Citrus Sinensis ID: 006634

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------
Protein Sequence
MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHHHccccccEEccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccEEEcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHccccccccccccccccccccccccEEEEccccccHHHHHHHHHcccEEEEEEEEEcHHHHHHHHHHHccccccccEEEEccHHcccHHHHHHHHHHcccccEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHccHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccEEEEEcEEEcccccHHHHHHHHHcccccEEcHHHHHHHHHHcccEccccccccccccccccccHHHHccccccccccccccHcccEEEccHHHHHHHHHHHHHHHHcccccccccccccEHHHcccccEEEEcccccccccHHHHHHHHcccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHccccEEEEEEEEEcHHHHHHHHHHHHHcccccEEEEEccHHHccHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNAlqesnsqssdsldtlfgdkdansppeistmvqpkeepnvmdeglHIEKRASLLMMNFSVNEVDFALdklgkdapvyELVDFITAAQISenfeketddaphdndgtnedksdetlYGTMEITLQLLEMGFSENQVSLAIEKfgsktpiseLADKIFsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssweekvkpnssrygmqqafnsnpcrsinkvvaqppyffygNVVDVSIDCWVKMSHFLyslepefvnsQYFSALSrregylhnlpttnrfhippeppmtiqdaiphtkkwwpswdtrkhlscinsgtsGISQLCERFEKLLRDsrgvlssqqQRDILHRSEKLNLVWvgayklgpvdpeHIELIlgypsnhtqaAGNSLTARLESLRHCFQTDTLGYHLSVLksmfpggltMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWessgqtgelvqIEDIQALTTKKFESLIHKLgsidfvicqnsvpqipnskqisnskdpkmaaesdnlpdfdfsLYYEFVRVVQRVRSMKR
Flexible Loop (DISEMBL)
MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALqesnsqssdSLDTLFGDKdansppeistmvqpkeepnVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENfeketddaphdndgtnedksdetLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIfsgqifldtprsrsydtvkvkteycspdvvsqsrkmntsetsrgkrpkeeyfddfsnstsqfqhvdfqenrkgkrpkqeslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSrgvlssqqqrdilhrseklnlVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKgvisietsetnrRILKRwwessgqtgelvqIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Low Complexity Region (SEG)
MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEslddsssfldssWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered region (IsUnstruct)
******************NVDLLLETLIEYNA********************************************HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI**************************LYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYC****************************************************************************************CRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDS**V*******DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS**************************DFDFSLYYEFVRVVQR******
Disordered Region (DISOPRED)
*GFS*SLVDKVIEEKGQDNVDLLLETLI**********************K*****************************RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISEN********************************QLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDT***R******************************************************************************************G*****************AQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCER****************QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQI*************NLPDFDFSLYYEFVRVVQRVRSM**
Disordered Region (DISEMBL)
MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQE********LDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPD*******************KEEYFDDFSNSTSQFQHVDF**********************************RYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR********RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNS************AESDNLPDFDFSLYYEFVRVVQRVRSMKR
Disordered Region (DISPRO)
*GFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQ****************************************GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISEN*****************DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEY***********************KE******SNSTSQFQH***********************LDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS*DPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	637	2.2.26 [Sep-21-2011]
Q9M548	626	DNA (cytosine-5)-methyltr	no	no	0.511	0.520	0.430	2e-79
Q9LXE5	624	DNA (cytosine-5)-methyltr	no	no	0.861	0.879	0.310	3e-76

>sp|Q9M548|DRM2_ARATH DNA (cytosine-5)-methyltransferase DRM2 OS=Arabidopsis thaliana GN=DRM2 PE=1 SV=1

 Score =  297 bits (760), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 146/339 (43%), Positives = 205/339 (60%), Gaps = 13/339 (3%)

Query: 301 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 360
           RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct: 297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query: 361 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSR 420
             NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L    
Sbjct: 357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query: 421 GVLSSQQ--QRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 478
                 +  QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct: 416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query: 479 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 538
           +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct: 476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query: 539 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 598
            NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct: 536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query: 599 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 637
           +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct: 596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|Q9LXE5|DRM1_ARATH DNA (cytosine-5)-methyltransferase DRM1 OS=Arabidopsis thaliana GN=DRM1 PE=4 SV=2

 Score =  286 bits (733), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 199/640 (31%), Positives = 316/640 (49%), Gaps = 91/640 (14%)

Query: 1   MGFSPSLVDKVIEEKGQDNVD--LLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPE 58
           MGFS  ++ + IEE    N++  ++LETL  Y+A  E++S  S  ++       A   PE
Sbjct: 69  MGFSTQMIARAIEETAGANMEPMMILETLFNYSASTEASSSKSKVINHFI----AMGFPE 124

Query: 59  ISTMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ 118
              +++  +E    D G   E   +LL    +  EVD    KL +   +   ++      
Sbjct: 125 -EHVIKAMQEHGDEDVG---EITNALL----TYAEVD----KLRESEDMNININDDDDDN 172

