Identities=8% Similarity=0.092 Sum_probs=69.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 264 YVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 264 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
+.++.+.+.+++|+...+..+++.+.+.|.+....++ ...++-+|.......+-.+. +....+.++=-+|..+
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH-
Confidence 4455566677788888888888888888776554443 33444455544433332222 2222333333333321
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 344 CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 344 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
=...+..++..+...|++-+|+++.+...... ......++.+..+.++...-..+++...
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 01134556666777788888887776643221 1112334555555555544444444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.52 E-value=20 Score=30.91 Aligned_cols=62 Identities=18% Similarity=0.259 Sum_probs=34.1
Q ss_pred HHHHHHHHH---HhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC
Q 006630 140 VYRALIKSL---SKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203 (638)
Q Consensus 140 ~~~~li~~~---~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 203 (638)
+.+.||..+ .+.++.+++..+++.+....|..+...++...+ ++..|++.+|+.+|+.+...
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc
Confidence 334444443 245666666666666666666544444443333 34566666666666665443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.31 E-value=18 Score=37.92 Aligned_cols=132 Identities=18% Similarity=0.145 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.-+.+++.+.+.|-.++|+++- ++ ++ .-| ....+.|+++.|.++..+. .+..-|..|.++.
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s-------~D-~d-~rF----elal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS-------TD-PD-QRF----ELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAA 676 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC-------CC-hh-hhh----hhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHH
Confidence 4556667777777777666542 11 11 222 2334689999998887653 4667899999999
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFE 299 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 299 (638)
.+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|...-+|...|+++++.+
T Consensus 677 l~~~~l~lA~EC~~~a~d--------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~ 742 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD--------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLE 742 (794)
T ss_pred hhcccchhHHHHHHhhcc--------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHH
Confidence 999999999999987653 67788888888988877777777776662 2344456778899999998
Q ss_pred HHHHH
Q 006630 300 LLKEM 304 (638)
Q Consensus 300 ~~~~~ 304 (638)
++..-
T Consensus 743 lLi~t 747 (794)
T KOG0276|consen 743 LLIST 747 (794)
T ss_pred HHHhc
Confidence 87654
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=86.01 E-value=38 Score=33.57 Aligned_cols=123 Identities=12% Similarity=0.102 Sum_probs=59.0
Q ss_pred HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc---cCCHHHHHHH
Q 006630 471 EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS---NGHVKEACSY 547 (638)
Q Consensus 471 ~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~ 547 (638)
.-+.+++++++.+ +.+...+..++..+.+..+.+...+-|++++.... -+...|...++.... .-.+.+....
T Consensus 49 ~klsilerAL~~n---p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~-~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 49 RKLSILERALKHN---PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP-GSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 3444555555543 23444444555555555555555555555555411 134445544443322 1123344444
Q ss_pred HHHHHh------CCC------CCC--H---HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 548 CLDMMD------ADV------MPQ--P---DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 548 ~~~m~~------~~~------~p~--~---~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
|.+.++ .+. .|+ . .++..+...+...|-.+.|..+++-+++++--.|..+
T Consensus 125 y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~~ 191 (321)
T PF08424_consen 125 YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPESL 191 (321)
T ss_pred HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcccc
Confidence 333321 010 011 1 1233333344566888888888888888876555543
|
|
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=85.92 E-value=42 Score=33.94 Aligned_cols=182 Identities=12% Similarity=0.134 Sum_probs=108.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHcCC
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL-GQGCLIEACEYFKEMVGRGLLSAPQ----YGTLKALLNSLLRAQK 505 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~~ll~~~~~~g~ 505 (638)
.|+.++|.+.+..+.....++....|..|+.+-. ...++.+|+++|+...-.- |. ...+.--+-.....|+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla----PGTLvEEAALRRsi~la~~~g~ 200 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLA----PGTLVEEAALRRSLFIAAQLGD 200 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC----CchHHHHHHHHHhhHHHHhcCc
Confidence 6888888888888877766777777877776644 3567888888888776542 33 2223333344567788
Q ss_pred HHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVY---AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~ 580 (638)
.+++..+-.+...+ +..++. .+..+..++.+.++-..- ..+..++.. +.|+ ...|..+...-...|+.+.|.
T Consensus 201 ~~rf~~la~~Y~rR-F~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~ 277 (421)
T PRK12798 201 ADKFEALARNYLRR-FRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSF-MDPERQRELYLRIARAALIDGKTELAR 277 (421)
T ss_pred HHHHHHHHHHHHHH-hccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHH
Confidence 88777666655544 222222 223334444444422211 123444432 1333 456888888778889999999
Q ss_pred HHHHHHHHHHHhcccc---cchhhh-----hhhhhhHHHHHhhhhhh
Q 006630 581 EITEKVRKMAAERQIT---FKMYKR-----RGERDLKEKAKKQVDGR 619 (638)
Q Consensus 581 ~~~~~~~~~~p~~~~~---~~~y~~-----~g~~~~A~~~~~~~~~~ 619 (638)
...+++..+..+.... ..+|.. ..+.+++.+....+...
T Consensus 278 ~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~ 324 (421)
T PRK12798 278 FASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRD 324 (421)
T ss_pred HHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChh
Confidence 9999999887443322 234432 24466666665555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.79 E-value=7.9 Score=37.03 Aligned_cols=103 Identities=19% Similarity=0.233 Sum_probs=65.1
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG---CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (638)
|......+...++..-....+++.+...+-++...- ..|+.. -.+.++. +-.-++++++.++..=++.|+.||.+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHH-HHccChHHHHHHHhCcchhccccchh
Confidence 444455555666666666677777777777765431 011111 1122222 22345667887777777778888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKI 412 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 412 (638)
++..+|+.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888777766554
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.54 E-value=0.11 Score=44.51 Aligned_cols=111 Identities=12% Similarity=0.085 Sum_probs=76.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++. .+......++..|.+.|-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4566677788888888888888765555688889999999999887888777652 122344567788888888
Q ss_pred HHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhhhh
Q 006630 576 RQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~~~ 617 (638)
++.|.-++.+ ......+++++...+++++|.+...+..
T Consensus 86 ~~~a~~Ly~~----~~~~~~al~i~~~~~~~~~a~e~~~~~~ 123 (143)
T PF00637_consen 86 YEEAVYLYSK----LGNHDEALEILHKLKDYEEAIEYAKKVD 123 (143)
T ss_dssp HHHHHHHHHC----CTTHTTCSSTSSSTHCSCCCTTTGGGCS
T ss_pred HHHHHHHHHH----cccHHHHHHHHHHHccHHHHHHHHHhcC
Confidence 8888887765 2233344555666677777776555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.53 E-value=2.5 Score=25.25 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 169 (638)
.+|..+...|...|++++|+..|++..+.+|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3566677777777777777777777766654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.50 E-value=34 Score=32.59 Aligned_cols=60 Identities=15% Similarity=0.057 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
.++.....|..+|.+.+|.++.+..+..+ +.+...+..+++.+...|+--.+.+-++.+.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld---pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD---PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC---hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445556666777777777777666665 3455566666666777777655655555553
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=85.49 E-value=48 Score=34.29 Aligned_cols=166 Identities=9% Similarity=0.009 Sum_probs=75.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 382 NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461 (638)
Q Consensus 382 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (638)
|.....+++..+..+....-...+..+|...| .+...|..++.+|... ..++-..+|+++.+.+ -.|++.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence 44444455555555555555555555555432 3444555555555555 4455555555555543 123333333333
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHc
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQ---YGTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELNVYAWTIWIHSLFS 537 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~ 537 (638)
-|.+ ++.+.+..+|..+...-+....+ ...|..+... -..+.+.-..+...+.+. |...-.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 55555555555555443310001 1122222110 123444444444444333 333334444444455556
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006630 538 NGHVKEACSYCLDMMDA 554 (638)
Q Consensus 538 ~g~~~~A~~~~~~m~~~ 554 (638)
..++.+|++++..+++.
T Consensus 218 ~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 218 NENWTEAIRILKHILEH 234 (711)
T ss_pred ccCHHHHHHHHHHHhhh
Confidence 66666666666655543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.63 E-value=2.6 Score=26.55 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
.+++.+...|...|++++|+.+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45677777777778888888777777764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.60 E-value=29 Score=31.00 Aligned_cols=89 Identities=18% Similarity=0.172 Sum_probs=60.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA-----LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~-----ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 534 (638)
...+...|++++|..-++..+.. |....+.. |.......|.+|+|...++.....+. .......-.++
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~-----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDi 168 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQ-----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDI 168 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHcc-----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhH
Confidence 45577788888888888877654 22233333 34556678888888888877654322 12223334578
Q ss_pred HHccCCHHHHHHHHHHHHhCC
Q 006630 535 LFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~ 555 (638)
+...|+.++|..-|++.+..+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888999999999998888764
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=84.52 E-value=3 Score=24.82 Aligned_cols=31 Identities=10% Similarity=0.215 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKP 169 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 169 (638)
..|..+...|.+.|++++|++.|++.....|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 3466677777777888888888777776654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=84.22 E-value=42 Score=32.49 Aligned_cols=80 Identities=8% Similarity=-0.082 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHH
Q 006630 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL----VEAKYVLVQMKDAGFEPDIVVYN 282 (638)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~~~~ 282 (638)
+|..+....+..+...|..+ +...+..+.. .+|...-...+.++.+.|+. .++...+..+... .++...-.
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~-~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~ 109 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQD-VFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRA 109 (280)
T ss_pred CCHHHHHHHHHHHHhcCcch-HHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHH
Confidence 44444444455555444322 2222222221 12444444555555555542 3455555554322 34444444
Q ss_pred HHHHHHHHc
Q 006630 283 NLLSGYAQM 291 (638)
Q Consensus 283 ~ll~~~~~~ 291 (638)
..+.++...
T Consensus 110 ~A~~aLG~~ 118 (280)
T PRK09687 110 SAINATGHR 118 (280)
T ss_pred HHHHHHhcc
Confidence 444444443
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.92 E-value=1.3e+02 Score=37.79 Aligned_cols=115 Identities=10% Similarity=0.063 Sum_probs=57.5
Q ss_pred HHhcCCHHHHHHHHHhchhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 184 FASARMVKKAIEVLDEMPKYGC--EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261 (638)
Q Consensus 184 ~~~~~~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (638)
-.+.+.+..|+..++.-..... ......|-.+...|...+++|....+...-.. .|+ ...-|-.....|++..
T Consensus 1393 Sfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a--~~s---l~~qil~~e~~g~~~d 1467 (2382)
T KOG0890|consen 1393 SFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA--DPS---LYQQILEHEASGNWAD 1467 (2382)
T ss_pred HHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc--Ccc---HHHHHHHHHhhccHHH
Confidence 3345566666666665211100 11223333444466666666666555442110 111 2233444555677777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 262 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
|...|+.+...+ ++...+++-++......|.+....-..+-.
T Consensus 1468 a~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1468 AAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred HHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence 777777776553 233556666666555666666555544433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.80 E-value=3.7 Score=42.54 Aligned_cols=94 Identities=15% Similarity=0.041 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAE 581 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 581 (638)
-.|+...|...+..+......-.-+....|...+.+.|...+|-.++.+.+... ...+.++..+.+++....|.++|.+
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 468888888888777654222233445566777778888888998888877644 5567788889999999999999999
Q ss_pred HHHHHHHHHHhcccc
Q 006630 582 ITEKVRKMAAERQIT 596 (638)
Q Consensus 582 ~~~~~~~~~p~~~~~ 596 (638)
.++.+++++|+++..
T Consensus 698 ~~~~a~~~~~~~~~~ 712 (886)
T KOG4507|consen 698 AFRQALKLTTKCPEC 712 (886)
T ss_pred HHHHHHhcCCCChhh
Confidence 999999999998875
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.5 Score=25.17 Aligned_cols=30 Identities=23% Similarity=0.151 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 563 FAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 563 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
|..+...+...|+++.|...++++++..|+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 445555556666666666666666665543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.70 E-value=8.9 Score=34.42 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhhcCHHHH
Q 006630 539 GHVKEACSYCLDMMD---ADVMPQPDTFAKLMRGLKKLYNRQIA 579 (638)
Q Consensus 539 g~~~~A~~~~~~m~~---~~~~p~~~t~~~ll~~~~~~g~~~~A 579 (638)
-+.++|+.++.+.++ .+-.+|+..+.+|...+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344445554444443 11134455555555555555555444
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=83.55 E-value=76 Score=34.95 Aligned_cols=272 Identities=9% Similarity=-0.001 Sum_probs=141.4
Q ss_pred HHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 006630 123 RYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202 (638)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 202 (638)
.+..|....++.+.....-...+..+.+.+++.+.++++. ..| .+...-.....+....|+.++|......+-.
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~----~~p--~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~ 157 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSP----EKP--KPVEARCNYYYAKWATGQQQEAWQGAKELWL 157 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcC----CCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4444555555555555555556667777788877766331 112 3555556677788888888888877777766
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHH
Q 006630 203 YGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER-FKPSLRHFTSLLYGWCK------------EGKLVEAKYVLVQM 269 (638)
Q Consensus 203 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~m 269 (638)
.| ...+..++.+++.+.+.|.+.... +..+|... ...+...-..+...+.. ..+...+..++.
T Consensus 158 ~g-~~~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-- 233 (644)
T PRK11619 158 TG-KSLPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-- 233 (644)
T ss_pred cC-CCCChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh--
Confidence 65 445667888888887766554322 22222110 01122222222221100 011111111111
Q ss_pred HHCCCCCCHHHHHHHHHHHH--HcCCHhHHHHHHHHHHHc-CCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006630 270 KDAGFEPDIVVYNNLLSGYA--QMGKMTDAFELLKEMRRK-GCDPNA--NSYTVLIQALCRMEKMEEANRAFVEMERSGC 344 (638)
Q Consensus 270 ~~~g~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~-g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 344 (638)
.+.|+...-..++-++. ...+.+.|..++...... ++.+.. .++..+.......+..++|...++......
T Consensus 234 ---~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~- 309 (644)
T PRK11619 234 ---TTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS- 309 (644)
T ss_pred ---ccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-
Confidence 11223222221222222 234667888888876443 222221 223333333333322556666666654332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 345 EADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 345 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
.|......-+......++++.+...+..|....- -...-.--+..++...|+.++|..+|+.+.
T Consensus 310 -~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~-~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 310 -QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred -CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhc-cCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 2333344444455578888888888887755322 244455566777677888888888887764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.37 E-value=35 Score=31.01 Aligned_cols=64 Identities=17% Similarity=0.022 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
+.+||.|.--+...|+++.|.+.|+...+-.|....+...-.-.+.-.|++.-|.+=|.+.-+.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~ 162 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD 162 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc
Confidence 3567777777777777777777777776654444333322222333456777776666555544
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.34 E-value=10 Score=29.35 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLI 320 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 320 (638)
-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+ +..+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 355666666666777888888888888888888888888888876643 222334555554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.70 E-value=7.8 Score=30.30 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+ +.+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence 45555666666677788888888888888888888888888877654 2222335665553
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.47 E-value=7.5 Score=30.39 Aligned_cols=60 Identities=12% Similarity=0.217 Sum_probs=36.8
Q ss_pred HHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 192 KAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 192 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 444555555566667888888888888888888888888888777654444335555443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.28 E-value=55 Score=32.45 Aligned_cols=121 Identities=9% Similarity=0.076 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH---cCCHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR---AQKVEMAKD 511 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~---~g~~~~A~~ 511 (638)
+.-+.++++..+.+ +.+...+..++..+.+....++..+.+++++... +-+...|...|+.... .-.++....
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~---~~~~~LW~~yL~~~q~~~~~f~v~~~~~ 123 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN---PGSPELWREYLDFRQSNFASFTVSDVRD 123 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCChHHHHHHHHHHHHHhccCcHHHHHH
Confidence 34445555555553 3444555556666666666666666666666654 2344555555554443 223455555
Q ss_pred HHHHHHHc------CC------CCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC
Q 006630 512 VWSCIVTK------GC------ELN-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQ 559 (638)
Q Consensus 512 ~~~~~~~~------~~------~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~ 559 (638)
+|.+.+.. +. .++ ...+.-+...+.+.|..+.|+.+++.+++.++ .|.
T Consensus 124 ~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~ 189 (321)
T PF08424_consen 124 VYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPE 189 (321)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCcc
Confidence 55444332 10 001 11222333445677888888888888887553 444
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=81.64 E-value=51 Score=35.75 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=18.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006630 134 YVHSYDVYRALIKSLSKMRKFGAVWALMEE 163 (638)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 163 (638)
..+++.-|+ .+..+.-.|.++.|.+++..
T Consensus 145 ~~~~p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 145 YEHDPDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp CSGSHHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred CccchhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 345567777 45666666888888877743
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=81.57 E-value=61 Score=32.44 Aligned_cols=65 Identities=6% Similarity=0.031 Sum_probs=39.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 312 NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA---DVVTYTTLISGFCKSRKIDRCYEILDSMIQ 376 (638)
Q Consensus 312 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 376 (638)
...++..++..+.+.|.++.|...+..+...+... ++...-.-...+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44566677777777777777777777776532111 223333334555566777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=81.42 E-value=33 Score=29.23 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=40.2
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYG 204 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 204 (638)
..++++++..+++.|.-..|..+...+|...+ +...|++++|+++|+.+.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence 46788888888888888877766666665554 467888888888888887653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=81.41 E-value=17 Score=32.66 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=9.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHH
Q 006630 523 LNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 523 p~~~~~~~li~~~~~~g~~~~A 544 (638)
+|+..+.+|+..+.+.|+++.|
T Consensus 176 ~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 176 FNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444444
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.39 E-value=45 Score=30.80 Aligned_cols=211 Identities=14% Similarity=0.115 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMI 375 (638)
Q Consensus 296 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 375 (638)
++.++..+..+......... .+.-.+.+++|-++|.+.... -.=...|+.-..+|++.-+ +. .
T Consensus 3 ~a~~l~k~AEkK~~~s~gF~------lfgg~~k~eeAadl~~~Aan~--yklaK~w~~AG~aflkaA~------~h---~ 65 (288)
T KOG1586|consen 3 DAVQLMKKAEKKLNGSGGFL------LFGGSNKYEEAAELYERAANM--YKLAKNWSAAGDAFLKAAD------LH---L 65 (288)
T ss_pred cHHHHHHHHHHhcccCCccc------ccCCCcchHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHH------HH---H
Confidence 34555555555432222111 344456788888888765421 0011223333333332211 10 1
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDS 455 (638)
Q Consensus 376 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 455 (638)
+.|-+-|..+-..-..-|.+.++.++|...++..+ ..|...|++..|-+...++-+
T Consensus 66 k~~skhDaat~YveA~~cykk~~~~eAv~cL~~ai---------------eIyt~~Grf~~aAk~~~~iaE--------- 121 (288)
T KOG1586|consen 66 KAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAI---------------EIYTDMGRFTMAAKHHIEIAE--------- 121 (288)
T ss_pred hcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHH---------------HHHHhhhHHHHHHhhhhhHHH---------
Confidence 22333333322222333445557777766655443 345566666655444333322
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHHhC--CCC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 456 FVVMVHGFLGQ-GCLIEACEYFKEMVGR--GLL-SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 456 ~~~li~~~~~~-g~~~~A~~~~~~m~~~--~~~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
.|-.. .++++|+..|++.-+- +-. .......+..+..--...+++.+|+++|+++.......+..-|..-
T Consensus 122 ------iyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~K 195 (288)
T KOG1586|consen 122 ------IYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAK 195 (288)
T ss_pred ------HHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHH
Confidence 22221 3344555555544331 100 0011122333333344667788888888887766444333333321
Q ss_pred ---H-HHHH--ccCCHHHHHHHHHHHHh
Q 006630 532 ---I-HSLF--SNGHVKEACSYCLDMMD 553 (638)
Q Consensus 532 ---i-~~~~--~~g~~~~A~~~~~~m~~ 553 (638)
+ .++| -.++.-.+...+++..+
T Consensus 196 dyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 196 DYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 1 1222 22454455555555554
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.88 E-value=17 Score=31.99 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 507 EMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
++|.+.|+++... +|+...|+.-+...
T Consensus 97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVDE--DPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH---TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCcHHHHHHHHHH
Confidence 3344444444433 56666666555443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.71 E-value=94 Score=34.09 Aligned_cols=103 Identities=6% Similarity=0.018 Sum_probs=57.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (638)
+-+.+.+.+++|++..+.....-+...........|..+...|++++|-...-.|. .-+..-|.--+.-+...++.
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhcccccc
Confidence 44567777888887766544332221234556667777777788888777776665 23445555555555555544
Q ss_pred HHHHHHHHHHhccCC-CCHHHHHHHHHHHHh
Q 006630 226 KEAAKLFDEMRERFK-PSLRHFTSLLYGWCK 255 (638)
Q Consensus 226 ~~A~~~~~~~~~~~~-~~~~~~~~li~~~~~ 255 (638)
.. ++.-++...+ .+...|..++..+..
T Consensus 440 ~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 440 TD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred ch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 32 2222333211 244556666666655
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.57 E-value=4.4 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
+++.|...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 555566666666666666666655543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.16 E-value=26 Score=27.25 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=40.9
Q ss_pred HHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 191 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
-+..+-++.+....+-|++.+..+-+.+|.+.+++..|.++|+.++.+...+...|..++
T Consensus 24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 345555556666667788888888888888888888888888877755444444555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 96.8 bits (239), Expect = 6e-21
Identities = 30/201 (14%), Positives = 74/201 (36%), Gaps = 4/201 (1%)
Query: 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD---AGFEPD 277
K S E A + + + + +L A ++LV
Sbjct: 105 KLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEA-NRAF 336
+ +YN ++ G+A+ G + +L ++ G P+ SY +Q + R ++ R
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 337 VEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396
+M + G + + L+S ++ + +++ + LP + ++ K
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
Query: 397 EELEECVELMGEMRKIGCVPD 417
+ +L ++ + C+ +
Sbjct: 285 DGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.5 bits (155), Expect = 7e-11
Identities = 29/222 (13%), Positives = 67/222 (30%), Gaps = 5/222 (2%)
Query: 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355
A L R+ P L+Q ++ + ++
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 356 SGFCKSRKIDRCYEILD---SMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI 412
+ ++ + +L Q+ L Y +ML ++ +E V ++ ++
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 413 GCVPDVSNYNVVIRLACKLGELKEAVN-VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471
G PD+ +Y ++ + + + +M L F ++ + +++
Sbjct: 195 GLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL-QALFTAVLLSEEDRATVLK 253
Query: 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513
A K P T K L + + +V K
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.7 bits (140), Expect = 4e-09
Identities = 27/173 (15%), Positives = 53/173 (30%), Gaps = 4/173 (2%)
Query: 141 YRALIKSLSKMRKFGAVWALMEEMR--KEKPQLITTEVFVILMRRFASARMVKKAIEVLD 198
A K + L+ ++K +L+T +++ +M +A K+ + VL
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 199 EMPKYGCEPDEFVFGCLLDALCKNSSVKEAA-KLFDEMRER-FKPSLRHFTSLLYGWCKE 256
+ G PD + L + + + ++M + K LL +
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249
Query: 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309
L V P V + LL +L ++ C
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 6e-09
Identities = 33/248 (13%), Positives = 77/248 (31%), Gaps = 5/248 (2%)
Query: 376 QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435
G L + L ++ + + R+ + + YN V+ + G K
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182
Query: 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACE-YFKEMVGRGLLSAPQYGTLK 494
E V V ++ A L+P S+ + Q E ++M GL + +
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242
Query: 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554
L+ RA ++ V + + +++ L +
Sbjct: 243 --LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
Query: 555 DVM--PQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKA 612
+ Q + + + ++ + RK + ++ R R+ K +
Sbjct: 301 QCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRL 360
Query: 613 KKQVDGRK 620
+++V +
Sbjct: 361 EREVYEGR 368
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 3e-13
Identities = 74/565 (13%), Positives = 167/565 (29%), Gaps = 165/565 (29%)
Query: 116 DAGNLGYRYY-MWASKQPNYVHSYDVY------RALIKSLSKMRKFGAVWALMEEMRKEK 168
+ G Y+Y + + + +V ++D ++++ ++ + K
Sbjct: 10 ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-----------EEIDHIIMSK 58
Query: 169 PQLITTE-VFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL---CKNSS 224
+ T +F L+ + MV+K +E + Y F L+ + + S
Sbjct: 59 DAVSGTLRLFWTLLSK--QEEMVQKFVEEVLR-INYK-------F--LMSPIKTEQRQPS 106
Query: 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284
+ +++ E R+R + F Y + ++ + L++++ ++++
Sbjct: 107 MMT--RMYIEQRDRLYNDNQVFAK--YNVSRLQPYLKLRQALLELRP---AKNVLID--- 156
Query: 285 LSGYAQMGKMTDAFELLKEMRRKGCDP---------NANSYTVLI---QALC-------- 324
G GK A ++ + + N NS ++ Q L
Sbjct: 157 --GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 325 -----------RMEKMEEANRAFVEMERSGCEA----DVVTYTTLISGF---CKSRKIDR 366
R+ ++ R + + V + F CK R
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLL-KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 367 CYEILDSMIQRGILPNQLTYLHIMLAHEKKE-ELEECVELMGEMRKIGCVPDVSNYNVVI 425
++ D + + T HI L H +E L + Y
Sbjct: 274 FKQVTDFL-------SAATTTHISLDHHSMTLTPDEVKSL------------LLKY---- 310
Query: 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC--EYFKEMVGRG 483
L C+ +L E + +P + + + +K +
Sbjct: 311 -LDCRPQDLPR--------EVLTTNP-------RRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 484 LLSAPQYGTLKALLNSLLRAQKVEMA---KDVWSCIVTKGCELNVYAWTIWIHSLFSNGH 540
L + + +L L + R ++ I T + + IW
Sbjct: 355 LTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAH--IPTI-----LLS-LIW--------- 396
Query: 541 VKEACSYCLDMMDADVMPQPDTFAK---LMRGLKK----LYNRQIAAEITEKVRKMAAER 593
D++ +DVM + K + + K+ + + + E+ K+ A
Sbjct: 397 --------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL--ELKVKLENEYALH 446
Query: 594 QITFKMYKRRGERDLKEKAKKQVDG 618
+ Y D + +D
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 2e-11
Identities = 90/641 (14%), Positives = 179/641 (27%), Gaps = 182/641 (28%)
Query: 53 DDCKCNNTTDTHG---SHNEFSH------DVEKIFRILKKFHSRLPKLELALQHSGVVLR 103
D+ C + D S E H V R+ S+ + E+ + VLR
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK-QE-EMVQKFVEEVLR 88
Query: 104 PG---LTERVINRCGDAGNLGYRYYMWASKQPNYVHS---YDVYR-----ALIKSLSKMR 152
L + + Y + N Y+V R L ++L ++R
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148
Query: 153 K-----------FGAVWALMEEMRKEKPQL-ITTEVFVILMRRFASARMVKKAIEVLDEM 200
G W ++ K Q + ++F + ++ S V + ++ L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL--- 205
Query: 201 PKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL------YGW- 253
+ + D + + E+R K S + LL
Sbjct: 206 ----LYQIDPNWTSRSDHSSNIKLRIHSIQ--AELRRLLK-SKPYENCLLVLLNVQNAKA 258
Query: 254 -------CKEGKLV--------------EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292
CK L+ ++ + PD V +LL Y
Sbjct: 259 WNAFNLSCK--ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK--SLLLKYLDC- 313
Query: 293 KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYT 352
+L +E+ +P S +I R + + + C+
Sbjct: 314 ---RPQDLPREV--LTTNPRRLS---IIAESIR----DGLAT-WDNWKHVNCDK------ 354
Query: 353 TLISGFCKSRKIDRCYEILDSMIQR------GILPNQLTYLHI------MLAHEKKEELE 400
+ I+ +L+ R + P HI ++ + +
Sbjct: 355 -------LTTIIESSLNVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDVIKSDV 404
Query: 401 ECVELMGEMRKIGCV---PD---VSNYNVVIRLACKLGELK-------EAVNVWNEMEAA 447
++ ++ K V P +S ++ + L KL + N+ ++
Sbjct: 405 M--VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 448 SLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTL----KALLNSLLR- 502
L P +YF +G L + + L+ R
Sbjct: 463 DLIPPYLD------------------QYFYSHIGHHLKNIEHPERMTLFRMVFLD--FRF 502
Query: 503 -AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSL-FSNGHVKEACSYCLDMMDADVMPQP 560
QK+ W+ G LN + L F ++ + + + ++
Sbjct: 503 LEQKIRHDSTAWNA---SGSILNT------LQQLKFYKPYICDNDPK-YERLVNAIL--- 549
Query: 561 DTFAKLMRGLKKLYNR------QIAAEITEKVRKMAAERQI 595
F L + + L +IA ++ A +Q+
Sbjct: 550 -DF--LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 8e-07
Identities = 32/211 (15%), Positives = 74/211 (35%), Gaps = 12/211 (5%)
Query: 131 QPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV 190
+P+ R + L+ + A+ A ++ + T ++ + +
Sbjct: 58 KPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNP 117
Query: 191 KKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250
A+ L + C + L K + A K +M+++ + + +
Sbjct: 118 DAALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA 171
Query: 251 YGWCKEG--KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
+ G KL +A Y+ +M D P +++ N + + G+ A +L+E K
Sbjct: 172 WVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK- 229
Query: 309 CDP-NANSYTVLIQALCRMEKMEEANRAFVE 338
D + + L+ + K E ++
Sbjct: 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLS 259
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 38/267 (14%), Positives = 78/267 (29%), Gaps = 24/267 (8%)
Query: 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249
+ +A V P+ E D F++ L ++ + DE++ P L+
Sbjct: 19 INEAQRVKPSSPERDVERDVFLYRAYLAQ-------RKYGVVLDEIKPSSAPELQAVRMF 71
Query: 250 LYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308
+ L + + + S Y A L +
Sbjct: 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD--- 128
Query: 309 CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE-ADVVTYTTLISGFCKSRKIDRC 367
+ + +Q L ++++++ A + +M+ + T +S K+
Sbjct: 129 ---SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427
Y I M + P L H + E ++ E D + +I L
Sbjct: 186 YYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK----DSGHPETLINL 240
Query: 428 AC---KLGELKEAVNVWNEMEAASLSP 451
LG+ E N + +
Sbjct: 241 VVLSQHLGKPPEVTNRYLS-QLKDAHR 266
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.58 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.4 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.2 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.15 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.14 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.12 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.12 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.11 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.03 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.01 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.0 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.97 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.94 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.93 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.92 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.9 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.84 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.83 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.82 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.82 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.81 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.75 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.74 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.72 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.72 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.65 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.65 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.64 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.62 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.61 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.6 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.6 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.59 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.58 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.56 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.56 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.55 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.53 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.49 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.49 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.48 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.48 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.39 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.38 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.31 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.31 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.26 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.25 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.24 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.23 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.23 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.22 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.21 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.21 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.2 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.16 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.12 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.12 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.12 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.11 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.11 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.02 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.01 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.99 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.97 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.92 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.9 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.88 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.86 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.69 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.69 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.66 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.66 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.6 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.58 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.51 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.49 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.33 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.23 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.05 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.03 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.92 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.81 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.81 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.71 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.49 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.44 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.36 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.03 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.82 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.6 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.45 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.19 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.18 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.84 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.73 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.97 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.97 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.96 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.67 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.54 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 90.24 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.23 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.07 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.4 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 88.99 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.96 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.92 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.45 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.24 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.87 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.56 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 85.54 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.23 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 84.72 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.22 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.98 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 81.28 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.16 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.54 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.12 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=376.63 Aligned_cols=473 Identities=9% Similarity=-0.003 Sum_probs=347.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
.+++..|+.++..|.+.|++++|+.+|++|....| +..++..++.+|.+.|++++|+.+|+.+... +++..+++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 155 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITG---NPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYL 155 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCC---CchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHH
Confidence 36788999999999999999999999999987654 6688899999999999999999999998654 789999999
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccC----------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERF----------------KPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDI 278 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 278 (638)
++.+|.+.|++++|.++|+++.... +++..+|+.++.+|.+.|++++|.++|++|.+.+ +.+.
T Consensus 156 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~ 234 (597)
T 2xpi_A 156 AAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCY 234 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhh
Confidence 9999999999999999999643221 3458999999999999999999999999999875 3345
Q ss_pred HHHHHHHHHHHHcCCHhH--HHHH-HHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 279 VVYNNLLSGYAQMGKMTD--AFEL-LKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLI 355 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 355 (638)
..+..+...+...+..+. +..+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+|+.++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 555555544332222111 1111 334444444444555666677777777777777777777654 46777777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 006630 356 SGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELK 435 (638)
Q Consensus 356 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 435 (638)
.+|.+.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++.+.+.. +.+..+++.++.+|.+.|+++
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 390 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKIS 390 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHH
Confidence 7777777777777777777765433 55667777777777777777777777776543 556677777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSC 515 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~ 515 (638)
+|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|++
T Consensus 391 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 466 (597)
T 2xpi_A 391 EARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF---QGTHLPYLFLGMQHMQLGNILLANEYLQS 466 (597)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---TTCSHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777776654 4456677777777777777777777777777665 34566777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 516 IVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 516 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
+.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+. +..|+ ..+|..++.+|.+.|++++|+++++++++.
T Consensus 467 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 467 SYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 76653 235677777777777777777777777777654 55666 567777777777777777777777777777
Q ss_pred HHhccccc----chhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 590 AAERQITF----KMYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 590 ~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
+|+++..+ .+|.+.|++++|.+.++++.+..+.
T Consensus 546 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 546 STNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 77766554 5677777777777777776655443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=361.49 Aligned_cols=481 Identities=8% Similarity=-0.008 Sum_probs=416.1
Q ss_pred ChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 182 (638)
+...+..++..|.+.|+...+...+.... +..|+..++..++.+|.+.|++++|..+|+.+... ..+..+++.++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~ 158 (597)
T 2xpi_A 83 REDYLRLWRHDALMQQQYKCAAFVGEKVL-DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY---NRSSACRYLAAF 158 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG---GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCchHHHHHHHHHH-hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc---ccchhHHHHHHH
Confidence 34456778888989998877665554332 23467789999999999999999999999988654 247889999999
Q ss_pred HHHhcCCHHHHHHHHHhch-hC--------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHH
Q 006630 183 RFASARMVKKAIEVLDEMP-KY--------------GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFT 247 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~-~~--------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 247 (638)
+|.+.|++++|+++|+++. .. |.+++..+|+.++.+|.+.|++++|.++|+++.+..+.+...+.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHH
Confidence 9999999999999999543 22 33456899999999999999999999999999887777888888
Q ss_pred HHHHHHHhcCCHHHHHH--H-HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 006630 248 SLLYGWCKEGKLVEAKY--V-LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALC 324 (638)
Q Consensus 248 ~li~~~~~~g~~~~A~~--~-~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 324 (638)
.+...+...+..+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence 88877665544333222 1 555665555556677888899999999999999999999876 579999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 325 RMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 325 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999875 4478889999999999999999999999999754 3478899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006630 405 LMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL 484 (638)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 484 (638)
+|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|+++|+++.+..
T Consensus 395 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 471 (597)
T 2xpi_A 395 YFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF- 471 (597)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998764 5678899999999999999999999999999876 6688999999999999999999999999999876
Q ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006630 485 LSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN--VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558 (638)
Q Consensus 485 ~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 558 (638)
+.+..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++++.+ ..
T Consensus 472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~ 548 (597)
T 2xpi_A 472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN 548 (597)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence 467889999999999999999999999999876 66777 7899999999999999999999999998764 44
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 559 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+..+|..+..+|...|++++|.+.++++++++|+++..+
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~ 587 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMAS 587 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHH
Confidence 788999999999999999999999999999999998775
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.2e-28 Score=249.01 Aligned_cols=379 Identities=13% Similarity=0.067 Sum_probs=235.5
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (638)
.+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++......|.+..+|..+...|.+.|++++|
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A 86 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 3444555555555555554432 233344445555555556666666555555555555555666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 263 KYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 263 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
.+.|+++.+.. +.+..+|..+..++...|++++|.+.++++.+... .+...+..+...+...|++++|.+.|+++.+.
T Consensus 87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 164 (388)
T 1w3b_A 87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66666655542 22344555666666666666666666666555421 13344555555666666666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 343 GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 343 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
. +.+..+|..+...|...|++++|+..|+++.+.+.. +...+..+...+...|++++|...+.+..+.. +.+..++.
T Consensus 165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 241 (388)
T 1w3b_A 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHG 241 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHH
Confidence 2 224556666666666666666666666666654322 45556666666666666677766666666543 34566667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 502 (638)
.+...|.+.|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+..
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC---PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHH
Confidence 77777777777777777777777654 4456677777777777777777777777777665 4566677777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhc
Q 006630 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLY 574 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g 574 (638)
.|++++|...++++.+.. +.+...|..++.+|.+.|++++|+..|+++++. .|+ ...|..+...+...|
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 777777777777776652 234667777777777888888888888777753 443 556777776666555
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.8e-28 Score=248.56 Aligned_cols=380 Identities=12% Similarity=0.045 Sum_probs=206.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
...+.+.|++++|...++.+....|. +...+..+...+...|++++|...++...+.. +.+..+|..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34445556666666666555555443 44445555555555566666665555555432 3445555566666666666
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
+++|...|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6666666655555445555555566666666666666666665555542 222334445555555556666666666555
Q ss_pred HHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 305 RRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 305 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (638)
.+.. +.+..+|..+...|.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|+..|++....... +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 5542 1234555555555666666666666666555543 223455555555555566666666665555553221 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
++..+...+...|++++|.+.++++.+.+ +.+..++..+...|.+.|++++|...|+++.+.. +.+..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 55555555556666666666665555543 3344555555555666666666666666555543 445555555556666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS 537 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 537 (638)
..|++++|+..|+++.+.. +.+..++..+...+.+.|++++|...|+++++.. +.+...|..+...+..
T Consensus 317 ~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~ 385 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF---PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE 385 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence 6666666666666555543 2344555555555556666666666666555431 1134444444444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=263.56 Aligned_cols=186 Identities=17% Similarity=0.272 Sum_probs=112.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HhHHHHHHHHHHHcCCCCCHHh
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK---------MTDAFELLKEMRRKGCDPNANS 315 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---------~~~a~~~~~~~~~~g~~~~~~~ 315 (638)
.++.+|.+|++.|++++|+++|++|.+.|+.||..|||.||.+|++.+. ++.|.++|++|.+.|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4566666666666666666666666666666666666666666665443 4555555666655555556666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 316 YTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK 395 (638)
Q Consensus 316 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 395 (638)
|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666555555556666666666565556555665555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=263.56 Aligned_cols=206 Identities=19% Similarity=0.216 Sum_probs=174.7
Q ss_pred HHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhc-cCCCCHHHHHHHHHHHHhcCC---------H
Q 006630 191 KKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRE-RFKPSLRHFTSLLYGWCKEGK---------L 259 (638)
Q Consensus 191 ~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~---------~ 259 (638)
..+..+.+.+.+.+..+.+ .+++.+|++|++.|++++|.++|++|.+ ++.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4455666777777766554 4688899999999999999999999975 689999999999999987665 6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (638)
++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 340 ERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396 (638)
Q Consensus 340 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 396 (638)
.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..++..
T Consensus 167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999888764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-26 Score=241.42 Aligned_cols=451 Identities=9% Similarity=-0.034 Sum_probs=335.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...|..+...+.+.|++++|+..|+++...+| +..++..+..++...|++++|+..++++.+.+ +.+..++..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 34566777888888999999999988888764 67788888888888899999999888888764 456678888888
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 297 (638)
+|.+.|++++|...|+++....+++......++..+........+.+.+..+...+..|+...+..-.............
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 88888999999888888877666666666666666665555555555554443333223222222111111111111111
Q ss_pred HHHHHHHHHcCC---------CCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHH
Q 006630 298 FELLKEMRRKGC---------DPNANSYTVLIQALCR---MEKMEEANRAFVEMER-----SGC--------EADVVTYT 352 (638)
Q Consensus 298 ~~~~~~~~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~ 352 (638)
..+...+..... +.+...+......+.. .|++++|..+|+++.+ ..- +.+..+|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 111111111111 1124445555555554 8999999999999887 211 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG 432 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 432 (638)
.+...+...|++++|+..|+++.+.... ..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 318 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ 318 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence 8899999999999999999999987544 8888889999999999999999999998764 557788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDV 512 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~ 512 (638)
++++|...|+++.+.. +.+...+..+...+...|++++|+.+|+++.... +.+..++..+...+...|++++|...
T Consensus 319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF---PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999876 5577899999999999999999999999999875 34567888899999999999999999
Q ss_pred HHHHHHcCC-CCC----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 513 WSCIVTKGC-ELN----VYAWTIWIHSLFS---NGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 513 ~~~~~~~~~-~p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
++++.+... .++ ...|..+..++.. .|++++|...++++++.. ..+..++..+...+...|++++|...++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999987621 122 4488999999999 999999999999998753 3357788899999999999999999999
Q ss_pred HHHHHHHhcccccchh
Q 006630 585 KVRKMAAERQITFKMY 600 (638)
Q Consensus 585 ~~~~~~p~~~~~~~~y 600 (638)
++++++|+++..+..+
T Consensus 474 ~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 474 ESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHCSSHHHHHHHH
T ss_pred HHHHhccccHHHHHHH
Confidence 9999999988876443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=237.81 Aligned_cols=439 Identities=11% Similarity=-0.002 Sum_probs=331.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 006630 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253 (638)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 253 (638)
...+......+.+.|++++|+..|+++.+.+ |+..++..+..+|.+.|++++|...|+++.+..|.+..+|..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 3456667888899999999999999998874 79999999999999999999999999999887788899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEAN 333 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 333 (638)
.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+..-..............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 99999999999999999876 44555555566655554444444444443333322222221111111111111111111
Q ss_pred HHHHHHHHcCC---------CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCCC--------CHHHHHH
Q 006630 334 RAFVEMERSGC---------EADVVTYTTLISGFCK---SRKIDRCYEILDSMIQ-----RGILP--------NQLTYLH 388 (638)
Q Consensus 334 ~~~~~m~~~g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~t~~~ 388 (638)
.+...+..... +.+...+..+...+.. .|++++|+.+|+++.+ ....| +..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 11111111110 1124455555555554 8999999999999988 31112 3457778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (638)
+...+...|++++|..+++.+.+.. |+...+..+...|...|++++|...|+++.+.. +.+...|..+...+...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCC
Confidence 8889999999999999999998875 338888999999999999999999999999875 5677899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
+++|+..|+++.... +.+..++..+...+...|++++|...++++.+.. +.+...|..+...+...|++++|...+
T Consensus 320 ~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 395 (514)
T 2gw1_A 320 YDQAGKDFDKAKELD---PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQY 395 (514)
T ss_dssp TTHHHHHHHHHHHTC---SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC---hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999876 3456688888999999999999999999998863 336788999999999999999999999
Q ss_pred HHHHhCC-CCCC----HHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 549 LDMMDAD-VMPQ----PDTFAKLMRGLKK---LYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 549 ~~m~~~~-~~p~----~~t~~~ll~~~~~---~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
+++++.. -.|+ ...|..+...+.. .|++++|...++++++.+|+++..+ .+|...|++++|.+.+++.
T Consensus 396 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 396 DLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp HHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9987631 1222 3478899999999 9999999999999999999988764 6899999999999999997
Q ss_pred hhhhhh
Q 006630 617 DGRKRR 622 (638)
Q Consensus 617 ~~~~~~ 622 (638)
.+..+.
T Consensus 476 ~~~~~~ 481 (514)
T 2gw1_A 476 ADLART 481 (514)
T ss_dssp HHHCSS
T ss_pred HHhccc
Confidence 666554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=6.5e-24 Score=227.62 Aligned_cols=438 Identities=10% Similarity=0.014 Sum_probs=336.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...|..+...+.+.|++++|+..|+++...+|. +..++..+..++...|++++|++.|+++.+.+ +.+..++..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 456778889999999999999999999998875 78899999999999999999999999998875 567889999999
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHc
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA------GFEPDIVVYNNLLSGYAQM 291 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~ 291 (638)
+|...|++++|...|+.+.. +....+..+..+...+...+|...++++... ...|+.. .+..+...
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~ 173 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGI 173 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHhc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHh
Confidence 99999999999999974432 2222333455666677778899999998653 1233333 33445555
Q ss_pred CCHhHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHh--------cCCHHHHHHHHHHHHHcCCCCC--------HHHHHHH
Q 006630 292 GKMTDAFELLKEMRRKGCDPNA-NSYTVLIQALCR--------MEKMEEANRAFVEMERSGCEAD--------VVTYTTL 354 (638)
Q Consensus 292 g~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~~~--------~~~~~~l 354 (638)
.+.+.+...+..... ..+.. .....+...+.. .|++++|..+|+++.+. .|+ ..++..+
T Consensus 174 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYT 249 (537)
T ss_dssp SCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHH
Confidence 666655544433222 12221 123333333222 25789999999999876 343 2356677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
...+...|++++|+..|+++.+.. |+..++..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCH
Confidence 788889999999999999999864 557888889999999999999999999998865 56788899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
++|...|+++.+.+ +.+...|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF---PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999998875 5567899999999999999999999999999876 3556688889999999999999999999
Q ss_pred HHHHcC-----CCCCHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHH
Q 006630 515 CIVTKG-----CELNVYAWTIWIHSLFSN----------GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579 (638)
Q Consensus 515 ~~~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A 579 (638)
++.+.. .......+.....++... |++++|+..|+++++.. ..+...+..+...+...|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 987752 111223345556777777 99999999999998752 34577899999999999999999
Q ss_pred HHHHHHHHHHHHhcccccc
Q 006630 580 AEITEKVRKMAAERQITFK 598 (638)
Q Consensus 580 ~~~~~~~~~~~p~~~~~~~ 598 (638)
.+.+++++++.|+++....
T Consensus 482 ~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 482 IELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHH
Confidence 9999999999999887753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-23 Score=216.16 Aligned_cols=319 Identities=11% Similarity=0.035 Sum_probs=222.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHH
Q 006630 133 NYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVF 212 (638)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~ 212 (638)
..+.+..+|..++..|.+.|++++|+.+|+++....|. +..++..+..++...|++++|+..|+++.+.+ +.+..++
T Consensus 21 ~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 97 (450)
T 2y4t_A 21 QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR 97 (450)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 33567788999999999999999999999999988764 78889999999999999999999999998875 4567889
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCH---HHHHHHHHH------------HHhcCCHHHHHHHHHHHHHCCCCCC
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSL---RHFTSLLYG------------WCKEGKLVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~li~~------------~~~~g~~~~A~~~~~~m~~~g~~p~ 277 (638)
..+..+|.+.|++++|...|+++....+.+. ..|..++.. +...|++++|...|+++.+.. +.+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 176 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWD 176 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9999999999999999999999988766666 777766544 777777777777777777654 446
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---
Q 006630 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL--- 354 (638)
Q Consensus 278 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--- 354 (638)
..++..+..+|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...|+++.... +.+...+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~ 254 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV 254 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHH
Confidence 6677777777777777777777777776652 3356677777777777777777777777776552 2233444333
Q ss_pred ---------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 355 ---------ISGFCKSRKIDRCYEILDSMIQRGILPN----QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNY 421 (638)
Q Consensus 355 ---------i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 421 (638)
...|.+.|++++|+..|+++.+.... + ...+..+...+.+.|++++|...++.+.+.. +.+...+
T Consensus 255 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 255 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 55566666666666666666553211 1 2345555555666666666666666655442 3345555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 422 NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 422 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
..+..+|.+.|++++|...|+++.+.. +.+...+..+.
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 370 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 566666666666666666666665543 22334444333
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-23 Score=216.00 Aligned_cols=314 Identities=11% Similarity=0.015 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH
Q 006630 173 TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG 252 (638)
Q Consensus 173 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~ 252 (638)
+...+..+...+.+.|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+..|.+..+|..+...
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44555555555666666666666666555432 33455555566666666666666666666555445555556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCH
Q 006630 253 WCKEGKLVEAKYVLVQMKDAGFEPDI---VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKM 329 (638)
Q Consensus 253 ~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 329 (638)
|.+.|++++|.+.|+++.+.. +.+. ..+..++..+... .+..+...+.+.|++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCCH
Confidence 666666666666666655442 1122 3444443320000 011112234455555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEM 409 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 409 (638)
++|...|+++.+.. +.+...+..+...|.+.|++++|+..|+++.+... .+..++..+...+...|++++|...++.+
T Consensus 160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555432 23445555555555555555555555555544321 23445555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 006630 410 RKIGCVPDVSNYNVV------------IRLACKLGELKEAVNVWNEMEAASLSPG-----TDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 410 ~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~A 472 (638)
.+.. +.+...+..+ ...|.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|
T Consensus 238 ~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 238 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4432 2222222222 556666666777776666666542 33 23566666666666777777
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
+..++++.... +.+..++..+..+|...|++++|...|+++++.
T Consensus 315 ~~~~~~a~~~~---p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 315 IRVCSEVLQME---PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 77666666554 245566666666666666777776666666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-23 Score=222.59 Aligned_cols=432 Identities=9% Similarity=0.020 Sum_probs=328.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHH
Q 006630 174 TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGW 253 (638)
Q Consensus 174 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~ 253 (638)
...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|++++|+..|+++.+..|.+..+|..+...|
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 3556778888899999999999999998775 567889999999999999999999999999887788999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHH
Q 006630 254 CKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CDPNANSYTVLIQALCRMEKMEE 331 (638)
Q Consensus 254 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~ 331 (638)
...|++++|...|+ .... .|+. ....+..+...+....|...++.+.... ..+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999996 3322 2322 2233445556666788888888886541 01111112334445666677777
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHh
Q 006630 332 ANRAFVEMERSGCEADVV-TYTTLISGFC--------KSRKIDRCYEILDSMIQRGILPNQ-------LTYLHIMLAHEK 395 (638)
Q Consensus 332 A~~~~~~m~~~g~~~~~~-~~~~li~~~~--------~~g~~~~A~~~~~~m~~~~~~p~~-------~t~~~ll~~~~~ 395 (638)
+...+...... .+... .+..+...+. ..|++++|+.+++++.+.... +. .++..+...+..
T Consensus 179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHh
Confidence 66655544322 22222 2333332222 235889999999999876433 22 346666778889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 396 KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475 (638)
Q Consensus 396 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (638)
.|++++|...++.+.+. .|+...+..+...|...|++++|...|+++.+.. +.+...|..+...+...|++++|+..
T Consensus 256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 332 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKED 332 (537)
T ss_dssp TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 99999999999999886 4558888899999999999999999999998875 56788999999999999999999999
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
|+++.... +.+..++..+...+...|++++|..+++++.+.. +.+...|..+..++...|++++|...|+++++..
T Consensus 333 ~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 333 FQKAQSLN---PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHC---TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 99999876 3456788889999999999999999999998873 3367789999999999999999999999987632
Q ss_pred -----CCCCHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhh
Q 006630 556 -----VMPQPDTFAKLMRGLKKL----------YNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 556 -----~~p~~~t~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~ 616 (638)
.......+......+... |++++|...++++++.+|+++.++ .+|...|++++|.+.+++.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 111222344556677777 999999999999999999988775 6899999999999999996
Q ss_pred hhhhh
Q 006630 617 DGRKR 621 (638)
Q Consensus 617 ~~~~~ 621 (638)
.+..+
T Consensus 489 l~~~~ 493 (537)
T 3fp2_A 489 AILAR 493 (537)
T ss_dssp HHHC-
T ss_pred HHhCC
Confidence 66544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-19 Score=179.54 Aligned_cols=331 Identities=10% Similarity=0.007 Sum_probs=199.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
++..+..+...+.+.|++++|+..|+++....|. +..++..+...+...|++++|+..|+++.+.. +.+...+..+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD--NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHH
Confidence 3556777888888888888888888888887764 66778888888888888888888888877653 34667788888
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCC---CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFK---PSLRHFTSL------------LYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 281 (638)
..|...|++++|...|+++.+..+ .+...+..+ ...+...|++++|.+.++++.+.. +.+...+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 888888888888888888876655 455555555 344455555555555555554432 2344444
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
..+...+...|++++|.+.++.+.+.. +.+..++..+...|...|++++|...|++..+.. +.+...+..+...
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~---- 231 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV---- 231 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH----
Confidence 445555555555555555555544432 2234444444455555555555555555444431 1112211111000
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHH
Q 006630 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDV----SNYNVVIRLACKLGELKEA 437 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A 437 (638)
. .......+...+...|++++|...++.+.+.. +.+. ..+..+...|.+.|++++|
T Consensus 232 -------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 232 -------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp -------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred -------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 0 00011122445666677777777776666543 2222 2234456677777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Q 006630 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL 501 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~ 501 (638)
...|++..+.. +.+...|..+...+...|++++|...|+++.+.. +.+...+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN---ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChHHHHHHHHHHH
Confidence 77777777654 4466777777777777777777777777777765 233445555544443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.8e-19 Score=179.50 Aligned_cols=318 Identities=10% Similarity=0.000 Sum_probs=165.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
.+..+...+...|++++|...|+++....|.+..+|..+...+...|++++|...|+++.+.. +.+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444444432 2233444444444444
Q ss_pred cCCHhHHHHHHHHHHHcCCC--CCHHhHHH------------HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 291 MGKMTDAFELLKEMRRKGCD--PNANSYTV------------LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356 (638)
Q Consensus 291 ~g~~~~a~~~~~~~~~~g~~--~~~~~~~~------------li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (638)
.|++++|.+.++.+.+.... .+...+.. +...+...|++++|...|+++.+.. +.+...+..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 44444444444444433110 01112211 2334444444444444444444332 223344444444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
.+...|++++|+..++++.+.. +.+...+..+...|...|++++
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~la~~~~~~~~~~~ 206 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKLK------------------------------------SDNTEAFYKISTLYYQLGDHEL 206 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC------------------------------------SCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 4444444444444444444432 2333444444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHH------------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH----HHHHHHHHHH
Q 006630 437 AVNVWNEMEAASLSPGTDS------------FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY----GTLKALLNSL 500 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~------------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~----~~~~~ll~~~ 500 (638)
|...|++..+.. +.+... ...+...+...|++++|+..++++..... .+. ..+..+...+
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~la~~~ 282 (359)
T 3ieg_A 207 SLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP---SVAEYTVRSKERICHCF 282 (359)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHHHH
Confidence 444444444332 222222 22335667778888888888888777652 222 2344566777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhh
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKL 573 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 573 (638)
...|++++|...++++.+.. +.+...|..+..++...|++++|...|+++++. .|+ ...+..+..+....
T Consensus 283 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 283 SKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 88888888888888887762 236777888888888888888888888888754 454 45566666555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-18 Score=184.55 Aligned_cols=427 Identities=9% Similarity=0.014 Sum_probs=295.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.+..+|..++. +.+.|++++|..+|+++....|. +...|...+..+.+.|++++|..+|++++.. .|+...|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~--~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPS--SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence 457788888887 46778888888888888887665 6778888888888888888888888888766 367777776
Q ss_pred HHHHH-HhCCCHHHHHH----HHHHHhcc---CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCC
Q 006630 215 LLDAL-CKNSSVKEAAK----LFDEMRER---FKPSLRHFTSLLYGWCK---------EGKLVEAKYVLVQMKDAGFEPD 277 (638)
Q Consensus 215 li~~~-~~~g~~~~A~~----~~~~~~~~---~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~g~~p~ 277 (638)
++... ...|+.+.|.+ +|+..... .+++...|...+..... .|++++|..+|++.++....+.
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence 66533 34566666654 66655432 23466777777776654 6777888888888776211111
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH------HcC---CCCC-
Q 006630 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME------RSG---CEAD- 347 (638)
Q Consensus 278 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g---~~~~- 347 (638)
...|..........|. ..+ ..++. .+.++++.|..++.++. +.. ++|+
T Consensus 165 ~~~~~~~~~~e~~~~~-~~~-------------------~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINI-HLA-------------------KKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp HHHHHHHHHHHHHHCH-HHH-------------------HHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred HHHHHHHHHHHHhhch-hHH-------------------HHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 1223222211111110 001 11111 12345566666665532 111 2333
Q ss_pred -------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-----
Q 006630 348 -------VVTYTTLISGFCKS----RKI----DRCYEILDSMIQRGILPNQLTYLHIMLAHEK-------KEELE----- 400 (638)
Q Consensus 348 -------~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-------~g~~~----- 400 (638)
...|...+...... ++. ++++.+|++.....+ -+...|...+..+.. .|+++
T Consensus 223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~ 301 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 301 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence 24566555433222 222 477888888887632 367777777777765 68876
Q ss_pred --HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 401 --ECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT-DSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 401 --~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|+.++|.++|+
T Consensus 302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 380 (530)
T 2ooe_A 302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFK 380 (530)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 899999999863235678899999999999999999999999999863 2233 589999999999999999999999
Q ss_pred HHHhCCCCCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-
Q 006630 478 EMVGRGLLSAPQYGTLKALLNS-LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD- 555 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 555 (638)
+..+.. +.+...+...... +...|++++|..+|+.+++.. +.+...|..++..+.+.|+.++|..+|++.+..+
T Consensus 381 ~Al~~~---~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 381 KAREDA---RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp HHHTCT---TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred HHHhcc---CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 999864 2333344333222 336899999999999998863 2367899999999999999999999999998753
Q ss_pred CCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 556 VMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 556 ~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
..|+ ...|...+......|+.+.+..+.+++.+..|+++
T Consensus 457 ~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 457 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 497 (530)
T ss_dssp SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCchhc
Confidence 2332 44788888888889999999999999999999754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-17 Score=171.12 Aligned_cols=360 Identities=11% Similarity=0.018 Sum_probs=264.7
Q ss_pred CCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCH
Q 006630 207 PDEFVFGCLLDALCK----NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCK----EGKLVEAKYVLVQMKDAGFEPDI 278 (638)
Q Consensus 207 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~ 278 (638)
.+...+..|...|.. .+++++|...|++..+. .+...+..|...|.. .+++++|.+.|++..+.| +.
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 355666666666666 67777777777766543 356667777777777 777777777777777654 55
Q ss_pred HHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 006630 279 VVYNNLLSGYAQ----MGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR----MEKMEEANRAFVEMERSGCEADVVT 350 (638)
Q Consensus 279 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~ 350 (638)
..+..|...|.. .+++++|.+.|++..+.| +...+..|...|.. .+++++|.+.|++..+.| +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 666667777766 667777777777777654 45566667777766 677888888888777654 6677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 351 YTTLISGFCK----SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK----KEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 351 ~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
+..+...|.. .+++++|++.|++..+.| +...+..+...+.. .++.++|.++++...+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 7777777776 778888888888777754 45566666666665 678888888888877653 455666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCCcHHHH
Q 006630 423 VVIRLACK----LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ-----GCLIEACEYFKEMVGRGLLSAPQYGTL 493 (638)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~~p~~~~~ 493 (638)
.+..+|.. .++.++|...|++..+.+ +...+..+...|... +++++|+..|++..+.+. + ..+
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~--~a~ 331 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---A--TAQ 331 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---H--HHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---H--HHH
Confidence 67777777 788888888888887654 455777777777776 889999999998888762 3 345
Q ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 494 KALLNSLLRAQ---KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 494 ~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
..+...+...| ++++|.+.|++..+.+ +...+..+...|.. .+++++|+.+|++..+.+ ++..+..+
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 56666666655 7888999999888763 67788888888888 789999999999888764 46677788
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHHH---Hhccccc
Q 006630 567 MRGLKK----LYNRQIAAEITEKVRKMA---AERQITF 597 (638)
Q Consensus 567 l~~~~~----~g~~~~A~~~~~~~~~~~---p~~~~~~ 597 (638)
...|.. .+|+++|...++++.+.+ |+++.+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~ 443 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRN 443 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHH
Confidence 888887 789999999999999998 5566554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-16 Score=167.13 Aligned_cols=391 Identities=12% Similarity=0.057 Sum_probs=270.0
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHhccCCCCHH
Q 006630 173 TTEVFVILMRRFAS----ARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK----NSSVKEAAKLFDEMRERFKPSLR 244 (638)
Q Consensus 173 ~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~ 244 (638)
++..+..+...|.. .+++++|+..|++..+.| +...+..|...|.. .+++++|...|++..+. .+..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 44445555555555 566666666666665542 45556666666666 66667777766665442 2556
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHhH
Q 006630 245 HFTSLLYGWCK----EGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ----MGKMTDAFELLKEMRRKGCDPNANSY 316 (638)
Q Consensus 245 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~ 316 (638)
.+..|...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.+.|++..+.| +...+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 66666666666 667777777777776654 45566666666665 567777777777776653 55666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 317 TVLIQALCR----MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK----SRKIDRCYEILDSMIQRGILPNQLTYLH 388 (638)
Q Consensus 317 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 388 (638)
..|...|.. .++.++|.+.|++..+.| +...+..+...|.. .+++++|+.+|++..+.| +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 677777776 677777777777777653 55666666666665 677888888887777653 4455556
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 389 IMLAHEK----KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL-----GELKEAVNVWNEMEAASLSPGTDSFVVM 459 (638)
Q Consensus 389 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~l 459 (638)
+...+.. .++.++|.+.|+...+.+ +...+..+..+|... +++++|...|++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 6666666 778888888888877654 455666777777776 88999999999888765 45677778
Q ss_pred HHHHHhcC---CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 460 VHGFLGQG---CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR----AQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 460 i~~~~~~g---~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|...| +.++|+++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG-----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 88877766 7889999999988875 34466677777877 789999999999998864 577888888
Q ss_pred HHHHc----cCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 533 HSLFS----NGHVKEACSYCLDMMDADVM-P-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 533 ~~~~~----~g~~~~A~~~~~~m~~~~~~-p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|.. .+++++|..+|++..+.+.. | +......+...+. .+.+.|.+..++.++..|++...
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~~~~~~~~~ 474 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIEKYAPEAWA 474 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888 89999999999999876532 2 2333333333322 35667777777777776665443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-19 Score=176.82 Aligned_cols=275 Identities=7% Similarity=-0.058 Sum_probs=133.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
..+..+...+...|++++|.++|+++.+.. +.+...+..++..+...|++++|+.+++++.+.... +...+..+...+
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 100 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYY 100 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHH
Confidence 334444444444455555555555444432 122333333444444455555555555554443221 333444444444
Q ss_pred HhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 394 EKKE-ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 394 ~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
...| ++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 4455 4555555555544432 2334445555555555555555555555554443 22334444455555555555555
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHccCCHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--------CELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
+..|+++.... +.+..++..+...+...|++++|...++++.+.. .+.....|..+..+|...|++++|
T Consensus 179 ~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 179 ERFFSQALSIA---PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHTTC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhC---CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 55555555543 2334455555555555555555555555554431 012234555555555555555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+..++++++.. ..+...|..+...+...|++++|.+.++++++++|+++..
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 306 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS 306 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH
Confidence 55555555431 1233445555555555555555555555555555555444
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-17 Score=174.18 Aligned_cols=418 Identities=10% Similarity=0.049 Sum_probs=284.6
Q ss_pred ChhHHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 006630 103 RPGLTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMR 182 (638)
Q Consensus 103 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~ 182 (638)
+......++.. ...|+...+...+......++.+...|..++..+.+.|++++|..+|++.....| +...|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p---~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL---HIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC---CHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---ChHHHHHHHH
Confidence 44455555653 4567776666666554455678899999999999999999999999999998764 5667777665
Q ss_pred HH-HhcCCHHHHHH----HHHhchhC-CCCC-CHHHHHHHHHHHHh---------CCCHHHHHHHHHHHhccCCCC--HH
Q 006630 183 RF-ASARMVKKAIE----VLDEMPKY-GCEP-DEFVFGCLLDALCK---------NSSVKEAAKLFDEMRERFKPS--LR 244 (638)
Q Consensus 183 ~~-~~~~~~~~A~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~~~~~~--~~ 244 (638)
.. ...|+.+.|.+ +|+..... |..| +...|...+....+ .|+++.|..+|++... .|.+ ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~ 166 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQ 166 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHH
Confidence 33 34566666654 77776543 5444 56788888887665 6899999999999887 3322 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH------HcC---CCCC---
Q 006630 245 HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR------RKG---CDPN--- 312 (638)
Q Consensus 245 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~------~~g---~~~~--- 312 (638)
.|..........|. .+...++. ...+++..|..++.++. +.. ++|+
T Consensus 167 ~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~ 224 (530)
T 2ooe_A 167 LWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTP 224 (530)
T ss_dssp HHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--C
T ss_pred HHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCCh
Confidence 34333221111111 01111111 01234555555555421 111 2333
Q ss_pred -----HHhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------
Q 006630 313 -----ANSYTVLIQALCRM----EKM----EEANRAFVEMERSGCEADVVTYTTLISGFCK-------SRKID------- 365 (638)
Q Consensus 313 -----~~~~~~li~~~~~~----g~~----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~~------- 365 (638)
...|...+...... ++. +.+..+|++..... +.+...|..++..+.+ .|+++
T Consensus 225 ~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 303 (530)
T 2ooe_A 225 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSD 303 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhH
Confidence 23444444332221 222 46777888877652 4467888888887775 68876
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 006630 366 RCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPD-V-SNYNVVIRLACKLGELKEAVNVWNE 443 (638)
Q Consensus 366 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~ 443 (638)
+|..+|++..+.-.+-+...+..++..+.+.|++++|..+|+++.+. .|+ . ..|..++..+.+.|++++|..+|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 88999998886322335778888888888999999999999999885 343 3 5788888888889999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C
Q 006630 444 MEAASLSPGTDSFVVMVHG-FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG-C 521 (638)
Q Consensus 444 m~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~ 521 (638)
..+.. +.+...|...+.. +...|+.++|..+|++.++.. +.+...+..++..+.+.|+.++|+.+|++++..+ .
T Consensus 382 Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~---p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~ 457 (530)
T 2ooe_A 382 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY---GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 457 (530)
T ss_dssp HHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCS
T ss_pred HHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC---CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCC
Confidence 98763 3333444333322 346899999999999998875 3457788888888889999999999999998863 2
Q ss_pred CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 522 EL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 522 ~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.| ....|...+......|+.+.+..+++++.+.
T Consensus 458 ~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 458 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 23 2457888888888899999999999888753
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-18 Score=172.60 Aligned_cols=284 Identities=13% Similarity=0.019 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
...+..+...+...|++++|..+|+++....|.+...+..++..+...|++++|..+++++.+.. +.+...|..+...+
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 33444455555555555555555555554444445555555555555555555555555555432 22344444555555
Q ss_pred HHcC-CHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 289 AQMG-KMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367 (638)
Q Consensus 289 ~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (638)
...| ++++|.+.+++..+.. +.+...+..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHH
Confidence 5555 5555555555554432 1133444455555555555555555555544432 11233344444444445555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006630 368 YEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447 (638)
Q Consensus 368 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (638)
...+++..+.. +.+...+..+...|...|++++|...|+++.+.
T Consensus 179 ~~~~~~al~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 179 ERFFSQALSIA------------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHHHHHHTTC------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC------------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 55554444432 223333344444444444444444444433321
Q ss_pred C--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 448 S--------LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 448 ~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
. .+.+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.|+++.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI---PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC---ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 0 01223445555555555555555555555555443 223344444555555555555555555555443
Q ss_pred CCCCCHHHHHHHHHHH
Q 006630 520 GCELNVYAWTIWIHSL 535 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~ 535 (638)
. +.+...+..+..++
T Consensus 300 ~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 300 R-RDDTFSVTMLGHCI 314 (330)
T ss_dssp C-SCCHHHHHHHHHHH
T ss_pred C-CCchHHHHHHHHHH
Confidence 1 11344444444444
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=175.81 Aligned_cols=307 Identities=12% Similarity=-0.023 Sum_probs=174.3
Q ss_pred hcCCHHHHHH-HHHhchhCCC-CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 186 SARMVKKAIE-VLDEMPKYGC-EP--DEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVE 261 (638)
Q Consensus 186 ~~~~~~~A~~-~~~~m~~~g~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 261 (638)
..|++++|+. .|++...... .| +...+..+...+.+.|++++|...|+++.+..|.+..+|..+...|...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3467788887 7776654321 11 245567777888888888888888888877777788888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 262 AKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 262 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
|...|+++.+.. +.+..++..+...+...|++++|.+.++.+.+.... +...+..+... .. ..
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~-------~~- 179 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG-------GA- 179 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------hh-
Confidence 888888887764 446777888888888888888888888888775322 22222111000 00 00
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP-NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
.+ ...+..+. .+...|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+...
T Consensus 180 ---~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 253 (368)
T 1fch_A 180 ---GL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLL 253 (368)
T ss_dssp ----------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred ---cc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHH
Confidence 00 00011111 1224455555555555554432211 34455555555555555555555555554432 334555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--------CCcHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS--------APQYGT 492 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--------~p~~~~ 492 (638)
+..+...|.+.|++++|...|+++.+.. +.+...+..+...|...|++++|...|+++....... +....+
T Consensus 254 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 332 (368)
T 1fch_A 254 WNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI 332 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHH
Confidence 5666666666666666666666665543 3445566666666666666666666666665532100 011456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~ 516 (638)
|..+..++...|++++|..++.+.
T Consensus 333 ~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 333 WSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHHHHHhCChHhHHHhHHHH
Confidence 666777777777777777666543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-18 Score=166.45 Aligned_cols=275 Identities=11% Similarity=0.063 Sum_probs=217.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 321 QALCRMEKMEEANRAFVEMERSGCEADV--VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE 398 (638)
Q Consensus 321 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 398 (638)
+-....|+++.|+..++..... .|+. .....+..+|...|++++|+..++. .-.|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3455668888888888776533 2332 3445567888888888888876644 234566777788888888888
Q ss_pred HHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 399 LEECVELMGEMRKIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
.++|.+.++.+...+. +.+...+..+...|...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8899988888887654 44566667777889999999999999887 4677889999999999999999999999
Q ss_pred HHHhCCCCCCCcHH-H--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 478 EMVGRGLLSAPQYG-T--LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 478 ~m~~~~~~~~p~~~-~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
++.+.. |+.. + ....+..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|...|+++++.
T Consensus 155 ~~~~~~----p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 155 KMQDQD----EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHC----TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhC----cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 998875 3321 1 112334444568999999999999987 3457889999999999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHH-HHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHH
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQI-AAEITEKVRKMAAERQITFKMYKRRGERDLKEKAK 613 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~-A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~ 613 (638)
. +-+..++..++..+...|+.++ +.++++++++++|+++.+.+++.+.+.++++..-|
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHc
Confidence 2 3367789999999999999865 67999999999999999999999999999988765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-18 Score=171.84 Aligned_cols=304 Identities=11% Similarity=-0.016 Sum_probs=172.5
Q ss_pred HhcCChhHHHH-HHHHHHhcCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH
Q 006630 149 SKMRKFGAVWA-LMEEMRKEKPQLI--TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV 225 (638)
Q Consensus 149 ~~~~~~~~A~~-~~~~m~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~ 225 (638)
...|++++|.. .|++.....|..+ +...+..+...+...|++++|+..|+++.+.. +.+..++..+...|.+.|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 7776655544332 24457778888999999999999999998875 56778899999999999999
Q ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 226 KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 226 ~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
++|...|+++.+..|.+..+|..+...|...|++++|.+.|+++.+.. +.+...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh---------
Confidence 999999999888778889999999999999999999999999999864 2222222211000 00
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 006630 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEA-DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQL 384 (638)
Q Consensus 306 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 384 (638)
. ..+. ..+..+...+ ..|++++|...|+++.+..... +..++..+...|...|++++|+..|+++.+... .+..
T Consensus 178 -~-~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 252 (368)
T 1fch_A 178 -G-AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYL 252 (368)
T ss_dssp -----------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred -h-hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHH
Confidence 0 0000 0011111112 4445555555555544432110 244444455555555555555555555444321 1344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-----------H
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPG-----------T 453 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~ 453 (638)
++..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+ .
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhh
Confidence 44555555555555555555555554432 3344455555555555555555555555554321 111 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
.+|..+..+|...|++++|..++.
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred HHHHHHHHHHHHhCChHhHHHhHH
Confidence 555566666666666666555544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.9e-17 Score=168.68 Aligned_cols=390 Identities=12% Similarity=-0.024 Sum_probs=210.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC--------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhcc-----
Q 006630 172 ITTEVFVILMRRFASARMVKKAIEVLDEMPKY--------GCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRER----- 238 (638)
Q Consensus 172 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----- 238 (638)
.....|+.+...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...|++..+-
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34566777777778888888888888776431 11223567777888888888888888877765321
Q ss_pred ---CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HHcCCHhHHHHHHHHHHHcCCC
Q 006630 239 ---FKPSLRHFTSLLYGWCKE--GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY---AQMGKMTDAFELLKEMRRKGCD 310 (638)
Q Consensus 239 ---~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~g~~ 310 (638)
.+....++..+..++... +++++|++.|++..+.. +-+...+..+..++ ...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 122345555555555543 45777888887777653 22344444444443 344666777777777666532
Q ss_pred CCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 311 PNANSYTVLIQALCR----MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTY 386 (638)
Q Consensus 311 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 386 (638)
.+..++..+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|+..+++..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 244455555444433 355667777777766653 345666777777777777777777777777765332 44455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 387 LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQ 466 (638)
Q Consensus 387 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 466 (638)
..+...+...+... .... . ..........+..++|...|++..+.+ +.+...+..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 55544442211100 0000 0 000011112234567777777776654 44455677777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcH--HHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 467 GCLIEACEYFKEMVGRGLLSAPQY--GTLKALLN-SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 467 g~~~~A~~~~~~m~~~~~~~~p~~--~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
|++++|+..|++.+.... .+.. ..+..+.. .....|++++|+..|++.++. .|+...+... ...
T Consensus 348 ~~~~~A~~~~~kaL~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~---------~~~ 414 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKEL--TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKM---------KDK 414 (472)
T ss_dssp TCHHHHHHHHHHHHHSCC--CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHH---------HHH
T ss_pred ccHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHH---------HHH
Confidence 888888888888777652 1211 11222222 233567778888888777764 4443332222 223
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+..++++.+... +.+..+|..+..++...|++++|++.++++++++|.+|.+
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a 466 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSA 466 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcH
Confidence 334444444432 3345667777777777788888888888888877777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.8e-16 Score=166.79 Aligned_cols=212 Identities=8% Similarity=-0.048 Sum_probs=122.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh------------
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG------------ 465 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~------------ 465 (638)
+.++|.+++++..+.. +.+..++..+...|.+.|++++|...|++..+.. +.+..++..+...|..
T Consensus 228 ~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~ 305 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENG 305 (472)
T ss_dssp --CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444555555444432 3344444455555555555555555555554432 2333344444333321
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HH
Q 006630 466 -------QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVY--AWTIWIH-SL 535 (638)
Q Consensus 466 -------~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~-~~ 535 (638)
.+..++|+..|++..... +.+..++..+...+...|++++|+..|+++++....+... .+..+.. .+
T Consensus 306 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~ 382 (472)
T 4g1t_A 306 MYGKRKLLELIGHAVAHLKKADEAN---DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQL 382 (472)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHC---TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhcC---CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 234678889999888876 3445567788899999999999999999998864332221 2233332 34
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHH
Q 006630 536 FSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEK 611 (638)
Q Consensus 536 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~ 611 (638)
...|++++|+..|++.++. .|+..... +..+.+..++++.++.+|+++.++ .+|...|++++|.+
T Consensus 383 ~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 383 YQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 5789999999999999865 56543322 334566778889999999999886 58999999999999
Q ss_pred HHhhhhhhhhhhhh
Q 006630 612 AKKQVDGRKRRARQ 625 (638)
Q Consensus 612 ~~~~~~~~~~~~~~ 625 (638)
.|++..+.....+.
T Consensus 452 ~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 452 DSERGLESGSLIPS 465 (472)
T ss_dssp --------------
T ss_pred HHHHHHhcCCCCCc
Confidence 99997776665543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-18 Score=173.76 Aligned_cols=247 Identities=9% Similarity=-0.047 Sum_probs=124.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 313 ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLA 392 (638)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 392 (638)
...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+...|...|++++|+..|+++.+... .+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHH
Confidence 3345666666666666666666666666553 33556666666666666666666666666665432 245555555556
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDV-SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (638)
+...|++++|...++++.+.. |+. ..+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 666666666666665555421 110 0000000 001123334444555555555
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
|+.+|+++...... .++..++..+...+...|++++|...|+++++.. +.+...|..++.+|...|++++|+..|+++
T Consensus 196 A~~~~~~al~~~p~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 196 VKELYLEAAHQNGD-MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRA 273 (365)
T ss_dssp HHHHHHHHHHHSCS-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554310 0134455555555555555555555555555442 224455555555555555555555555555
Q ss_pred HhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 552 MDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 552 ~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
++. .| +..+|..+..+|...|++++|...+++++++.|+
T Consensus 274 l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 274 LEI--QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred Hhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 543 23 2445555555555566666666666666666555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-15 Score=164.98 Aligned_cols=380 Identities=13% Similarity=0.131 Sum_probs=278.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCC--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHH
Q 006630 171 LITTEVFVILMRRFASARMVKKAIEVLDEMPKYG--CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTS 248 (638)
Q Consensus 171 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 248 (638)
..++.-....+++|...|.+.+|+++++++.-.+ +.-+....+.|+.+..+. +..+..++.++...- + ...
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~---d---~~e 1054 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY---D---APD 1054 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc---c---HHH
Confidence 3456666778888889999999999999887432 113445666677766666 445555555555422 1 344
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 249 LLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
+...+...|.+++|..+|++.. -.....+.++. ..+++++|.++.++. -+..+|..+..++.+.|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCC
Confidence 7778888999999999998852 12222233332 678899998888765 256788899999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 329 MEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 329 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
+++|...|.+. .|...|..++..+.+.|++++|+++|....+.. ++....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 377888889999999999999999998877654 23333335888888888888544332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC
Q 006630 409 MRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP 488 (638)
Q Consensus 409 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p 488 (638)
+ .++...+..+...|...|++++|..+|.... .|..+...|.+.|++++|++.+++. .
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------ny~rLA~tLvkLge~q~AIEaarKA--------~ 1248 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--------N 1248 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------HHHHHHHHHHHhCCHHHHHHHHHHh--------C
Confidence 2 4566677778888999999999999998852 8899999999999999999998876 3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLM 567 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll 567 (638)
+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+. +.|. ...|.-+.
T Consensus 1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELa 1321 (1630)
T 1xi4_A 1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELA 1321 (1630)
T ss_pred CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHH
Confidence 3468888888899999998888876543 23666777889999999999999999988774 3443 33465555
Q ss_pred HHHHh--hcCHHHHHHHHHHHHHHHH-----hccccc----chhhhhhhhhhHH
Q 006630 568 RGLKK--LYNRQIAAEITEKVRKMAA-----ERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 568 ~~~~~--~g~~~~A~~~~~~~~~~~p-----~~~~~~----~~y~~~g~~~~A~ 610 (638)
..+.+ .++..++.+.+..-....| +++.++ -+|.+.|+|+.|.
T Consensus 1322 iLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1322 ILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 55554 4677777777777776665 444443 5788899999888
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-17 Score=164.39 Aligned_cols=285 Identities=9% Similarity=-0.033 Sum_probs=157.7
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK 360 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 360 (638)
+..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...|+++.+.. +.+..++..+...|..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 33444445555555555555555544321 234444444555555555555555555544432 2234444444444555
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHHH
Q 006630 361 SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVV-IR-LACKLGELKEAV 438 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~ 438 (638)
.|++++|++.++++.+.... +...+..+... .|+......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHH
Confidence 55555555555544443211 11011000000 0000011111 11 255667777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006630 439 NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVT 518 (638)
Q Consensus 439 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 518 (638)
..++++.+.. +.+...+..+...+...|++++|+.+++++.... +.+..++..+...+...|++++|...++++.+
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 159 TLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR---PDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777776654 4466677777777777777777777777777665 34566677777777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 006630 519 KGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-----------QPDTFAKLMRGLKKLYNRQIAAEITEKVR 587 (638)
Q Consensus 519 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 587 (638)
.. +.+...|..+..+|...|++++|...++++++....+ +...|..+..++...|+++.|..++++++
T Consensus 235 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 235 IN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred cC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 52 2246667777777777777777777777776532110 25567777777777777777777777777
Q ss_pred HHHHhccc
Q 006630 588 KMAAERQI 595 (638)
Q Consensus 588 ~~~p~~~~ 595 (638)
+..|++..
T Consensus 314 ~~~~~~~~ 321 (327)
T 3cv0_A 314 EPFAKEFG 321 (327)
T ss_dssp HHHHHHTT
T ss_pred Hhcchhhh
Confidence 77666543
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=173.45 Aligned_cols=239 Identities=13% Similarity=0.122 Sum_probs=74.3
Q ss_pred hcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV 265 (638)
Q Consensus 186 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 265 (638)
+.|++++|.++++++. .| .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~----~~--~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----EP--AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----Ch--HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3455666666666652 12 36666666666666666666666432 3555666666666666666666665
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006630 266 LVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE 345 (638)
Q Consensus 266 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 345 (638)
++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+.+.|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------ 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------ 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence 5554442 3445556666666666666666665553 245556666666666666666666666654
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 346 ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVI 425 (638)
Q Consensus 346 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 425 (638)
..|..++.++.+.|++++|++.++.+ .++.+|..++.+|...|+++.|...... +..++.....++
T Consensus 149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv 214 (449)
T 1b89_A 149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELI 214 (449)
T ss_dssp ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHH
T ss_pred ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHH
Confidence 14666666666666666666666655 1556666666666666666666443322 122333344556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 426 RLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465 (638)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 465 (638)
..|.+.|++++|..+++...... +-....|+-|...|++
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 66666666666666666665544 4445566666555555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-14 Score=160.71 Aligned_cols=339 Identities=11% Similarity=0.128 Sum_probs=231.9
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
...+...|.+++|..+|++.. ......+.++. ..|++++|.++.+++. +..+|..+..++...|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHH
Confidence 445556677777777777642 12222333332 5567777777777553 5677888888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+|.+.|.+. -|...|..++.+|.+.|++++|.+.+....+.. ++....+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---- 1190 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----
Confidence 888888653 466777788888888888888888888777653 33333445888888888877533332
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
+ .++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++. .+..+
T Consensus 1191 ~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A 1191 N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence 1 456667777888888888888888888874 36778888888888888888888765 34577
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
|..+..+|...|++..|......+ ..+...+..++..|...|.+++|+.+++..+... +-....|..+...+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le---raH~gmftELaiLy 1324 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILY 1324 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---hhHhHHHHHHHHHH
Confidence 777777888888888887766542 3455677788889999999999999998887654 24444555555555
Q ss_pred H--HcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHccCCHHHHHHH-------------HHHHHhCCCCCC
Q 006630 501 L--RAQKVEMAKDVWSCIVTKGCEL------NVYAWTIWIHSLFSNGHVKEACSY-------------CLDMMDADVMPQ 559 (638)
Q Consensus 501 ~--~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~~~~p~ 559 (638)
+ +-+++.++.++|..-.. ++| +...|.-++..|.+.|+++.|+.. |.+.+. ...|
T Consensus 1325 aKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n 1400 (1630)
T 1xi4_A 1325 SKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVAN 1400 (1630)
T ss_pred HhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--cccc
Confidence 5 44566666666664433 222 466789999999999999988833 111111 1345
Q ss_pred HHHHHHHHHHHHhhc
Q 006630 560 PDTFAKLMRGLKKLY 574 (638)
Q Consensus 560 ~~t~~~ll~~~~~~g 574 (638)
...|...+.-|...+
T Consensus 1401 ~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1401 VELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHHHHHHHHHHhhC
Confidence 666666666665433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-18 Score=170.48 Aligned_cols=275 Identities=12% Similarity=-0.033 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 006630 243 LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQA 322 (638)
Q Consensus 243 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 322 (638)
...|..+...+.+.|++++|...|+++.+.. +.+..+|..+...|...|++++|.+.|+++.+.. +.+..++..+...
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3345555566666666666666666655543 3345555555555666666666666665555542 2245555555666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSGCEADV-VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
|...|++++|...|+++.+.. |+. ..+..+. .....+..+...+...|++++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~ 195 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEG 195 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHH
Confidence 666666666666666555431 111 0010000 011122233333444444444
Q ss_pred HHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 402 a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
|.++++++.+.... .+..++..+...|.+.|++++|+..|+++.+.. +.+..+|..+...|...|++++|+..|++++
T Consensus 196 A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 196 VKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444433211 134445555555555555555555555555443 3344555555555555555555555555555
Q ss_pred hCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 006630 481 GRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-----------ELNVYAWTIWIHSLFSNGHVKEACSYCL 549 (638)
Q Consensus 481 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~ 549 (638)
+.. +.+..++..+..+|.+.|++++|...|+++++... ..+...|..+..++...|+.+.+.....