Query: 119 ISENFEKETDDAPHD-NDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKT 177
           +   +   +DD   + N+ +NED+          I   L++MG+     ++AIE+ G   
Sbjct: 173 L---YSLSSDDEEDELNNSSNEDR----------ILQALIKMGYLREDAAIAIERCGEDA 219

Query: 178 PISELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEY 237
            + E+ D I + Q+      +R +D +     Y  PD   +   MN ++  R        
Sbjct: 220 SMEEVVDFICAAQM------ARQFDEI-----YAEPD---KKELMNNNKKRR-------- 257

Query: 238 FDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNS 297
                          + E      P++ + D   S         V PN     M +    
Sbjct: 258 --------------TYTET-----PRKPNTDQLISLPKEMIGFGV-PNHPGLMMHRPV-- 295

Query: 298 NPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLH 357
                I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+ GY+H
Sbjct: 296 ----PIPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIH 351

Query: 358 NLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR 417
           NLP  NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L 
Sbjct: 352 NLPIQNRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALE 410

Query: 418 DSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTAR 477
              G      Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R
Sbjct: 411 RYDGETPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDR 470

Query: 478 LESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 537
            +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S
Sbjct: 471 YKSLGNSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEIS 530

Query: 538 ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSK 597
           + NR IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +     P + 
Sbjct: 531 DANRNILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNN 585

Query: 598 QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 637
               ++  ++    ++      SL++++ R+++ VR   R
Sbjct: 586 LAGGNRHHRVGLGGEH-----SSLFFDYCRILEAVRRKAR 620

Involved in de novo DNA methylation. Controls asymmetric and CpNpG methylation. Required for FWA gene silencing but not for the maintenance of SUP gene silencing. Functionally redundant to CMT3 to maintain non-CpG methylation. Involved in RNA-directed DNA methylation.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	637
225432124	712	PREDICTED: DNA (cytosine-5)-methyltransf	0.982	0.879	0.572	0.0
341868935	710	domain rearranged methyltransferase [Vit	0.979	0.878	0.571	0.0
224112050	609	DNA methyltransferase [Populus trichocar	0.930	0.973	0.546	0.0
255556520	678	conserved hypothetical protein [Ricinus	0.927	0.871	0.554	0.0
356519874	702	PREDICTED: DNA (cytosine-5)-methyltransf	0.967	0.877	0.533	0.0
449441506	724	PREDICTED: uncharacterized protein LOC10	0.946	0.832	0.507	1e-180
449528407	644	PREDICTED: DNA (cytosine-5)-methyltransf	0.894	0.885	0.545	1e-177
356564666	729	PREDICTED: DNA (cytosine-5)-methyltransf	0.967	0.844	0.496	1e-174
357479111	1032	DNA (cytosine-5)-methyltransferase DRM2	0.962	0.593	0.489	1e-169
147779004	1960	hypothetical protein VITISV_038412 [Viti	0.766	0.248	0.568	1e-166

>gi|225432124|ref|XP_002264226.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Vitis vinifera]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/660 (57%), Positives = 478/660 (72%), Gaps = 34/660 (5%)

Query: 1   MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEIS 60
           MGF PSLVDKVIEEKG+D+VDLLLETL    ALQ+S S+SSDSLD+   D+D N+PP+ S
Sbjct: 62  MGFLPSLVDKVIEEKGEDDVDLLLETLCANAALQKSISESSDSLDSFLNDEDTNNPPKFS 121

Query: 61  TMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS 120
               PKEEP+V   G++ +KRA+L+MM FSV+EV+FA+DKLG+ APV ELVDFI AAQI+
Sbjct: 122 AGFHPKEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIA 180

Query: 121 ENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPIS 180
            + + + DD  + N+   ED ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PIS
Sbjct: 181 GSSKMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPIS 240

Query: 181 ELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDD 240
           ELAD IF+GQI      S +  T ++   +   D  S  + M      R         ++
Sbjct: 241 ELADSIFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEE 298

Query: 241 FS-NSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEE------------------- 280
           +S  + SQ + VD  ++ KGKRPKQESLDDSS+++  +W E                   
Sbjct: 299 YSPEAVSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRD 358

Query: 281 --KVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEP 338
             +V    +++GM       PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEP
Sbjct: 359 LNQVAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVTNVSHDSWNKISQFLYALEP 418

Query: 339 EFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCI 398
           EFVN+Q+FSAL+R+EGY+HNLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDTRK LSCI
Sbjct: 419 EFVNTQFFSALNRKEGYIHNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCI 478

Query: 399 NSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIEL 458
           +S TSGISQLC+R  K+L DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E 
Sbjct: 479 SSETSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLER 538

Query: 459 ILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAE 518
           ILGYP NHT+    SL  RL+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE
Sbjct: 539 ILGYPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAE 598

Query: 519 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578
           +TLH+LGI LKGV+S+E SET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K 
Sbjct: 599 LTLHQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKF 658