T Consensus 275 ~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 275 EIQ---PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHC---TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred hcC---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 543 23345555555555555666666666555554310 0024556666666666677666665544
Q ss_pred H
Q 006630 550 D 550 (638)
Q Consensus 550 ~ 550 (638)
+
T Consensus 352 ~ 352 (365)
T 4eqf_A 352 G 352 (365)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-17 Score=161.70 Aligned_cols=279 Identities=10% Similarity=-0.001 Sum_probs=192.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
..+..+...+...|++++|..+|+++.+.. +.+...|..+...+...|++++|...++++.+... .+..++..+...+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence 344555666666667777777766666543 23555666666666666666666666666665422 2444555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHhcCCHHH
Q 006630 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVM-VH-GFLGQGCLIE 471 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~-~~~~~g~~~~ 471 (638)
...|++++|.+.++.+.+.. +.+...+..+... .|+......+ .. .+...|++++
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~ 156 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRE 156 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHH
Confidence 55555555555555555432 1111111111000 0111111122 22 3677899999
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
|+.+++++.... +.+..++..+...+...|++++|...++++.+.. +.+...|..+..++...|++++|+..++++
T Consensus 157 A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 157 CRTLLHAALEMN---PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999876 4577889999999999999999999999998873 336788999999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh------------ccccc----chhhhhhhhhhHHHHHhh
Q 006630 552 MDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE------------RQITF----KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 552 ~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~------------~~~~~----~~y~~~g~~~~A~~~~~~ 615 (638)
++.. ..+...+..+...+...|++++|.+.++++++..|+ ++..+ .+|...|++++|.+++++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 8753 335778999999999999999999999999999999 55553 688999999999999998
Q ss_pred hhhhhhh
Q 006630 616 VDGRKRR 622 (638)
Q Consensus 616 ~~~~~~~ 622 (638)
..+..++
T Consensus 312 ~l~~~~~ 318 (327)
T 3cv0_A 312 NVEPFAK 318 (327)
T ss_dssp CSHHHHH
T ss_pred HHHhcch
Confidence 6555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-17 Score=163.54 Aligned_cols=281 Identities=12% Similarity=0.123 Sum_probs=89.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (638)
+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+
T Consensus 15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4455666666665551 123555566666666666666666643 234445555666666666666666
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 006630 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309 (638)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 309 (638)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 655444432 3334555566666666666666555553 245556666666666666666666666544
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 310 DPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHI 389 (638)
Q Consensus 310 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 389 (638)
..|..++.++.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|...... +...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence 245666666666666666666666551 556666666666666666666333222 11222233345
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHH
Q 006630 390 MLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKL--GELKEAVNVWNEMEAASLSP------GTDSFVVMVH 461 (638)
Q Consensus 390 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~li~ 461 (638)
+..|.+.|.++++..+++...... +.....|+-|.-+|++- +++.+.++.|.. ..+++| +...|..+..
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHH
Confidence 556666666666666666655443 44455555555555543 233333333321 111122 2335666666
Q ss_pred HHHhcCCHHHHHH
Q 006630 462 GFLGQGCLIEACE 474 (638)
Q Consensus 462 ~~~~~g~~~~A~~ 474 (638)
.|.+.++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 6666666666654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-15 Score=147.82 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 279 VVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDP-NANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISG 357 (638)
Q Consensus 279 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 357 (638)
.++..+...+...++.++|.+.++++...+..| +...+..+...|...|++++|++.|++ +.+...+..++..
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~ 139 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQI 139 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHH
Confidence 333334444444444444444444443333222 222333333444444444444444443 1233444444444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 358 FCKSRKIDRCYEILDSMIQRGILPNQLTY---LHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..+|.+.|++
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~ 216 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRW 216 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCH
Confidence 444444444444444444432 221100 011111222344555555555554442 34455555555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE-ACEYFKEMVGRG 483 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~ 483 (638)
++|+..|+++.+.+ +.+..++..++..+...|+..+ +.++++++.+..
T Consensus 217 ~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 217 EAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 55555555555443 3444555555555555555543 345555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=179.24 Aligned_cols=152 Identities=20% Similarity=0.275 Sum_probs=120.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006630 206 EPDEFVFGCLLDALCKNSSVKEAAKLFDEMRE----RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVY 281 (638)
Q Consensus 206 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 281 (638)
..-..+||+||++||+.|++++|.++|++|.+ +..||++|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 34457899999999999999999999988753 47899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCC-HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHH
Q 006630 282 NNLLSGYAQMGK-MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEAD------VVTYTTL 354 (638)
Q Consensus 282 ~~ll~~~~~~g~-~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~------~~~~~~l 354 (638)
|++|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.+- ++..+++ ..+..|+ ..+...|
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~v----L~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV----LKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHH----HHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHH----HHHHHHh-CcccCCCCCCcccccchHHH
Confidence 999999999987 47889999999999999999999999876665433 3333333 2233333 3444556
Q ss_pred HHHHHhcC
Q 006630 355 ISGFCKSR 362 (638)
Q Consensus 355 i~~~~~~g 362 (638)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 66665554
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=179.38 Aligned_cols=123 Identities=17% Similarity=0.254 Sum_probs=102.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHh
Q 006630 239 FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD---AGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANS 315 (638)
Q Consensus 239 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 315 (638)
......+||+||++||+.|++++|.++|.+|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567889999999999999999988877764 47888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 316 YTVLIQALCRMEK-MEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 316 ~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
||+||+++|+.|+ .++|.++|++|.+.|+.||.++|+.++.++.+.
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 8888888888887 477888888888888888888888888765543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-15 Score=141.97 Aligned_cols=227 Identities=11% Similarity=0.066 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHH
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGC--VPD----VSNYN 422 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 422 (638)
..|..+...+...|++++|+..|+++.+.. .+..++..+...+...|++++|.+.+..+.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 344555555556666666666666655554 4555555556666666666666666665544310 111 46667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 502 (638)
.+...|.+.|++++|...|+++.+.. |+. ..+...|++++|+..++++.... +.+...+..+...+..
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN---PEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHH
Confidence 77777788888888888888777643 443 34555677888888888888765 3456677778888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHH
Q 006630 503 AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEI 582 (638)
Q Consensus 503 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~ 582 (638)
.|++++|...|+++++.. +.+...|..+..+|...|++++|+..++++++.. ..+...|..+...+...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 899999999999888763 3367788888999999999999999999888753 33477788889999999999999999
Q ss_pred HHHHHHHHH
Q 006630 583 TEKVRKMAA 591 (638)
Q Consensus 583 ~~~~~~~~p 591 (638)
++++++++|
T Consensus 230 ~~~a~~~~~ 238 (258)
T 3uq3_A 230 LDAARTKDA 238 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhCh
Confidence 999999993
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.9e-16 Score=142.57 Aligned_cols=196 Identities=13% Similarity=0.002 Sum_probs=153.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
+++...+..+...+.+.|++++|...|++..+.+ +.+...|..+...+.+.|++++|+..|++.++.. +.+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 4566777888888888999999999999888776 6677888888888889999999999999888876 35667788
Q ss_pred HHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006630 495 ALLNSLLRA-----------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTF 563 (638)
Q Consensus 495 ~ll~~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~ 563 (638)
.+...+... |++++|+..|+++++.... +...|..+..+|...|++++|+..|+++++.. .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 888888888 9999999999999887322 57788889999999999999999999998866 778889
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~ 617 (638)
..+..++...|++++|+..++++++.+|+++.++ .+|...|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999998875 57889999999999988754
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-14 Score=135.72 Aligned_cols=223 Identities=10% Similarity=0.043 Sum_probs=132.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI--LPN----QLTYLH 388 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~----~~t~~~ 388 (638)
.+..+...+...|++++|...|++..+.. .+...|..+...|...|++++|+..+++..+... .++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444445555555555555544443 3444444455555555555555555554443211 111 344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 389 IMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468 (638)
Q Consensus 389 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (638)
+...+...|++++|...++.+.+. .|+. ..+.+.|++++|...++++.... +.+...|..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555555555555555555543 2221 23555566777777777776653 3345566777777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYC 548 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 548 (638)
+++|+..|+++.... +.+..++..+...+...|++++|...++++++.. +.+...|..+..++...|++++|...+
T Consensus 155 ~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA---PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777777777777665 3456667777777777777777777777777653 224667777777777788888888777
Q ss_pred HHHHh
Q 006630 549 LDMMD 553 (638)
Q Consensus 549 ~~m~~ 553 (638)
+++++
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-14 Score=150.22 Aligned_cols=376 Identities=12% Similarity=0.060 Sum_probs=201.0
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC--
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV---KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG-- 257 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-- 257 (638)
.+.+.|++++|+++|++..+.| +...+..|..+|...|+. ++|...|++..+. +...+..|...+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------CHHHHHHHHHTC--C
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCC
Confidence 3344455555555555544433 122233344444444444 5555555555433 3444444444333333
Q ss_pred ---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH---HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC---
Q 006630 258 ---KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD---AFELLKEMRRKGCDPNANSYTVLIQALCRMEK--- 328 (638)
Q Consensus 258 ---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~--- 328 (638)
++++|...|++..+.|. ++ .+..|...|...+..+. +.+.+......| +......|...|...+.
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE-GN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-SS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence 45566666666665542 22 44445555554443222 333333333333 23344555566666553
Q ss_pred -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHH
Q 006630 329 -MEEANRAFVEMERSGCEADVVTYTTLISGFCKSR---KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK----EELE 400 (638)
Q Consensus 329 -~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----g~~~ 400 (638)
.+.+..++..... .++..+..|...|...| +.++|++.|+...+.|.. +...+..+...|... ++.+
T Consensus 160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHH
Confidence 3333444443332 23336666666677777 777777777777776543 444444455555443 5777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 006630 401 ECVELMGEMRKIGCVPDVSNYNVVIRL-A--CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG-----CLIEA 472 (638)
Q Consensus 401 ~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~A 472 (638)
+|.+.|+... . -+...+..|..+ | ...+++++|...|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 2 344455555555 3 35678888888888877765 4566666776666 44 78888
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLR----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKEA 544 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 544 (638)
+.+|++.. .| +......|...|.. ..++++|...|++..+.| +......|...|.. ..+.++|
T Consensus 307 ~~~~~~Aa-~g-----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 307 EAHFEKAV-GR-----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHTTT-TT-----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHh-CC-----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 88888776 43 33344455555554 337888888888887765 34455556666653 4578889
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
..+|+...+.| .++.......+......++.++|..++++..+..+..
T Consensus 378 ~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~~ 425 (452)
T 3e4b_A 378 YVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAARGTL 425 (452)
T ss_dssp HHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccc
Confidence 99888888766 3444333333333334467788888888888877764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-15 Score=143.48 Aligned_cols=243 Identities=8% Similarity=-0.047 Sum_probs=153.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006630 361 SRKIDRCYEILDSMIQRGILP---NQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437 (638)
Q Consensus 361 ~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 437 (638)
.|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 355666666666666542111 23455555666666666666666666666543 34566667777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
...|+++.+.. +.+...|..+...|...|++++|+..|+++.+.. |+.......+..+...|++++|...+++..
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 77777776654 4456677777777777777777777777777654 332233333444456677778887777766
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
... +++...| .++..+...++.++|+..++++.+. .|+ ...|..+...+...|++++|...++++++.+|+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 552 2233333 3566666777777777777776543 222 456777777888888888888888888888876
Q ss_pred ccccc-chhhhhhhhhhHHHHH
Q 006630 593 RQITF-KMYKRRGERDLKEKAK 613 (638)
Q Consensus 593 ~~~~~-~~y~~~g~~~~A~~~~ 613 (638)
+...+ ..+...|++++|.+.+
T Consensus 248 ~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TCHHHHHHHHHHHHHHHC----
T ss_pred hHHHHHHHHHHHHHHHhhHHHH
Confidence 65544 4677778888877765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.4e-12 Score=137.24 Aligned_cols=432 Identities=8% Similarity=-0.008 Sum_probs=286.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHhchhCC-CCCCHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM---VKKAIEVLDEMPKYG-CEPDEF 210 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~g-~~~~~~ 210 (638)
+.|...|..++..+.+.+.++.+..+|+++....|. ....|..-+..-.+.+. ++.+.++|++.+... .+|++.
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~--~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~ 140 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPL--MANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLS 140 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHH
Confidence 568888888888888888888888888888888764 67778888887777787 888888888887653 137888
Q ss_pred HHHHHHHHHHhCCCH--------HHHHHHHHHHhcc----CCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSV--------KEAAKLFDEMRER----FKPSLRHFTSLLYGWCK---------EGKLVEAKYVLVQM 269 (638)
Q Consensus 211 ~~~~li~~~~~~g~~--------~~A~~~~~~~~~~----~~~~~~~~~~li~~~~~---------~g~~~~A~~~~~~m 269 (638)
.|..-+....+.++. +...++|+..... .+.+...|...+..... .++++.+..+|++.
T Consensus 141 LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 141 LWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 887777766555443 3344677765432 23345677777765442 34566777788777
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC--
Q 006630 270 KDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS--GCE-- 345 (638)
Q Consensus 270 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-- 345 (638)
+......-..+|......-...+ ...+.+++.+ ...+++.|...+.++... ++.
T Consensus 221 L~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 221 LCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp TTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 74211111223322211111101 0111111111 011233344444433211 110
Q ss_pred -------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006630 346 -------------A-----D---VVTYTTLISGFCKSR-------KIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397 (638)
Q Consensus 346 -------------~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 397 (638)
| + ...|...+.---..+ ..+.+..+|++.+.... -+...|...+.-+...|
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~ 357 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKN 357 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHS
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcC
Confidence 1 0 244555554332222 12345677888877533 36777877788788888
Q ss_pred CHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---------CCCC------------HHH
Q 006630 398 ELEECV-ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS---------LSPG------------TDS 455 (638)
Q Consensus 398 ~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---------~~p~------------~~~ 455 (638)
+.++|. ++++..... ++.+...+-..+...-+.|++++|.++|+.+.+.. -.|+ ...
T Consensus 358 ~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~v 436 (679)
T 4e6h_A 358 TDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436 (679)
T ss_dssp CCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHH
Confidence 888896 999998874 46677778888888999999999999999887531 0132 246
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGR-GLLSAPQYGTLKALLNSLLRA-QKVEMAKDVWSCIVTKGCELNVYAWTIWIH 533 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~~p~~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 533 (638)
|...+....+.|..+.|..+|.++.+. + ......|...+..-.+. ++.+.|..+|+..++. ++-+...|...++
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~---~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~ 512 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKK---LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLD 512 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGG---GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHH
Confidence 888888888899999999999999887 3 23334454433333344 4589999999999887 4446777888999
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 534 SLFSNGHVKEACSYCLDMMDADVMP--QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.....|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+..+.+++.+..|+++..
T Consensus 513 fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 513 FLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHH
Confidence 8889999999999999998753222 23568888888889999999999999999999997654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-14 Score=140.16 Aligned_cols=240 Identities=7% Similarity=0.018 Sum_probs=157.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVP--DVSNYNVVIRLACK 430 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~ 430 (638)
.....+...|++++|+..|++..+.... +...+..+...+...|++++|.+.++.+.+....+ ....|..+...|..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444455555566666655555554321 23345555555556666666666666555521111 12336666777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 510 (638)
.|++++|+..|++..+.. +.+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...+++++|.
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776654 4455677777888888888888888887777664 345556666663444556888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhhcCHHHHH
Q 006630 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDA-DVMPQ------PDTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-~~~p~------~~t~~~ll~~~~~~g~~~~A~ 580 (638)
+.|+++++.. +.+...+..+..++...|+ +++|...++++++. .-.|+ ...|..+...+...|++++|.
T Consensus 163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8888887762 2246667777777777777 77788888777652 11233 246777888888899999999
Q ss_pred HHHHHHHHHHHhcccccc
Q 006630 581 EITEKVRKMAAERQITFK 598 (638)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~ 598 (638)
+.++++++++|+++.+..
T Consensus 242 ~~~~~al~~~p~~~~a~~ 259 (272)
T 3u4t_A 242 AAWKNILALDPTNKKAID 259 (272)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCccHHHHHH
Confidence 999999999999887643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=133.84 Aligned_cols=199 Identities=18% Similarity=0.091 Sum_probs=118.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
++...+..+...+.+.|++++|...|++....+|. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ--DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556666777777777777777777777766654 56666667777777777777777777766653 3455666666
Q ss_pred HHHHHhC-----------CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 216 LDALCKN-----------SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNL 284 (638)
Q Consensus 216 i~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 284 (638)
..+|.+. |++++|+..|++..+..|.+...|..+...|...|++++|+..|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 666666666666665555566666666666666666666666666666554 455566666
Q ss_pred HHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 285 LSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 285 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
..++...|++++|...++...+.. +.+...+..+...+.+.|++++|...|++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 666666666666666666665542 2244555556666666666666666655543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.62 E-value=5.8e-14 Score=141.57 Aligned_cols=241 Identities=10% Similarity=0.072 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEE-LEECVELMGEMRKIGCVPDVSNYNVVIR 426 (638)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~ 426 (638)
...|+.+...+.+.|++++|+..+++.++.... +...|..+...+...|+ +++|+..++++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 355666777777888888888888888875433 56777777888888886 888888888888765 557788888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-cCC
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR-AQK 505 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~g~ 505 (638)
+|.+.|++++|+..|+++.+.+ +-+...|..+..++...|++++|+..|+++++.. +.+...|..+..++.. .|.
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCc
Confidence 8999999999999999998876 6678899999999999999999999999999887 4677888888888888 566
Q ss_pred HHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc----
Q 006630 506 VEMA-----KDVWSCIVTKGCELNVYAWTIWIHSLFSNG--HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY---- 574 (638)
Q Consensus 506 ~~~A-----~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---- 574 (638)
.++| +..|++++..... +...|+.+..++...| ++++|++.+.++ +. ...+...+..++..|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 5777 5888888886322 6778999999999988 689999999887 32 2345677888888888874
Q ss_pred ----C-HHHHHHHHHHH-HHHHHhccccc
Q 006630 575 ----N-RQIAAEITEKV-RKMAAERQITF 597 (638)
Q Consensus 575 ----~-~~~A~~~~~~~-~~~~p~~~~~~ 597 (638)
+ +++|.++++++ ++++|.+...+
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~DP~r~~~w 356 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKDTIRKEYW 356 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhCchhHHHH
Confidence 3 58999999999 99999877664
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=131.33 Aligned_cols=208 Identities=13% Similarity=0.015 Sum_probs=144.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
.+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 34444455555555555555555555442 3455566666677777777777777777776654 445667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHH
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEA 544 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 544 (638)
..|++++|+++|+++...+. .+.+...+..+...+...|++++|...++++.+.. +.+...|..++..+...|++++|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTL-YPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHhCcc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 78888888888877776211 02345566777777888888888888888877763 22567777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 545 CSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 545 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..+++++++.. ..+...+..+...+...|++++|.++++++++..|+++...
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 88888877542 34566677777788888888888888888888888876653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-14 Score=135.36 Aligned_cols=210 Identities=16% Similarity=0.135 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (638)
.++..+...+...|++++|..+++++.+.. +.+...+..+...|.+.|++++|...|+++.+.. +.+...+..+...+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344455555566666666666666665543 4456666667777777777777777777776654 44667777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
...|++++|+++|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 78888888888888777765 3456677777777888888888888888877653 2356777788888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchh
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
|+..++++++.. ..+..++..+...+...|++++|.+.++++++.+|+++..+..+
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 888888877642 33466788888888888888888888888888888877765433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-12 Score=125.52 Aligned_cols=230 Identities=10% Similarity=0.013 Sum_probs=164.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEK----KEELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|...+++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455556666666666666666666666652 234555556666666 677777777777766654 556666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 423 VVIRLACK----LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG----QGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~ 150 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----DGDGCT 150 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----cHHHHH
Confidence 67777777 777788888877777654 56677777777777 788888888888887765 233555
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 495 ALLNSLLR----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 495 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
.+...+.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ | ...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 66666776 788888888888887753 56677778888888 888888888888887753 2 5667777
Q ss_pred HHHHHh----hcCHHHHHHHHHHHHHHHHhcccc
Q 006630 567 MRGLKK----LYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 567 l~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...+.. .+++++|.+.++++++.+|+++..
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~ 258 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD 258 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHH
Confidence 888887 888899999999998888876543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-13 Score=143.76 Aligned_cols=378 Identities=10% Similarity=0.017 Sum_probs=248.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMV---KKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.+...+.+.|++++|+.+|++..+.+ +...+..+...|...|+. ++|+..|++..+. ++..+..|..++
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 46677888999999999999988764 223455566666777877 8999999988753 566677777756
Q ss_pred HhCC-----CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 220 CKNS-----SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV---EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291 (638)
Q Consensus 220 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 291 (638)
...| ++++|...|++...... ...+..|...|...+..+ ++.+.+......| +...+..+...|...
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGE--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTC--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 6655 78899999998876433 337788888888766544 4555566655544 345667788888888
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCH
Q 006630 292 GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRME---KMEEANRAFVEMERSGCEADVVTYTTLISGFCKS----RKI 364 (638)
Q Consensus 292 g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----g~~ 364 (638)
+.++.+......+.+.-...+...+..|...|.+.| +.++|++.|++..+.| .++...+..|...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 865555544333333222224448888999999999 9999999999999887 55666666777777654 799
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHH
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLA-H--EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-----ELKE 436 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~ 436 (638)
++|+.+|+... .| +...+..+... + ...++.++|.+.|++..+.| +...+..|..+|. .| ++++
T Consensus 234 ~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 43 44556666655 3 56899999999999999876 6777778888887 55 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH----cCCHHH
Q 006630 437 AVNVWNEMEAASLSPGTDSFVVMVHGFLG----QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR----AQKVEM 508 (638)
Q Consensus 437 A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~ 508 (638)
|...|++.. . .+...+..|...|.. ..++++|..+|++..+.|. |.. ...|...|.. ..+.++
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A--~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSA--DFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTH--HHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHH--HHHHHHHHHhCCCCCCCHHH
Confidence 999999887 3 456778888877776 4499999999999999873 543 3345555553 458999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 509 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
|...|+...+.|.. +.......+......++..+|..+.++..
T Consensus 377 A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 377 AYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp HHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 99999999887632 22222222222223345556666655543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.9e-13 Score=126.18 Aligned_cols=210 Identities=10% Similarity=-0.005 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (638)
..+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344455555555666666666665555542 3345566666666777777777777777766654 44566777777777
Q ss_pred Hhc-CCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 464 LGQ-GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 464 ~~~-g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
... |++++|+.+|+++...+. .+.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPT-YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTT-CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHH
Confidence 777 777777777777776211 12335566677777777788888888877777652 224667777777788888888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+|..+++++++.....+...+..+...+...|+.+.|..+++.+.+..|+++...
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888887776642113555666666666777888888888888877777776553
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-13 Score=125.74 Aligned_cols=201 Identities=12% Similarity=0.070 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+..+|..+...+...|++++|...|+++....|. +...+..+...+...|++++|+..++++.+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK--NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4455666666666666666666666666665543 45555556666666666666666666655442 33455555555
Q ss_pred HHHHhC-CCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 217 DALCKN-SSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 217 ~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
..|... |++++|...|+++.. ..+.+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC
Confidence 566666 666666666655554 223334555555555555555555555555555432 2234445555555555555
Q ss_pred HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 294 MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 294 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+++|.+.++.+.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 555555555554432212344444444444555555555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.9e-13 Score=127.39 Aligned_cols=200 Identities=15% Similarity=0.045 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
..+|..+...+...|++++|...|+++....|. +...+..+...+...|++++|++.++++.+.. +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS--SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 566778888888889999999999888877654 56777888888888888888888888877654 346677778888
Q ss_pred HHHhCCCHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh
Q 006630 218 ALCKNSSVKEAAKLFDEMRE--RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT 295 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 295 (638)
.|...|++++|.+.|+++.. ..+.+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888766 445566777777777888888888888887777654 335666777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 296 DAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 296 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
+|...++.+.+.. +.+...+..+...+.+.|+.++|.+.++++.+.
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777776643 235556666777777777777777777777665
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-12 Score=134.61 Aligned_cols=443 Identities=11% Similarity=0.056 Sum_probs=296.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC---HHHHH
Q 006630 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS---VKEAA 229 (638)
Q Consensus 153 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~ 229 (638)
...+.+..|++....+|. +..+|..++..+.+.+.++.+..+|+++... ++.....|...+..-.+.|. ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~np~--d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPT--DIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHCcC--CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 345566677777777764 8999999999999999999999999999876 46677889888999888888 99999
Q ss_pred HHHHHHhccCC--CCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-CHHHHHHHHHHHH-------
Q 006630 230 KLFDEMRERFK--PSLRHFTSLLYGWCKEGKL--------VEAKYVLVQMKD-AGF-EP-DIVVYNNLLSGYA------- 289 (638)
Q Consensus 230 ~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p-~~~~~~~ll~~~~------- 289 (638)
.+|++.....+ |++..|...+....+.++. +...++|+..+. .|. .+ +...|...+....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 99999988763 8999999988877766654 334467776554 465 44 3567777776543
Q ss_pred --HcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 290 --QMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRC 367 (638)
Q Consensus 290 --~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A 367 (638)
..++++.+.++|+.++......-..+|......--..+. ..+.+++.+. ..+++.|
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~A 261 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNA 261 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHH
Confidence 234567778888887753111111223222111111010 0122222111 1123333
Q ss_pred HHHHHHHHHC--CCC---------------C-----C---HHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCC
Q 006630 368 YEILDSMIQR--GIL---------------P-----N---QLTYLHIMLAHEKKE-------ELEECVELMGEMRKIGCV 415 (638)
Q Consensus 368 ~~~~~~m~~~--~~~---------------p-----~---~~t~~~ll~~~~~~g-------~~~~a~~~~~~~~~~~~~ 415 (638)
...+.++... ++. | + ...|...+.---..+ ..+.+..+|+++... ++
T Consensus 262 r~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p 340 (679)
T 4e6h_A 262 RSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VC 340 (679)
T ss_dssp HHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cC
Confidence 3434332211 110 1 1 122333333222221 134456778888765 36
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CCC
Q 006630 416 PDVSNYNVVIRLACKLGELKEAV-NVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGL-------LSA 487 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~~~ 487 (638)
.+...|-..+..+...|+.++|. .+|++.... ++.+...|...+......|++++|.++|+.++.... ...
T Consensus 341 ~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~ 419 (679)
T 4e6h_A 341 FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDD 419 (679)
T ss_dssp TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 68888988899889999999997 999999875 366777788889999999999999999999986410 001
Q ss_pred C------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhC
Q 006630 488 P------------QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG-HVKEACSYCLDMMDA 554 (638)
Q Consensus 488 p------------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~ 554 (638)
| ...+|...++...+.|+++.|+.+|..+++.........|...+..-.+.| +.+.|.++|+..++.
T Consensus 420 p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 420 PTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred CcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3 234678888888899999999999999987511223444544444444444 589999999999875
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh---ccccc----chhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE---RQITF----KMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
..-+...|...+......|+.+.|+.+++++++..|+ ...++ +.-...|+.+.+.++.+++.+..+..
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 2335666778888888889999999999999998873 33444 34456799999999999977766653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.6e-13 Score=129.91 Aligned_cols=244 Identities=10% Similarity=0.018 Sum_probs=174.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILP--NQLTYLHIMLA 392 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~ 392 (638)
.+......+...|++++|...|++..+.. +.+...|..+...|...|++++|+..+++..+.+..| ...++..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 34455666777777777777777777653 2234466677777777777777777777777633222 23346777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 393 HEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 472 (638)
+...|++++|.+.++...+.. +.+..++..+...|...|++++|...|++..+.. +.+...|..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888777654 4466778888888888999999999998888764 55667777777344445589999
Q ss_pred HHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHc-CCCCC------HHHHHHHHHHHHccCCHH
Q 006630 473 CEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK---VEMAKDVWSCIVTK-GCELN------VYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 473 ~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~-~~~p~------~~~~~~li~~~~~~g~~~ 542 (638)
+..|+++.+.. +.+...+..+...+...|+ +++|...++++.+. ...|+ ...|..+...|...|+++
T Consensus 162 ~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 162 DSSFVKVLELK---PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHS---TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhC---ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 99999988876 3456677777777887787 88888888888765 11233 256778888999999999
Q ss_pred HHHHHHHHHHhCCCCCC-HHHHHHH
Q 006630 543 EACSYCLDMMDADVMPQ-PDTFAKL 566 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~-~~t~~~l 566 (638)
+|...|+++++. .|+ ...+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHhc--CccHHHHHHHh
Confidence 999999998865 454 3334433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-13 Score=135.27 Aligned_cols=234 Identities=9% Similarity=0.046 Sum_probs=192.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM-VKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
+..+|+.+..++.+.|++++|+..|++....+|. +..+|+.+...+...|+ +++|+..|+++++.. +.+..+|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 4567888889999999999999999999999876 78889999999999997 999999999998875 4578899999
Q ss_pred HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCH
Q 006630 216 LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ-MGKM 294 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~ 294 (638)
..++.+.|++++|+..|+++....|.+...|..+..++.+.|++++|+..|+++++.. +-+...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999988888899999999999999999999999999999875 4577889999999988 5555
Q ss_pred hHH-----HHHHHHHHHcCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----
Q 006630 295 TDA-----FELLKEMRRKGCDPNANSYTVLIQALCRME--KMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR----- 362 (638)
Q Consensus 295 ~~a-----~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----- 362 (638)
++| ++.+++.++.... +...|+.+...+.+.| ++++|.+.+.++ +.. +.+...+..+...|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhccccc
Confidence 777 4777777775332 5677888888888777 578888888777 332 445677778888887764
Q ss_pred ----CHHHHHHHHHHH-HHC
Q 006630 363 ----KIDRCYEILDSM-IQR 377 (638)
Q Consensus 363 ----~~~~A~~~~~~m-~~~ 377 (638)
..++|+++|+++ .+.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEK 348 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHh
Confidence 247888888887 443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-14 Score=134.85 Aligned_cols=223 Identities=13% Similarity=-0.009 Sum_probs=144.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQL--ITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (638)
..|++++|+..|+++....+.. .+..++..+...+...|++++|+..|+++.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 4467778888887777653211 134566677777777778888877777777653 3456777777777777777777
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 006630 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 228 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 307 (638)
|...|++.....|.+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 777777777666666777777777777777777777777777765 344334444444555667777777777666654
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 308 GCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCE---ADVVTYTTLISGFCKSRKIDRCYEILDSMIQR 377 (638)
Q Consensus 308 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 377 (638)
. +++...+ .++..+...++.++|...+.+....... .+...|..+...|...|++++|...|++..+.
T Consensus 174 ~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 174 S-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp S-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2233333 3555666666677777777666543100 01355566666666666666666666666654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.8e-13 Score=129.49 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=120.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
....|..+...+...|++++|...|+++....|. +...+..+...+...|++++|+..++++.+.. +.+..++..+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE--DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 4455666777777778888888888777776554 56667777777777777777777777776553 34566677777
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
..|...|++++|...|+++.+..+.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777777766556666777777777777777777777777766543 3355566666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERS 342 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 342 (638)
|.+.++++.+.. +.+..++..+...|.+.|++++|...|+++.+.
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 666666665542 224555666666666666666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-11 Score=119.75 Aligned_cols=224 Identities=12% Similarity=0.033 Sum_probs=105.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHcCCCCCHHhHH
Q 006630 242 SLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ----MGKMTDAFELLKEMRRKGCDPNANSYT 317 (638)
Q Consensus 242 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~ 317 (638)
+..++..+...|...|++++|...|++..+. -+..++..+...|.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444444444555555555555555554442 233344444444444 455555555555544442 344444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006630 318 VLIQALCR----MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK----SRKIDRCYEILDSMIQRGILPNQLTYLHI 389 (638)
Q Consensus 318 ~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 389 (638)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 44444544 555555555555554432 44444444444544 455555555555544433 23333344
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 390 MLAHEK----KEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK----LGELKEAVNVWNEMEAASLSPGTDSFVVMVH 461 (638)
Q Consensus 390 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~ 461 (638)
...+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 444443 444444444444444432 23344444444444 455555555555544432 1334444444
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCC
Q 006630 462 GFLG----QGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 462 ~~~~----~g~~~~A~~~~~~m~~~~ 483 (638)
.|.. .+++++|++.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4444 455555555555554443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.2e-13 Score=120.50 Aligned_cols=174 Identities=11% Similarity=0.047 Sum_probs=150.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHH
Q 006630 416 PDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKA 495 (638)
Q Consensus 416 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ 495 (638)
.+..+|..+...|.+.|++++|+..|++..+.+ +-+...|..+...|...|++++|+..+....... +.+...+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 78 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD---TTSAEAYYI 78 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---chhHHHHHH
Confidence 356788899999999999999999999998876 6678899999999999999999999999998876 356667777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
+...+...++++.|...+.++.... +.+...+..+..+|.+.|++++|++.|++.++.. +.+...|..+..++.+.|+
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCC
Confidence 8888899999999999999998863 3367888999999999999999999999998752 3357789999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 006630 576 RQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~ 595 (638)
+++|++.++++++++|+++.
T Consensus 157 ~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 157 RDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHhCCccCHH
Confidence 99999999999999998754
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=4.2e-12 Score=125.00 Aligned_cols=226 Identities=7% Similarity=-0.025 Sum_probs=169.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHE-------KKEEL-------EECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
++|+..|++...... -+...|..++..+. ..|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 456666666665422 24455555554443 34664 7888888888873124466688888888889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHH-HcCCHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTD-SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLL-RAQKVEM 508 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~-~~g~~~~ 508 (638)
.|++++|..+|+++.+.. +.+.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHcCCHHH
Confidence 999999999999988753 22344 78888888889999999999999998875 344455544433322 3699999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 006630 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMP--QPDTFAKLMRGLKKLYNRQIAAEITEK 585 (638)
Q Consensus 509 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~ 585 (638)
|..+|+++++.. +-+...|..++..+.+.|++++|..+|++.++.. +.| ....|..++......|+.+.|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998763 2367889999999999999999999999998853 455 356788888888889999999999999
Q ss_pred HHHHHHhcccc
Q 006630 586 VRKMAAERQIT 596 (638)
Q Consensus 586 ~~~~~p~~~~~ 596 (638)
+++..|+++..
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=143.19 Aligned_cols=214 Identities=12% Similarity=0.015 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL-KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
++++.+.++...... +.+...+..+...|...|++ ++|+..|++..+.+ +.+...|..+...|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455556666555432 45677778888888888888 88888888888765 5567888888888888899999999888
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc--------CC
Q 006630 478 EMVGRGLLSAPQYGTLKALLNSLLRA---------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN--------GH 540 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~ 540 (638)
+.++.. |+...+..+...+... |++++|...|+++++... .+...|..+..+|... |+
T Consensus 162 ~al~~~----p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 162 GALTHC----KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHTTC----CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhhC----CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence 888775 5567788888888888 899999999999888732 3677888888888888 88
Q ss_pred HHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHH
Q 006630 541 VKEACSYCLDMMDADVMP----QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKA 612 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p----~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~ 612 (638)
+++|+..|+++++. .| +...|..+..++...|++++|.+.++++++++|+++.++ .++...|++++|.+.
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 237 SQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998875 45 678899999999999999999999999999999988764 688899999999998
Q ss_pred Hhhhhhhhh
Q 006630 613 KKQVDGRKR 621 (638)
Q Consensus 613 ~~~~~~~~~ 621 (638)
+.+++.+..
T Consensus 315 ~~~~~~~~l 323 (474)
T 4abn_A 315 KGKTKPKKL 323 (474)
T ss_dssp TTTCCHHHH
T ss_pred hccccCccH
Confidence 888755543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-13 Score=139.03 Aligned_cols=299 Identities=11% Similarity=0.011 Sum_probs=181.4
Q ss_pred CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-C
Q 006630 277 DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN----ANSYTVLIQALCRMEKMEEANRAFVEMERS----GCEA-D 347 (638)
Q Consensus 277 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~-~ 347 (638)
....+......+...|++++|...++++.+.+.. + ..++..+...|...|++++|...|++.... +-.| .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3444555555556666666666666665554211 2 234555555555666666666665554321 1001 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGIL-PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIR 426 (638)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 426 (638)
..++..+...|...|++++|+..+++..+.... ++. .....++..+..
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 135 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 135 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHH
Confidence 233444445555555555555555544332000 000 001234555556
Q ss_pred HHHHcCC--------------------HHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006630 427 LACKLGE--------------------LKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQGCLIEACEYFKEMVG 481 (638)
Q Consensus 427 ~~~~~g~--------------------~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 481 (638)
.|...|+ +++|...+++..+. +..| ....+..+...|...|++++|+..+++...
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66776666654321 1111 134677788888888999999988888775
Q ss_pred CCCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 482 RGLLSAPQ----YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 482 ~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
.... .++ ..++..+...+...|++++|...++++..... .++ ..++..+...|...|++++|...+++.+
T Consensus 216 ~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 216 IAKE-FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHh-cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3210 122 23677788888999999999999998875410 111 4577888899999999999999999886
Q ss_pred hCC-CCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------c----chhhhhhhhhh
Q 006630 553 DAD-VMPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------F----KMYKRRGERDL 608 (638)
Q Consensus 553 ~~~-~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~----~~y~~~g~~~~ 608 (638)
+.. -.++ ..++..+...+...|++++|...+++++++.++.... + .+|...|+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 521 0122 4567888889999999999999999999997664321 1 56777776633
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.4e-13 Score=138.73 Aligned_cols=277 Identities=11% Similarity=0.019 Sum_probs=149.8
Q ss_pred HHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 006630 282 NNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA----NSYTVLIQALCRMEKMEEANRAFVEMERS----GC-EADVVTYT 352 (638)
Q Consensus 282 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~~~~~~~~ 352 (638)
..+...+...|++++|...++++.+.+.. +. .++..+...|...|++++|...|++..+. +. ......+.
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 33444555555555555555555554211 21 24445555555555555555555554431 00 11123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHc
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG-CVPDVSNYNVVIRLACKL 431 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~ 431 (638)
.+...|...|++++|+..+++..+.. .+.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHHc
Confidence 44444444555555555444433210 0000 011233455555566666
Q ss_pred CC-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc
Q 006630 432 GE-----------------LKEAVNVWNEMEAA----SL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ 489 (638)
Q Consensus 432 g~-----------------~~~A~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~ 489 (638)
|+ +++|+..+++..+. +. ......+..+...|...|++++|+.+|++..+.... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~ 258 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE-FGD 258 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTC
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh-cCC
Confidence 66 66666666554321 10 111236666777777778888887777776653210 011
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC
Q 006630 490 ----YGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--CE---LNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV-MPQ 559 (638)
Q Consensus 490 ----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~ 559 (638)
..++..+...+...|++++|...++++.... .. .....+..+..+|...|++++|..++++.++... .++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 2256666777777788888888877776541 00 1145566777777888888888888777654210 111
Q ss_pred ----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 560 ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 560 ----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
..++..+...+...|++++|.+.+++++++.+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 33566777777778888888888887777644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.8e-13 Score=137.65 Aligned_cols=204 Identities=13% Similarity=-0.010 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHH
Q 006630 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAA----S-LSPGTDSFVVMVHGFLGQGC-----------------LIEACEY 475 (638)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~-----------------~~~A~~~ 475 (638)
...+..+...|...|++++|...|++..+. + .+.....+..+...|...|+ +++|+++
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 345566666777777777777777766543 1 01223578888899999999 9999999
Q ss_pred HHHHHhCCC--C-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHH
Q 006630 476 FKEMVGRGL--L-SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSY 547 (638)
Q Consensus 476 ~~~m~~~~~--~-~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~ 547 (638)
+++..+... . .+....++..+...+...|++++|...++++.+... .++ ...+..+..+|...|++++|...
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 988765310 0 011234777788889999999999999999876511 112 23788899999999999999999
Q ss_pred HHHHHhCCC-CCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHH
Q 006630 548 CLDMMDADV-MPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKA 612 (638)
Q Consensus 548 ~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~ 612 (638)
++++++... ..+ ..++..+...+...|++++|...++++++..++... .+ .+|...|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 998875210 111 456888899999999999999999999999877543 22 688999999999999
Q ss_pred Hhhhhhhhh
Q 006630 613 KKQVDGRKR 621 (638)
Q Consensus 613 ~~~~~~~~~ 621 (638)
+++..+..+
T Consensus 366 ~~~al~~~~ 374 (411)
T 4a1s_A 366 AEQHLQLAX 374 (411)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 998544443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-11 Score=119.47 Aligned_cols=218 Identities=6% Similarity=0.020 Sum_probs=130.5
Q ss_pred hHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHhchh-CCCCCCHHHHHHHHHHH
Q 006630 155 GAVWALMEEMRKEKPQLITTEVFVILMRRFAS-------ARMV-------KKAIEVLDEMPK-YGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 155 ~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~A~~~~~~m~~-~g~~~~~~~~~~li~~~ 219 (638)
++|..+|++.....|. ++..|..++..+.. .|++ ++|..+|++..+ .. +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~p~--~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~-p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH--HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 5777788888777664 66677777666653 3554 677777777665 22 33455666777777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-HcCCHhHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLR-HFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA-QMGKMTDA 297 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~g~~~~a 297 (638)
.+.|++++|..+|++..+..|.+.. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776654443443 66666666667777777777777766543 223333333222211 24666666
Q ss_pred HHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 298 FELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG-CEA--DVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 298 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
.++|+...+.. +.+...|..++..+.+.|++++|..+|++..... ++| ....|..++..+.+.|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665542 2245556666666666666666666666666542 232 3455666666666666666666666666
Q ss_pred HHC
Q 006630 375 IQR 377 (638)
Q Consensus 375 ~~~ 377 (638)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-13 Score=135.64 Aligned_cols=239 Identities=14% Similarity=0.037 Sum_probs=134.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHhchhC----CCCC-C
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT--TEVFVILMRRFASARMVKKAIEVLDEMPKY----GCEP-D 208 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~~-~ 208 (638)
.....+..+...+.+.|++++|...|++.....|..+. ..++..+...+...|++++|+..+++.... +-.| .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 45566677778888889999999999888887654221 346677778888888888888888775432 2111 2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCC--CC----HHHHHHHHHHHHhcCC--------------------HHHH
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFK--PS----LRHFTSLLYGWCKEGK--------------------LVEA 262 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~li~~~~~~g~--------------------~~~A 262 (638)
..++..+...|...|++++|...|++.....+ ++ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 35667777778888888888888777643211 11 3366667777777777 6666
Q ss_pred HHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC-CCC----HHhHHHHHHHHHhcCCHHHH
Q 006630 263 KYVLVQMKDA----GFEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC-DPN----ANSYTVLIQALCRMEKMEEA 332 (638)
Q Consensus 263 ~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~-~~~----~~~~~~li~~~~~~g~~~~A 332 (638)
.+.+.+..+. +..| ...++..+...|...|++++|.+.+++..+... .++ ..++..+...|...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 6666654431 1000 122444555555555555555555555443200 001 12444445555555555555
Q ss_pred HHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 333 NRAFVEMERSGC-EAD----VVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 333 ~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
...+++..+... ..+ ..++..+...|...|++++|...+++.
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 555554432100 001 223444444444444444444444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-13 Score=131.62 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=133.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHH
Q 006630 315 SYTVLIQALCRMEKMEEANRAFVEMERSGCEAD----VVTYTTLISGFCKSRKIDRCYEILDSMIQR----GILP-NQLT 385 (638)
Q Consensus 315 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t 385 (638)
.+......+...|++++|...|+++.+.. +.+ ...+..+...|...|++++|++.+++..+. +..| ...+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445556667777777777777776653 112 245666666677777777777777665432 1111 1233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGC-VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
+..+...+...|++++|...+.+..+... .++.. ....++..+...+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHH
Confidence 44444455555555555555555433200 01100 00123344444444
Q ss_pred hcCC--------------------HHHHHHHHHHHHhC----CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 006630 465 GQGC--------------------LIEACEYFKEMVGR----GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG 520 (638)
Q Consensus 465 ~~g~--------------------~~~A~~~~~~m~~~----~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 520 (638)
..|+ +++|+..+++.... +. .+....++..+...+...|++++|...++++.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGD-RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444 44444444443321 00 00112244445555555566666666655554330
Q ss_pred C-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 521 C-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 521 ~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
. .++ ...+..+...+...|++++|..++++.++.. -.++ ..++..+...+...|++++|...++++++..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 0 001 2245555556666666666666665554310 0111 3345555556666666666666666666665
Q ss_pred Hhccc------cc----chhhhhhhhhhHHHHHhhhhh
Q 006630 591 AERQI------TF----KMYKRRGERDLKEKAKKQVDG 618 (638)
Q Consensus 591 p~~~~------~~----~~y~~~g~~~~A~~~~~~~~~ 618 (638)
|+... .+ .+|...|++++|.+.+++..+
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 54322 11 456666666666666666443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.4e-13 Score=130.86 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCH
Q 006630 278 IVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN----ANSYTVLIQALCRMEKMEEANRAFVEMERS----GCE-ADV 348 (638)
Q Consensus 278 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~ 348 (638)
...+......+...|++++|...++++.+.... + ...+..+...|...|++++|...+++..+. +.. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 345566677889999999999999999987432 3 367888999999999999999999987643 111 124
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006630 349 VTYTTLISGFCKSRKIDRCYEILDSMIQRGI-LPN----QLTYLHIMLAHEKKEE--------------------LEECV 403 (638)
Q Consensus 349 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~~~~~g~--------------------~~~a~ 403 (638)
.++..+...|...|++++|+..+++..+... .++ ..++..+...+...|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 5788888999999999999999998765311 112 2244444555555555 44444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 404 ELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
+.++...+ ++.... ..+.....+..+...+...|++++|...+++..+..
T Consensus 164 ~~~~~a~~----------------------------~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 213 (338)
T 3ro2_A 164 DLYEENLS----------------------------LVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 213 (338)
T ss_dssp HHHHHHHH----------------------------HHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----------------------------HHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 44433221 111100 001112356667777777788888887777766431
Q ss_pred CCC-CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 484 LLS-AP--QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 484 ~~~-~p--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
... .+ ...++..+...+...|++++|...+++...... .++ ...+..+...+...|++++|...++++++..
T Consensus 214 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 214 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 100 01 123667777788888999999999888765410 111 4567788889999999999999998876521
Q ss_pred C-CCC----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 556 V-MPQ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 556 ~-~p~----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
. .++ ..++..+...+...|++++|...+++++++.++
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 294 QELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 0 111 346778888999999999999999999987765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.1e-12 Score=128.07 Aligned_cols=234 Identities=9% Similarity=0.005 Sum_probs=163.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC----CCCHHHHH
Q 006630 354 LISGFCKSRKIDRCYEILDSMIQRG-ILPN----QLTYLHIMLAHEKKEELEECVELMGEMRKI--GC----VPDVSNYN 422 (638)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~ 422 (638)
....+...|++++|+..|++..+.- -.++ ..++..+...+...|++++|...+.+..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4455666777777777777776531 0122 345666677777778887777777776542 11 11235677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCcHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAASL-SPG----TDSFVVMVHGFLGQGCLIEACEYFKEMVG-----RGLLSAPQYGT 492 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~p~~~~ 492 (638)
.+...|...|++++|...|++..+..- .++ ..++..+...|...|++++|+..|++..+ ... +....+
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~ 266 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL--PSLPQA 266 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG--GGHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc--hhHHHH
Confidence 777888888999999988887764310 111 24778888999999999999999998887 321 123567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTK----GCELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDADVMPQ-PDTFA 564 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~t~~ 564 (638)
+..+...+.+.|++++|...+++..+. +.......+..+...+...|+ +++|+.++++. +..|+ ...+.
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 343 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHH
Confidence 788888899999999999999988764 111122335677888888898 77788777664 22333 34577
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+...|...|++++|...+++++++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7888899999999999999999987754
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=110.85 Aligned_cols=167 Identities=14% Similarity=0.100 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
++.+|..+...|.+.|++++|+..|++..+.+|. +..++..+...+...|++++|+..+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN--NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 5567788888888888888888888888877765 66777777788888888888888887776653 44566677777
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
..+...++++.|...+.+.....|.+...+..+...|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 777777888888888877776666777777777777777888888887777777654 4456677777777777777777
Q ss_pred HHHHHHHHHHc
Q 006630 297 AFELLKEMRRK 307 (638)
Q Consensus 297 a~~~~~~~~~~ 307 (638)
|.+.|++.++.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 77777777664
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=110.54 Aligned_cols=174 Identities=11% Similarity=0.072 Sum_probs=148.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLN 498 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~ 498 (638)
..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|..+++++.... +.+...+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~ 84 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence 456667778888999999999999888764 5677888899999999999999999999998875 456778888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
.+...|++++|.+.++++.+.. +.+...+..+..++...|++++|..+++++++.. ..+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999998763 3467888899999999999999999999988753 3457788899999999999999
Q ss_pred HHHHHHHHHHHHHhcccccc
Q 006630 579 AAEITEKVRKMAAERQITFK 598 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~~~~~ 598 (638)
|...++++++..|+++....
T Consensus 163 A~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 163 ALPHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHHHcCCCchhhHh
Confidence 99999999999999876543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.2e-13 Score=130.37 Aligned_cols=249 Identities=12% Similarity=0.031 Sum_probs=132.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 313 ANSYTVLIQALCRMEKMEEANRAFVEMERS-------GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLT 385 (638)
Q Consensus 313 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 385 (638)
..++..+...|...|++++|..+|+++.+. ........+..+...|...|++++|+..+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 445566666666666777676666666542 112223445556666666666666666666554320
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC-CCCHHHHHH
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA------SL-SPGTDSFVV 458 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~ 458 (638)
........+.....+..+...|...|++++|...|+++.+. +. +.....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001112334444555555555555555555554432 11 112345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhC------CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGR------GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-------GCELN- 524 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~------~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~p~- 524 (638)
+...+...|++++|+++|+++... +. .+....++..+...+...|++++|.+.++++.+. ...+.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPD-DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 666777777777777777766653 10 0122345666677777777777777777777653 01111
Q ss_pred ------HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 525 ------VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 525 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
...+..+...+...+.+.+|...+...... .| +..++..+..+|...|++++|.+++++++++.|+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 112223334445556666777777666543 33 3556888999999999999999999999999875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-11 Score=123.72 Aligned_cols=162 Identities=9% Similarity=0.010 Sum_probs=84.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC--CC----CCHHhHH
Q 006630 249 LLYGWCKEGKLVEAKYVLVQMKDA----GFEP-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG--CD----PNANSYT 317 (638)
Q Consensus 249 li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g--~~----~~~~~~~ 317 (638)
....+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|.+.+++..+.- .. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445556667777777777776643 1011 22456666666666677777666666655421 00 0123555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 006630 318 VLIQALCRMEKMEEANRAFVEMERSGC-EAD----VVTYTTLISGFCKSRKIDRCYEILDSMIQR----GI-LPNQLTYL 387 (638)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~t~~ 387 (638)
.+...|...|++++|...|++..+... .++ ..++..+...|...|++++|+..|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 566666666666666666666543200 011 124555555666666666666666555441 11 11233444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006630 388 HIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 388 ~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
.+...+...|++++|...+++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44555555555555555554443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-11 Score=112.92 Aligned_cols=206 Identities=10% Similarity=-0.029 Sum_probs=155.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006630 381 PNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMV 460 (638)
Q Consensus 381 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li 460 (638)
.|+..+......+...|++++|...|+...+...+++...+..+..+|.+.|++++|+..|++..+.+ +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 35677888888888999999999999998887633777777778888999999999999999988875 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQY-------GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN---VYAWTI 530 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~ 530 (638)
..|...|++++|+..|++.++.. +.+. ..+..+...+...|++++|++.|+++++. .|+ ...|..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~ 158 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV---PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYS 158 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHH
Confidence 99999999999999999988875 2334 45777777888889999999999998875 454 456777
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchh
Q 006630 531 WIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 531 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
+..+|...|+ .+++++...+ ..+...+.... ....+.+++|...++++++++|+++.+..++
T Consensus 159 l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l 220 (228)
T 4i17_A 159 LGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 7777765543 3445554432 23344444433 3345778999999999999999988765444
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=128.56 Aligned_cols=209 Identities=13% Similarity=0.043 Sum_probs=110.7
Q ss_pred HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 190 VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSV-KEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 190 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
++++++.++...... +.+...+..+...|...|++ ++|+..|++..+..|.+...|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444433321 23455555555555556666 6666666655554455556666666666666666666666666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHc---------CCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--------CCHHH
Q 006630 269 MKDAGFEPDIVVYNNLLSGYAQM---------GKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM--------EKMEE 331 (638)
Q Consensus 269 m~~~g~~p~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--------g~~~~ 331 (638)
..+. .|+...+..+...+... |++++|.+.+++..+... .+...|..+...|... |++++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 6554 34455555555555555 555556555555555422 2445555555555555 55555
Q ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 332 ANRAFVEMERSGCE---ADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 332 A~~~~~~m~~~g~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
|...|++..+.. + .+...|..+...|...|++++|++.|++..+.... +...+..+...+...|++++|.+
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555542 1 24555555555555555555555555555543222 33344444444444444444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.8e-10 Score=113.48 Aligned_cols=261 Identities=10% Similarity=-0.019 Sum_probs=144.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHH
Q 006630 352 TTLISGFCKSRKIDRCYEILDSMIQRGI-LPNQ----LTYLHIMLAHEKKEELEECVELMGEMRKI----GCV--P-DVS 419 (638)
Q Consensus 352 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~ 419 (638)
+.+...+...|++++|...+++...... ..+. .++..+...+...|++++|...++...+. +.. | ...
T Consensus 57 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 136 (373)
T 1hz4_A 57 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHH
Confidence 3334444445555555555544433100 0011 12333444555556666666555554331 111 1 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH-
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLS---P-GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK- 494 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~- 494 (638)
.+..+...|...|++++|...+++..+..-. + ....+..+...+...|++++|...+++................
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 216 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 216 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH
Confidence 4445566667777777777777766543211 1 1245666777777778888888887777643110011111111
Q ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCCH-HHH
Q 006630 495 ---ALLNSLLRAQKVEMAKDVWSCIVTKGCEL---NVYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQP-DTF 563 (638)
Q Consensus 495 ---~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~t~ 563 (638)
..+..+...|++++|...+++.......+ ....+..+...+...|++++|...+++.... +..++. ..+
T Consensus 217 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 296 (373)
T 1hz4_A 217 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 22334667888888888887776542111 1234566777888888888888888877542 211222 256
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhh
Q 006630 564 AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 564 ~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~ 615 (638)
..+..++...|+.++|...+++++++.+... ....+...| +....++++
T Consensus 297 ~~la~~~~~~g~~~~A~~~l~~al~~~~~~g-~~~~~~~~g--~~~~~ll~~ 345 (373)
T 1hz4_A 297 LLLNQLYWQAGRKSDAQRVLLDALKLANRTG-FISHFVIEG--EAMAQQLRQ 345 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-CCHHHHTTH--HHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhcccc-HHHHHHHcc--HHHHHHHHH
Confidence 6667778888999999999999998877633 223444444 334444444
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=116.64 Aligned_cols=233 Identities=9% Similarity=-0.057 Sum_probs=159.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC-CCHHHHH
Q 006630 354 LISGFCKSRKIDRCYEILDSMIQRG-ILPN----QLTYLHIMLAHEKKEELEECVELMGEMRKI----G-CV-PDVSNYN 422 (638)
Q Consensus 354 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~-~~-~~~~~~~ 422 (638)
....+...|++++|+..|++..+.. -.++ ..++..+...+...|+++.|...+.+..+. + .. ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 3444567788888888887776531 1122 345666777777788888888777776542 1 01 1244667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCCcHHH
Q 006630 423 VVIRLACKLGELKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQGCLIEACEYFKEMVG-----RGLLSAPQYGT 492 (638)
Q Consensus 423 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~~~p~~~~ 492 (638)
.+...|...|++++|...|++..+. +..+ ...++..+...|...|++++|+..|++... .. +....+
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~ 263 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP---DLLPKV 263 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG---GGHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC---hhHHHH
Confidence 7777888888888888888876542 1111 124677788888889999999999988877 43 233567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCC-HHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKG----CELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDADVMPQ-PDTFA 564 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~t~~ 564 (638)
+..+...+.+.|++++|...+++..+.. .+.....+..+...+...|+ +++|+.++++. +..|+ ...+.
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~ 340 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHH
Confidence 7788888889999999999999887751 11123445666667777788 77777777652 22333 33566
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+...|...|++++|...++++++...+
T Consensus 341 ~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 341 SAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 7888888889999999999988877643
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.3e-12 Score=125.54 Aligned_cols=132 Identities=17% Similarity=0.074 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhc--------cCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRE--------RFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA------GF 274 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 274 (638)
..++..+...|...|++++|..+|+++.+ ..+....++..+...|...|++++|...+++..+. +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 45566666666677777777777766544 12233455566666666666666666666665542 11
Q ss_pred -CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 275 -EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRK------GCDP-NANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 275 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+....++..+...|...|++++|.+.++++.+. +..| ...++..+...|...|++++|..+|+++.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 112334445555555555555555555554432 1111 22334444444555555555555554444
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-11 Score=134.25 Aligned_cols=175 Identities=17% Similarity=0.160 Sum_probs=154.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHH
Q 006630 415 VPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLK 494 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~ 494 (638)
+-+...++.|...|.+.|++++|++.|++..+.. +-+...|+.+...|.+.|++++|+..|++.++.. +.+..++.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~ 81 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYS 81 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHH
Confidence 4456789999999999999999999999999876 5668899999999999999999999999999876 45678899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhh
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKL 573 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~ 573 (638)
.+..++...|++++|++.|+++++.... +...|+.+..+|...|++++|++.|++.++. .|+ ...|..+..++...
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhc
Confidence 9999999999999999999999987422 6788999999999999999999999999875 554 67799999999999
Q ss_pred cCHHHHHHHHHHHHHHHHhcccc
Q 006630 574 YNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|++++|.+.+++++++.|+....
T Consensus 159 g~~~~A~~~~~kal~l~~~~~~~ 181 (723)
T 4gyw_A 159 CDWTDYDERMKKLVSIVADQLEK 181 (723)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHhChhHHhh
Confidence 99999999999999999986543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.9e-11 Score=130.59 Aligned_cols=165 Identities=11% Similarity=0.031 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 383 QLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462 (638)
Q Consensus 383 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (638)
..+++.+...+.+.|++++|++.|++..+.. +-+...+..+..+|.+.|++++|+..|++..+.+ +-+...|..+...
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4577788888888888888888888887764 4567778888888888888888888888887765 4556788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVK 542 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 542 (638)
|...|++++|++.|++.++.. +.+..++..+..++...|++++|++.|+++++.... +...|..+..+|...|+++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 888888888888888888765 355677888888888888888888888888776322 4667788888888888888
Q ss_pred HHHHHHHHHHh
Q 006630 543 EACSYCLDMMD 553 (638)
Q Consensus 543 ~A~~~~~~m~~ 553 (638)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=4.7e-10 Score=100.50 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
+..+...+...|++++|+..++.+.+.. +.+..++..+...+...|++++|...|+++.+..+.+...|..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQV 89 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence 3334444444555555555555444332 233444444555555555555555555554444344444444555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAF 336 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 336 (638)
|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|...+
T Consensus 90 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 90 QKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555444432 2233444444444444444444444444444332 113334444444444444444444444
Q ss_pred HHHH
Q 006630 337 VEME 340 (638)
Q Consensus 337 ~~m~ 340 (638)
++..
T Consensus 168 ~~~~ 171 (186)
T 3as5_A 168 KKAN 171 (186)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-10 Score=108.93 Aligned_cols=266 Identities=8% Similarity=-0.029 Sum_probs=180.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEE 401 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 401 (638)
-..-.|.+..++.-...+.. ......-.-+.++|...|+++.. ....|....+..+...+ ..+
T Consensus 22 n~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred HHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence 34455777777663332221 11222333345667777776532 12334443444433333 222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 402 CVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASL-SPGTDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 402 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
+...+++..+.+ .++...+..+..++...|++++|++++.+....+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766654 45566666788889999999999999999876652 1356788888999999999999999999998
Q ss_pred hCCCCCCC-----cHHHHHHHHHHH--HHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 481 GRGLLSAP-----QYGTLKALLNSL--LRAQ--KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 481 ~~~~~~~p-----~~~~~~~ll~~~--~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
+.. | +..+...+..++ ...| ++.+|..+|+++.+. .|+..+-..+..++.+.|++++|.+.++.+
T Consensus 164 ~~~----~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 164 NAI----EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHS----CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcC----ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 764 6 356666677663 3334 899999999998765 455333344444889999999999999876
Q ss_pred HhC-----CC---CC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHH
Q 006630 552 MDA-----DV---MP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAK 613 (638)
Q Consensus 552 ~~~-----~~---~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~ 613 (638)
.+. .. .| |+.++..++......|+ .|.++++++.+..|++|.+.+.-.+...++++..-|
T Consensus 238 ~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~Fd~~~~ky 306 (310)
T 3mv2_B 238 LSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKFDELVRKY 306 (310)
T ss_dssp HSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHh
Confidence 542 11 24 45667677766667787 889999999999999999988777777777766543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-09 Score=109.78 Aligned_cols=269 Identities=11% Similarity=0.018 Sum_probs=192.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHH
Q 006630 353 TLISGFCKSRKIDRCYEILDSMIQRGILPNQL----TYLHIMLAHEKKEELEECVELMGEMRKIGC-VPD----VSNYNV 423 (638)
Q Consensus 353 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ 423 (638)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+++..+... ..+ ..++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445667899999999999887754333332 455666778889999999999998765310 112 233566
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cHHHHH
Q 006630 424 VIRLACKLGELKEAVNVWNEMEAA----SLS--PG-TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP--QYGTLK 494 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--~~~~~~ 494 (638)
+...+...|++++|...+++..+. +.. |. ...+..+...+...|++++|..++++.........+ ...++.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777899999999999999987642 212 22 346677888999999999999999998875321111 234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH-----HHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCEL-NVYAWT-----IWIHSLFSNGHVKEACSYCLDMMDADVMPQ---PDTFAK 565 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ 565 (638)
.+...+...|++++|...+++.......+ ....|. ..+..+...|++++|..++++.......+. ...+..
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 258 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 258 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHH
Confidence 78888999999999999999987651121 112222 233457799999999999998765322111 234677
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhccc------cc----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAERQI------TF----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
+...+...|++++|...++++++..+.... .+ .+|...|++++|.+.+++......
T Consensus 259 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 259 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 788899999999999999999998766331 11 578899999999999998655443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-10 Score=112.28 Aligned_cols=231 Identities=7% Similarity=-0.057 Sum_probs=149.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 006630 319 LIQALCRMEKMEEANRAFVEMERSGC-EAD----VVTYTTLISGFCKSRKIDRCYEILDSMIQRG--I---LP-NQLTYL 387 (638)
Q Consensus 319 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~---~p-~~~t~~ 387 (638)
....+...|++++|...|++..+... .++ ..++..+...|...|++++|+..+++..+.. . .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445666777777777777654210 112 3456666667777777777777777665421 1 11 134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 006630 388 HIMLAHEKKEELEECVELMGEMRKI----GCV-PDVSNYNVVIRLACKLGELKEAVNVWNEMEA-----ASLSPGTDSFV 457 (638)
Q Consensus 388 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 457 (638)
.+...+...|++++|.+.+.+..+. +.+ ....++..+...|...|++++|...|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6677777777777777777766542 111 1234567777888888888888888888776 43 33356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCc-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQ-YGTLKALLNSLLRAQK---VEMAKDVWSCIVTKGCELN-VYAWTIW 531 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~p~-~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 531 (638)
.+...|...|++++|..++++....... ..|. ...+..+...+...++ +++|..++++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8888899999999999999888774211 0222 3344444455556677 77777777653 22222 3456678
Q ss_pred HHHHHccCCHHHHHHHHHHHHh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~ 553 (638)
...|...|++++|...|++.++
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999888764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.25 E-value=6e-10 Score=106.55 Aligned_cols=67 Identities=15% Similarity=0.101 Sum_probs=56.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhh----------cCHHHHHHHHHHHHHHHHhcc
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTFAKLMRGLKKL----------YNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p~~~ 594 (638)
..+...|...|++++|+..|+++++. .|+ ...+..+..++... |++++|...++++++..|+++
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDA--YPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 56688899999999999999999874 343 45677888888866 899999999999999999987
Q ss_pred ccc
Q 006630 595 ITF 597 (638)
Q Consensus 595 ~~~ 597 (638)
...
T Consensus 230 ~~~ 232 (261)
T 3qky_A 230 LLR 232 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.3e-09 Score=100.02 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 348 VVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL 427 (638)
Q Consensus 348 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 427 (638)
+..|..+...+...|++++|+..|++..+....++...+..+..++...|++++|.+.++...+.. +.+...+..+...
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 344444444455555555555555555444332344444445555555555555555555555432 2234445555555
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCC--cHHHHHHHHH
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGT-------DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAP--QYGTLKALLN 498 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p--~~~~~~~ll~ 498 (638)
|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|++.|+++++.. +. +...+..+..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CCcccHHHHHHHHH
Confidence 555555555555555555443 2233 345555566666666666666666666553 12 2344445554
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.+... +..+++++...+ ..+...|.... ....+.+++|+..+++.++.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 44433 233344444432 11233333222 22345567777777777654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.20 E-value=1.9e-07 Score=97.49 Aligned_cols=403 Identities=7% Similarity=-0.041 Sum_probs=215.1
Q ss_pred hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHHH
Q 006630 154 FGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS-VKEAAKLF 232 (638)
Q Consensus 154 ~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~ 232 (638)
++.|..+|+.+....|. ++++.+.++|++.+.. .|++..|...+....+.++ .+....+|
T Consensus 11 i~~aR~vyer~l~~~P~-----------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 11 LSSPSAIMEHARRLYMS-----------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp -CCHHHHHHHHHHHHHT-----------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred hHHHHHHHHHHHHHCCC-----------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 55666666666554322 6677777777777654 4677777776666665553 34455666
Q ss_pred HHHhcc---CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 233 DEMRER---FKPSLRHFTSLLYGWC----KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 233 ~~~~~~---~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
+..... .+.+...|...+..+. .+|+.+.+..+|++.+......-...|...... ....+...+.+++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 665442 3446667777666543 245666777777777753111001112111111 11111111222211110
Q ss_pred HcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--C-----HHHHHHHHHHHHHCC
Q 006630 306 RKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR--K-----IDRCYEILDSMIQRG 378 (638)
Q Consensus 306 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g--~-----~~~A~~~~~~m~~~~ 378 (638)
..+..|..+++.+...--..+...|...+.--...+ - .+.+..+|+++....
T Consensus 151 ---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~ 209 (493)
T 2uy1_A 151 ---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF 209 (493)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC
Confidence 112223333332221100012334444333221110 0 233455666665542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---------CC
Q 006630 379 ILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA---------SL 449 (638)
Q Consensus 379 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~ 449 (638)
. .+...|...+.-+...|+.+.|..++++.... +.+...+. .|....+.++. ++.+.+. +.
T Consensus 210 p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~ 279 (493)
T 2uy1_A 210 Y-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEK 279 (493)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC---------
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhh
Confidence 2 24555555555556666666666666666655 33322222 12222111111 1211110 00
Q ss_pred CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCH
Q 006630 450 SP---GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR-AQKVEMAKDVWSCIVTKGCELNV 525 (638)
Q Consensus 450 ~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 525 (638)
.+ ....|...+..+.+.+..+.|..+|+++ ... ..+...|......-.+ .++.+.|+.+|+..++.. +-+.
T Consensus 280 ~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~---~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~ 354 (493)
T 2uy1_A 280 VFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE---GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDST 354 (493)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS---CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCH
T ss_pred hcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC---CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCH
Confidence 01 1245777777777788899999999999 322 2345555433322223 346999999999998862 2245
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH----hccccc----
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA----ERQITF---- 597 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~---- 597 (638)
..|...++.....|+.+.|..+|+++. .....|...+..-...|+.+.++.++++..+.-. +++..+
T Consensus 355 ~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~ 429 (493)
T 2uy1_A 355 LLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHN 429 (493)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--C
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccH
Confidence 567778888888999999999999862 2466788888877888999999999999987544 344332
Q ss_pred -chhhhhhhhhhHHHHHhhhh
Q 006630 598 -KMYKRRGERDLKEKAKKQVD 617 (638)
Q Consensus 598 -~~y~~~g~~~~A~~~~~~~~ 617 (638)
+.=...|.++....-|+-+.
T Consensus 430 ~~fe~~~g~l~~~~~~~~~~~ 450 (493)
T 2uy1_A 430 VQMEGILGRYHCFLDSFNFLD 450 (493)
T ss_dssp CCCCHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHhhhHHHHHHHhhhhc
Confidence 22233477777777666543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.15 E-value=3.5e-09 Score=101.17 Aligned_cols=243 Identities=9% Similarity=-0.007 Sum_probs=169.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
|.-..-.|.+..++.-. .+-...........+.+++...|+++.. ..-.|....+..+... ...+
T Consensus 20 ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT--
T ss_pred HHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc--
Confidence 34455679999988733 2222222333444456777777776531 1223444444444443 3322
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWS 514 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~ 514 (638)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+.. .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 --a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 --NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp --CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred --HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 788888887765 566777778899999999999999999999887620 1356677788899999999999999999
Q ss_pred HHHHcCCCC-----CHHHHHHHHHH--HHccC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 006630 515 CIVTKGCEL-----NVYAWTIWIHS--LFSNG--HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEK 585 (638)
Q Consensus 515 ~~~~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~ 585 (638)
.|.+. .| +..+...+..+ ....| ++++|..+|+++.+. .|+..+-..++.++...|++++|++.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99875 55 24555555555 44444 999999999999765 57644444555588899999999999999
Q ss_pred HHHHH----------Hhccccc-c---hhhhhhhhhhHHHHHhhhhhhhhh
Q 006630 586 VRKMA----------AERQITF-K---MYKRRGERDLKEKAKKQVDGRKRR 622 (638)
Q Consensus 586 ~~~~~----------p~~~~~~-~---~y~~~g~~~~A~~~~~~~~~~~~~ 622 (638)
+.+.. |+++.++ + ++...|+ +|.++++++....+.
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 88884 6677775 3 5566676 888888887665543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-10 Score=109.71 Aligned_cols=175 Identities=7% Similarity=-0.061 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC-CC--cH
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQ-GCLIEACEYFKEMVGRGLLS-AP--QY 490 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~-~p--~~ 490 (638)
+|+.+..+|.+.|++++|+..|++..+. |-.. -..+|+.+...|... |++++|+..|++.++..... .+ ..
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 3444444444455555555444444321 1000 023566666677775 77777777777766532100 01 02
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH---
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV------YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD--- 561 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--- 561 (638)
.++..+...+...|++++|...|+++.+....... ..|..+..++...|++++|+..|++.++. .|+..
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 35666677777777777777777777765322111 14566666777777777777777776642 34321
Q ss_pred ---HHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 562 ---TFAKLMRGLK--KLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 562 ---t~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.+..++.++. ..++++.|...++++.+++|.+..+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 2334445553 3456777777777777776665433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=108.96 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=145.9
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHH
Q 006630 359 CKSRKIDRCYEILDSMIQR-------GILPNQLTYLHIMLAHEKKEELEECVELMGEMRKI------G-CVPDVSNYNVV 424 (638)
Q Consensus 359 ~~~g~~~~A~~~~~~m~~~-------~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l 424 (638)
...|++++|+.+|++..+. ..+....++..+...+...|++++|...++++.+. + .+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4467777777777766552 11223556777888888899999999988887653 1 12335667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCCcHHH
Q 006630 425 IRLACKLGELKEAVNVWNEMEAA------S-LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGR-----GLLSAPQYGT 492 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~~p~~~~ 492 (638)
...|...|++++|...|++..+. . .+.....+..+...|...|++++|+.+|+++... +...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 88888889999999888887654 1 1223467778888888888899998888888765 1100223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHH---h-CC-CCC-
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTK-------GCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMM---D-AD-VMP- 558 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-~~-~~p- 558 (638)
+..+...+...|++++|..+++++.+. ...+ ....|..+...+...+....+..+ ..+. + .+ ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 777888888888888888888888754 1112 222344444444433333333222 1111 1 11 112
Q ss_pred CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 559 QPDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 559 ~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
...++..+...+...|++++|..+++++++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2345777788888888888888888887753
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.8e-10 Score=107.05 Aligned_cols=229 Identities=10% Similarity=0.002 Sum_probs=157.8
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHH
Q 006630 324 CRMEKMEEANRAFVEMERS-------GCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQR------GILP-NQLTYLHI 389 (638)
Q Consensus 324 ~~~g~~~~A~~~~~~m~~~-------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~l 389 (638)
...|++++|..+|++..+. ..+....++..+...|...|++++|+..+++..+. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777665542 21224567888999999999999999999998864 2222 35678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------C-CCCCHHH
Q 006630 390 MLAHEKKEELEECVELMGEMRKI------G-CVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA------S-LSPGTDS 455 (638)
Q Consensus 390 l~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~ 455 (638)
...+...|++++|.+.+.+..+. . .+.....+..+...|...|++++|...|+++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1334677888889999999999999999998764 1 1223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCCcHHHHHHHHHHHHHcCCHHHHH------HHHHHHHHcCCCC
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGRG------LLSAPQYGTLKALLNSLLRAQKVEMAK------DVWSCIVTKGCEL 523 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~p~~~~~~~ll~~~~~~g~~~~A~------~~~~~~~~~~~~p 523 (638)
+..+...|...|++++|+.+|+++.... .........+..+.......+....+. ..++.... ....
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 8899999999999999999999998641 000112223333333333333322222 22221111 1112
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
....+..+..+|...|++++|..++++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345688899999999999999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.12 E-value=3.5e-09 Score=89.04 Aligned_cols=133 Identities=16% Similarity=0.198 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 534 (638)
.|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|..+++++...+ +.+...|..+...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC---CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 45566666666677777777777666654 2445556666666667777777777777766653 2245566667777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+...|++++|..+++++.+.. ..+...+..+...+...|++++|...++++++.+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777777777776542 234556667777777777777777777777777664
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=9.2e-10 Score=107.17 Aligned_cols=208 Identities=11% Similarity=-0.024 Sum_probs=152.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAA----SLSPG-TDSFVVMVHGFLGQGCLIEA 472 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 472 (638)
++++|...+... ...|...|++++|...|++..+. +-+++ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888887776 34577899999999999987653 31222 46889999999999999999
Q ss_pred HHHHHHHHhCCCCC-CCc--HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHccCCHHH
Q 006630 473 CEYFKEMVGRGLLS-APQ--YGTLKALLNSLLRA-QKVEMAKDVWSCIVTKGCE-LN----VYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 473 ~~~~~~m~~~~~~~-~p~--~~~~~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~ 543 (638)
+..|++.+...... .+. ..++..+...|... |++++|+..|++.++.... .+ ..++..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999887642100 111 35788888899996 9999999999999875111 01 3568889999999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc---------chh--hhhhhh
Q 006630 544 ACSYCLDMMDADVMPQP------DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF---------KMY--KRRGER 606 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~------~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---------~~y--~~~g~~ 606 (638)
|+..|++.++....... ..|..+..++...|+++.|...++++++++|+.+... ..| ...+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999875322221 1567788889999999999999999999999876541 223 256789
Q ss_pred hhHHHHHhhhhhhh
Q 006630 607 DLKEKAKKQVDGRK 620 (638)
Q Consensus 607 ~~A~~~~~~~~~~~ 620 (638)
++|.+.|+++....
T Consensus 257 ~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 257 SEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHHHHTTSSCCC
T ss_pred HHHHHHhccCCccH
Confidence 99999998764433
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-09 Score=100.09 Aligned_cols=127 Identities=11% Similarity=-0.004 Sum_probs=93.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (638)
+...|...|++++|+..|++.++.. +.+...+..+...+...|++++|...|+++++... .+...|..+..+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA---PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 7888888899999999998888876 35677888888888889999999999998888632 2577788888887666
Q ss_pred CC--HHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 539 GH--VKEACSYCLDMMDADVMPQP--DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 539 g~--~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
|. .+.+...++... .|++ ..+.....++...|++++|+..++++++++|+.
T Consensus 136 ~~~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 344555555543 3443 344455666677789999999999999998864
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.07 E-value=7.2e-09 Score=87.06 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=93.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
+|..+...+...|++++|..+|+++....|. +...+..+...+...|++++|...++++.+.+ +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc--chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 4666777777788888888888877776543 56667777777777777777777777776654 34566677777777
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
...|++++|...|+++....+.+...+..+...+.+.|++++|...|+++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777776655666777777777777777777777777776654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=2.2e-10 Score=99.18 Aligned_cols=134 Identities=11% Similarity=-0.042 Sum_probs=104.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (638)
|...+...|++++|+..+....... +.+...+..+...|.+.|++++|++.|+++++... -+...|..+..+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc
Confidence 3445556778888888888876553 22344566778889999999999999999988742 2678899999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHH-HHHHHHHHHHhcccccc
Q 006630 539 GHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAE-ITEKVRKMAAERQITFK 598 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~-~~~~~~~~~p~~~~~~~ 598 (638)
|++++|+..|++.++. .| +...|..+...+.+.|++++|.+ +++++++++|+++.++.
T Consensus 79 ~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~ 138 (150)
T 4ga2_A 79 ENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYK 138 (150)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHH
T ss_pred CchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHH
Confidence 9999999999998875 45 46778889999999999876555 56999999999988763
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.2e-09 Score=119.63 Aligned_cols=173 Identities=10% Similarity=-0.050 Sum_probs=118.9
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006630 394 EKKEELEECVELMGEMR--------KIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG 465 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~ 465 (638)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|+..|+++.+.+ +.+...|..+...|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56777888888877776 332 4456667777777777888888888887777664 4566777777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 545 (638)
.|++++|+..|+++++.. +.+...+..+..++.+.|++++ ++.|+++++... .+...|..+..+|.+.|++++|+
T Consensus 480 ~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHH
Confidence 888888888888777765 2445566777777777788877 777777776532 25667777777788888888888
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhhcC
Q 006630 546 SYCLDMMDADVMPQ-PDTFAKLMRGLKKLYN 575 (638)
Q Consensus 546 ~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~ 575 (638)
..|+++++. .|+ ...+..+..++...++
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 877776643 565 3446666666555444
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-08 Score=96.88 Aligned_cols=190 Identities=9% Similarity=-0.044 Sum_probs=125.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCC-CC-CHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGC-EP-DEFV 211 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-~~-~~~~ 211 (638)
+.+...+-.+...+.+.|++++|+..|+++....|..+. ...+..+..++...|++++|+..|++..+... .| ...+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456677777888888999999999999999888765322 66788888889999999999999999887521 12 2456
Q ss_pred HHHHHHHHHh--------CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 212 FGCLLDALCK--------NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNN 283 (638)
Q Consensus 212 ~~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 283 (638)
+..+..++.. .|++++|+..|+++....|.+...+..+.......++. ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~------------------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKL------------------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH------------------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHH------------------HHHHHH
Confidence 7778888888 89999999999998877666655553331111100000 011344
Q ss_pred HHHHHHHcCCHhHHHHHHHHHHHcCCCC--CHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHc
Q 006630 284 LLSGYAQMGKMTDAFELLKEMRRKGCDP--NANSYTVLIQALCRM----------EKMEEANRAFVEMERS 342 (638)
Q Consensus 284 ll~~~~~~g~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 342 (638)
+...|.+.|++++|...|+.+++..... ....+..+..+|.+. |++++|...|+++.+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 5566666666666666666666542211 123455555556544 6667777777766655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-08 Score=93.00 Aligned_cols=192 Identities=10% Similarity=-0.019 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..+-.....+.+.|++++|+..|++....+|. +...+... . +. ..........+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~-----~-------------~~-~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNID--RTEMYYWT-----N-------------VD-KNSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH--HHHHHHHH-----H-------------SC-TTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHh-----h-------------hc-chhhhhHHHHHHHHHH
Confidence 34444556677888888888888888877654 33333320 0 00 0001112233446667
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC--HhH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK--MTD 296 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~--~~~ 296 (638)
|.+.|++++|+..|++..+..|.+...|..+...|...|++++|...|++..+.. +.+..+|..+...|...|. ...
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777777777766666677777777777777777777777777777654 3456666666666655543 333
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (638)
+...++.... ..|....+..+...+...|++++|...|++..+. .|+......+..
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l~~ 198 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 4444444331 2222233334455556667777777777777765 566655554443
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-07 Score=91.60 Aligned_cols=226 Identities=7% Similarity=0.012 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---CCHH
Q 006630 365 DRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE--ELEECVELMGEMRKIGCVPDVSNYNVVIRLA----CKL---GELK 435 (638)
Q Consensus 365 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~ 435 (638)
++|+++++.++..++. +...|+.--..+...+ .+++++++++.+...+ +.+..+|+.--..+ .+. ++++
T Consensus 50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 3444444444443221 2233333333444444 5555555555554443 23333333322222 333 5677
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC------HH
Q 006630 436 EAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLI--EACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK------VE 507 (638)
Q Consensus 436 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~------~~ 507 (638)
+++.+++.+.+.+ +.+..+|+.-...+.+.|.++ +++++++++++.+ +-+...|..-...+.+.+. ++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d---~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD---LKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhccccchhhhHH
Confidence 8888888877766 667777777777777777776 7888888888776 3666777666655666665 77
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhcCHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE-ACSYCLDMMDAD--VMPQPDTFAKLMRGLKKLYNRQIAAEITE 584 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~A~~~~~ 584 (638)
++.+.+++++...+. |...|+.+...+.+.|+..+ +..++.++.+.+ -..++..+..+..++.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 888888888776433 77778888777877777444 445666555422 12356677778888888888888888888
Q ss_pred HHHH-HHHhccccc
Q 006630 585 KVRK-MAAERQITF 597 (638)
Q Consensus 585 ~~~~-~~p~~~~~~ 597 (638)
++.+ .+|.+...+
T Consensus 283 ~l~~~~Dpir~~yW 296 (306)
T 3dra_A 283 LLKSKYNPIRSNFW 296 (306)
T ss_dssp HHHHTTCGGGHHHH
T ss_pred HHHhccChHHHHHH
Confidence 8876 677765543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=8.4e-09 Score=110.72 Aligned_cols=162 Identities=9% Similarity=-0.026 Sum_probs=106.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 510 (638)
.|++++|+..|++..+.. +.+...|..+...|...|++++|++.|++..+.. +.+...+..+...+...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 366777777777776654 4456777777888888888888888888887765 345667777777788888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh---cCHHHHHHHHHHHH
Q 006630 511 DVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL---YNRQIAAEITEKVR 587 (638)
Q Consensus 511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~~A~~~~~~~~ 587 (638)
+.++++++.. +.+...|..+..+|...|++++|.+.+++.++.. ..+...+..+...+... |++++|.+.+++++
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 8888877763 2256677778888888888888888888877642 22456677777788888 88888888888888
Q ss_pred HHHHhcccccc
Q 006630 588 KMAAERQITFK 598 (638)
Q Consensus 588 ~~~p~~~~~~~ 598 (638)
+.+|++...+.
T Consensus 156 ~~~p~~~~~~~ 166 (568)
T 2vsy_A 156 AQGVGAVEPFA 166 (568)
T ss_dssp HHTCCCSCHHH
T ss_pred hcCCcccChHH
Confidence 88887766553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.97 E-value=3.9e-07 Score=87.93 Aligned_cols=222 Identities=7% Similarity=0.011 Sum_probs=138.3
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHhchhCCCCCCHHHHHHHHHHH----HhC-
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR--MVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL----CKN- 222 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~- 222 (638)
+....++|+.+++.+...+|. ...+|+.--..+...+ .+++++++++.+.... +-+..+|+.--..+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~--~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 45 AEEYSERALHITELGINELAS--HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHHHHCcH--HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcc
Confidence 334446888888888888776 6667777777777777 8888888888877654 34455666554444 444
Q ss_pred --CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-----
Q 006630 223 --SSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV--EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK----- 293 (638)
Q Consensus 223 --g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~----- 293 (638)
+++++++.+++.+.+..|.|-.+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence 67788888888887777778888887777777777777 7777777777765 3466666665555555554
Q ss_pred -HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 294 -MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEE-ANRAFVEMERSG--CEADVVTYTTLISGFCKSRKIDRCYE 369 (638)
Q Consensus 294 -~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 369 (638)
++++++.++.++...+. |...|+.+...+.+.|+... +..+..++.+.+ -..+...+..+...|.+.|+.++|++
T Consensus 201 ~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 55556665555554332 55555555555555554222 333444333221 02244555555555555555555555
Q ss_pred HHHHHHH
Q 006630 370 ILDSMIQ 376 (638)
Q Consensus 370 ~~~~m~~ 376 (638)
+++.+.+
T Consensus 280 ~~~~l~~ 286 (306)
T 3dra_A 280 VYDLLKS 286 (306)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-06 Score=88.58 Aligned_cols=369 Identities=9% Similarity=0.008 Sum_probs=207.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHhchhC-CCC-CCHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM-VKKAIEVLDEMPKY-GCE-PDEFVFGC 214 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-g~~-~~~~~~~~ 214 (638)
..+|...+..|-. |+++.+..+|++....- |+...|..-+....+.+. .+....+|+..+.. |.. .+...|..
T Consensus 15 R~vyer~l~~~P~-~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 15 SAIMEHARRLYMS-KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHT-TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHCCC-CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3445555555544 77888888888877643 477777777776666553 35566677766543 433 35667777
Q ss_pred HHHHHH----hCCCHHHHHHHHHHHhccCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 215 LLDALC----KNSSVKEAAKLFDEMRERFKPS-L-RHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 215 li~~~~----~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
.+..+. ..|+++.+..+|++.... |+. . ..|...... .+......+..++.+..
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~------------------ 150 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENF-ELELNKITGKKIVGDTL------------------ 150 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH------------------
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh------------------
Confidence 666554 235677888888887663 322 1 122222111 11111112222222111
Q ss_pred HHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc--C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 289 AQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRM--E-----KMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~--g-----~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
+.+..|..+++.+...-...+...|...++.-... | ..+.+..+|+++.... +.+...|...+.-+.+.
T Consensus 151 ---~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~ 226 (493)
T 2uy1_A 151 ---PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGI 226 (493)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 12223333333332210001223444444332211 0 0344566777776643 44567777777777777
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHH
Q 006630 362 RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIG---------C---VPDVSNYNVVIRLAC 429 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~---~~~~~~~~~li~~~~ 429 (638)
|+.++|..++++.... |....+.. .+....+.++. ++.+.+.- . .....+|...+..+.
T Consensus 227 ~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~ 297 (493)
T 2uy1_A 227 GQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVL 297 (493)
T ss_dssp TCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHH
Confidence 8888888888887776 33222211 11111111111 22221110 0 111245666777777
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHH
Q 006630 430 KLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG-QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEM 508 (638)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 508 (638)
+.+..+.|..+|+.. ... ..+...|...+..-.. .++.+.|..+|+...+... .+...+...++...+.|+.+.
T Consensus 298 r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~---~~~~~~~~yid~e~~~~~~~~ 372 (493)
T 2uy1_A 298 KKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP---DSTLLKEEFFLFLLRIGDEEN 372 (493)
T ss_dssp HHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHH
T ss_pred HcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHH
Confidence 788899999999999 321 2344555433332222 3369999999999988642 233445667777788999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 509 AKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 509 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
|+.+|+.+. .....|...+..-...|+.+.+..+++++..
T Consensus 373 aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 373 ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999873 2577899888888888999999998888764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.6e-09 Score=113.14 Aligned_cols=173 Identities=8% Similarity=-0.098 Sum_probs=146.7
Q ss_pred HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 359 CKSRKIDRCYEILDSMI--------QRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACK 430 (638)
Q Consensus 359 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 430 (638)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..+..+|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999998 432 2356788888999999999999999999998864 5678889999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 510 (638)
.|++++|+..|++..+.+ +.+...|..+...|.+.|++++ ++.|+++++.+ +.+...+..+..++.+.|++++|.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~---P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN---DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC---CchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999876 5577899999999999999999 99999999876 456778999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHccCC
Q 006630 511 DVWSCIVTKGCELN-VYAWTIWIHSLFSNGH 540 (638)
Q Consensus 511 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~ 540 (638)
+.|+++++. .|+ ...|..+..++...|+
T Consensus 555 ~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 999999875 454 5677788888877665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=5.4e-08 Score=90.48 Aligned_cols=189 Identities=11% Similarity=0.045 Sum_probs=130.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCC-CCH-HHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGCE-PDE-FVFG 213 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-~~~-~~~~ 213 (638)
+...+..+...+.+.|++++|+..|+++....|..+. ...+..+..++.+.|++++|+..|+++.+.... +.. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3455666778888999999999999999988775433 467788889999999999999999998875311 111 2444
Q ss_pred HHHHHHHh------------------CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006630 214 CLLDALCK------------------NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE 275 (638)
Q Consensus 214 ~li~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 275 (638)
.+..++.+ .|++++|...|+++.+..|.+...+........ +...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~~----- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRLA----- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHHH-----
Confidence 45555443 567888888888887776666655543322111 001110
Q ss_pred CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 276 PDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--ANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 276 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
.....+...|.+.|++++|...|+.+++...... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123456778888999999999998887632211 2467778888999999999999998887763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.94 E-value=3.7e-08 Score=91.58 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006630 386 YLHIMLAHEKKEELEECVELMGEMRKIGCV-P-DVSNYNVVIRLACKLGELKEAVNVWNEMEAA 447 (638)
Q Consensus 386 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 447 (638)
+..+...+...|++++|...|+.+.+.... + ....+..+..+|.+.|++++|+..|+++.+.
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 334444455555555555555555543211 1 1234444455555555555555555555543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-08 Score=96.21 Aligned_cols=161 Identities=9% Similarity=-0.061 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHH-HHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGT-LKALL 497 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~-~~~ll 497 (638)
..+..+...+.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|...++++.... |+... .....
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~----p~~~~~~~~~~ 192 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD----QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG----CSHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh----cchHHHHHHHH
Confidence 334444444555555555555555555443 3344455555555555555555555555544432 22221 11111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhhc
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ---PDTFAKLMRGLKKLY 574 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g 574 (638)
..+...++.++|...+++++... +.+...+..+...|...|++++|+..|+++++. .|+ ...+..++..+...|
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX--DLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--ccccccchHHHHHHHHHHHcC
Confidence 22334444444555555554442 123444555555555555555555555555443 222 334455555555555
Q ss_pred CHHHHHHHHHHHH
Q 006630 575 NRQIAAEITEKVR 587 (638)
Q Consensus 575 ~~~~A~~~~~~~~ 587 (638)
+.+.|...+++.+
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 5555555555444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.4e-08 Score=88.88 Aligned_cols=162 Identities=11% Similarity=0.080 Sum_probs=109.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH-H
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA-L 219 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~ 219 (638)
+..+...+.+.|++++|...|++....+|. +...+..+...+...|++++|+..|+.+.... |+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQS--RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT--SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 445566777888888888888887776655 66777778888888888888888888876653 344433332212 1
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHhHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP-DIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
...+....|...|++..+..|.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 122233346777777766666677777778888888888888888888777664222 2456777777777777777777
Q ss_pred HHHHHHHH
Q 006630 299 ELLKEMRR 306 (638)
Q Consensus 299 ~~~~~~~~ 306 (638)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-08 Score=94.11 Aligned_cols=167 Identities=13% Similarity=0.075 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.+...+..+...+.+.|++++|...|++....+|. +...+..+...+...|++++|+..++++... .|+......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~ 189 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGL 189 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHH
Confidence 345566777888888889999999999998888776 6778888888888999999999999888766 355543333
Q ss_pred H-HHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcC
Q 006630 215 L-LDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFE-PDIVVYNNLLSGYAQMG 292 (638)
Q Consensus 215 l-i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g 292 (638)
. ...+.+.++.++|...|++.....|.+...+..+...|...|++++|...|.++.+.... .+...+..++..+...|
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2 233556677788888888887777888888888888888899999999888888876321 12567788888888888
Q ss_pred CHhHHHHHHHHHH
Q 006630 293 KMTDAFELLKEMR 305 (638)
Q Consensus 293 ~~~~a~~~~~~~~ 305 (638)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888887777654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=89.42 Aligned_cols=162 Identities=11% Similarity=-0.028 Sum_probs=103.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH-
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS- 499 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~- 499 (638)
+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..|+++.... |+......+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY----QDNSYKSLIAKLE 83 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc----CChHHHHHHHHHH
Confidence 3444556677777788877777766554 4556677777777777888888887777765543 333222211111
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~ 578 (638)
+...+...+|...++++++... -+...+..+..++...|++++|+..|+++++....+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1122233346777777776522 246777777788888888888888888777642211 24467777777777888888
Q ss_pred HHHHHHHHHH
Q 006630 579 AAEITEKVRK 588 (638)
Q Consensus 579 A~~~~~~~~~ 588 (638)
|...+++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777664
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.7e-08 Score=82.91 Aligned_cols=107 Identities=11% Similarity=0.022 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 569 (638)
...+......+.+.|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..|++.++.. ..+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 4467778888999999999999999998874 3367888899999999999999999999988752 3356778899999
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcccccc
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAERQITFK 598 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 598 (638)
+...|++++|++.++++++++|+++.+..
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~ 119 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEARE 119 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 99999999999999999999999887643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=7.8e-09 Score=89.29 Aligned_cols=82 Identities=6% Similarity=-0.115 Sum_probs=36.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK 293 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 293 (638)
.+...|.+.|++++|++.|++..+..|.+..+|..+...|.+.|++++|...|++..+.. +-+..+|..+...|.+.|+
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 114 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDV 114 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 344444444444444444444444334444444444444444444444444444444432 2233444444444444444
Q ss_pred HhH
Q 006630 294 MTD 296 (638)
Q Consensus 294 ~~~ 296 (638)
+++
T Consensus 115 ~~~ 117 (150)
T 4ga2_A 115 TDG 117 (150)
T ss_dssp SSS
T ss_pred hHH
Confidence 433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.2e-08 Score=98.08 Aligned_cols=199 Identities=12% Similarity=0.027 Sum_probs=101.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006630 326 MEKMEEANRAFVEMERSGCEADVVTYTTLISGFCK-SRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVE 404 (638)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 404 (638)
.|++++|.+++++..+.. +. .+.. .+++++|...|.+. ...+...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 355666666666655431 10 1222 35566666655543 334556677777777
Q ss_pred HHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 006630 405 LMGEMRKI----GCVP-DVSNYNVVIRLACKLGELKEAVNVWNEMEAA----SLSPG--TDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 405 ~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~ 473 (638)
.+.+..+. +-.. -..+|+.+...|.+.|++++|+..|++..+. | .+. ..+++.+...|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 66665432 1000 1235555666666666666666666655432 1 111 2345555556655 6666666
Q ss_pred HHHHHHHhCCCCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHH
Q 006630 474 EYFKEMVGRGLLSAP---QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN-VYAWTIWIHSLFSNGHVKEAC 545 (638)
Q Consensus 474 ~~~~~m~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~ 545 (638)
..|++.+........ ...++..+...+.+.|++++|+..|+++++. +..+. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666553210000 0234555555666666666666666665543 11111 123444445555556666666
Q ss_pred HHHHHHH
Q 006630 546 SYCLDMM 552 (638)
Q Consensus 546 ~~~~~m~ 552 (638)
..|++.+
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666655
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.83 E-value=8e-08 Score=94.10 Aligned_cols=166 Identities=10% Similarity=-0.056 Sum_probs=83.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCCc--HHHHHHHHH
Q 006630 427 LACKLGELKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL-SAPQ--YGTLKALLN 498 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~p~--~~~~~~ll~ 498 (638)
.|...|++++|...|.+..+. +-.+ -..+|+.+...|...|++++|+..|++.+..... ..+. ..++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455556666666666554332 1000 0235555666666666666666666655432100 0111 234555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCE---L--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQ-PDTFAKLMR 568 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~t~~~ll~ 568 (638)
.|.. |++++|+..|+++++.... + ...++..+...|.+.|++++|+..|++.++. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 5555 6666666666665543100 0 1344555666666666666666666665431 11111 123444455
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.+...|+++.|...+++++ ++|+..
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 5555566666666666666 655543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.6e-08 Score=102.41 Aligned_cols=154 Identities=9% Similarity=-0.033 Sum_probs=102.8
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006630 151 MRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAK 230 (638)
Q Consensus 151 ~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 230 (638)
.|++++|...|++..+.+|. +...+..+...+...|++++|++.|++..+.. +.+...+..+...|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ--DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 36677788888777776654 56677777777888888888888888777654 4456777778888888888888888
Q ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHc
Q 006630 231 LFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM---GKMTDAFELLKEMRRK 307 (638)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 307 (638)
.|++..+..+.+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+...+... |+.++|.+.+++..+.
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888776667777788888888888888888888888877664 34566777777788887 8888888888877766
Q ss_pred C
Q 006630 308 G 308 (638)
Q Consensus 308 g 308 (638)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-08 Score=86.08 Aligned_cols=117 Identities=10% Similarity=-0.063 Sum_probs=94.7
Q ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 475 YFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 475 ~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.|++++... +.+...+..+...+...|++++|...|++++... +.+...|..+..+|...|++++|+..|+++++.
T Consensus 9 ~~~~al~~~---p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEIS---SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTCC---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCC---HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344554443 2345567777888899999999999999998863 337788889999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
. ..+...+..+..++...|++++|+..++++++++|+++..
T Consensus 85 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 D-IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 2 2346778889999999999999999999999999988766
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.1e-07 Score=81.94 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE----ELEECVELMGEMRKIGCVPDVSNYN 422 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 422 (638)
+...+..|...|...+++++|++.|++..+.| +...+..+...|.. + +.++|.++|++..+.+ +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 34444444444444444444444444444432 23333333333333 3 4444444444443322 233333
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhC
Q 006630 423 VVIRLACK----LGELKEAVNVWNEMEAASLS-PGTDSFVVMVHGFLG----QGCLIEACEYFKEMVGR 482 (638)
Q Consensus 423 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 482 (638)
.|..+|.. .+++++|+..|++..+.+.. .+...+..|...|.. .+++++|+.+|++..+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 33333333 34444444444444443300 013344444444444 34444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=4.8e-06 Score=80.66 Aligned_cols=168 Identities=13% Similarity=0.040 Sum_probs=123.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc----HHHHH
Q 006630 424 VIRLACKLGELKEAVNVWNEMEAASL-SPGT----DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ----YGTLK 494 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~ 494 (638)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..|+++...... .++ ..++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~ 159 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHH
Confidence 36678889999999999998876431 1221 12334666677788999999999999884321 122 33678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTK-----GCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMD----ADVMPQ-PDTF 563 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~ 563 (638)
.+...|...|++++|..+|+++++. +..+. ..+|..+..+|.+.|++++|+.++++.++ .+..+. ...|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888899999999999999998742 11222 23678888999999999999999988764 222232 5678
Q ss_pred HHHHHHHHhhc-CHHHHHHHHHHHHHHHHh
Q 006630 564 AKLMRGLKKLY-NRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 564 ~~ll~~~~~~g-~~~~A~~~~~~~~~~~p~ 592 (638)
..+..++.+.| ++++|.+.+++++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 88888999999 469999999999887653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.8e-07 Score=81.30 Aligned_cols=175 Identities=8% Similarity=0.011 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR----KIDRCYEILD 372 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~ 372 (638)
|.+.|++..+.| +...+..|...|...+++++|...|++..+.| +...+..|...|.. + ++++|+++|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444444444432 44555555555555666666666666655543 44555555555554 4 5666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q 006630 373 SMIQRGILPNQLTYLHIMLAHEK----KEELEECVELMGEMRKIGCV-PDVSNYNVVIRLACK----LGELKEAVNVWNE 443 (638)
Q Consensus 373 ~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~ 443 (638)
+..+.| +...+..+...+.. .+++++|.++|++..+.+.. .+...+..|..+|.. .+++++|...|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665543 44455555555554 56666777766666655411 115556666666666 6677777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCC
Q 006630 444 MEAASLSPGTDSFVVMVHGFLGQ-G-----CLIEACEYFKEMVGRG 483 (638)
Q Consensus 444 m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~ 483 (638)
..+. +.+...+..|...|... | +.++|+.+|+...+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7665 23444666666666542 2 6777777777777766
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.4e-08 Score=95.32 Aligned_cols=191 Identities=8% Similarity=-0.054 Sum_probs=121.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q 006630 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496 (638)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 496 (638)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+...|...|++++|+..+++.++.. +.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHH
Confidence 44566667777788888888888888877764 4467778888888888888888888888887765 3556677777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcC
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNV-YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYN 575 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~ 575 (638)
..++...|++++|...|+++.+.. |+. ..+...+....+. .++... .........++......+. .+. .|+
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~-~l~-~~~ 150 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLT-RLI-AAE 150 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHH-HHH-HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHH-HHH-HHH
Confidence 888888888888888888877651 110 0111111111111 111111 1222223333444433332 232 588
Q ss_pred HHHHHHHHHHHHHHHHhccccc----chhhhh-hhhhhHHHHHhhhhhh
Q 006630 576 RQIAAEITEKVRKMAAERQITF----KMYKRR-GERDLKEKAKKQVDGR 619 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~~~----~~y~~~-g~~~~A~~~~~~~~~~ 619 (638)
+++|.+.++++++.+|++.... .++... +.+++|.++|++..+.
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 151 RERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8889988888888888776553 344444 7788888888876553
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.1e-07 Score=84.28 Aligned_cols=128 Identities=9% Similarity=-0.082 Sum_probs=59.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN 538 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 538 (638)
+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|+++++.. +.+...|..+..+|...
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHc------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHc
Confidence 3344444444444444444331 2333444444444444455555555554444432 11334444444555555
Q ss_pred CCHHHHHHHHHHHHhCC--------------CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 539 GHVKEACSYCLDMMDAD--------------VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~~--------------~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
|++++|+..|+++++.. ..|+ ...+..+..++...|++++|...++++++..|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 55555555555444321 0111 1345555555555555555555555555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-06 Score=85.13 Aligned_cols=163 Identities=10% Similarity=-0.017 Sum_probs=124.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHH
Q 006630 458 VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYG----TLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAW 528 (638)
Q Consensus 458 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~ 528 (638)
..+..+...|++++|..++++....... .|+.. .+..+...+...|++++|...|+++.+... .++ ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3467788999999999999999885421 23322 233466667778899999999999988522 223 3368
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMD----A-DVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------ 596 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~----~-~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------ 596 (638)
+.+..+|...|++++|+.+|+++++ . +..+. ..++..+...|.+.|++++|...+++++++.++....
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999874 2 21222 2368899999999999999999999999999886432
Q ss_pred c----chhhhhhh-hhhHHHHHhhhhhhhh
Q 006630 597 F----KMYKRRGE-RDLKEKAKKQVDGRKR 621 (638)
Q Consensus 597 ~----~~y~~~g~-~~~A~~~~~~~~~~~~ 621 (638)
+ .+|.+.|+ +++|.+.+++.....+
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1 57888995 6999999988555444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=1e-06 Score=85.46 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCc--H
Q 006630 420 NYNVVIRLACKLGELKEAVNVWNEMEAASLSPGT------DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQ--Y 490 (638)
Q Consensus 420 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~--~ 490 (638)
.+...+..+...|++++|.+.+++..+.. +... ..+..+...+...|++++|+..+++........ .+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44455677888899999999888877653 2222 223445666778889999999999988643210 122 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTK-GCELN-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMPQ- 559 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~- 559 (638)
.++..+...|...|++++|...|+++.+. ...|+ ..++..+..+|...|++++|+.++++.++. +....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999999999988732 01122 257888889999999999999999887652 11111
Q ss_pred HHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHH
Q 006630 560 PDTFAKLMRGLKKLYNRQIA-AEITEKVRKMAA 591 (638)
Q Consensus 560 ~~t~~~ll~~~~~~g~~~~A-~~~~~~~~~~~p 591 (638)
..+|..+...+.+.|++++| ...+++++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~ 268 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 56788888899999999999 788888887643
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.5e-06 Score=81.79 Aligned_cols=189 Identities=8% Similarity=0.075 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 006630 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG--ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC-LIEACEY 475 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 475 (638)
+++++.+++.+.... +.+..+|+.-.-.+.+.| .+++++.+++.+.+.+ +-|...|+.-...+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 455666666666543 455666665555555666 3677777777777766 5677777777777777776 5778888
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc---
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRA--------------QKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN--- 538 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--- 538 (638)
++++++.. +-+...|+.....+.+. +.++++.+.+..++...+. |...|+.+-..+.+.
T Consensus 168 ~~~~I~~~---p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 168 TDSLITRN---FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHC---SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHC---CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCc
Confidence 88877766 35666666655555444 4477888888888776433 677777666666555
Q ss_pred --------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-----HHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 539 --------GHVKEACSYCLDMMDADVMPQPDTFAKLMRG-----LKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 539 --------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-----~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.++++++.++++++. .||. .|..+..+ ....|..++...++.++.+++|-....
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~ 311 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 311 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhH
Confidence 4578999999999865 5664 33322222 223577888999999999999965444
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=5.9e-06 Score=80.53 Aligned_cols=178 Identities=10% Similarity=-0.004 Sum_probs=120.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC-C
Q 006630 146 KSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR-MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN-S 223 (638)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-g 223 (638)
..+.+.+..++|+++++.+...+|. +..+|+.--..+...+ .+++++++++.+.... +.+..+|+.-...+.+. +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~nP~--~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMNPA--HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHhCch--hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcC
Confidence 3344445567888888888888876 6667777766777777 4888888888888764 55677787777666665 6
Q ss_pred -CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-
Q 006630 224 -SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV--------EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGK- 293 (638)
Q Consensus 224 -~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~- 293 (638)
++++++++++.+.+..+.|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~ 217 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGA 217 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc
Confidence 7788888888888887888888887766666666555 7777777777654 3466667666666655554
Q ss_pred ------HhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 006630 294 ------MTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEK 328 (638)
Q Consensus 294 ------~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 328 (638)
++++++.+++.+..... |...|+.+-..+.+.|+
T Consensus 218 ~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 218 ETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 45566666655554322 55555555544444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.1e-07 Score=81.73 Aligned_cols=103 Identities=10% Similarity=-0.022 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLM 567 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll 567 (638)
+...+..+...+.+.|++++|...|++++...+ .+...|..+..+|...|++++|+..|+++++. .| ++..|..+.
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 344566666677777777777777777776632 25667777777777777777777777777754 33 355677777
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 568 RGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 568 ~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.++...|++++|+..+++++++.|+.+
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 777777777777777777777777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.72 E-value=1.4e-07 Score=80.34 Aligned_cols=107 Identities=15% Similarity=-0.032 Sum_probs=90.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 568 (638)
+...+..+...+.+.|++++|...|+.++.... .+...|..+..+|...|++++|+..|++.++.. ..+...+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 445666777788899999999999999988742 377888999999999999999999999998753 234667888999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
++...|++++|...++++++++|+++...
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCcchH
Confidence 99999999999999999999999887663
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-06 Score=75.75 Aligned_cols=131 Identities=9% Similarity=0.001 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS 534 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 534 (638)
.|..+...+...|++++|+..|++..... +.+..++..+...+...|++++|...++++++.. +.+...|..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN---PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 44455555555666666666666655543 2344455555555556666666666666555542 2234455555555
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHH
Q 006630 535 LFSNGHVKEACSYCLDMMDADVMPQPDTF--AKLMRGLKKLYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~--~~ll~~~~~~g~~~~A~~~~~~~~~~~ 590 (638)
+...|++++|...++++++.. ..+...+ ...+..+...|++++|...+++..+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 666666666666665555431 1122223 222222444555555555555555444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=83.83 Aligned_cols=125 Identities=10% Similarity=-0.009 Sum_probs=61.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH--H
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHS-LFSNGHV--K 542 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~--~ 542 (638)
.|++++|+..+++..... +.+...+..+...+...|++++|...|+++.+... .+...|..+..+ +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHC---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchH
Confidence 344555555555554443 23344455555555555555555555555554421 134444555555 4455555 5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 543 EACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 543 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
+|+..++++++.. ..+...+..+...+...|++++|...++++++.+|+++.
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 5555555555431 112444555555555556666666666666665555443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-07 Score=83.37 Aligned_cols=165 Identities=10% Similarity=-0.086 Sum_probs=106.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--C-CCCCcHHHHHHHHHHHHHcCC
Q 006630 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG--L-LSAPQYGTLKALLNSLLRAQK 505 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~-~~~p~~~~~~~ll~~~~~~g~ 505 (638)
...|++++|.+.++.+.. ........+..+...+...|++++|+..+++..... . ..+....++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346777777775544433 112345677777777888888888888887776521 0 001234456667777888888
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhc
Q 006630 506 VEMAKDVWSCIVTK----GCEL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ----PDTFAKLMRGLKKLY 574 (638)
Q Consensus 506 ~~~A~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~t~~~ll~~~~~~g 574 (638)
+++|.+.+++.... +..| ....+..+...+...|++++|...+++.++.. -.++ ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 88888888877654 1111 23456777788888888888888888876421 0112 233567777888889
Q ss_pred CHHHHHHHHHHHHHHHHhcc
Q 006630 575 NRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~~ 594 (638)
++++|.+.+++++++..+..
T Consensus 162 ~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcC
Confidence 99999999998888776543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.7e-06 Score=77.90 Aligned_cols=126 Identities=16% Similarity=-0.048 Sum_probs=91.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 178 VILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 178 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
..+...+...|++++|+..|++.. .|+..++..+...|.+.|++++|...|++.....+.+...|..+...|...|
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 335556667788888888887764 4577777788888888888888888888777666677778888888888888
Q ss_pred CHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 006630 258 KLVEAKYVLVQMKDAGFE--------------P-DIVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 307 (638)
++++|.+.|++..+.... | ....+..+..++...|++++|.+.++...+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888887765311 1 1256667777777777777777777777765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-06 Score=76.91 Aligned_cols=128 Identities=5% Similarity=-0.092 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|..+...+...|++++|...|++.....|. +..++..+...+...|++++|+..+++..+.. +.+..++..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34556666666777777777777776666543 45566666666666666666666666665543 3345566666666
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYG--WCKEGKLVEAKYVLVQM 269 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m 269 (638)
+...|++++|...|++.....+.+...+..+..+ +...|++++|...+.+.
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666655545555555333322 55556666666655544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.4e-05 Score=77.86 Aligned_cols=172 Identities=10% Similarity=0.044 Sum_probs=129.3
Q ss_pred CCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc-C-CHHHHHH
Q 006630 188 RMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS-SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE-G-KLVEAKY 264 (638)
Q Consensus 188 ~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~ 264 (638)
+..++|+++++.++..+ +-+..+|+.--..+...| .+++++.+++.+....|.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 34467888898888775 456677888877887888 599999999999988899999999988888777 7 8899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHh--------HHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC-------H
Q 006630 265 VLVQMKDAGFEPDIVVYNNLLSGYAQMGKMT--------DAFELLKEMRRKGCDPNANSYTVLIQALCRMEK-------M 329 (638)
Q Consensus 265 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-------~ 329 (638)
+++++.+.. +-|..+|+--.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.++ +
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 999999775 457778877666666655555 778888888776443 77777777777766665 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006630 330 EEANRAFVEMERSGCEADVVTYTTLISGFCKSRK 363 (638)
Q Consensus 330 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 363 (638)
+++++.++++.... +-|...|+-+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 77777777777654 3466777766665555554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=8.3e-07 Score=73.69 Aligned_cols=109 Identities=7% Similarity=-0.014 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|......|.+.|++++|+..|++..+.+|. +...|..+..++...|++++|+..|++.++.. +.+...|..+..+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 45666667777777777777777777776654 56667777777777777777777777766653 3456667777777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
|...|++++|++.|++..+..|.+...+..|.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 77777777777777776665566666555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=3.9e-07 Score=90.29 Aligned_cols=83 Identities=8% Similarity=0.015 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhh
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYK 601 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~ 601 (638)
..|..+..+|.+.|++++|+..|+++++.. ..+...|..+..++...|++++|+..++++++++|+++.++ .+|.
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 444555555555555555555555554431 12344455555555555555555555555555555554443 3445
Q ss_pred hhhhhhhH
Q 006630 602 RRGERDLK 609 (638)
Q Consensus 602 ~~g~~~~A 609 (638)
..|++++|
T Consensus 276 ~~~~~~~a 283 (336)
T 1p5q_A 276 RIRRQLAR 283 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555555
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=4e-07 Score=82.71 Aligned_cols=158 Identities=9% Similarity=-0.063 Sum_probs=118.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHcc
Q 006630 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCEL-NVYAWTIWIHSLFSN 538 (638)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~ 538 (638)
...|++++|.++++.+.... .....++..+...+...|++++|...+++.... +..| ....+..+...+...
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHP---ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMA 79 (203)
T ss_dssp ----CHHHHHHHHHHHHTST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred cccccHHHHHHHHHHhcCCh---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Confidence 45799999999665554421 245678888889999999999999999998773 2122 345678888999999
Q ss_pred CCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----------chhhh
Q 006630 539 GHVKEACSYCLDMMDA----DVMP--QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----------KMYKR 602 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~----~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----------~~y~~ 602 (638)
|++++|...+++.++. +-.| ....+..+...+...|++++|...++++++..++..... .+|..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999987652 2111 134577888899999999999999999998876533221 57889
Q ss_pred hhhhhhHHHHHhhhhhhhhhhh
Q 006630 603 RGERDLKEKAKKQVDGRKRRAR 624 (638)
Q Consensus 603 ~g~~~~A~~~~~~~~~~~~~~~ 624 (638)
.|++++|.+.+++..+..++..
T Consensus 160 ~g~~~~A~~~~~~al~~~~~~~ 181 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARDIFAELE 181 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999666655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=9.1e-07 Score=75.19 Aligned_cols=105 Identities=13% Similarity=0.008 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCEL------N-----VYAWTIWIHSLFSNGHVKEACSYCLDMMDA-----DV 556 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~ 556 (638)
+......+.+.|++++|...|+++++..... + ...|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777776666652110 2 238888899999999999999999988863 23
Q ss_pred CCCH-HHH----HHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 557 MPQP-DTF----AKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 557 ~p~~-~t~----~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.|+. ..| .....++...|++++|+..++++++++|++....
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 6764 468 8999999999999999999999999999998874
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-06 Score=71.60 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
..+|..+...+.+.|++++|...|+++....|. +..++..+...+...|++++|+.+|+++.+.. +.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 455666666666667777777776666665543 45556666666666666666666666665543 334555566666
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (638)
.|...|++++|...|+++....|.+...+..+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 6666666666666666655544445555555444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.6e-07 Score=77.80 Aligned_cols=94 Identities=11% Similarity=-0.079 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
+..+...+.+.|++++|+..|+++.+.. +.+...|..+..+|...|++++|+..|++.....|.+...|..+..+|.+.
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3333334444444444444444444332 223344444444444444444444444444433333444444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 006630 257 GKLVEAKYVLVQMKD 271 (638)
Q Consensus 257 g~~~~A~~~~~~m~~ 271 (638)
|++++|...|++..+
T Consensus 118 g~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 118 KAPLKAKECFELVIQ 132 (151)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=6.4e-07 Score=74.36 Aligned_cols=101 Identities=11% Similarity=0.064 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006630 490 YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRG 569 (638)
Q Consensus 490 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 569 (638)
...+..+...+.+.|++++|...|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. ..+...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3456667778888899999999999888763 2367888888999999999999999999988752 2346678888889
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHh
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+...|++++|...++++++++|+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~ 104 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAE 104 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999943
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.60 E-value=7e-06 Score=79.50 Aligned_cols=131 Identities=9% Similarity=0.103 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhchhCCC---CCC--HH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITT----EVFVILMRRFASARMVKKAIEVLDEMPKYGC---EPD--EF 210 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~---~~~--~~ 210 (638)
.+...+..+...|++++|.+.+.+.....+..... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 44455666667777777777776666544321111 1122233344455566666665555443210 111 23
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHh---ccCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 211 VFGCLLDALCKNSSVKEAAKLFDEMR---ERFKPS----LRHFTSLLYGWCKEGKLVEAKYVLVQMK 270 (638)
Q Consensus 211 ~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (638)
+++.+...|...|++++|...|++.. +..+.+ ..+++.+...|...|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 45555555555555555555555543 111111 1344445555555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.3e-06 Score=80.64 Aligned_cols=199 Identities=8% Similarity=-0.082 Sum_probs=128.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHhchh------------CCCC----
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVIL-------MRRFASARMVKKAIEVLDEMPK------------YGCE---- 206 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~A~~~~~~m~~------------~g~~---- 206 (638)
..+++..|.+.|.++...+|. ....|..+ ...+.+.++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 578899999999999998876 66678776 3445554445555555554443 1210
Q ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 006630 207 ----PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPD--IVV 280 (638)
Q Consensus 207 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~ 280 (638)
--......+..++...|++++|.++|+.+....|.+. ..-.+...+.+.+++++|+..|+...... .|. ...
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 0022344566677778888888888888776544444 66666667888888888888887554321 111 235
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPN--ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTL 354 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 354 (638)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 66677778888888888888887764332143 234555666777778888888888887776 4554434333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-05 Score=77.94 Aligned_cols=181 Identities=7% Similarity=-0.050 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC-HHHHH
Q 006630 434 LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQG--CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK-VEMAK 510 (638)
Q Consensus 434 ~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~-~~~A~ 510 (638)
+++++.+++.+...+ +.+..+|+.-...+...| .+++++.+++.+.+.. +-+..+|..-.-.+...|. ++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 678999999998876 778899998888888888 4899999999999987 5788888888777888888 69999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHcc--------------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhh--
Q 006630 511 DVWSCIVTKGCELNVYAWTIWIHSLFSN--------------GHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKL-- 573 (638)
Q Consensus 511 ~~~~~~~~~~~~p~~~~~~~li~~~~~~--------------g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~-- 573 (638)
+.++.+++..+. |...|+.....+... +.++++++++.+.+.. .| |...|.-+-..+.+.
T Consensus 166 ~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 166 AFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccC
Confidence 999999987544 788888877766654 5588999999998865 45 566676555555444
Q ss_pred ---------cCHHHHHHHHHHHHHHHHhcccccc-------hhhhhhhhhhHHHHHhhhhhhhh
Q 006630 574 ---------YNRQIAAEITEKVRKMAAERQITFK-------MYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 574 ---------g~~~~A~~~~~~~~~~~p~~~~~~~-------~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
+-++++++.++++++++|++...+. .....|..+++...+.++.+..+
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred ccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 4689999999999999999866541 12245777788888888665554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-06 Score=71.63 Aligned_cols=108 Identities=16% Similarity=0.136 Sum_probs=91.2
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 487 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
+.+...+..+...+...|++++|...|++++... +.+...|..+..++...|++++|+..+++.++.. ..+...|..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 3567788888888999999999999999988873 2367888999999999999999999999998753 3357788899
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 567 MRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 567 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..++...|+++.|...+++++++.|++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 113 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLN 113 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHH
Confidence 999999999999999999999999995433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.9e-07 Score=74.61 Aligned_cols=108 Identities=7% Similarity=0.024 Sum_probs=80.9
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLM 567 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 567 (638)
.+...+..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|+..++++++.. ..+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345567777777788888888888888877652 2256777778888888888888888888877642 23566777888
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 568 RGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 568 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.++...|++++|.+.++++++.+|++...+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 121 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAA 121 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHH
Confidence 888888888888888888888888776553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.59 E-value=9.1e-07 Score=73.84 Aligned_cols=120 Identities=7% Similarity=-0.060 Sum_probs=84.7
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGC 214 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~ 214 (638)
+.+...|..+...+.+.|++++|...|++.....|. +...+..+...+...|++++|+..+++..+.. +.+..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 456677778888888888888888888887776654 56677777777777777888877777776653 345667777
Q ss_pred HHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 215 LLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 215 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
+..+|.+.|++++|...|++.....+.+...+..+...+.+.|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 7777777777777777777766554555566666666655544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.1e-06 Score=82.87 Aligned_cols=193 Identities=10% Similarity=-0.110 Sum_probs=130.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCC---------------
Q 006630 395 KKEELEECVELMGEMRKIGCVPDVSNYNVV-------IRLACKLGELKEAVNVWNEMEAASLSPG--------------- 452 (638)
Q Consensus 395 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 452 (638)
..++...|.+.|.++.+.. +.....|..+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 4567777777777776653 4445555555 3444444444555554444433 1111
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-
Q 006630 453 -------TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN- 524 (638)
Q Consensus 453 -------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~- 524 (638)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1344556777888899999999988877654 544455555667888999999999998665431 111
Q ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 525 -VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 525 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
...+..+..++...|++++|+..|++.......|. ...+.....++.+.|+.++|...+++++..+|+ +.+
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~ 243 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKV 243 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence 23677788899999999999999998875433264 335667777888999999999999999999998 554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-07 Score=79.28 Aligned_cols=121 Identities=9% Similarity=0.096 Sum_probs=95.2
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHH-HHHcCCH-
Q 006630 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNS-LLRAQKV- 506 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~-~~~~g~~- 506 (638)
...|++++|...+++..+.. +.+...|..+...|...|++++|+..|+++.... +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR---GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCCcc
Confidence 45678888888888887765 5677888888999999999999999999988876 3566677777777 7788888
Q ss_pred -HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 507 -EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 507 -~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
++|...++++++... .+...|..+..+|...|++++|...|+++++.
T Consensus 97 ~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 999999999888632 25777888889999999999999999998875
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.5e-06 Score=69.99 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q 006630 175 EVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWC 254 (638)
Q Consensus 175 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~ 254 (638)
..+..+...+...|++++|++.++++.+.. +.+..++..+...+.+.|++++|...|+++....+.+..++..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 344444445555555555555555544432 2334444555555555555555555555544444444445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006630 255 KEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 255 ~~g~~~~A~~~~~~m~~ 271 (638)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=71.68 Aligned_cols=119 Identities=12% Similarity=0.007 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
+...+..+...+...|++++|...|++.....|. +...+..+...+...|++++|+..++...+.. +.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHH
Confidence 3445666666666777777777777776665543 45566666666666666666666666665542 33455666666
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGK 258 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 258 (638)
..|.+.|++++|...|++.....+.+...+..+...+.+.|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 666666666666666666655545555666666666555554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=76.83 Aligned_cols=106 Identities=13% Similarity=0.037 Sum_probs=91.0
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMR 568 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 568 (638)
+...+..+...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|++.++.. ..+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45577778888899999999999999998873 2267888999999999999999999999998753 234778999999
Q ss_pred HHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 569 GLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 569 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
++...|++++|...++++++++|+++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~ 115 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSD 115 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHH
Confidence 9999999999999999999999998874
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.9e-07 Score=77.09 Aligned_cols=110 Identities=12% Similarity=-0.001 Sum_probs=76.9
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 440 VWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 440 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.|+++...+ +.+...+..+...+...|++++|+..|++++... +.+...+..+..++...|++++|...|++++..
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444433 3344566667777777888888888888777765 356667777777777888888888888887776
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
.. .+...|..+..+|...|++++|+..|++.++.
T Consensus 85 ~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DI-XEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp ST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 32 25667777777888888888888888777653
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.53 E-value=5.2e-07 Score=86.92 Aligned_cols=95 Identities=11% Similarity=-0.031 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...+..+...+.+.|++++|+..|++.....|. +...+..+...+...|++++|+..+++..+.. +.+...+..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344445555555555555555555555554433 34444445555555555555555555444432 223444444444
Q ss_pred HHHhCCCHHHHHHHHHHH
Q 006630 218 ALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~ 235 (638)
+|...|++++|...|++.
T Consensus 81 ~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRA 98 (281)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444455555555444443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-07 Score=85.54 Aligned_cols=118 Identities=11% Similarity=-0.046 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C--------------CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCE-L--------------NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADV 556 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 556 (638)
.+..+...+...|++++|...|+++++.... | ....|..+..+|...|++++|+..+++.++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444445555555555565555555543111 1 12677788888889999999999998888752
Q ss_pred CCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHH
Q 006630 557 MPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 557 ~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~ 610 (638)
..+...+..+..++...|+++.|.+.++++++++|+++.+. .++...|+.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33567788888889999999999999999999999887764 4566667776666
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.5e-06 Score=83.40 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ---------------YGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~---------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
...|..+...|.+.|++++|+..|++.+.... .+ ..++..+..++.+.|++++|+..+++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p---~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLE---YESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT---TCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh---ccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777788888888888888888877652 22 4678888889999999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHH-HHHHHHHHHHHHh
Q 006630 518 TKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIA-AEITEKVRKMAAE 592 (638)
Q Consensus 518 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A-~~~~~~~~~~~p~ 592 (638)
+.. +.+...|..+..+|...|++++|+..|+++++. .| +...+..+..++...|++++| ...++++++.-++
T Consensus 224 ~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 297 (336)
T 1p5q_A 224 ELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAE 297 (336)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 874 236788899999999999999999999999875 44 566788888889999999988 5677777765444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=71.80 Aligned_cols=100 Identities=13% Similarity=-0.076 Sum_probs=73.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLK 571 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~ 571 (638)
+..+...+.+.|++++|...|+++++... .+...|..+..++...|++++|+..|++.++. .| +...+..+..++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 34456677788888888888888887632 26777888888888888888888888888765 44 4567778888888
Q ss_pred hhcCHHHHHHHHHHHHHHHHhccc
Q 006630 572 KLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 572 ~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..|++++|+..++++++.+|+++.
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCCC
Confidence 888888888888888888887653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.1e-06 Score=69.37 Aligned_cols=114 Identities=10% Similarity=-0.030 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc
Q 006630 177 FVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKE 256 (638)
Q Consensus 177 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~ 256 (638)
+..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++......+.+...|..+...|...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 3344444444555555555555444332 223444444444444455555555555444443344444444444444444
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 006630 257 GKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG 292 (638)
Q Consensus 257 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 292 (638)
|++++|...|++..+.. +.+...+..+..++...|
T Consensus 94 ~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 94 NKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 44444444444444432 223333444444443333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.41 E-value=3.3e-06 Score=71.91 Aligned_cols=106 Identities=9% Similarity=0.018 Sum_probs=75.4
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 489 QYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 489 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
+...+..+...+...|++++|...|+++++. .|+ ...|..+..+|...|++++|+..+++.++.. ..+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4556666666677777777777777777664 344 5667777777788888888888887776542 22456677
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.+..++...|++++|...++++++++|+++...
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 777778888888888888888888888776554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.4e-06 Score=72.48 Aligned_cols=100 Identities=11% Similarity=0.138 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCC----HHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD--VMPQ----PDTFAK 565 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~----~~t~~~ 565 (638)
++..+.+.+.+.|++++|++.|+++++... -+...|..+..+|...|++++|+..+++.++.. ..++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 455566677777777777777777766532 246667777777777777777777777766421 1111 235666
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
+..++...|++++|++.++++++..|+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 777777778888888888888776654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=65.15 Aligned_cols=109 Identities=12% Similarity=-0.020 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..+..+...+...|++++|...|++.....|. +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 45556666666677777777777766665543 45556666666666666666666666665543 3345556666666
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
+...|++++|...|+...+..|.+...+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666666666666666555454554444433
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.38 E-value=6e-06 Score=68.32 Aligned_cols=96 Identities=14% Similarity=-0.002 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|..+...+.+.|++++|+..|++....+|. +...|..+..++...|++++|+..|++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34555556666666666666666666665543 45556666666666666666666666655543 3345555556666
Q ss_pred HHhCCCHHHHHHHHHHHhc
Q 006630 219 LCKNSSVKEAAKLFDEMRE 237 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~ 237 (638)
+...|++++|...|++..+
T Consensus 82 ~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 82 QIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHH
Confidence 6666666666666655544
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.9e-06 Score=68.60 Aligned_cols=105 Identities=8% Similarity=0.016 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKG--CELN----VYAW 528 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p~----~~~~ 528 (638)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.++++++.. ..++ ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 55566677777777777777777777655 3455666677777777777777777777776541 1111 2356
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
..+..++...|++++|++.|++.++. .||+.+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 66777788888888888888887754 56665443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.9e-06 Score=69.66 Aligned_cols=100 Identities=13% Similarity=0.039 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----HHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNV---YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ----PDTFAKLM 567 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~t~~~ll 567 (638)
.+...+...|++++|...|+.+++.... +. ..+..+..++...|++++|+..|+++++. .|+ ...+..+.
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~la 83 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHHH
Confidence 3455667788888888888887775221 22 46677778888888888888888888764 343 45677778
Q ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 568 RGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 568 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.++...|++++|...++++++..|+++...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 888888888888888888888888776553
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.34 E-value=1.4e-05 Score=69.76 Aligned_cols=97 Identities=10% Similarity=-0.002 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..|+++++... .+...|..+.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 86 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA---PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 4566666777777777777777777777665 34566677777777777777777777777776532 2466677777
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 006630 533 HSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.+|...|++++|+..|++.++
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777777765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=70.90 Aligned_cols=93 Identities=8% Similarity=-0.074 Sum_probs=80.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYK 601 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~ 601 (638)
.+..+...+.+.|++++|+..|++.++. .| +...|..+..++...|++++|+..++++++++|+++..+ .+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4566778899999999999999999875 45 677888999999999999999999999999999998875 6899
Q ss_pred hhhhhhhHHHHHhhhhhhhh
Q 006630 602 RRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 602 ~~g~~~~A~~~~~~~~~~~~ 621 (638)
..|++++|.+.+++..+..+
T Consensus 97 ~~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHHC---
T ss_pred HcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999766544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=2.4e-05 Score=63.19 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQM 291 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 291 (638)
+..+...+...|++++|...|+......|.+...|..+...+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 33344444444444444444444443333344444444444444444444444444444332 12233344444444444
Q ss_pred CCHhHHHHHHHHHH
Q 006630 292 GKMTDAFELLKEMR 305 (638)
Q Consensus 292 g~~~~a~~~~~~~~ 305 (638)
|++++|.+.++...
T Consensus 86 ~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 86 NRFEEAKRTYEEGL 99 (118)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.31 E-value=6e-06 Score=70.11 Aligned_cols=97 Identities=13% Similarity=-0.086 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 289 (638)
..+..+...+.+.|++++|...|+......|.+...|..+..+|.+.|++++|...|++..... +.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 4445555566666666666666666665556666666666666666666666666666666553 334455556666666
Q ss_pred HcCCHhHHHHHHHHHHHc
Q 006630 290 QMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 290 ~~g~~~~a~~~~~~~~~~ 307 (638)
..|++++|.+.|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666665543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=3.1e-05 Score=79.49 Aligned_cols=189 Identities=9% Similarity=-0.041 Sum_probs=120.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcH
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPG----------------TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQY 490 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~ 490 (638)
.+.+.|++++|++.|..+.+..-... ..++..++..|...|++++|.+++.++...... .++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~-~~~~ 91 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ-FAKS 91 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT-SCHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-ccch
Confidence 34555666666666666654321100 123566777888888888888888776653110 1222
Q ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHh--CCC--C
Q 006630 491 G----TLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMD--ADV--M 557 (638)
Q Consensus 491 ~----~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~--~ 557 (638)
. +...+...+...|+++.|..+++..... +..+. ...+..++..|...|++++|..+++++.. .+. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 1222222333567888888888777543 22222 45677788888888999999988888754 221 2
Q ss_pred CC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------c-----chhhhhhhhhhHHHHHhhh
Q 006630 558 PQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------F-----KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 558 p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~-----~~y~~~g~~~~A~~~~~~~ 616 (638)
|. ..++..++..|...|++++|..+++++++..+..+.. + .++...|++++|.+.|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 22 3457788888888899999999999998887765432 1 4667778888888877664
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.29 E-value=5e-06 Score=72.43 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=76.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------C---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 493 LKALLNSLLRAQKVEMAKDVWSCIVTK--------G---------CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 493 ~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
+......+.+.|++++|...|.+++.. . .+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 344444555555555555555555442 0 01134678888999999999999999999998753
Q ss_pred CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 556 VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 556 ~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..+...|..+..++...|+++.|...++++++++|+++.
T Consensus 94 -p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~ 132 (162)
T 3rkv_A 94 -ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132 (162)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHH
T ss_pred -CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHH
Confidence 335778999999999999999999999999999999873
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-05 Score=67.00 Aligned_cols=107 Identities=9% Similarity=0.070 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC--ELN----VYAW 528 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~ 528 (638)
.|..+...+...|++++|+.+|++..... +.+...+..+...+...|++++|...++++..... .++ ...|
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 44555555555566666666666555543 23444555555555556666666666555554311 111 4445
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006630 529 TIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKL 566 (638)
Q Consensus 529 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 566 (638)
..+..++...|++++|...|+++.+. .|+...+..+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l 118 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 55555666666666666666665543 3444443333
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=72.98 Aligned_cols=120 Identities=12% Similarity=-0.105 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhCC
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT--------------TEVFVILMRRFASARMVKKAIEVLDEMPKYG 204 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~--------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 204 (638)
..+..+...+.+.|++++|+..|++.....|..++ ...+..+..++...|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 35666677777888888888888887776544221 1334444444444444444444444444332
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Q 006630 205 CEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKL 259 (638)
Q Consensus 205 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 259 (638)
+.+..++..+..+|...|++++|...|++.....|.+...+..+...+...++.
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 223344444444444444444444444444333333444444444444433333
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=2.3e-05 Score=83.07 Aligned_cols=170 Identities=9% Similarity=0.041 Sum_probs=137.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH
Q 006630 433 ELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC----------LIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR 502 (638)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~ 502 (638)
..++|++.++++.+.+ +-+...|+.--..+...|+ +++++++++.+.+.. +-++.+|..-...+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~---pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN---PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHH
Confidence 4467899999998876 6667788877777777777 899999999999887 4678888888888888
Q ss_pred cC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhh------
Q 006630 503 AQ--KVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG-HVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKL------ 573 (638)
Q Consensus 503 ~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~------ 573 (638)
.+ +++++.+.++++++.... +..+|+.-..++.+.| .+++++++++++++.. .-|...|......+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 88 679999999999988543 7888988888888888 8999999999988653 23566788877777664
Q ss_pred --------cCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhh
Q 006630 574 --------YNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDL 608 (638)
Q Consensus 574 --------g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~ 608 (638)
+.++++.+++.++++.+|++..++ .++.+.|++++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 668999999999999999999886 36666666544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=67.20 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
.+...|..+...+...|++++|...|++.....|. +...+..+...+...|++++|+..++...+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 34555666666666666666666666666655543 45555555556666666666666666555543 3344555555
Q ss_pred HHHHHhCCCHHHHHHHHHHHh
Q 006630 216 LDALCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~ 236 (638)
..+|...|++++|...|++..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHH
Confidence 555656666666665555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.24 E-value=7.5e-06 Score=84.76 Aligned_cols=154 Identities=10% Similarity=0.059 Sum_probs=76.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 006630 432 GELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKD 511 (638)
Q Consensus 432 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~ 511 (638)
+++++|...|+...+.. +-....|..+...|.+.|++++|+..|++.+..... .+.. .-+...
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~-~~~~--------------~~~~~~- 310 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGL--------------SEKESK- 310 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-CCSC--------------CHHHHH-
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcc-cccC--------------ChHHHH-
Confidence 34445554444332221 223456777888888888888888888888775421 1110 000000
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 512 VWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 512 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
+... -....|..+..+|.+.|++++|+..|+++++.. ..+...|..+..+|...|++++|+..++++++++|
T Consensus 311 ---~~~~----~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 311 ---ASES----FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp ---HHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred ---HHHH----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 0000 012344555555555555555555555555431 12344455555555555555555555555555555
Q ss_pred hccccc----chhhhhhhhhhHH
Q 006630 592 ERQITF----KMYKRRGERDLKE 610 (638)
Q Consensus 592 ~~~~~~----~~y~~~g~~~~A~ 610 (638)
++..++ .++.+.|++++|.
T Consensus 383 ~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 383 QNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 555443 3445555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.1e-06 Score=85.08 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...+..+...+.+.|++++|+..|++.+... |+... +...|+.+++...+ ....|..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~----p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM----GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS----CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh----ccchh-------hhhcccHHHHHHHH----------HHHHHHHHH
Confidence 4566677777788888888888888887764 54332 12223333333221 113677888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccch-----hhhhhhhh
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKM-----YKRRGERD 607 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~-----y~~~g~~~ 607 (638)
.+|.+.|++++|+..+++.++.. ..+...|..+..+|...|++++|+..++++++++|+++.+... ....+..+
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888652 2356778888889999999999999999999999998877532 23446677
Q ss_pred hHHHHHhhhhhhhhhhh
Q 006630 608 LKEKAKKQVDGRKRRAR 624 (638)
Q Consensus 608 ~A~~~~~~~~~~~~~~~ 624 (638)
++.+.|+++-+..+...
T Consensus 317 ~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 317 KQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp -----------------
T ss_pred HHHHHHHHhhCCCCCCC
Confidence 77788887766655444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=64.36 Aligned_cols=97 Identities=12% Similarity=0.073 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCC--CHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEP--DEFVFGCLL 216 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~--~~~~~~~li 216 (638)
.+|..+...+.+.|++++|...|++.....|. +...+..+...+...|++++|++.|++..+.. +. +..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 34555566666666666666666666655543 44555555666666666666666666655542 22 355555566
Q ss_pred HHHHhC-CCHHHHHHHHHHHhcc
Q 006630 217 DALCKN-SSVKEAAKLFDEMRER 238 (638)
Q Consensus 217 ~~~~~~-g~~~~A~~~~~~~~~~ 238 (638)
.++.+. |++++|.+.|+.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6666666666655544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-05 Score=69.47 Aligned_cols=138 Identities=12% Similarity=-0.011 Sum_probs=84.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HH
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLS-APQ--YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VY 526 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~p~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~ 526 (638)
++..+...+...|++++|+..+++..+..... .+. ..++..+...+...|++++|.+.++++.+... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 55666666677777777777777665432100 011 13555666677777777777777777655310 011 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMDA----DVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+..+..++...|++++|...+++.++. +..+ ....+..+...+...|++++|.+.+++++++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5666677777778888888777776542 1111 1334666777777778888888888877776543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-06 Score=70.46 Aligned_cols=94 Identities=9% Similarity=-0.071 Sum_probs=72.3
Q ss_pred HcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKG--CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIA 579 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A 579 (638)
..|++++|+..|+++++.+ .+.+...|..+..+|...|++++|+..|++.++.. +-+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888888888888753 12245678888889999999999999999988752 22467788888899999999999
Q ss_pred HHHHHHHHHHHHhcccc
Q 006630 580 AEITEKVRKMAAERQIT 596 (638)
Q Consensus 580 ~~~~~~~~~~~p~~~~~ 596 (638)
...++++++..|+++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 99999999999988765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.1e-06 Score=87.15 Aligned_cols=114 Identities=11% Similarity=-0.006 Sum_probs=71.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHH
Q 006630 499 SLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQI 578 (638)
Q Consensus 499 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~ 578 (638)
.+.+.|++++|.+.|+++++.. +.+...|..+..+|.+.|++++|+..+++.++.. ..+...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 3455677777777777776652 2246667777777777777777777777776542 2245566677777777777777
Q ss_pred HHHHHHHHHHHHHhccccc----ch--hhhhhhhhhHHHHHh
Q 006630 579 AAEITEKVRKMAAERQITF----KM--YKRRGERDLKEKAKK 614 (638)
Q Consensus 579 A~~~~~~~~~~~p~~~~~~----~~--y~~~g~~~~A~~~~~ 614 (638)
|++.++++++++|+++..+ .+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777777777766653 12 556677777777766
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=64.11 Aligned_cols=94 Identities=11% Similarity=-0.044 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEP--DIVVYNNLLSGYA 289 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~ll~~~~ 289 (638)
+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|.+.|++..+.. +. +...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence 33444444444444444444444444334444444444444444444555544444444432 11 2344444444444
Q ss_pred Hc-CCHhHHHHHHHHHHH
Q 006630 290 QM-GKMTDAFELLKEMRR 306 (638)
Q Consensus 290 ~~-g~~~~a~~~~~~~~~ 306 (638)
.. |++++|.+.++...+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TCSSCSHHHHHHHHHHGG
T ss_pred HHhCCHHHHHHHHHHHhh
Confidence 44 444444444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.21 E-value=3e-05 Score=65.83 Aligned_cols=114 Identities=12% Similarity=-0.068 Sum_probs=72.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHH
Q 006630 135 VHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLIT---TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFV 211 (638)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~ 211 (638)
+.+...+..+...+.+.|++++|...|++.....|. + ...+..+...+...|++++|+..++...+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT--PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 345667777777777888888888888777766542 2 4556666666666777777777776665542 334556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
+..+..+|...|++++|...|++.....+.+...+..+..
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 6666666666666666666666665554545555444433
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=66.29 Aligned_cols=111 Identities=9% Similarity=0.044 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc----HHHHH
Q 006630 419 SNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ----YGTLK 494 (638)
Q Consensus 419 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~ 494 (638)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|+.+++++........++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666667777777777777766654 4456666677777777777777777777766643110111 45666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
.+..++...|++++|.+.|+++.+. .|+...+..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 6667777777777777777777665 34544444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.19 E-value=9.3e-06 Score=81.33 Aligned_cols=136 Identities=13% Similarity=0.086 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006630 453 TDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWI 532 (638)
Q Consensus 453 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 532 (638)
...|..+...+.+.|++++|+..|++.++.- +... .....+ ...+. ...+...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~----------~~~~~~-------~~~~~-~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR----------AAAEDA-------DGAKL-QPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH----------HHSCHH-------HHGGG-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc----------cccChH-------HHHHH-HHHHHHHHHHHH
Confidence 4556677777777788888877777776531 1100 000111 11111 012456788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhh
Q 006630 533 HSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERD 607 (638)
Q Consensus 533 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~ 607 (638)
.+|.+.|++++|+..++++++. .| +...|..+..++...|++++|...++++++++|+++.+. .++...|+.+
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998865 44 567788888999999999999999999999999887764 3555666666
Q ss_pred hHHHH
Q 006630 608 LKEKA 612 (638)
Q Consensus 608 ~A~~~ 612 (638)
++.+.
T Consensus 359 ~a~k~ 363 (370)
T 1ihg_A 359 DKEKA 363 (370)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 66543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.4e-05 Score=69.00 Aligned_cols=131 Identities=13% Similarity=0.003 Sum_probs=101.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCC----H
Q 006630 491 GTLKALLNSLLRAQKVEMAKDVWSCIVTKGC-ELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMDAD-VMPQ----P 560 (638)
Q Consensus 491 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~ 560 (638)
.++..+...+...|++++|...++++.+... .++ ...+..+...+...|++++|...+++.++.. -.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 4667778888999999999999999876511 112 2467888999999999999999999986521 0122 4
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc------c----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 561 DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT------F----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 561 ~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
..+..+...+...|++++|.+.++++++..++.... + .+|...|++++|.+.+++..+..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 457788889999999999999999999987654321 1 588999999999999998665443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.12 E-value=8.6e-06 Score=69.19 Aligned_cols=93 Identities=16% Similarity=0.067 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH---
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-------------PDTFAKLMRGLKKLYNRQIAAEITEKVRKM--- 589 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-------------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~--- 589 (638)
..+......+...|++++|+..|++.++. .|+ ...|..+..++.+.|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34566777889999999999999999874 343 238999999999999999999999999999
Q ss_pred ----HHhccccc--------chhhhhhhhhhHHHHHhhhhhhh
Q 006630 590 ----AAERQITF--------KMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 590 ----~p~~~~~~--------~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
+|+++.++ ..+...|++++|.+.|++..+..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99998776 58899999999999999965554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.9e-06 Score=81.30 Aligned_cols=154 Identities=14% Similarity=-0.011 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHH
Q 006630 418 VSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALL 497 (638)
Q Consensus 418 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll 497 (638)
...+..+...+.+.|++++|...|++..... |+... +...|+..++...+. ...+..+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~------------~~~~~nla 237 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK------------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH------------THHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH------------HHHHHHHH
Confidence 4567777788889999999999999988753 44331 233444455443321 12667788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHH-HhhcC
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD-TFAKLMRGL-KKLYN 575 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~-~~~g~ 575 (638)
.++.+.|++++|+..++++++.. +.+...|..+..+|...|++++|+..|+++++. .|+.. .+..+.... ...+.
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHH
Confidence 88999999999999999998873 236788999999999999999999999998754 56543 344444442 34467
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 006630 576 RQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 576 ~~~A~~~~~~~~~~~p~~~~ 595 (638)
.+.+...++++++..|+++.
T Consensus 315 ~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 315 YQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHhhCCCCCCCC
Confidence 88899999999999998764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.12 E-value=7.8e-05 Score=61.57 Aligned_cols=104 Identities=11% Similarity=-0.007 Sum_probs=67.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC---HHHHHHHHHH
Q 006630 143 ALIKSLSKMRKFGAVWALMEEMRKEKPQLIT-TEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD---EFVFGCLLDA 218 (638)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~ 218 (638)
.+...+.+.|++++|...|++.....|..+. ...+..+..++...|++++|+..|+.+.+.. +.+ ..++..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHH
Confidence 4456667778888888888777776654221 1456666677777777777777777776553 222 4556667777
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFT 247 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 247 (638)
|.+.|++++|...|+.+....|.+.....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 77777777777777777665555544433
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.11 E-value=8.5e-05 Score=76.21 Aligned_cols=160 Identities=8% Similarity=0.005 Sum_probs=78.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHhchhC-CCCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLIT---------------TEVFVILMRRFASARMVKKAIEVLDEMPKY-GCEPD 208 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~---------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~~~ 208 (638)
.+.+.+.|++++|++.|..+.+..+...+ ...+..+...|...|++++|.+.+..+.+. +..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999998877654322 123455666666666666666666655432 10111
Q ss_pred H----HHHHHHHHHHHhCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 006630 209 E----FVFGCLLDALCKNSSVKEAAKLFDEMRER------FKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA--GF-- 274 (638)
Q Consensus 209 ~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~-- 274 (638)
. .+.+.+-..+...|+.+.|..+++..... ...-..++..+...|...|++++|..++.++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222223345555555555543221 1111234444555555555555555555544321 00
Q ss_pred CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 006630 275 EP-DIVVYNNLLSGYAQMGKMTDAFELLKEM 304 (638)
Q Consensus 275 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 304 (638)
.+ ...++..++..|...|++++|..++++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 00 1223444444444444444444444443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.9e-05 Score=82.15 Aligned_cols=117 Identities=9% Similarity=-0.012 Sum_probs=55.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHH
Q 006630 428 ACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507 (638)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 507 (638)
|.+.|++++|++.|++..+.. +.+...|..+...|.+.|++++|++.+++.++.. +.+..++..+..++...|+++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD---KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHH
Confidence 334455555555555555443 3334555555555555555555555555555543 233445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHccCCHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHS--LFSNGHVKEACSYCL 549 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 549 (638)
+|.+.|+++++.... +...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555555544211 22233333333 445555555555554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=2.5e-05 Score=66.22 Aligned_cols=90 Identities=12% Similarity=0.101 Sum_probs=64.6
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 006630 502 RAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH----------VKEACSYCLDMMDADVMP-QPDTFAKLMRGL 570 (638)
Q Consensus 502 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~ 570 (638)
+.+.+++|++.++..++... .+...|..+..++...|+ +++|+..|++.++. .| +...|..+..+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHHH
Confidence 44556666666666666532 256666666666666554 45888888888765 45 456788888888
Q ss_pred Hhh-----------cCHHHHHHHHHHHHHHHHhcc
Q 006630 571 KKL-----------YNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 571 ~~~-----------g~~~~A~~~~~~~~~~~p~~~ 594 (638)
... |++++|++.++++++++|+++
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 776 489999999999999999875
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=6e-05 Score=77.85 Aligned_cols=94 Identities=13% Similarity=-0.044 Sum_probs=49.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-----HHhcc
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMD-----AD-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKM-----AAERQ 594 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~~ 594 (638)
+++.|..+|...|++++|..++++.++ .| -.|+ ..+++.|...|..+|++++|+.+++++++. +|++|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 445555555555555555555555432 11 1222 223555666666666666666666666543 34444
Q ss_pred ccc-------chhhhhhhhhhHHHHHhhhhhhh
Q 006630 595 ITF-------KMYKRRGERDLKEKAKKQVDGRK 620 (638)
Q Consensus 595 ~~~-------~~y~~~g~~~~A~~~~~~~~~~~ 620 (638)
... ..+..+|++++|+.+|+++.+.-
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 34555666666666666655444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.99 E-value=8.3e-05 Score=76.86 Aligned_cols=138 Identities=7% Similarity=-0.152 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHH
Q 006630 138 YDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLD 217 (638)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 217 (638)
...|..+...|.+.|++++|+..|++.....|..... .-+...+ .. .....+|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~--------------~~~~~~~----~~----~~~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL--------------SEKESKA----SE----SFLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC--------------CHHHHHH----HH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC--------------ChHHHHH----HH----HHHHHHHHHHHH
Confidence 3456667777777777777777777776655442210 0000000 00 001345555566
Q ss_pred HHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHH
Q 006630 218 ALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDA 297 (638)
Q Consensus 218 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 297 (638)
+|.+.|++++|+..|++.....+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++.+.++.+++
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666555555566666666666666666666666666665543 22344555555555555555554
Q ss_pred H
Q 006630 298 F 298 (638)
Q Consensus 298 ~ 298 (638)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.1e-05 Score=64.23 Aligned_cols=103 Identities=13% Similarity=0.053 Sum_probs=67.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGR--------GLL-------SAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK 519 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~-------~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 519 (638)
.+......+.+.|++++|+..|.+.+.. ... .+.+...+..+..++.+.|++++|+..++++++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4444555555555666655555555543 000 0123356777777888888888888888888876
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006630 520 GCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560 (638)
Q Consensus 520 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 560 (638)
. +.+...|..+..+|...|++++|+..|++.++. .|+.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~ 130 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA 130 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence 3 225677888888888888888888888888764 4553
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.92 E-value=9.2e-05 Score=74.05 Aligned_cols=138 Identities=12% Similarity=-0.013 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHH
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDA 218 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 218 (638)
..|..+...+.+.|++++|+..|++.....+.. ......+ ...+.. +.+..+|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~-------------~~~~~~~-------~~~~~~-~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGS-------------RAAAEDA-------DGAKLQ-PVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-------------HHHSCHH-------HHGGGH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC-------------ccccChH-------HHHHHH-HHHHHHHHHHHHH
Confidence 346777788888888888888888776521100 0000000 000010 1234556666666
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAF 298 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 298 (638)
|.+.|++++|+..+++..+..+.+...|..+..+|...|++++|++.|++..+.. +.+...+..+...+...++.+++.
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666665555566666666666666666666666666666543 224555555555555555555554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00021 Score=57.62 Aligned_cols=86 Identities=14% Similarity=0.021 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVR 587 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~ 587 (638)
.|...|+++++.. +.+...|..+..+|...|++++|+..|++.++.. ..+...|..+..++...|++++|+..+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777777653 2367788888888999999999999998888652 2346678888888999999999999999999
Q ss_pred HHHHhccc
Q 006630 588 KMAAERQI 595 (638)
Q Consensus 588 ~~~p~~~~ 595 (638)
++.|++..
T Consensus 81 ~~~~~~~~ 88 (115)
T 2kat_A 81 AAAQSRGD 88 (115)
T ss_dssp HHHHHHTC
T ss_pred Hhcccccc
Confidence 99887543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.8e-05 Score=63.24 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHH
Q 006630 432 GELKEAVNVWNEMEAAS--LSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 432 g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A 509 (638)
|++++|+..|++..+.+ -+.+...|..+...|...|++++|+..|++.++.. +.+..++..+..++...|++++|
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF---PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHcCCHHHH
Confidence 44445555555544432 01222344444455555555555555555554443 22334444444445555555555
Q ss_pred HHHHHHHHH
Q 006630 510 KDVWSCIVT 518 (638)
Q Consensus 510 ~~~~~~~~~ 518 (638)
...|++.+.
T Consensus 81 ~~~~~~al~ 89 (117)
T 3k9i_A 81 VELLLKIIA 89 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0008 Score=71.19 Aligned_cols=134 Identities=8% Similarity=-0.014 Sum_probs=89.7
Q ss_pred ChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhC
Q 006630 153 KFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARM----------VKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKN 222 (638)
Q Consensus 153 ~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 222 (638)
..++|++.++.+...+|. +..+|+.--..+...++ ++++++.++.+.+.. +-+..+|+.-...+.+.
T Consensus 44 ~~eeal~~~~~~l~~nP~--~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 44 LDESVLELTSQILGANPD--FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHCch--hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 345778888888888776 56667665555555555 677777777776654 45566777666666677
Q ss_pred C--CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006630 223 S--SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG-KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQ 290 (638)
Q Consensus 223 g--~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 290 (638)
| +++++++.++++.+..+.|..+|+.-...+.+.| .++++++.++++.+.. +-|...|+.....+.+
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHh
Confidence 7 5577777777777666667777777766666666 6677777777776654 3455666665555544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.86 E-value=6.5e-06 Score=66.13 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc------cccc-
Q 006630 525 VYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER------QITF- 597 (638)
Q Consensus 525 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~- 597 (638)
...|..+...+...|++++|+..|++.++.. ..+...|..+..++...|++++|+..++++++++|++ ...+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4455556666666666666666666665531 2245556666666666666666666666666666665 2221
Q ss_pred ---chhhhhhhhhhHHHHHhh
Q 006630 598 ---KMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 598 ---~~y~~~g~~~~A~~~~~~ 615 (638)
.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 344455555555544444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00034 Score=72.26 Aligned_cols=132 Identities=15% Similarity=0.035 Sum_probs=86.5
Q ss_pred HHHhcCCHHHHHHHHHHHHhC--CCCC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHH
Q 006630 462 GFLGQGCLIEACEYFKEMVGR--GLLS--AP-QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-----GC-ELN-VYAWT 529 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~--~~~~--~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~-~p~-~~~~~ 529 (638)
.+..+|++++|+.++++.++. .+.. .| ...+++.|..+|...|++++|..+++++++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777766542 1110 12 2446777777888888888888888776643 21 222 34578
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh-----CCC-CCCH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhc
Q 006630 530 IWIHSLFSNGHVKEACSYCLDMMD-----ADV-MPQP-DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAER 593 (638)
Q Consensus 530 ~li~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~ 593 (638)
.|...|...|++++|..++++.++ .|- .|+. .+...+..++..++.++.|+..+.++.+..-++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~ 468 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNN 468 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888887754 231 2222 234555566778889999999999987755333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00072 Score=56.68 Aligned_cols=110 Identities=12% Similarity=-0.024 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHHH
Q 006630 468 CLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----NGHVKE 543 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 543 (638)
++++|+++|++..+.+ .|... +...|...+.+++|.+.|++..+.| +...+..+...|.. .+++++
T Consensus 10 d~~~A~~~~~~aa~~g---~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 10 DLKKAIQYYVKACELN---EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCC---CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4555666666665555 23332 3344444555555666666665542 44555555555555 556666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHH
Q 006630 544 ACSYCLDMMDADVMPQPDTFAKLMRGLKK----LYNRQIAAEITEKVRKMA 590 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~ 590 (638)
|+.+|++..+.| ++..+..|...|.. .+|+++|.++++++.+.+
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 666666665543 34445555555555 556666666666665543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.66 E-value=5.4e-05 Score=60.53 Aligned_cols=95 Identities=15% Similarity=0.071 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCC-------H
Q 006630 137 SYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPD-------E 209 (638)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~-------~ 209 (638)
+...|..+...+.+.|++++|+..|++.....|. +...+..+..++...|++++|+..+++..+.. |+ .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 3456777777888888888888888888777654 56677777777888888888888888777653 33 4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEM 235 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~ 235 (638)
..+..+..++...|+.+.|...|+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 44555555555555555555444433
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00013 Score=57.01 Aligned_cols=82 Identities=13% Similarity=0.080 Sum_probs=49.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC-CHH-HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccchhhhhhhhhhH
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMP-QPD-TFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFKMYKRRGERDLK 609 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~-t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A 609 (638)
...+...|++++|+..|+++++. .| +.. .|..+..++...|++++|.+.++++++++|+++..+. .+.+.++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~a 80 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQA----RKMVMDI 80 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH----HHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHH----HHHHHHH
Confidence 44555666677777766666653 23 344 5666666666667777777777777777666655431 1566666
Q ss_pred HHHHhhhhhh
Q 006630 610 EKAKKQVDGR 619 (638)
Q Consensus 610 ~~~~~~~~~~ 619 (638)
...+++....
T Consensus 81 ~~~~~~~~~~ 90 (99)
T 2kc7_A 81 LNFYNKDMYN 90 (99)
T ss_dssp HHHHCCTTHH
T ss_pred HHHHHHHhcc
Confidence 6666665443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00032 Score=54.96 Aligned_cols=72 Identities=11% Similarity=0.112 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+...|..+..+|...|++++|+..|+++++.. ..+...|..+..+|...|++++|++.+++++++.|++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 56677777888888888888888888877642 2235567778888888888888888888888887765443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00017 Score=61.11 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=56.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006630 466 QGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK----------VEMAKDVWSCIVTKGCELNVYAWTIWIHSL 535 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 535 (638)
.+.+++|++.+++.++.. +.+...|..+..++...++ +++|+..|+++++.... +...|..+..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~---P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 344555555555555554 2344455555555554443 45777777777765322 456677777777
Q ss_pred Hcc-----------CCHHHHHHHHHHHHhCCCCCCHHHH
Q 006630 536 FSN-----------GHVKEACSYCLDMMDADVMPQPDTF 563 (638)
Q Consensus 536 ~~~-----------g~~~~A~~~~~~m~~~~~~p~~~t~ 563 (638)
... |++++|++.|+++++. .|+...|
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y 127 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHY 127 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHH
Confidence 665 4889999999988865 6765444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00035 Score=56.29 Aligned_cols=76 Identities=11% Similarity=0.011 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
+..|++..+.+ +.+...|..+...|...|++++|+..|++.+... +.+...+..+..++...|++++|...|++++
T Consensus 5 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 5 TERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD---PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33444443332 2333444444444444444444444444444433 1223344444444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0011 Score=55.47 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhcCHHHHH
Q 006630 506 VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNG---HVKEACSYCLDMMDADVMP--QPDTFAKLMRGLKKLYNRQIAA 580 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~A~ 580 (638)
+..+++-|.+....+. ++..+.-.+..++++.. +.++++.++++..+.. .| +...+..+.-++.+.|++++|+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4556677777766554 68888888899999988 6679999999998753 35 3455667777889999999999
Q ss_pred HHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhhhhhhhhhhhhhhcc
Q 006630 581 EITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQVDGRKRRARQRRWG 629 (638)
Q Consensus 581 ~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 629 (638)
++++.+++.+|+|. +|..+.+.++++.++..-.+..
T Consensus 92 ~y~~~lL~ieP~n~-------------QA~~Lk~~ie~~~~kdgl~G~~ 127 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN-------------QAKELERLIDKAMKKDGLVGMA 127 (152)
T ss_dssp HHHHHHHHHCTTCH-------------HHHHHHHHHHHHHHHTTCCCSS
T ss_pred HHHHHHHhcCCCCH-------------HHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999754 4677777788777776666643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0028 Score=52.96 Aligned_cols=108 Identities=11% Similarity=-0.018 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh----cCCHHHHHH
Q 006630 259 LVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCR----MEKMEEANR 334 (638)
Q Consensus 259 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~ 334 (638)
+++|++.|++..+.| .|+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.+
T Consensus 11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 444444444444444 22222 3333333344444444444444432 33444444444444 444555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 006630 335 AFVEMERSGCEADVVTYTTLISGFCK----SRKIDRCYEILDSMIQR 377 (638)
Q Consensus 335 ~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 377 (638)
.|++..+.| +...+..|...|.. .++.++|+++|++..+.
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 555544432 34444444444444 44445555554444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0013 Score=49.99 Aligned_cols=63 Identities=17% Similarity=0.108 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
..+..+...+...|++++|...|++.....+.+...|..+...|.+.|++++|...|++..+.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444445555555555555555544444444455555555555555555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.002 Score=48.82 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchh
Q 006630 139 DVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPK 202 (638)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 202 (638)
..|..+...+.+.|++++|...|++.....|. +...+..+...+...|++++|+..|++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444555555555555555555555444432 334444444444444444444444444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00057 Score=53.18 Aligned_cols=89 Identities=11% Similarity=0.036 Sum_probs=68.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhh
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTKGCELNVY-AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPD-TFAKLMRGLKKL 573 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~ 573 (638)
....+...|++++|...|+++++.. +.+.. .|..+..+|...|++++|+..|++.++. .|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH--------
Confidence 4556778899999999999988763 22556 7888889999999999999999998865 44432 2211
Q ss_pred cCHHHHHHHHHHHHHHHHhccc
Q 006630 574 YNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 574 g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
+.+.++...++++.+.+|+++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHHhccCccccc
Confidence 6788889999999999998764
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0013 Score=64.00 Aligned_cols=73 Identities=11% Similarity=-0.062 Sum_probs=61.8
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+.+...|..+...+...|++++|...+++++.. .|+...|..+...+.-.|++++|.+.+++++.++|..+..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 446778888877777789999999999999876 4888788888888888899999999999999999987654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0018 Score=50.62 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=43.5
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.+...+..+...+...|++++|+..|+++++.... +...|..+..+|...|++++|+..|++.++
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666667777777777777777777665322 455677777777777777777777776653
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.002 Score=65.33 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHH
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMD-----AD-VMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKM 589 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~ 589 (638)
.+++.+..+|...|++++|..++++.++ .| -.|+ ..+++.|...|..+|++++|+.++++++++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 3455555566666666666666555542 12 1233 234667777777777777777777777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0048 Score=62.63 Aligned_cols=100 Identities=13% Similarity=-0.008 Sum_probs=56.0
Q ss_pred HHHcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHH
Q 006630 500 LLRAQKVEMAKDVWSCIVTK---GCELN----VYAWTIWIHSLFSNGHVKEACSYCLDMMD-----AD-VMPQ-PDTFAK 565 (638)
Q Consensus 500 ~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~-~~p~-~~t~~~ 565 (638)
+.+.|++++|+.++++.++. -+.|+ ..+++.+..+|...|++++|..+++++++ .| ..|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455555666665555433 11111 33456666666666666666666666543 12 1232 234667
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHHH-----HHhcccccch
Q 006630 566 LMRGLKKLYNRQIAAEITEKVRKM-----AAERQITFKM 599 (638)
Q Consensus 566 ll~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~ 599 (638)
|...|..+|++++|+.+++++++. +|++|...++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 777777777777777777777654 3555554433
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.014 Score=56.80 Aligned_cols=74 Identities=12% Similarity=0.041 Sum_probs=59.9
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006630 487 APQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFA 564 (638)
Q Consensus 487 ~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 564 (638)
+.+..++..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.|+++... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566777777766777799999999999998874 78778888888899999999999999988865 67776654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0039 Score=49.04 Aligned_cols=74 Identities=8% Similarity=-0.016 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD------VMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+..-+-.++..+...|+++.|+..|+.+++.. -.+...++..+..++.+.|+++.|...++++++++|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445567788888888888888888876521 123466788899999999999999999999999999987763
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.017 Score=46.35 Aligned_cols=97 Identities=10% Similarity=0.069 Sum_probs=71.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHh
Q 006630 498 NSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE---ACSYCLDMMDADVMP--QPDTFAKLMRGLKK 572 (638)
Q Consensus 498 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~ 572 (638)
+.-.....+..+++-|......|. ++..+--.+.+++.+..+..+ ++.++++..+.+ .| ...-...|.-++.+
T Consensus 9 ~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 9 NELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHH
Confidence 333344455666777776666543 677777778889998887766 888998887653 24 22335566678999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcccc
Q 006630 573 LYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 573 ~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.|+++.|+++.+.+++.+|+|..+
T Consensus 87 lg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999987654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.063 Score=50.03 Aligned_cols=107 Identities=14% Similarity=0.061 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHh-hc
Q 006630 506 VEMAKDVWSCIVTKGCELN---VYAWTIWIHSLFSN-----GHVKEACSYCLDMMDADVMP--QPDTFAKLMRGLKK-LY 574 (638)
Q Consensus 506 ~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~-~g 574 (638)
...|...++++++. .|+ -..|..+...|.+. |+.++|.+.|++.++. .| +..++......++. .|
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcC
Confidence 45677777887775 555 45788888888884 8999999999998875 45 35666667777766 48
Q ss_pred CHHHHHHHHHHHHHHHHhc-ccccchhhhhhhhhhHHHHHhhhhh
Q 006630 575 NRQIAAEITEKVRKMAAER-QITFKMYKRRGERDLKEKAKKQVDG 618 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~-~~~~~~y~~~g~~~~A~~~~~~~~~ 618 (638)
+.+.|.+.+++++..+|.. |. ..+...+..++|..+..++++
T Consensus 255 d~~~a~~~L~kAL~a~p~~~P~--~~lan~~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPESVPH--NKLLVILSQKRARWLKAHVQD 297 (301)
T ss_dssp CHHHHHHHHHHHHHCCGGGCSS--CHHHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCC--hhHHHHHHHHHHHHHHHHhHH
Confidence 8999999999999988875 44 244555666677777666543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.66 E-value=0.097 Score=58.12 Aligned_cols=46 Identities=7% Similarity=0.078 Sum_probs=25.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
....|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34456666666554332 24556666666666666666666665554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.13 Score=57.02 Aligned_cols=75 Identities=13% Similarity=0.082 Sum_probs=35.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006630 317 TVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK 396 (638)
Q Consensus 317 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 396 (638)
..++..+.+.|..++|.++.+.-. .-.......|++++|+++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 445555556666666655442111 0012234456666665553221 2444555555555555
Q ss_pred CCHHHHHHHHHHH
Q 006630 397 EELEECVELMGEM 409 (638)
Q Consensus 397 g~~~~a~~~~~~~ 409 (638)
++++.|.+.|..+
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 5555555554443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0077 Score=61.01 Aligned_cols=88 Identities=11% Similarity=-0.065 Sum_probs=54.2
Q ss_pred cCCHHHHHHHHHHHHhC-----CCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHH
Q 006630 466 QGCLIEACEYFKEMVGR-----GLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-----G-CELN-VYAWTIWIH 533 (638)
Q Consensus 466 ~g~~~~A~~~~~~m~~~-----~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~~~~~li~ 533 (638)
.|++++|+.++++.+.. |...+....+++.+..+|...|++++|+.++++++.. | ..|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666666665542 1110112345666777777777777777777776543 2 1222 345777778
Q ss_pred HHHccCCHHHHHHHHHHHHh
Q 006630 534 SLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 534 ~~~~~g~~~~A~~~~~~m~~ 553 (638)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 88888888888888777653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.016 Score=58.79 Aligned_cols=93 Identities=9% Similarity=-0.046 Sum_probs=68.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC--CCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HH
Q 006630 460 VHGFLGQGCLIEACEYFKEMVGRG--LLSAP----QYGTLKALLNSLLRAQKVEMAKDVWSCIVTK-----G-CELN-VY 526 (638)
Q Consensus 460 i~~~~~~g~~~~A~~~~~~m~~~~--~~~~p----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~-~~p~-~~ 526 (638)
+..+..+|++++|+.++++.+... +. .| ...+++.+..+|...|++++|+.++++++.. | ..|+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~l-g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERL-PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCC-CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcC-CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 444566788888888888887642 11 12 2446778888888999999999998887653 2 1222 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
+++.|...|...|++++|..+++++++
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 688889999999999999999988764
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.06 Score=41.01 Aligned_cols=68 Identities=6% Similarity=-0.000 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006630 415 VPDVSNYNVVIRLACKLGE---LKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRG 483 (638)
Q Consensus 415 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 483 (638)
+.+...+..+..++...++ .++|..+|++..+.+ +-+......+...+.+.|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445555555555543333 466666666666654 4455566666666666666666666666666655
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.03 E-value=2.4 Score=46.63 Aligned_cols=256 Identities=7% Similarity=-0.036 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHHHHHHHH
Q 006630 323 LCRMEKMEEANRAFVEMERSG--CEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGI-------LPNQLTYLHIMLAH 393 (638)
Q Consensus 323 ~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-------~p~~~t~~~ll~~~ 393 (638)
....|+.++++.+++.....+ -.+.+..-..+.-+....|..++++.++.......- .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 344566666666666544311 011122333344455566666677777766554311 01111112222222
Q ss_pred HhcCC-HHHHHHHHHHHHHCCCCCCHHH--H--HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006630 394 EKKEE-LEECVELMGEMRKIGCVPDVSN--Y--NVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGC 468 (638)
Q Consensus 394 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 468 (638)
...|. -+++.+.+..+.... +..+ . -+|...|+-.|+.+....++..+.+.. .-+..-...+.-++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence 22221 234555555555421 2111 1 122223445567676777777666532 1122222333444556788
Q ss_pred HHHHHHHHHHHHhCCCCCCCcHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 006630 469 LIEACEYFKEMVGRGLLSAPQYG--TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACS 546 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~~~--~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 546 (638)
.+.+..+.+.+.... .|... ....+.-+|+..|+.....+++..+... ...++.....+.-++...|+.+.+.+
T Consensus 540 ~e~~~~li~~L~~~~---dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 540 QELADDLITKMLASD---ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGGHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred hHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 777777777776643 23322 2223444566778877666687777653 12122222222334445666665666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhcCH-HHHHHHHHHHH
Q 006630 547 YCLDMMDADVMPQPDTFAKLMRGLKKLYNR-QIAAEITEKVR 587 (638)
Q Consensus 547 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~-~~A~~~~~~~~ 587 (638)
+++.+.+.+ .|...--..+.-+....|+. ..+.+.+.++.
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 665444432 33333222333333333332 45555655553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.059 Score=41.06 Aligned_cols=66 Identities=11% Similarity=-0.011 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 207 PDEFVFGCLLDALCKNSS---VKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 207 ~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
.|...+..+..++...++ .++|..+|++.....|.++.++..+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445555555555543333 466666666666655666666666666666666666666666666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.092 Score=43.79 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 488 PQYGTLKALLNSLLRAQ---KVEMAKDVWSCIVTKGCEL--NVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
++..+...+..++++.+ ++++++.+|+.+.+.. .| ....+-.+.-++.+.|++++|.++++.+++
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444444444444444 3334555555444432 12 223333344444555555555555555543
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.32 Score=39.64 Aligned_cols=99 Identities=10% Similarity=0.068 Sum_probs=70.9
Q ss_pred CCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc
Q 006630 522 ELNVYAWTIWIHSLFSNGHV---KEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK 598 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 598 (638)
.|+..+--.+.+++.+..+. .+++.++++....+-.-...-...|.-++.+.|+++.|+++.+.+++.+|+|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~---- 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK---- 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH----
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH----
Confidence 56666666677788877654 57888888887642111233345566689999999999999999999999754
Q ss_pred hhhhhhhhhhHHHHHhhhhhhhhhhhhhhccCCcc
Q 006630 599 MYKRRGERDLKEKAKKQVDGRKRRARQRRWGGGRS 633 (638)
Q Consensus 599 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 633 (638)
+|..+.+.++++..|..-.+.+-.++
T Consensus 112 ---------QA~~Lk~~Ie~~i~kdGliG~ai~gg 137 (144)
T 1y8m_A 112 ---------QVGALKSMVEDKIQKETLKGVVVAGG 137 (144)
T ss_dssp ---------HHHHHHHHHHHHHHHTTTTTCCCCCS
T ss_pred ---------HHHHHHHHHHHHHHHhchhhhhhhhc
Confidence 46777777887777776666544443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.055 Score=44.49 Aligned_cols=108 Identities=9% Similarity=-0.101 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH-HHHHHHHH------HHHccCCHHHHHHHHHHHHhC
Q 006630 488 PQYGTLKALLNSLLRAQKV------EMAKDVWSCIVTKGCELNV-YAWTIWIH------SLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~------~~A~~~~~~~~~~~~~p~~-~~~~~li~------~~~~~g~~~~A~~~~~~m~~~ 554 (638)
-++.+|-..+...-+.|+. +..+++|+++... ++|+. ..|...|. .+...++.++|.++|+.+++.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3445555555555555555 5666666666554 33331 11222211 122347888888888888653
Q ss_pred CCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 555 DVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 555 ~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.-.- ...|.....--.+.|+++.|++++.+++.+.|.....+
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 2222 66677777777778888888888888888887765554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.47 Score=40.64 Aligned_cols=103 Identities=11% Similarity=0.136 Sum_probs=62.6
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
+....+|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+... +..+.-.|...|+.+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 34456677777777766652 566777777777777777777777776542 3344445555666666
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 297 AFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEM 339 (638)
Q Consensus 297 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 339 (638)
-.++-+.....| -++.....+.-.|+++++.++|.+.
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 555544444432 1344444555667777777776543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.55 Score=40.21 Aligned_cols=27 Identities=4% Similarity=0.067 Sum_probs=12.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 382 NQLTYLHIMLAHEKKEELEECVELMGE 408 (638)
Q Consensus 382 ~~~t~~~ll~~~~~~g~~~~a~~~~~~ 408 (638)
+...|..+.......|+++-|.+.|..
T Consensus 33 ~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 33 DSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 334444444444444444444444444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.36 Score=44.97 Aligned_cols=85 Identities=8% Similarity=-0.030 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-C
Q 006630 469 LIEACEYFKEMVGRGLLSAPQ---YGTLKALLNSLLR-----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSN-G 539 (638)
Q Consensus 469 ~~~A~~~~~~m~~~~~~~~p~---~~~~~~ll~~~~~-----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g 539 (638)
..+|...+++.++.+ |+ -..+..+...|.. -|+.++|++.|++.++....-+..++..+.+.+++. |
T Consensus 179 l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~g 254 (301)
T 3u64_A 179 VHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLN 254 (301)
T ss_dssp HHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Confidence 466777777777765 54 4467777777777 489999999999998874332477788888888884 8
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 006630 540 HVKEACSYCLDMMDADVM 557 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~ 557 (638)
+.++|.+++++.+..+..
T Consensus 255 d~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 255 NRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHcCCCC
Confidence 899999999998876555
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.84 E-value=0.27 Score=39.54 Aligned_cols=88 Identities=11% Similarity=0.113 Sum_probs=63.0
Q ss_pred CCCCHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccc
Q 006630 521 CELNVYAWTIWIHSLFSNGHV---KEACSYCLDMMDADVMP--QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQI 595 (638)
Q Consensus 521 ~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 595 (638)
..|+..+--.+.+++.+..+. .+++.++++..+.+ | ....+-.|.-++.+.|+++.|+++.+.+++.+|+|..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 456666666677788777654 56888888887653 4 2444666777889999999999999999999998655
Q ss_pred ccchhhhhhhhhhHHHHHhhhhhhhhhh
Q 006630 596 TFKMYKRRGERDLKEKAKKQVDGRKRRA 623 (638)
Q Consensus 596 ~~~~y~~~g~~~~A~~~~~~~~~~~~~~ 623 (638)
|..+.+.++++..|.
T Consensus 114 -------------A~~Lk~~Ie~ki~kd 128 (134)
T 3o48_A 114 -------------VGALKSMVEDKIQKE 128 (134)
T ss_dssp -------------HHHHHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHHhh
Confidence 455555555555443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.73 E-value=0.24 Score=38.53 Aligned_cols=33 Identities=18% Similarity=0.107 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 242 (638)
.++..|..+|.+.|+++.|...+++.....|.+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 444444445555555555555554444333333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.97 E-value=2 Score=34.59 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=27.5
Q ss_pred HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006630 281 YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSG 343 (638)
Q Consensus 281 ~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 343 (638)
....+......|.-++-.+++..+... .+|+....-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333444444444444444444443221 23344444444445555555555555444444444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.97 E-value=9.1 Score=42.16 Aligned_cols=269 Identities=9% Similarity=0.019 Sum_probs=151.2
Q ss_pred HHHHcCCHhHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 006630 287 GYAQMGKMTDAFELLKEMRRKG--CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGC-------EADVVTYTTLISG 357 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-------~~~~~~~~~li~~ 357 (638)
+....|+.+++..++......+ -.+....-..+.-+...+|..+++..++.......- .+....-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 4556788888888877665421 112223334444556666766678887777654310 0112222333334
Q ss_pred HHhcCC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHH
Q 006630 358 FCKSRK-IDRCYEILDSMIQRGILPNQLT--YL--HIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRL--ACK 430 (638)
Q Consensus 358 ~~~~g~-~~~A~~~~~~m~~~~~~p~~~t--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~ 430 (638)
+.-.|. -+++.+.+..+.... +... .. .+...+...|+.+....++..+.+. .+..+...+.-+ +.-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhh
Confidence 443443 246677777776542 2221 22 2233345678888888888877763 233334334443 446
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHH
Q 006630 431 LGELKEAVNVWNEMEAASLSPGTDSFV---VMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVE 507 (638)
Q Consensus 431 ~g~~~~A~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 507 (638)
.|+.+.+..+.+.+.... .|.. -|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~---~d~VRraAViaLGlI~~g~~e 611 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS---NDDVRRAAVIALGFVLLRDYT 611 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTSSSCS
T ss_pred CCChHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC---cHHHHHHHHHHHHhhccCCHH
Confidence 789999999988887642 2222 232 34556778899877777888888653 233332222333444567777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006630 508 MAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHV-KEACSYCLDMMDADVMPQPDTFAKLMRGL 570 (638)
Q Consensus 508 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 570 (638)
.+.++++.+.+.+ .|.+..-.++.-+....|.. .+|+..+..+.. .+|..+-...+.++
T Consensus 612 ~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~AL 671 (963)
T 4ady_A 612 TVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIAL 671 (963)
T ss_dssp SHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHH
Confidence 7777777665543 45554445555555556554 678888888864 45555543333333
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.96 E-value=2 Score=34.58 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=93.6
Q ss_pred hcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006630 150 KMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAA 229 (638)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 229 (638)
-.|..++..++..+..... +..-+|.+|--....-+-+...++++.+-+. -| ...+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHHH
Confidence 3466677777777766543 4555666666555566666666666554321 22 12466666666
Q ss_pred HHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCC
Q 006630 230 KLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGC 309 (638)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~ 309 (638)
..+-.+.. +.......+..+...|+-++-.+++.++... .+|++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus 82 ~C~~~~n~----~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 82 ECGVINNT----LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHTTC----CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcc----hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 66554432 4556677778888888888888888886442 377888888888899999999999998888888876
Q ss_pred C
Q 006630 310 D 310 (638)
Q Consensus 310 ~ 310 (638)
+
T Consensus 157 k 157 (172)
T 1wy6_A 157 K 157 (172)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.97 Score=37.21 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCCcHH----HHHHHHH---HHHHcCCHHHHHHHHHHH
Q 006630 450 SPGTDSFVVMVHGFLGQGCL------IEACEYFKEMVGRGLLSAPQYG----TLKALLN---SLLRAQKVEMAKDVWSCI 516 (638)
Q Consensus 450 ~p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~~~p~~~----~~~~ll~---~~~~~g~~~~A~~~~~~~ 516 (638)
+.|..+|-..+....+.|++ ++.+++|++....- +|+.. .|.-+.- .+...+++++|+++|+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~---Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL---PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMA 86 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS---CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC---CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34555666666666655666 66666676666543 23211 1111110 112447888999999988
Q ss_pred HHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006630 517 VTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP 558 (638)
Q Consensus 517 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 558 (638)
++..-. =...|.....--.++|+...|.+++.+.+..+..|
T Consensus 87 ~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 87 RANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 766222 27777777777788999999999999988766444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.54 E-value=0.65 Score=37.19 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCCCC--cHHHHHHHHHHHHHcCCHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE---ACEYFKEMVGRGLLSAP--QYGTLKALLNSLLRAQKVEMA 509 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~A 509 (638)
..+.+-|.+....| .++..+-..+..++.+..+..+ ++.+++++...+ .| ....+-.+.-++.+.|++++|
T Consensus 18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~---~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 34444444443333 2444454555555555444443 555555554433 12 111222233344455555555
Q ss_pred HHHHHHHHHc
Q 006630 510 KDVWSCIVTK 519 (638)
Q Consensus 510 ~~~~~~~~~~ 519 (638)
+++++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.24 E-value=1 Score=48.57 Aligned_cols=129 Identities=12% Similarity=0.062 Sum_probs=81.9
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHhchhC------CCC-CCHH-
Q 006630 141 YRALIKSLSKMRK-FGAVWALMEEMRKEKPQLITTEVFVILMRRFASAR-MVKKAIEVLDEMPKY------GCE-PDEF- 210 (638)
Q Consensus 141 ~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~------g~~-~~~~- 210 (638)
-..|+..+...++ ++.|..+|+++...+|. .+......++..+...+ +--+|++++.+..+. ..+ .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~-~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPI-HDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCc-hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 3455566666666 57899999999888753 12211222333322222 233455555443321 111 1211
Q ss_pred ---------HHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 211 ---------VFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMK 270 (638)
Q Consensus 211 ---------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 270 (638)
..+.=.+.+...|+++.|+++-++...-.|.+-.+|-.|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 122223456678999999999999888778889999999999999999999998888874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.23 E-value=17 Score=36.66 Aligned_cols=98 Identities=11% Similarity=0.012 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC--HH
Q 006630 456 FVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQ---YGTLKALLNSLLRAQKVEMAKDVWSCIVTK----GCELN--VY 526 (638)
Q Consensus 456 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~--~~ 526 (638)
...|...|...|++.+|.+++.++...-....+. ...+...+..|...+++..|..++.++... ...|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 3456777778888888888888776421110121 234555667788889999998888887432 22222 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
.+..++..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 567777788888899998888877754
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.07 E-value=17 Score=36.56 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=33.7
Q ss_pred CChhHHHHHHHHHHhc----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhch
Q 006630 152 RKFGAVWALMEEMRKE----KPQLITTEVFVILMRRFASARMVKKAIEVLDEMP 201 (638)
Q Consensus 152 ~~~~~A~~~~~~m~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 201 (638)
+++++|++-+..+.+. +....+......++..|...++++...+.+..+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 6778887777655532 1233566777788888888888887766665544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.40 E-value=4.2 Score=43.81 Aligned_cols=65 Identities=11% Similarity=0.070 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc---------CHHHHHHHHHHHHH
Q 006630 522 ELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY---------NRQIAAEITEKVRK 588 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g---------~~~~A~~~~~~~~~ 588 (638)
+.+..-|..|+....+.++++||++.|+..+.. +-++..+..|+..|.+.+ +.+....+.=++..
T Consensus 610 kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~ 683 (754)
T 4gns_B 610 KHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKIS 683 (754)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHH
Confidence 445667999999989999999999999998864 678889999999998766 66665555555443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=25 Score=36.99 Aligned_cols=268 Identities=8% Similarity=-0.027 Sum_probs=127.3
Q ss_pred HHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhC
Q 006630 124 YYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKY 203 (638)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 203 (638)
+..|....++.+.....-+.-+..+.+.+++...+.++.. .| .+...-.....+....|+..+|......+-..
T Consensus 58 v~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p--~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 3344444455444444445556667777777666554432 12 25555555666667777777777766666555
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHH--HHHHHHHhcc------------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 204 GCEPDEFVFGCLLDALCKNSSVKEA--AKLFDEMRER------------FKPSLR-HFTSLLYGWCKEGKLVEAKYVLVQ 268 (638)
Q Consensus 204 g~~~~~~~~~~li~~~~~~g~~~~A--~~~~~~~~~~------------~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~ 268 (638)
| ...+..+..|+..+.+.|.+... ..-++.+... .+++.. ....++..+.. ...+......
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~ 207 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFART 207 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhc
Confidence 4 33445566677776665544321 1111111111 111111 11111111111 1111111110
Q ss_pred HHHCCCCCCHHH---HHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 269 MKDAGFEPDIVV---YNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSY----TVLIQALCRMEKMEEANRAFVEMER 341 (638)
Q Consensus 269 m~~~g~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 341 (638)
+.++... +...+.-+.+ .+.+.|..++....+...- +.... ..+.......+...++...+.....
T Consensus 208 -----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~ 280 (618)
T 1qsa_A 208 -----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM 280 (618)
T ss_dssp -----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH
T ss_pred -----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc
Confidence 1222221 1112222223 3667777777776543211 22222 2222222333424455556665444
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 342 SGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRK 411 (638)
Q Consensus 342 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 411 (638)
. ..+.....-.+....+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+.+
T Consensus 281 ~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 281 R--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp T--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred c--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3 233333333334445668888888888777553221 334444556677777888888887777653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=1.6 Score=43.20 Aligned_cols=70 Identities=10% Similarity=0.083 Sum_probs=49.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 006630 212 FGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-----AGFEPDIVVY 281 (638)
Q Consensus 212 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~ 281 (638)
...++..+...|++++|...+..+....|-+...|..+|.+|.+.|+..+|++.|++..+ .|+.|...+-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344566667777777777777777666677777777788888888887777777777643 4666666543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.92 E-value=18 Score=34.12 Aligned_cols=80 Identities=10% Similarity=-0.031 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKK---EELEECVELMGEMRKIGCVPDVSNYNV 423 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 423 (638)
|+..+..+...|.+.|++.+|...|-. |-.-|...+..++.-+... |...++ +.....+
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHH
Confidence 667777777788888888887765531 1111234444444333332 322221 1122222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 006630 424 VIRLACKLGELKEAVNVWNEME 445 (638)
Q Consensus 424 li~~~~~~g~~~~A~~~~~~m~ 445 (638)
++ .|.-.|++..|..+|+...
T Consensus 195 VL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HH-HHHHTTBHHHHHHHHHHHH
T ss_pred HH-HHHHhcCHHHHHHHHHHHH
Confidence 23 3555788888888877664
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.45 E-value=10 Score=43.54 Aligned_cols=149 Identities=12% Similarity=0.069 Sum_probs=96.9
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------
Q 006630 214 CLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF------------------- 274 (638)
Q Consensus 214 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------- 274 (638)
.++..+.+.+..+.+.++..-. +.+...--.+..+|...|++++|.+.|.+.-. |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 3445555566666555443322 22444444555666677777777777755321 11
Q ss_pred ----CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006630 275 ----EPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNA----NSYTVLIQALCRMEKMEEANRAFVEMERSGCEA 346 (638)
Q Consensus 275 ----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~ 346 (638)
..-..-|.-++..+.+.+.++.+.++-...++.....+. ..|..+.+.+...|++++|...+-.+.... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~ 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--L 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--H
Confidence 112235677888888999999998888777664322222 257888899999999999999998888763 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHH
Q 006630 347 DVVTYTTLISGFCKSRKIDRCYE 369 (638)
Q Consensus 347 ~~~~~~~li~~~~~~g~~~~A~~ 369 (638)
-......|+..+|..|..+.-+.
T Consensus 970 r~~cLr~LV~~lce~~~~~~L~~ 992 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKINQLLN 992 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCChhhhhC
Confidence 45677788888888888776554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.24 E-value=4.8 Score=39.84 Aligned_cols=54 Identities=7% Similarity=0.091 Sum_probs=24.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
+.++...|+++++...+..+.... +-+...|..++.+|.+.|+..+|++.|+++
T Consensus 178 ~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 178 AEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334444445555444444444331 223444445555555555555555544443
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.87 E-value=4.3 Score=30.71 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34456666777777777888888888888888888888888888877654 2333445666553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.56 E-value=25 Score=40.46 Aligned_cols=150 Identities=13% Similarity=0.034 Sum_probs=106.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH--------------------
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMR-------------------- 305 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------------------- 305 (638)
...++..+.+.+..+-+.++..-. +.+...--.+..+|...|++++|.+.|.+.-
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence 345677788889888877755432 3455555567788999999999999996531
Q ss_pred HcC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006630 306 RKG--CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV----VTYTTLISGFCKSRKIDRCYEILDSMIQRGI 379 (638)
Q Consensus 306 ~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 379 (638)
... ...-..-|..++..+-+.+.++.+.++-....+..-..+. ..|..+...+...|++++|...+-.+.....
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 111 1223445788899999999999999888776654322222 2588899999999999999999988876544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHH
Q 006630 380 LPNQLTYLHIMLAHEKKEELEEC 402 (638)
Q Consensus 380 ~p~~~t~~~ll~~~~~~g~~~~a 402 (638)
+ ...+..++..++..+..+.-
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L 990 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQL 990 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhh
Confidence 3 45677777777777765543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=85.54 E-value=8.5e-06 Score=80.41 Aligned_cols=229 Identities=15% Similarity=0.143 Sum_probs=123.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 314 NSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAH 393 (638)
Q Consensus 314 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 393 (638)
.+|..|..++.+.+++.+|++-|-+.. |+..|..+|....+.|.+++-+.++....+..-.| ..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHH
Confidence 455566666666666665555443322 44455566666666666666666655444432222 2233556666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006630 394 EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEAC 473 (638)
Q Consensus 394 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 473 (638)
++.+++.+-.+++ -.||..-...+.+-|...|.++.|.-+|..+.. |.-|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHH
Confidence 6666544332222 134444445556666666666666665554432 233344445555555554
Q ss_pred HHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006630 474 EYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 474 ~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 553 (638)
+.-++ ..+..||..+-.+|...+.+..|...--.++-. || ....++.-|-..|.++|-+.+++.-+.
T Consensus 191 daArK--------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 191 DGARK--------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp TTTTT--------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHh--------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 33211 234457777888888888777665554444322 11 122345567778888888888777652
Q ss_pred CCCCCCHHHHHHHHHHHHhhcCHHHHHH
Q 006630 554 ADVMPQPDTFAKLMRGLKKLYNRQIAAE 581 (638)
Q Consensus 554 ~~~~p~~~t~~~ll~~~~~~g~~~~A~~ 581 (638)
.. .....+|+-|.-.|.+- +.++-.+
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmE 283 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMRE 283 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHH
Confidence 11 34556677777667653 3343333
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.23 E-value=4.5 Score=30.58 Aligned_cols=63 Identities=10% Similarity=0.206 Sum_probs=43.6
Q ss_pred CHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Q 006630 189 MVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLY 251 (638)
Q Consensus 189 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~ 251 (638)
+.-+..+-++.+....+-|++.+..+.+.+|.+.+++..|.++|+.++.+..+....|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 344555666666666777888888888888888888888888888877665444445555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=84.72 E-value=0.00035 Score=69.22 Aligned_cols=173 Identities=14% Similarity=0.117 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHH
Q 006630 417 DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKAL 496 (638)
Q Consensus 417 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~l 496 (638)
|+..|..+|....+.|.+++-.+.+....+.. .+...=+.|+-+|++.++..+-.+++ ..|+..-...+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl---------~~~N~A~iq~V 150 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---------NGPNNAHIQQV 150 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTT---------SCCSSSCTHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHH---------cCCCcccHHHH
Confidence 33445555555566666666666555554432 22233445666666666654332221 13555555566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCH
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNR 576 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~ 576 (638)
.+-|...|.++.|.-+|..+. -|.-|..++.+.|+++.|++.-++ .-+..||..+-.+|...+++
T Consensus 151 GDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~Ef 215 (624)
T 3lvg_A 151 GDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEF 215 (624)
T ss_dssp HHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTT
T ss_pred HHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHH
Confidence 777777777777766655332 234455566777777777654222 34566888888888888888
Q ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhhhhHHHHHhh
Q 006630 577 QIAAEITEKVRKMAAERQITFKMYKRRGERDLKEKAKKQ 615 (638)
Q Consensus 577 ~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~~A~~~~~~ 615 (638)
..|-..--.++-..-+=+.+++.|...|-++|-..+++.
T Consensus 216 rLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 216 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp TTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 777655444443323334455777888887776665555
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.22 E-value=9.4 Score=32.05 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=27.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 006630 496 LLNSLLRAQKVEMAKDVWSCIVTK-GCELNV-------YAWTIWIHSLFSNGHVKEACSYCLDMM 552 (638)
Q Consensus 496 ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~ 552 (638)
-+..+...|.++.|+-+.+.+... +..|+. .++..+.+++...|++..|...|++.+
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 344445555555555555544332 112221 133444555566666666666665543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.98 E-value=9 Score=30.78 Aligned_cols=72 Identities=8% Similarity=0.043 Sum_probs=49.9
Q ss_pred CCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 006630 487 APQYGTLKALLNSLLRAQKV---EMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQP 560 (638)
Q Consensus 487 ~p~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 560 (638)
.|+..|--.+..++.+..+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|.++.+.+++. .|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCC
Confidence 46666666666677776654 468888888876642223455666777888889999999888888854 6654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.28 E-value=17 Score=30.43 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=31.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHh---cCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHhc
Q 006630 145 IKSLSKMRKFGAVWALMEEMRK---EKPQLITT----EVFVILMRRFASARMVKKAIEVLDEM 200 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~---~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m 200 (638)
+..+...+.|+.|.-+.+.+.. .++...++ .++..+..++...+++..|...|++.
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4556666667666655554332 22221111 24455666666777777777777664
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.16 E-value=5.8 Score=36.32 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=74.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHH
Q 006630 461 HGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNV----YAWTIWIHSLF 536 (638)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~ 536 (638)
..+.+.|.+++|++....-++.. +-|...-..++.-+|-.|+++.|.+-++...+. .|+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~aE- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAA- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHH-
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHHH-
Confidence 34566788888888888777776 456666666777888888888888888877765 3332 2333333321
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 537 SNGHVKEACSYCLDMMDADVMP-----QPDTFAKLMRGLK--KLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 537 ~~g~~~~A~~~~~~m~~~~~~p-----~~~t~~~ll~~~~--~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..=.+...-+-.| ...-...++.+.. ..|+.+.|...-..+++..|..+..+
T Consensus 79 ---------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 79 ---------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 137 (273)
T ss_dssp ---------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred ---------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCc
Confidence 1111222212122 1222334444443 45999999999999999987766543
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.54 E-value=39 Score=31.87 Aligned_cols=165 Identities=12% Similarity=0.029 Sum_probs=95.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 006630 213 GCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYV----LVQMKDAGFEPDIVVYNNLLSGY 288 (638)
Q Consensus 213 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~ 288 (638)
.++..=|.+.+++++|++++..-.. .+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga~--------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGAL--------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH--------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3445557778888888887655322 24455666555543 44455567788887777777776
Q ss_pred HHcCCHh-HHHHHHHHHHHc----C--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006630 289 AQMGKMT-DAFELLKEMRRK----G--CDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKS 361 (638)
Q Consensus 289 ~~~g~~~-~a~~~~~~~~~~----g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 361 (638)
.....-+ .=.++++.+++. | ..-|......+...|.+.|++.+|+..|-.-. .-|...+..++.-+...
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHh
Confidence 5533211 223444444432 2 22467788899999999999999988775211 11344555555444443
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 362 ---RKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMR 410 (638)
Q Consensus 362 ---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 410 (638)
|...++-- ..-..++ -|.-.++...|..+++...
T Consensus 179 ~~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 179 VDDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp TTCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred cCCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 44433211 1111222 2445677888888777654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.12 E-value=9.8 Score=30.50 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 260 VEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 260 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
-+..+-++.+...++.|++......+++|.+.+++..|.++|+-++.+ +.+...+|..+++
T Consensus 70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 345666677777778899999999999999999999999999887765 3344556766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 638 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.32 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.17 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.12 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.11 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.1 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.06 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.72 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.72 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.67 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.56 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.53 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.53 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.49 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.41 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.39 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.32 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.29 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.28 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.2 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.19 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.11 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.08 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.98 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.92 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.91 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.88 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.86 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.78 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.77 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.75 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.71 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.66 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.63 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.61 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.53 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.49 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.42 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.42 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.4 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.15 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.88 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.2 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.54 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.53 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.82 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.7e-23 Score=208.73 Aligned_cols=369 Identities=12% Similarity=0.032 Sum_probs=187.4
Q ss_pred HHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHH
Q 006630 181 MRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLV 260 (638)
Q Consensus 181 i~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 260 (638)
...+.+.|++++|++.++++.+.. +-+..++..+..+|.+.|++++|...|++..+..|.+..+|..+...|.+.|+++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccc
Confidence 334445555555555555554432 2234455555555555555555555555554444445555555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 261 EAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEME 340 (638)
Q Consensus 261 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 340 (638)
+|...+....+.. +.+...+..........+....+............
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 132 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP------------------------------- 132 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-------------------------------
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccc-------------------------------
Confidence 5555555554433 22333333333333333333333333333332211
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006630 341 RSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSN 420 (638)
Q Consensus 341 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 420 (638)
................+....+...+......... +...+..+...+...|++++|...+....+.. +.+...
T Consensus 133 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T d1w3ba_ 133 -----DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp -----TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -----ccccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHH
Confidence 12222223333334444444444444444433211 33344444444555555555555555544432 334445
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHH
Q 006630 421 YNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSL 500 (638)
Q Consensus 421 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~ 500 (638)
+..+...+...|++++|...|++....+ +.+...+..+...+...|++++|+..|+++++.. +.+..++..+...+
T Consensus 206 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~ 281 (388)
T d1w3ba_ 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC---SSCHHHHHHHHHHH
T ss_pred HHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence 5555555556666666666666555543 3444555556666666666666666666665554 23445555556666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHH
Q 006630 501 LRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIA 579 (638)
Q Consensus 501 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A 579 (638)
...|++++|.+.++.+... .+.+...+..+..++...|++++|+..|++.++. .|+ ..++..+..++...|++++|
T Consensus 282 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A 358 (388)
T d1w3ba_ 282 KEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp HHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHH
T ss_pred HHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHH
Confidence 6666666666666665554 2334555556666666666666666666665543 333 44455666666666666666
Q ss_pred HHHHHHHHHHHHhcccc
Q 006630 580 AEITEKVRKMAAERQIT 596 (638)
Q Consensus 580 ~~~~~~~~~~~p~~~~~ 596 (638)
+..++++++++|+++.+
T Consensus 359 ~~~~~~al~l~P~~~~a 375 (388)
T d1w3ba_ 359 LMHYKEAIRISPTFADA 375 (388)
T ss_dssp HHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHhCCCCHHH
Confidence 66666666666665554
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.2e-22 Score=200.89 Aligned_cols=383 Identities=13% Similarity=0.076 Sum_probs=258.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (638)
+...+.+.|++++|.+.|+++.+..|. +...+..+...+...|++++|+..|+++.+.. +.+..++..+..+|.+.|
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g 81 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPD--NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence 456678899999999999999998875 77889999999999999999999999998764 456789999999999999
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 006630 224 SVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKE 303 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 303 (638)
++++|...+.......+.+...+..........+....+........... .................+....+...+..
T Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T d1w3ba_ 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence 99999999999988778888888888888888888888777777666554 34444555566667777888888888887
Q ss_pred HHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 304 MRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383 (638)
Q Consensus 304 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 383 (638)
..... +.+...+..+...+...|++++|...+++..+.. +-+...|..+...+...|++++|+..++.....+.. +.
T Consensus 161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~ 237 (388)
T d1w3ba_ 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence 77653 3356677778888888888998888888877653 335667777778888888888888887777665332 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (638)
..+..+...+.+.|++++|...+++..+.. +.+..++..+...|...|++++|...++
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~--------------------- 295 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYN--------------------- 295 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------
Confidence 445555555555555555555555555432 2334444444444444555555555444
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHH
Q 006630 464 LGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKE 543 (638)
Q Consensus 464 ~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 543 (638)
...... +.+...+..+...+...|++++|++.|+++++.. +-+...|..+..+|...|++++
T Consensus 296 --------------~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 357 (388)
T d1w3ba_ 296 --------------TALRLC---PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp --------------HHHHHC---TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred --------------hhhccC---CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 444433 2334444444444455555555555555544431 1133445555555555555555
Q ss_pred HHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcC
Q 006630 544 ACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYN 575 (638)
Q Consensus 544 A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~ 575 (638)
|+..|+++++. .|+ ...|..+..++.+.||
T Consensus 358 A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 358 ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 55555555532 342 3445555555555443
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=3.1e-14 Score=139.06 Aligned_cols=253 Identities=11% Similarity=0.032 Sum_probs=177.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006630 318 VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE 397 (638)
Q Consensus 318 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 397 (638)
.....+.+.|++++|...|+++.+.. +-+..+|..+...|...|++++|+..|.+..+.... +...+..+...+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence 34556777888888888888877763 335677777778888888888888888877765432 5666777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006630 398 ELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFK 477 (638)
Q Consensus 398 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 477 (638)
++++|.+.++...... |+............. ..+.......+..+...+...+|...|.
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL 160 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence 7777777777776542 221110000000000 0000111112223344566788888888
Q ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006630 478 EMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM 557 (638)
Q Consensus 478 ~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 557 (638)
+....... .++..++..+...+...|++++|+..|++++.... -+...|..+..+|...|++++|++.|+++++. .
T Consensus 161 ~al~~~p~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 236 (323)
T d1fcha_ 161 AAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALEL--Q 236 (323)
T ss_dssp HHHHHSTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHhhc-ccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHH--h
Confidence 88775421 34567788888899999999999999999988632 26788999999999999999999999999875 4
Q ss_pred C-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 558 P-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 558 p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
| +...|..++.+|.+.|++++|++.++++++++|++....
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 277 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR 277 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence 5 466799999999999999999999999999999988763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=4.4e-14 Score=137.90 Aligned_cols=247 Identities=10% Similarity=0.019 Sum_probs=153.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006630 355 ISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGEL 434 (638)
Q Consensus 355 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 434 (638)
...+.+.|++++|+..|+++.+..+. +..+|..+..++...|++++|...+.+..+.. +.+...+..+...|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 33445555555555555555554322 34455555555555555555555555554432 23344445555555555555
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 006630 435 KEAVNVWNEMEAASLSPGTDSF-VVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVW 513 (638)
Q Consensus 435 ~~A~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~ 513 (638)
++|.+.++.+.... |+.... ........ ..+.......+..+...+.+.+|.+.+
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAG----------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC-------------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhh----------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 55555555554432 211000 00000000 000001111223345567788899999
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Q 006630 514 SCIVTKG-CELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAA 591 (638)
Q Consensus 514 ~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p 591 (638)
.++++.. -.++...+..+...+...|++++|+..|++.+.. .| +...|..+...+...|++++|.+.++++++++|
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence 9887762 2345778889999999999999999999998865 34 477799999999999999999999999999999
Q ss_pred hccccc----chhhhhhhhhhHHHHHhhhhhhhhhhhhhhcc
Q 006630 592 ERQITF----KMYKRRGERDLKEKAKKQVDGRKRRARQRRWG 629 (638)
Q Consensus 592 ~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 629 (638)
+++.++ .+|...|++++|.+.|++..+..++...-.+.
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 279 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence 998875 68999999999999999987776665544433
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=5.7e-10 Score=107.34 Aligned_cols=235 Identities=9% Similarity=0.053 Sum_probs=149.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 350 TYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKE-ELEECVELMGEMRKIGCVPDVSNYNVVIRLA 428 (638)
Q Consensus 350 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 428 (638)
.++.+...+.+.+.+++|+++++.+++..+. +...|+....++...| ++++|+..++.+.+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 4444555556666667777777666664332 4455555555555554 4677777777766654 45566777777777
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC---
Q 006630 429 CKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK--- 505 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~--- 505 (638)
.+.|++++|+..++++.+.+ +.+...|..+...+...|++++|++.|+++++.+ +.+...|..+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~---p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC---CccHHHHHHHHHHHHHccccch
Confidence 77777777777777777765 5567777777777777777777888777777765 3455566665555555444
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhh--cCHHHH
Q 006630 506 ---VEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVM-PQPDTFAKLMRGLKKL--YNRQIA 579 (638)
Q Consensus 506 ---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~--g~~~~A 579 (638)
+++|.+.+.++++..+ .+...|+.+...+.. ...+++.+.++...+.... .+...+..+...|... ++.+.+
T Consensus 199 ~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 5678888887777632 256677766655444 4457777777777653222 2345556666666443 455666
Q ss_pred HHHHHHHHHHHHh
Q 006630 580 AEITEKVRKMAAE 592 (638)
Q Consensus 580 ~~~~~~~~~~~p~ 592 (638)
...+++++++.+.
T Consensus 277 ~~~~~ka~~l~~~ 289 (315)
T d2h6fa1 277 EDILNKALELCEI 289 (315)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6677777666544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=2.5e-09 Score=104.53 Aligned_cols=273 Identities=10% Similarity=-0.063 Sum_probs=157.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 006630 322 ALCRMEKMEEANRAFVEMERSGCEAD----VVTYTTLISGFCKSRKIDRCYEILDSMIQRGI-LPN----QLTYLHIMLA 392 (638)
Q Consensus 322 ~~~~~g~~~~A~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~t~~~ll~~ 392 (638)
.+...|++++|++++++..+.....+ ...++.+...|...|++++|+..|++..+... .++ ..++..+...
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34444555555555555443311101 12344444455555555555555554433210 011 1223334444
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHH
Q 006630 393 HEKKEELEECVELMGEMRK----IGCVPD---VSNYNVVIRLACKLGELKEAVNVWNEMEAAS----LSPGTDSFVVMVH 461 (638)
Q Consensus 393 ~~~~g~~~~a~~~~~~~~~----~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~~~~~li~ 461 (638)
+...|++..+...+..... ...... ...+..+...+...|+++.+...+....... .......+..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 5555666666655554432 111111 1234455566777788888887777665432 1122345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 006630 462 GFLGQGCLIEACEYFKEMVGRGLLSAPQ----YGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCEL---NVYAWTIWIHS 534 (638)
Q Consensus 462 ~~~~~g~~~~A~~~~~~m~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~ 534 (638)
.+...+...++...+.+........... ...+..+...+...|++++|...+.......... ....+..+..+
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 260 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 260 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 6777788888887777655421110111 2234455666778899999998888776542221 23456667888
Q ss_pred HHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 535 LFSNGHVKEACSYCLDMMD----ADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~----~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
+...|++++|...+++++. .+..|+ ...+..+...+...|++++|.+.+++++++.+...
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~ 325 (366)
T d1hz4a_ 261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 325 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcC
Confidence 8999999999999888763 344444 34577788889999999999999999999877643
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=2.3e-10 Score=110.09 Aligned_cols=204 Identities=10% Similarity=0.105 Sum_probs=170.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLG-ELKEAVNVWNEMEAASLSPGTDSFVVMVHG 462 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~ 462 (638)
..++.+...+.+.+..++|+++++.+++.+ |-+...|+....++...| ++++|+..++...+.+ +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 455666667788899999999999999975 667788888888888876 5899999999998876 6778999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC--
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH-- 540 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-- 540 (638)
+...|++++|++.++++++.. +.+...|..+...+.+.|++++|.+.++++++.++. +...|+.+..++.+.|.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d---p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHhhccHHHHHHHHhhhhhhh---hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccc
Confidence 999999999999999999987 467889999999999999999999999999997433 67788888777776655
Q ss_pred ----HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 541 ----VKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 541 ----~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
+++|+..+.++++. .| +...|..+...+.. ...+++.+.+++++++.|+....
T Consensus 198 ~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~ 255 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSP 255 (315)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCH
T ss_pred hhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCH
Confidence 67899999988865 45 56667777666554 45688999999999999986543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.21 E-value=3.3e-09 Score=101.74 Aligned_cols=196 Identities=7% Similarity=-0.043 Sum_probs=157.1
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006630 397 EELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYF 476 (638)
Q Consensus 397 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 476 (638)
+..+++..++++..+...+.+...+...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34578888999888765566777888888999999999999999999987652223457899999999999999999999
Q ss_pred HHHHhCCCCCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 477 KEMVGRGLLSAPQYGTLKALLNS-LLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 477 ~~m~~~~~~~~p~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
++++.... .+...|...... +...|+.+.|..+|+.+++. .+.+...|...++.+...|+++.|..+|++.++..
T Consensus 158 ~~al~~~~---~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 158 KKAREDAR---TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHTSTT---CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHhCC---CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 99998763 344445444433 33468999999999999887 33467889999999999999999999999988743
Q ss_pred -CCCC--HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 556 -VMPQ--PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 556 -~~p~--~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
..|+ ...|...+..-...|+.+.+..+.+++.+..|+....
T Consensus 234 ~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~ 277 (308)
T d2onda1 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence 3443 4578888888888899999999999999999887544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=2.1e-08 Score=97.65 Aligned_cols=262 Identities=12% Similarity=0.056 Sum_probs=118.6
Q ss_pred HHhCCCHHHHHHHHHHHhccCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHH
Q 006630 219 LCKNSSVKEAAKLFDEMRERFKPS-----LRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGF-EPD----IVVYNNLLSGY 288 (638)
Q Consensus 219 ~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~ 288 (638)
+...|++++|+.++++.....|.+ ...++.+...|...|++++|...|++..+... .++ ..++..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 344455555555554443332222 12344444455555555555555554432110 001 12333444455
Q ss_pred HHcCCHhHHHHHHHHHHHc----CCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHH
Q 006630 289 AQMGKMTDAFELLKEMRRK----GCDP---NANSYTVLIQALCRMEKMEEANRAFVEMERSG----CEADVVTYTTLISG 357 (638)
Q Consensus 289 ~~~g~~~~a~~~~~~~~~~----g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~li~~ 357 (638)
...|++..+...+...... +... ....+..+...+...|+++.+...+....... .......+..+...
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 5555555555555544321 1111 11233444555666666666666666555431 11123344444555
Q ss_pred HHhcCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHH
Q 006630 358 FCKSRKIDRCYEILDSMIQR--GILPN----QLTYLHIMLAHEKKEELEECVELMGEMRKIGCV---PDVSNYNVVIRLA 428 (638)
Q Consensus 358 ~~~~g~~~~A~~~~~~m~~~--~~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~ 428 (638)
+...++..++...+.+.... ..... ...+......+...|+.+.|...+....+.... .....+..+...|
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 55666666666655544331 11111 112233334445555666665555554432111 1123334445555
Q ss_pred HHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006630 429 CKLGELKEAVNVWNEMEA----ASLSPG-TDSFVVMVHGFLGQGCLIEACEYFKEMV 480 (638)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 480 (638)
...|++++|...+++... .+..|+ ...+..+...|...|++++|.+.+++.+
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al 318 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 318 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666655432 121222 2344555555666666666666665544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=1.7e-10 Score=112.57 Aligned_cols=257 Identities=9% Similarity=-0.037 Sum_probs=179.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 326 MEKMEEANRAFVEMERSGCEAD-VVTYTTLISG----------FCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHE 394 (638)
Q Consensus 326 ~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~ 394 (638)
.+..++|++++++..+. .|+ ...|+..-.. +...|++++|+.+++...+..+. +...+..+..++.
T Consensus 42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~ 118 (334)
T d1dcea1 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS 118 (334)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHH
Confidence 33446777777777665 343 3344332222 23345577888888888876543 5666666666665
Q ss_pred hcC--CHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006630 395 KKE--ELEECVELMGEMRKIGCVPDVSNYNV-VIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIE 471 (638)
Q Consensus 395 ~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 471 (638)
..+ +++++...+..+.+.. +++...+.. ....+...+..++|+..++.+.+.+ +-+...|+.+...+...|++++
T Consensus 119 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~ 196 (334)
T d1dcea1 119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD 196 (334)
T ss_dssp TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCC
T ss_pred HhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHH
Confidence 554 4788888888887764 445555443 3456667888999999999888876 6678889989889988888887
Q ss_pred HHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 006630 472 ACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDM 551 (638)
Q Consensus 472 A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 551 (638)
|...+....... |.. ..+...+...+..+++...+....... .++...+..++..+...|+.++|+..+.+.
T Consensus 197 A~~~~~~~~~~~----~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 268 (334)
T d1dcea1 197 SGPQGRLPENVL----LKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQEL 268 (334)
T ss_dssp SSSCCSSCHHHH----HHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhH----HHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 766555444332 221 223344566677788888888887663 334556667777888889999999999887
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 552 MDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 552 ~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
... .|+ ..+|..+..++...|++++|.++++++++++|.++..+
T Consensus 269 ~~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~ 313 (334)
T d1dcea1 269 EPE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 313 (334)
T ss_dssp CTT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred Hhh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHH
Confidence 744 453 45688888899999999999999999999999877665
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=4.4e-10 Score=105.00 Aligned_cols=200 Identities=7% Similarity=-0.063 Sum_probs=101.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 385 TYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFL 464 (638)
Q Consensus 385 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~ 464 (638)
++..+...+.+.|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|+..|+++.+.+ +.+..+|..+...|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 44444555666666666666666665543 4455666666666666666666666666666654 334556666666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC----
Q 006630 465 GQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH---- 540 (638)
Q Consensus 465 ~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---- 540 (638)
..|++++|+..|+..++.. +.+......+...+.+.+..+.+..+....... .++...++ ++..+.....
T Consensus 117 ~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTL 190 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhh-HHHHHHHHHHHHHH
Confidence 6666666666666666654 233333333333334444444444443333332 11111221 1122211111
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcc
Q 006630 541 VKEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQ 594 (638)
Q Consensus 541 ~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~ 594 (638)
.+.+...+..... ..|+ ..+|..+...+...|++++|...++++++.+|++.
T Consensus 191 ~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 191 MERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 1111111111110 0121 23455666677777777777777777777777653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.11 E-value=1.9e-08 Score=96.30 Aligned_cols=186 Identities=10% Similarity=0.001 Sum_probs=92.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006630 295 TDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSM 374 (638)
Q Consensus 295 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 374 (638)
++|..+++...+...+.+...|...+..+.+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+.+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44444555444432233334444455555555555555555555544321112334555555555555555555555555
Q ss_pred HHCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC
Q 006630 375 IQRGILPNQLTYLHIML-AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAAS-LSPG 452 (638)
Q Consensus 375 ~~~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~ 452 (638)
.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...+...++.+.+.|+++.|+.+|++..... ..|+
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 544332 2222222221 223345556666666665554 24445556666666666666666666666655542 1221
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006630 453 --TDSFVVMVHGFLGQGCLIEACEYFKEMVGR 482 (638)
Q Consensus 453 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 482 (638)
...|...+..-...|+.+.+.++++++.+.
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 235555555555566666666666665543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.10 E-value=4.7e-10 Score=109.27 Aligned_cols=144 Identities=5% Similarity=-0.138 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHHHHHHH----------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-
Q 006630 224 SVKEAAKLFDEMRERFKPSLRHFTSLLYGWC----------KEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMG- 292 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~----------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g- 292 (638)
..++|+++++.+....|.+...|+..-..+. ..|++++|+.+++...+.. +-+...|..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 3456666666665555555555544333222 2233455555555555443 334444554544444443
Q ss_pred -CHhHHHHHHHHHHHcCCCCCHHhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 293 -KMTDAFELLKEMRRKGCDPNANSYT-VLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEI 370 (638)
Q Consensus 293 -~~~~a~~~~~~~~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 370 (638)
++++|...++.+.+... ++...+. .....+...+..++|+..++.+.+.. +-+...|+.+...+.+.|++++|...
T Consensus 123 ~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~ 200 (334)
T d1dcea1 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (334)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHH
Confidence 35555555555555422 1333332 23344445556666666666555443 22455555555555566555554433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.2e-09 Score=100.10 Aligned_cols=215 Identities=11% Similarity=-0.049 Sum_probs=154.0
Q ss_pred HHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006630 399 LEECVELMGEMRKIGCVP---DVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEY 475 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 475 (638)
.+.++.-++++....... ...++..+..+|.+.|++++|+..|++..+.+ +-+..+|+.+..+|...|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344555555555432111 23466677889999999999999999999876 67789999999999999999999999
Q ss_pred HHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006630 476 FKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDAD 555 (638)
Q Consensus 476 ~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 555 (638)
|+++++.. +.+..++..+..++...|++++|...|+..++... .+......+..++.+.+..+.+..+........
T Consensus 94 ~~~al~~~---p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (259)
T d1xnfa_ 94 FDSVLELD---PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169 (259)
T ss_dssp HHHHHHHC---TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred hhHHHHHH---hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence 99999976 34566788899999999999999999999988732 245444445555666666666665555555432
Q ss_pred CCCCHHHHHHHHHHH----HhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 556 VMPQPDTFAKLMRGL----KKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 556 ~~p~~~t~~~ll~~~----~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
++...+. ++..+ ...+..+.+...+.......|+...++ .+|...|++++|.+.|++.....+
T Consensus 170 --~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 170 --KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp --CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred --hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 2222222 11111 223456777777777778888776653 689999999999999999665443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.72 E-value=4.6e-08 Score=78.15 Aligned_cols=104 Identities=13% Similarity=0.026 Sum_probs=82.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhc
Q 006630 495 ALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLY 574 (638)
Q Consensus 495 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g 574 (638)
.-.+.+...|++++|+..|+++++.. +-+...|..+..+|...|++++|+..+++.++.. +.+...|..+..++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 34566778888888888888888773 3367778888888888888888888888888653 346677888888888888
Q ss_pred CHHHHHHHHHHHHHHHHhcccccchh
Q 006630 575 NRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 575 ~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
++++|+..++++++++|+++.+...+
T Consensus 86 ~~~~A~~~~~~a~~~~p~~~~~~~~l 111 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEANNPQLKEGL 111 (117)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999988888887765433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.72 E-value=2e-07 Score=82.54 Aligned_cols=107 Identities=17% Similarity=0.146 Sum_probs=84.6
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHH
Q 006630 488 PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKL 566 (638)
Q Consensus 488 p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~l 566 (638)
|+...+....+.+.+.|++++|+..|++++... +.+...|..+..+|.+.|++++|+..|+++++. .|+ ...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHHH
Confidence 666677777888888888888888888887763 236777888888888888888888888888754 564 5668888
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 567 MRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 567 l~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..++...|++++|...++++++++|++...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~ 109 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNF 109 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHH
Confidence 8888888888888888888888888876653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=2.7e-07 Score=78.20 Aligned_cols=104 Identities=13% Similarity=0.006 Sum_probs=84.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKK 572 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~ 572 (638)
....+.|.+.|++++|+..|+++++... -+...|..+..+|...|++++|+..|+++++. .| +...|..++.++..
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHH
Confidence 3445667888999999999999888743 36778888888999999999999999988865 34 45678888888999
Q ss_pred hcCHHHHHHHHHHHHHHHHhcccccchh
Q 006630 573 LYNRQIAAEITEKVRKMAAERQITFKMY 600 (638)
Q Consensus 573 ~g~~~~A~~~~~~~~~~~p~~~~~~~~y 600 (638)
.|++++|...++++++++|+++.....+
T Consensus 91 ~g~~~eA~~~~~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 91 LGKFRAALRDYETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 9999999999999999999888775443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=8.6e-08 Score=76.77 Aligned_cols=102 Identities=11% Similarity=0.113 Sum_probs=84.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 006630 494 KALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGH---VKEACSYCLDMMDADVMPQP-DTFAKLMRG 569 (638)
Q Consensus 494 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~ 569 (638)
..+++.+...+++++|++.|++.+..+ +.+..++..+..++.+.++ +++|+.++++++..+..|+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 457888889999999999999999874 3377888889999987554 45799999998865433332 368889999
Q ss_pred HHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 570 LKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 570 ~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
|.+.|++++|+++++++++++|++..+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A 108 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQA 108 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHH
Confidence 999999999999999999999998765
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.7e-06 Score=75.58 Aligned_cols=121 Identities=12% Similarity=-0.019 Sum_probs=70.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH
Q 006630 427 LACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV 506 (638)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~ 506 (638)
.+...|+++.|++.|+++. +|+..+|..+...|...|++++|++.|++.++.+ +.....|..+..++.+.|++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---hhhhhhHHHHHHHHHhhccH
Confidence 3455666666666665432 4555566666666666666666666666666654 34455566666666666666
Q ss_pred HHHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006630 507 EMAKDVWSCIVTKGC--------------ELN-VYAWTIWIHSLFSNGHVKEACSYCLDMMDA 554 (638)
Q Consensus 507 ~~A~~~~~~~~~~~~--------------~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 554 (638)
++|.+.|++.+.... .++ ..++..+..++.+.|++++|.+.++..+..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 666666666654210 000 233445555666666666666666666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=7.6e-07 Score=76.22 Aligned_cols=82 Identities=7% Similarity=0.002 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc----hh
Q 006630 526 YAWTIWIHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK----MY 600 (638)
Q Consensus 526 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~y 600 (638)
..|+.+..+|.+.|++++|+..+++.++. .| +...|..+..++...|+++.|...++++++++|+++.+.. ++
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALEL--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhc--cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 35777888999999999999999999876 45 6778999999999999999999999999999999988853 44
Q ss_pred hhhhhhhhH
Q 006630 601 KRRGERDLK 609 (638)
Q Consensus 601 ~~~g~~~~A 609 (638)
.+.+...+.
T Consensus 141 ~~~~~~~~~ 149 (170)
T d1p5qa1 141 QRIRRQLAR 149 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=4.6e-06 Score=72.74 Aligned_cols=120 Identities=17% Similarity=0.009 Sum_probs=84.5
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (638)
.+...|+++.|++.|+.+. +|+..+|..+..+|.+.|++++|++.|++..+..|.+...|..+..+|.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 4456788888888887653 567777778888888888888888888887777777788888888888888888888
Q ss_pred HHHHHHHHHCCCCCC----------------HHHHHHHHHHHHHcCCHhHHHHHHHHHHHc
Q 006630 263 KYVLVQMKDAGFEPD----------------IVVYNNLLSGYAQMGKMTDAFELLKEMRRK 307 (638)
Q Consensus 263 ~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 307 (638)
++.|++..... +.+ ..++..+..++.+.|++++|.+.++...+.
T Consensus 90 ~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88888776531 111 233444555666666666666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=2.8e-06 Score=67.35 Aligned_cols=103 Identities=13% Similarity=-0.025 Sum_probs=65.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCC
Q 006630 145 IKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSS 224 (638)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 224 (638)
...+.+.|++++|+..|++....+|. +...|..+..++...|++++|+..+....+.+ +.+...|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc--chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 45566666777777777666666554 55666666666666666666666666666554 4556666666666666666
Q ss_pred HHHHHHHHHHHhccCCCCHHHHHHHH
Q 006630 225 VKEAAKLFDEMRERFKPSLRHFTSLL 250 (638)
Q Consensus 225 ~~~A~~~~~~~~~~~~~~~~~~~~li 250 (638)
+++|+..|+...+..|.+...+..+-
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~ 112 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQ 112 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 66666666666665555555544443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=4e-06 Score=78.74 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHhchhC----CC-CCCHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLI----TTEVFVILMRRFASARMVKKAIEVLDEMPKY----GC-EPDEF 210 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~-~~~~~ 210 (638)
.|......|...+++++|...|.+......... ...+|..+..+|.+.|++++|+..++...+. |. .....
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 566777778888888888888877654311111 1245666666677777777777666654432 10 00122
Q ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHhcc---CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006630 211 VFGCLLDALCK-NSSVKEAAKLFDEMRER---FKP---SLRHFTSLLYGWCKEGKLVEAKYVLVQMKD 271 (638)
Q Consensus 211 ~~~~li~~~~~-~g~~~~A~~~~~~~~~~---~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 271 (638)
++..+...|-. .|++++|++.|++..+. ... ...++..+...|...|++++|.+.|++...
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 33344444422 35566666555544221 000 122344445555555555555555555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.49 E-value=5.9e-07 Score=84.66 Aligned_cols=193 Identities=10% Similarity=-0.047 Sum_probs=118.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCCcHHHHHHH
Q 006630 425 IRLACKLGELKEAVNVWNEMEAA----SLSP-GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLL---SAPQYGTLKAL 496 (638)
Q Consensus 425 i~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~~p~~~~~~~l 496 (638)
...|...|++++|...|.+..+. +-++ -..+|..+...|.+.|++++|++.+++..+.... ......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45677788888888888776542 1111 1257778888888888888888888876553110 01113345555
Q ss_pred HHHHHH-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-----H-HHHH
Q 006630 497 LNSLLR-AQKVEMAKDVWSCIVTK----GCEL-NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-----P-DTFA 564 (638)
Q Consensus 497 l~~~~~-~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~-~t~~ 564 (638)
...|.. .|++++|.+.++++.+. +..+ ...++..+...+...|++++|+..|+++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 656644 58888888888887653 1111 134567778888888999999998888776421111 1 1233
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc---------chhhh--hhhhhhHHHHHhhhh
Q 006630 565 KLMRGLKKLYNRQIAAEITEKVRKMAAERQITF---------KMYKR--RGERDLKEKAKKQVD 617 (638)
Q Consensus 565 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---------~~y~~--~g~~~~A~~~~~~~~ 617 (638)
..+..+...|+++.|...+++..+.+|..+..- ..|.. .+++++|.+.|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 444456677888999888888888887644331 22222 345777887776544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=4.6e-06 Score=70.34 Aligned_cols=103 Identities=4% Similarity=-0.078 Sum_probs=59.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCC
Q 006630 144 LIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNS 223 (638)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 223 (638)
....|.+.|++++|+..|++....+|. +...|..+..+|...|++++|++.|+.+++.. +.+..+|..+..+|...|
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchh--hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 344555666666666666666665554 55556666666666666666666666655543 334455666666666666
Q ss_pred CHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 224 SVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 224 ~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
++++|...|++.....|.+...+..+
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l 118 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKY 118 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 66666666666555444444444433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.39 E-value=0.00037 Score=63.67 Aligned_cols=115 Identities=14% Similarity=-0.008 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----c
Q 006630 467 GCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLR----AQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFS----N 538 (638)
Q Consensus 467 g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~ 538 (638)
.....+...+......+ +...+..+...+.. ..+...+...++...+.| +..+...+...|.. .
T Consensus 124 ~~~~~a~~~~~~~~~~~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~ 195 (265)
T d1ouva_ 124 RDFKKAVEYFTKACDLN-----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGAT 195 (265)
T ss_dssp CCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSC
T ss_pred chhHHHHHHhhhhhccc-----ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccc
Confidence 34555555555554433 22334444444443 344556666666665543 45555555555544 4
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHh
Q 006630 539 GHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKK----LYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 539 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~g~~~~A~~~~~~~~~~~p~ 592 (638)
.++++|+.+|++..+.| ++..+..|...|.. ..|.++|.++++++.+.+.+
T Consensus 196 ~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 196 KNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred cchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 57888888888877665 34455566666654 23778888888888777654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.32 E-value=1.1e-06 Score=69.27 Aligned_cols=82 Identities=9% Similarity=0.011 Sum_probs=44.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----chhhhhhhh
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF----KMYKRRGER 606 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~----~~y~~~g~~ 606 (638)
...+.+.|++++|+..|++.++. .| +...|..+..++.+.|++++|+..++++++++|+++.++ .+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 44455555555555555555543 23 344455555555555555555555555555555555543 355555555
Q ss_pred hhHHHHHhh
Q 006630 607 DLKEKAKKQ 615 (638)
Q Consensus 607 ~~A~~~~~~ 615 (638)
++|.+.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.30 E-value=1.7e-06 Score=76.36 Aligned_cols=98 Identities=11% Similarity=-0.033 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHH
Q 006630 136 HSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCL 215 (638)
Q Consensus 136 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~l 215 (638)
|+...+......|.+.|++++|+..|++....+|. ++..|..+..+|.+.|++++|+..|+..++.. +-+..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~--~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence 34445555566666666666666666666666554 55566666666666666666666666665542 2345566666
Q ss_pred HHHHHhCCCHHHHHHHHHHHh
Q 006630 216 LDALCKNSSVKEAAKLFDEMR 236 (638)
Q Consensus 216 i~~~~~~g~~~~A~~~~~~~~ 236 (638)
..+|.+.|++++|+..|++..
T Consensus 79 g~~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.29 E-value=9.2e-06 Score=67.78 Aligned_cols=119 Identities=11% Similarity=-0.070 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 454 DSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSA--PQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 454 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
..+......+.+.|++.+|+..|.+++..-.... ++... ...... ....+|..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~--------------------~~~~~~----~~~~~~~Nl 73 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL--------------------LDKKKN----IEISCNLNL 73 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHH--------------------HHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHH--------------------HHhhhh----HHHHHHhhH
Confidence 3455556667777777777777777765421100 00000 000000 123467788
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 532 IHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 532 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
..+|.+.|++++|+..++++++.. +.+...|..+..++...|+++.|...++++++++|+++.+.
T Consensus 74 a~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~ 138 (153)
T d2fbna1 74 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIR 138 (153)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 899999999999999999998753 33678899999999999999999999999999999998774
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.28 E-value=0.0014 Score=59.74 Aligned_cols=79 Identities=11% Similarity=0.092 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 006630 399 LEECVELMGEMRKIGCVPDVSNYNVVIRLACK----LGELKEAVNVWNEMEAASLSPGTDSFVVMVHGFLG----QGCLI 470 (638)
Q Consensus 399 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~ 470 (638)
...+...+..... ..+...+..|...|.. ..+...+...++...+.| +..+...+...|.. ..+++
T Consensus 126 ~~~a~~~~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~ 199 (265)
T d1ouva_ 126 FKKAVEYFTKACD---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK 199 (265)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred hHHHHHHhhhhhc---ccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence 4444444444433 2233444444444443 233444444444444432 23333334333333 33455
Q ss_pred HHHHHHHHHHhCC
Q 006630 471 EACEYFKEMVGRG 483 (638)
Q Consensus 471 ~A~~~~~~m~~~~ 483 (638)
+|+.+|.+..+.|
T Consensus 200 ~A~~~~~~aa~~g 212 (265)
T d1ouva_ 200 EALARYSKACELE 212 (265)
T ss_dssp HHHHHHHHHHHTT
T ss_pred hhhhhHhhhhccc
Confidence 5555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=5.3e-06 Score=66.91 Aligned_cols=88 Identities=8% Similarity=-0.030 Sum_probs=64.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc----------
Q 006630 528 WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF---------- 597 (638)
Q Consensus 528 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---------- 597 (638)
+..+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|+++.|...++++++++|+++..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456677778888888888888877652 23466677788888888888888888888888888877653
Q ss_pred -chhhhhhhhhhHHHHHhhh
Q 006630 598 -KMYKRRGERDLKEKAKKQV 616 (638)
Q Consensus 598 -~~y~~~g~~~~A~~~~~~~ 616 (638)
+++...|++++|.+.|++.
T Consensus 86 g~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 3566667777777777763
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.19 E-value=7e-06 Score=69.93 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccc
Q 006630 524 NVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITFK 598 (638)
Q Consensus 524 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 598 (638)
....|..+..++.+.|++++|+..++++++.. +.+...|..+..++...|+++.|++.++++++++|+++.+..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~ 149 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA 149 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34567788899999999999999999999753 335678999999999999999999999999999999887643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.19 E-value=1.5e-05 Score=67.71 Aligned_cols=70 Identities=11% Similarity=0.046 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.|+.+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|+++.|+..++++++++|+++.+.
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~ 135 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAAR 135 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 46667788889999999999999988752 34567788888899999999999999999999999988775
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.11 E-value=1.5e-05 Score=62.39 Aligned_cols=85 Identities=12% Similarity=-0.022 Sum_probs=40.4
Q ss_pred HHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Q 006630 183 RFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEA 262 (638)
Q Consensus 183 ~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 262 (638)
.+.+.|++++|+..|++.++.. +-+..+|..+..++.+.|++++|+..|++..+..|.+..+|..+...|...|++++|
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A 103 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 103 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHH
Confidence 3444455555555555444432 223444444444454555555555555444444444444444455555555555555
Q ss_pred HHHHHH
Q 006630 263 KYVLVQ 268 (638)
Q Consensus 263 ~~~~~~ 268 (638)
.+.|++
T Consensus 104 ~~~l~~ 109 (112)
T d1hxia_ 104 LASLRA 109 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=9.8e-06 Score=64.36 Aligned_cols=92 Identities=11% Similarity=0.089 Sum_probs=44.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQK---VEMAKDVWSCIVTKGCELN-VYAWTIWIHS 534 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~li~~ 534 (638)
+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+|++++..+..|+ ..+|..+..+
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3444444555555555555555544 2444455555555544332 2345555555554322222 1244455555
Q ss_pred HHccCCHHHHHHHHHHHHh
Q 006630 535 LFSNGHVKEACSYCLDMMD 553 (638)
Q Consensus 535 ~~~~g~~~~A~~~~~~m~~ 553 (638)
|.+.|++++|++.|+++++
T Consensus 82 y~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 5555555555555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0048 Score=57.56 Aligned_cols=136 Identities=14% Similarity=0.049 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 207 PDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286 (638)
Q Consensus 207 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 286 (638)
||..-...+.+.|-+.|.++.|..+|..+.. |..++..|.+.++++.|.+++.+. -+..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 4444445556666677777777777766553 566667777777777777766543 25567777777
Q ss_pred HHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006630 287 GYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSR 362 (638)
Q Consensus 287 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 362 (638)
.|.+......+. +.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+
T Consensus 78 ~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 78 ACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred HHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence 777665554331 2222233344555667777777777777777777665332 446666777777777653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=0.00015 Score=61.33 Aligned_cols=127 Identities=7% Similarity=-0.108 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL 219 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~ 219 (638)
.+......+.+.|++++|+..|.+.....+...... . ... .....+ -..+|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~------------~--~~~-~~~~~~-------~~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS------------N--EEA-QKAQAL-------RLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC------------S--HHH-HHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc------------h--HHH-hhhchh-------HHHHHHHHHHHH
Confidence 344556778888999999999988876644321100 0 000 000000 013566677778
Q ss_pred HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006630 220 CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYA 289 (638)
Q Consensus 220 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 289 (638)
.+.|++++|+..++......|.++.+|..+..+|...|++++|...|++..+.. +-+......+-....
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ 141 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 888888888888888777667788888888888888888888888888887764 224444444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.92 E-value=8.5e-05 Score=59.47 Aligned_cols=56 Identities=2% Similarity=-0.016 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006630 459 MVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIV 517 (638)
Q Consensus 459 li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 517 (638)
+...+...|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|++.+++++
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD---PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3334444444444444444444433 2333444444444444444444444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.91 E-value=0.0091 Score=55.61 Aligned_cols=132 Identities=12% Similarity=0.093 Sum_probs=82.2
Q ss_pred HHHHHHHHhccCchhHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 006630 106 LTERVINRCGDAGNLGYRYYMWASKQPNYVHSYDVYRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFA 185 (638)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~ 185 (638)
-...+...|-+.|....+...+.... -|..++..|.+.++++.|.+++.+. + +..+|..+...|.
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~--------d~~rl~~~~v~l~~~~~avd~~~k~---~----~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS--------NFGRLASTLVHLGEYQAAVDGARKA---N----STRTWKEVCFACV 80 (336)
T ss_dssp -------------CTTTHHHHHHHTT--------CHHHHHHHHHTTTCHHHHHHHHHHH---T----CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC--------CHHHHHHHHHhhccHHHHHHHHHHc---C----CHHHHHHHHHHHH
Confidence 34556677777776655555444321 2567778888888888888777644 2 5678888888888
Q ss_pred hcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcC
Q 006630 186 SARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEG 257 (638)
Q Consensus 186 ~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g 257 (638)
+......|. +...+...+......++..|-..|.+++...+++......+.+...++.++..|++.+
T Consensus 81 ~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 777665542 2222334556666778888888888888888888776555667788888888888764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.88 E-value=3.4e-06 Score=85.82 Aligned_cols=227 Identities=7% Similarity=-0.066 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006630 296 DAFELLKEMRRKGCDPN-ANSYTVLIQALCRMEKMEEANRAFVEMERSGCEADV-VTYTTLISGFCKSRKIDRCYEILDS 373 (638)
Q Consensus 296 ~a~~~~~~~~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 373 (638)
+|.+.|++..+. .|| ...+..+..+|...|++++| |+++... .|+. ..++.. ...-...+..+++.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e--~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE--QDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH--HHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH--HHHHHHHHHHHHHHHHH
Confidence 577888877764 333 34566677778877888776 6666544 2221 111111 11111224556667776
Q ss_pred HHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006630 374 MIQRGILPNQLTYLHIMLAH--EKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSP 451 (638)
Q Consensus 374 m~~~~~~p~~~t~~~ll~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 451 (638)
..+....++..-....+..+ ...+.++.++..+....+.. +++...+..+...+.+.|+.++|...+....... |
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~ 151 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C 151 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H
Confidence 66554333332222222111 22333444444433333222 3345556666777778888888887776655422 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006630 452 GTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIW 531 (638)
Q Consensus 452 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 531 (638)
..++..+...+...|++++|+..|++..+.. |.+..+|+.+...+...|+..+|...|.+.+... .|-..++..|
T Consensus 152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~---P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL 226 (497)
T d1ya0a1 152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLV---PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNL 226 (497)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHH
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 2466777788888888888888888888776 3556678888888888888888888888887653 4567777777
Q ss_pred HHHHHccC
Q 006630 532 IHSLFSNG 539 (638)
Q Consensus 532 i~~~~~~g 539 (638)
...+.+..
T Consensus 227 ~~~~~~~~ 234 (497)
T d1ya0a1 227 QKALSKAL 234 (497)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 76665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.86 E-value=0.00065 Score=57.08 Aligned_cols=99 Identities=12% Similarity=0.019 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMDADVMPQ-PDTFAKLMRGL 570 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~ 570 (638)
.|..+..+|.+.|++++|+..++.+++.. +.+..+|..+..+|...|++++|+..|+++++. .|+ ......+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 45556777889999999999999999874 347888889999999999999999999999875 555 44444444443
Q ss_pred HhhcCH-HHHHHHHHHHHHHHHhc
Q 006630 571 KKLYNR-QIAAEITEKVRKMAAER 593 (638)
Q Consensus 571 ~~~g~~-~~A~~~~~~~~~~~p~~ 593 (638)
...+.. +...+.+.++++.-++.
T Consensus 143 ~~~~~~~e~~kk~~~~~f~~~~~~ 166 (168)
T d1kt1a1 143 KKAKEHNERDRRTYANMFKKFAEQ 166 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhc
Confidence 444333 45567777777666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=7.2e-06 Score=83.35 Aligned_cols=224 Identities=9% Similarity=-0.006 Sum_probs=83.5
Q ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHcCCHhHHHHHHHHHH
Q 006630 227 EAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIV-VYNNLLSGYAQMGKMTDAFELLKEMR 305 (638)
Q Consensus 227 ~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 305 (638)
+|.+.|++.....+....++..+..+|...|++++| |++++.. .|+.. .++.. ..+.+ ..+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e-~~Lw~-~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVE-QDLWN-HAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHH-HHHHH-HHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHH-HHHHH-HHHHHHHHHHHHhc
Confidence 566777776543334455666677777777777665 5555533 22111 11110 00111 11234444555444
Q ss_pred HcCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006630 306 RKGCDPNANSYTVLIQ--ALCRMEKMEEANRAFVEMERSGCEADVVTYTTLISGFCKSRKIDRCYEILDSMIQRGILPNQ 383 (638)
Q Consensus 306 ~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 383 (638)
+....++..-...... .+...+.++.|+..+....+.. .++...+..+...+.+.|+.++|...+....... ..
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~ 152 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ 152 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence 4332222221111111 1112233333333333222211 1233444445555555555555555544433211 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006630 384 LTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEAVNVWNEMEAASLSPGTDSFVVMVHGF 463 (638)
Q Consensus 384 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~ 463 (638)
.++..+...+...+++++|...|.+..+.. +.+...|+.|...|...|+..+|...|.+..... +|-..++..|...|
T Consensus 153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~ 230 (497)
T d1ya0a1 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 334444444555555555555555554432 3334445555555555555555555555554443 34444444444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.78 E-value=1.6e-05 Score=72.75 Aligned_cols=129 Identities=10% Similarity=-0.011 Sum_probs=87.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCH
Q 006630 463 FLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGCELN-VYAWTIWIHSLFSNGHV 541 (638)
Q Consensus 463 ~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~ 541 (638)
..+.|++++|+..+++.++.. |.+...+..+...++..|++++|...|+...+. .|+ ...+..+...+...+..
T Consensus 6 aL~~G~l~eAl~~l~~al~~~---P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~ 80 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS---PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQAR 80 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC---TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcccc
Confidence 345688888888888888877 466778888888888888888888888888876 343 44455555555444444
Q ss_pred HHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 542 KEACSYCLDMMDADVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 542 ~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
+++..-.......+ .|+ ...+......+...|+.++|.+.++++.+..|+.+..+
T Consensus 81 ~~a~~~~~~~~~~~-~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 81 KDFAQGAATAKVLG-ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHHTTSCCCEECCC-SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHHhhhhhccc-CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 44332211111111 233 23344555667788999999999999999999988764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.77 E-value=3.7e-05 Score=63.18 Aligned_cols=72 Identities=8% Similarity=0.057 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHHHHhcccccchhhhhhhhh
Q 006630 540 HVKEACSYCLDMMDADVMP-QPDTFAKLMRGLKKLY-----------NRQIAAEITEKVRKMAAERQITFKMYKRRGERD 607 (638)
Q Consensus 540 ~~~~A~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~y~~~g~~~ 607 (638)
.+++|+..|+++++. .| +..+|..+..+|...| +++.|.+.++++++++|+++... ...+...
T Consensus 56 ~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~---~~L~~~~ 130 (145)
T d1zu2a1 56 MIQEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL---KSLEMTA 130 (145)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHH---HHHHHHH
Confidence 345666666666653 34 3455666666665543 46889999999999999887653 2233334
Q ss_pred hHHHHHhhh
Q 006630 608 LKEKAKKQV 616 (638)
Q Consensus 608 ~A~~~~~~~ 616 (638)
+|.+++.++
T Consensus 131 ka~~~~~e~ 139 (145)
T d1zu2a1 131 KAPQLHAEA 139 (145)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.75 E-value=0.00034 Score=58.03 Aligned_cols=101 Identities=14% Similarity=-0.014 Sum_probs=72.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCC----------HHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCC-
Q 006630 497 LNSLLRAQKVEMAKDVWSCIVTKG-CELN----------VYAWTIWIHSLFSNGHVKEACSYCLDMMDA-----DVMPQ- 559 (638)
Q Consensus 497 l~~~~~~g~~~~A~~~~~~~~~~~-~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~- 559 (638)
.......|++++|+..|++.++.. -.|+ ...|+.+..+|...|++++|+..+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 344556677777777777766541 1111 356778888899999999999888887642 22232
Q ss_pred ----HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 560 ----PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 560 ----~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
...+..+..+|...|++++|...+++++++.|+.....
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~ 137 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 137 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchH
Confidence 22467788999999999999999999999999877653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.71 E-value=0.00067 Score=55.95 Aligned_cols=122 Identities=12% Similarity=-0.066 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHH
Q 006630 140 VYRALIKSLSKMRKFGAVWALMEEMRKEKPQLI---TTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLL 216 (638)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li 216 (638)
.+......+.+.|++.+|+..|.+....-+... +...... .. .....+|+.+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~--------------------~~----~~~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK--------------------KK----NIEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHH--------------------HH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHh--------------------hh----hHHHHHHhhHH
Confidence 344556677888999999999988776432211 1110000 00 01124677788
Q ss_pred HHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006630 217 DALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLS 286 (638)
Q Consensus 217 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 286 (638)
.+|.+.|++++|+..++...+..|.++.+|..+..+|...|++++|+..|++..+.. +-|..+...+-.
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~ 143 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred HHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 888889999999999988887778888899999999999999999999999888764 224444444433
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.66 E-value=5.8e-05 Score=61.96 Aligned_cols=126 Identities=15% Similarity=0.103 Sum_probs=71.6
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 006630 148 LSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCKNSSVKE 227 (638)
Q Consensus 148 ~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~ 227 (638)
|-+.+.|++|+..|+.....+|. +..++..+..++...+++..+.+ ..+.+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~--~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPL--DADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCc--chHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHH
Confidence 34555677777777777777765 66666666666654433322211 1123455
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhH
Q 006630 228 AAKLFDEMRERFKPSLRHFTSLLYGWCKEG-----------KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTD 296 (638)
Q Consensus 228 A~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 296 (638)
|+..|++..+..|.+..+|..+..+|...| .+++|.+.|++..+. .|+...|...+..+ ..
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~k 131 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AK 131 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HT
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HH
Confidence 666666666555666666666666665543 246666777776655 45555544443333 34
Q ss_pred HHHHHHHHHHcC
Q 006630 297 AFELLKEMRRKG 308 (638)
Q Consensus 297 a~~~~~~~~~~g 308 (638)
|.+++.+..+.|
T Consensus 132 a~~~~~e~~k~~ 143 (145)
T d1zu2a1 132 APQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHHHHHHh
Confidence 556666665554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.63 E-value=0.00037 Score=58.72 Aligned_cols=64 Identities=14% Similarity=-0.050 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 209 EFVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 209 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
...+..+..+|.+.|++++|+..++...+..|.+..+|..+..+|...|++++|++.|++..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3455556666667777777777777766666666677777777777777777777777766665
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.61 E-value=0.00045 Score=58.66 Aligned_cols=124 Identities=8% Similarity=0.030 Sum_probs=78.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHHHh
Q 006630 142 RALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDALCK 221 (638)
Q Consensus 142 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 221 (638)
......+...|++++|.+.|.+.....+..+-. .+.. +. -+...-..+. ......+..+...+.+
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~--------~~~~-~~--w~~~~r~~l~----~~~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLD--------DLRD-FQ--FVEPFATALV----EDKVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--------GGTT-ST--THHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc--------cCcc-hH--HHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 334456777788888888888877764432110 0000 00 0001111111 1123456677788888
Q ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 006630 222 NSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKD-----AGFEPDIVV 280 (638)
Q Consensus 222 ~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~ 280 (638)
.|++++|+..++.+....|.+...|..++.+|.+.|+..+|++.|+++.. .|+.|...+
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 88888888888888777777888888888888888888888888887643 577777654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.60 E-value=0.00025 Score=58.88 Aligned_cols=96 Identities=19% Similarity=0.120 Sum_probs=75.9
Q ss_pred HHHHHH--HHHHHccCCHHHHHHHHHHHHhC-CCCCC----------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Q 006630 526 YAWTIW--IHSLFSNGHVKEACSYCLDMMDA-DVMPQ----------PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAE 592 (638)
Q Consensus 526 ~~~~~l--i~~~~~~g~~~~A~~~~~~m~~~-~~~p~----------~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~ 592 (638)
.+|..+ ...+.+.|++++|+..|++.++. .-.|+ ...|..+..+|.+.|+++.|...+++++++.|+
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 45667889999999999999862 11232 356889999999999999999999999999887
Q ss_pred cccc-----------c----chhhhhhhhhhHHHHHhhhhhhhh
Q 006630 593 RQIT-----------F----KMYKRRGERDLKEKAKKQVDGRKR 621 (638)
Q Consensus 593 ~~~~-----------~----~~y~~~g~~~~A~~~~~~~~~~~~ 621 (638)
.... + .+|...|++++|.+.|++..+..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 5442 1 588999999999999999666544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.53 E-value=0.00091 Score=56.65 Aligned_cols=70 Identities=10% Similarity=0.116 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh-----CCCCCCHHH
Q 006630 492 TLKALLNSLLRAQKVEMAKDVWSCIVTKGCELNVYAWTIWIHSLFSNGHVKEACSYCLDMMD-----ADVMPQPDT 562 (638)
Q Consensus 492 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t 562 (638)
.+..+..++...|++++|...++.++... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45667778888899999999988888863 33677888888999999999999888888633 588888765
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00023 Score=53.34 Aligned_cols=71 Identities=8% Similarity=-0.048 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhccccc
Q 006630 527 AWTIWIHSLFSNGHVKEACSYCLDMMDA-----DVMPQ-PDTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQITF 597 (638)
Q Consensus 527 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 597 (638)
.+-.++..+.+.|++++|+..|++.++. ...++ ..++..+..++.+.|++++|+..++++++++|+++.++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 3445677788888888888888877642 11222 45688899999999999999999999999999988764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.42 E-value=0.00013 Score=66.48 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=36.2
Q ss_pred hCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006630 221 KNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDA 272 (638)
Q Consensus 221 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 272 (638)
+.|++++|+..+++..+..|.|...+..+...|+..|++++|...|+...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4567777777777766666667777777777777777777777777776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.016 Score=44.32 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC-CH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccc
Q 006630 522 ELNVYAWTIWIHSLFSNG---HVKEACSYCLDMMDADVMP-QP-DTFAKLMRGLKKLYNRQIAAEITEKVRKMAAERQIT 596 (638)
Q Consensus 522 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~p-~~-~t~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 596 (638)
.|...+.=...+++.+.. +.++++.++++..+. .| +. ..+..|.-+|.+.|++++|+.+++++++.+|++..+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 455666656677777654 457899999998864 34 33 456778888999999999999999999999987664
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.0098 Score=43.87 Aligned_cols=40 Identities=20% Similarity=0.114 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCCHHHHHHH
Q 006630 210 FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPSLRHFTSL 249 (638)
Q Consensus 210 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 249 (638)
.+++.|..+|.+.|++++|+..++++.+..|.+..+++.+
T Consensus 47 ~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 47 SVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3445555555555555555555555554444445444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.15 E-value=0.4 Score=37.19 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=7.5
Q ss_pred CHHHHHHHHHHHHhCC
Q 006630 468 CLIEACEYFKEMVGRG 483 (638)
Q Consensus 468 ~~~~A~~~~~~m~~~~ 483 (638)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4444444444444444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.05 E-value=0.34 Score=37.61 Aligned_cols=15 Identities=20% Similarity=0.098 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHCC
Q 006630 259 LVEAKYVLVQMKDAG 273 (638)
Q Consensus 259 ~~~A~~~~~~m~~~g 273 (638)
+++|.++|.+..+.|
T Consensus 9 ~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 9 LKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 444555555544444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.88 E-value=0.52 Score=35.38 Aligned_cols=64 Identities=19% Similarity=0.062 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 006630 455 SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAKDVWSCIVTKGC 521 (638)
Q Consensus 455 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 521 (638)
....-++.+..+|+-++-.++++++.+.+ .|++..+..+.++|.+.|...++-+++.++-+.|.
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~---~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34444555566666666666666655544 35555566666666666666666666666655543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.20 E-value=0.77 Score=34.44 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcC
Q 006630 246 FTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKG 308 (638)
Q Consensus 246 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g 308 (638)
.+..++...++|+-+.-.++++++.+.+ +|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3444444455555555555555444433 4444444455555555555555555555544444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.54 E-value=4.6 Score=38.43 Aligned_cols=336 Identities=10% Similarity=-0.009 Sum_probs=176.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHhchhCCCCCCHHHHHHHHHHH-
Q 006630 141 YRALIKSLSKMRKFGAVWALMEEMRKEKPQLITTEVFVILMRRFASARMVKKAIEVLDEMPKYGCEPDEFVFGCLLDAL- 219 (638)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~- 219 (638)
-...+..+.+.+++...+..+. ..| .+...-.....+....|+...|...+..+-..| ...+..+..+...+
T Consensus 75 r~~~l~~L~~~~~w~~~~~~~~----~~p--~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~ 147 (450)
T d1qsaa1 75 QSRFVNELARREDWRGLLAFSP----EKP--GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWR 147 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC----SCC--SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHhcc----CCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344555666666655433321 112 244444455556666666666666665554443 12222333333333
Q ss_pred -----------------HhCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006630 220 -----------------CKNSSVKEAAKLFDEMRERFKPSLRHFTSLLYGWCKEGKLVEAKYVLVQMKDAGFEPDIVVYN 282 (638)
Q Consensus 220 -----------------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 282 (638)
...|+...|..+...+... ........+........+ .... ... .++.....
T Consensus 148 ~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~---~~~~~~a~~~l~~~p~~~---~~~~---~~~--~~~~~~~~ 216 (450)
T d1qsaa1 148 ASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD---YQTIASAIISLANNPNTV---LTFA---RTT--GATDFTRQ 216 (450)
T ss_dssp HTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG---GHHHHHHHHHHHHCGGGH---HHHH---HHS--CCCHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh---HHHHHHHHHHHHhChHhH---HHHH---hcC--CCChhhhH
Confidence 3344444444444333221 222333333333222222 1111 111 23333333
Q ss_pred HHHHHHHH--cCCHhHHHHHHHHHHHcCCCCCHHhHHH----HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006630 283 NLLSGYAQ--MGKMTDAFELLKEMRRKGCDPNANSYTV----LIQALCRMEKMEEANRAFVEMERSGCEADVVTYTTLIS 356 (638)
Q Consensus 283 ~ll~~~~~--~g~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 356 (638)
.+..++.+ ..+.+.+..++......... +..-+.. +.......+..+.+...+......+ .+.......+.
T Consensus 217 ~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~ 293 (450)
T d1qsaa1 217 MAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVR 293 (450)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred HHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHH
Confidence 33344433 24777888888777654322 2222222 2222334566777888887776653 34444444555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006630 357 GFCKSRKIDRCYEILDSMIQRGILPNQLTYLHIMLAHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKE 436 (638)
Q Consensus 357 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 436 (638)
.....+++..+...+..|... ........--+..++...|+.+.|..+|..+.. .++ -|..|.. .+.|..-.
T Consensus 294 ~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~ 365 (450)
T d1qsaa1 294 MALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--QRIGEEYE 365 (450)
T ss_dssp HHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--HHTTCCCC
T ss_pred HHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--HHcCCCCC
Confidence 566778999998888887543 222345556677888899999999999988874 233 2333221 12232100
Q ss_pred HHHHHHHHHHCCC--CCCH-H---HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 006630 437 AVNVWNEMEAASL--SPGT-D---SFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKVEMAK 510 (638)
Q Consensus 437 A~~~~~~m~~~~~--~p~~-~---~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~~~A~ 510 (638)
+..... .+.. . .-..-+..+...|...+|...+..+.... +......+.....+.|.++.|+
T Consensus 366 -------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~-----~~~~~~~la~lA~~~g~~~~aI 433 (450)
T d1qsaa1 366 -------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK-----SKTEQAQLARYAFNNQWWDLSV 433 (450)
T ss_dssp -------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC-----CHHHHHHHHHHHHHCCChhHHH
Confidence 000000 0010 0 11133566778899999999998887542 2334556677788999999999
Q ss_pred HHHHHHH
Q 006630 511 DVWSCIV 517 (638)
Q Consensus 511 ~~~~~~~ 517 (638)
.......
T Consensus 434 ~a~~~~~ 440 (450)
T d1qsaa1 434 QATIAGK 440 (450)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8877663
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.53 E-value=6 Score=37.57 Aligned_cols=203 Identities=11% Similarity=0.035 Sum_probs=111.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006630 362 RKIDRCYEILDSMIQRGILPNQLTYLHIML----AHEKKEELEECVELMGEMRKIGCVPDVSNYNVVIRLACKLGELKEA 437 (638)
Q Consensus 362 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 437 (638)
.+.+.|..++......... +......+-. .....+..+.+..++......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 5677788777777654322 2222222222 2233455666777666665543 3444455556666677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHH
Q 006630 438 VNVWNEMEAASLSPGTDSFVVMVHGFLGQGCLIEACEYFKEMVGRGLLSAPQYGTLKALLNSLLRAQKV-EMAKDVWSCI 516 (638)
Q Consensus 438 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~A~~~~~~~ 516 (638)
...++.|.... .....-.--+..++...|+.++|...|..+... ++.. ..+.+ .+.|.. .-..
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-----~~fY---G~LAa-~~Lg~~~~~~~------ 368 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----RGFY---PMVAA-QRIGEEYELKI------ 368 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSHH---HHHHH-HHTTCCCCCCC------
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-----CChH---HHHHH-HHcCCCCCCCc------
Confidence 88887775432 122333345667778888888888888877532 3332 22221 122211 0000
Q ss_pred HHcCCCCCH-HH---HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 006630 517 VTKGCELNV-YA---WTIWIHSLFSNGHVKEACSYCLDMMDADVMPQPDTFAKLMRGLKKLYNRQIAAEITEKV 586 (638)
Q Consensus 517 ~~~~~~p~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~A~~~~~~~ 586 (638)
......+.. .. -..-+..+...|+..+|...+..+... .+......+.....+.|.++.|+....++
T Consensus 369 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence 000000000 00 012245677888888888888777643 24555666677777888888888776654
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.61 E-value=2.3 Score=31.96 Aligned_cols=51 Identities=16% Similarity=0.136 Sum_probs=22.2
Q ss_pred HHHHHHHHhchhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHhccCCCC
Q 006630 191 KKAIEVLDEMPKYGCEPDE-FVFGCLLDALCKNSSVKEAAKLFDEMRERFKPS 242 (638)
Q Consensus 191 ~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 242 (638)
++|+.+|+.+.+.+ +.+. ..+..|.-+|.+.|++++|.+.++.+.+..|.+
T Consensus 55 ~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 55 RLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCc
Confidence 44555555444332 1121 233344444445555555555555544433333
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.82 E-value=4.7 Score=28.48 Aligned_cols=63 Identities=16% Similarity=0.298 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 006630 258 KLVEAKYVLVQMKDAGFEPDIVVYNNLLSGYAQMGKMTDAFELLKEMRRKGCDPNANSYTVLIQ 321 (638)
Q Consensus 258 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (638)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+ +.++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence 34456666677777777888888888888888888888888888877654 2334445555543
|