Query: 579 GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 637
           G  DFVICQN            +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 659 GGFDFVICQNPC--------TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 710

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|341868935|gb|AEK98591.1| domain rearranged methyltransferase [Vitis amurensis]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 377/660 (57%), Positives = 475/660 (71%), Gaps = 36/660 (5%)

Query: 1   MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEIS 60
           MGF PSLVDKVIEEKG+DNVDLLLETL    ALQ+S S+SSDSLD+   D+D N+PP+ S
Sbjct: 62  MGFLPSLVDKVIEEKGEDNVDLLLETLCANAALQKSISESSDSLDSFLNDEDTNNPPKFS 121

Query: 61  TMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS 120
               PKEEP+V   G++ +KRA+L+MM FSV+EV+FA+DKLG+ APV ELVDFI AAQI+
Sbjct: 122 AGFHPKEEPDV-SSGVNDDKRATLVMMKFSVDEVEFAMDKLGEGAPVNELVDFIIAAQIA 180

Query: 121 ENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPIS 180
            + + + DD  + N+   ED ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PIS
Sbjct: 181 GSSKMDADDPTYGNEERKEDCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPIS 240

Query: 181 ELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDD 240
           ELAD IF+GQI      S +  T ++   +   D  S  + M      R         ++
Sbjct: 241 ELADSIFAGQIAEKDKHSSA--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEE 298

Query: 241 FS-NSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEE------------------- 280
           +S  + SQ + VD  ++ KGKRPKQESLDDSS+++  +W E                   
Sbjct: 299 YSPEAVSQLRAVDIGDDHKGKRPKQESLDDSSAYIGPTWLEGRKGDHKFSSCRMPLPRRD 358

Query: 281 --KVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEP 338
             +V    +++GM       PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEP
Sbjct: 359 LNQVAGQLNKFGMSSISKPMPCKSLDQLVAKPPYFFYGNVSNVSHDSWNKISQFLYALEP 418

Query: 339 EFVNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCI 398
           EFVN+Q+FSAL+R+EG  HNLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDT K LSCI
Sbjct: 419 EFVNTQFFSALNRKEG--HNLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTIKQLSCI 476

Query: 399 NSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIEL 458
           +S TSGISQLC+R  K+L DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E 
Sbjct: 477 SSETSGISQLCDRLGKILVDSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLER 536

Query: 459 ILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAE 518
           ILGYP NHT+    SL  RL+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE
Sbjct: 537 ILGYPLNHTRVPEYSLIERLQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAE 596

Query: 519 VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL 578
           +TLH+LGI LKGV+S+E SET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K 
Sbjct: 597 LTLHQLGIHLKGVVSVEISETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKF 656

Query: 579 GSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 637
           G  DFVICQN            +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 657 GGFDFVICQNPC--------TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 708

Source: Vitis amurensis

Species: Vitis amurensis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112050|ref|XP_002316067.1| DNA methyltransferase [Populus trichocarpa] gi|222865107|gb|EEF02238.1| DNA methyltransferase [Populus trichocarpa]

 Score =  693 bits (1789), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/635 (54%), Positives = 451/635 (71%), Gaps = 42/635 (6%)

Query: 1   MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEIS 60
           MG+SPSLV++VIEE G+DNVDLLLE L+E + LQ+ NSQSSDSLD LF D+  +SPP+ S
Sbjct: 14  MGYSPSLVNRVIEENGEDNVDLLLEILMECSGLQKPNSQSSDSLDCLFDDRGESSPPKYS 73

Query: 61  TMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS 120
           T+   KEEP+V DE ++ +KR SLL MNF   EV+ A+DKLG++AP+ E++DFI AAQI+
Sbjct: 74  TVTGVKEEPDVFDE-VYDDKRVSLLKMNFPAKEVELAMDKLGENAPINEIIDFIIAAQIA 132

Query: 121 ENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPIS 180
            N ++ET+D P  +    ED +DETLYGTM+ TL LL MGFSEN+VSLAI+ +       
Sbjct: 133 NNLDRETEDMPDIDAENKEDVNDETLYGTMDKTLCLLNMGFSENEVSLAIDNW------- 185

Query: 181 ELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDD 240
                                  VK +TE C  D + QSR MNT ET +GKRP++E+ + 
Sbjct: 186 -----------------------VKSETEDCRRDAILQSRDMNTKETRKGKRPRQEHIEG 222

Query: 241 FSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNP 299
           +    +Q +H   +EN  G++PKQE    SSS+ +  W EEKV  +++ +GM + F  NP
Sbjct: 223 YQE--AQPRHDSLEENCAGEQPKQEYDYGSSSYFEHEWVEEKVNSDTTTFGMPKPFKCNP 280

Query: 300 CRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNL 359
           C+ ++++ A+PPYFFYGNV   S D W K+S FLY +EPEFV++Q+FSALSRREGY+HNL
Sbjct: 281 CKILDQIAAKPPYFFYGNVATASSDTWGKISQFLYGIEPEFVDTQFFSALSRREGYIHNL 340

Query: 360 PTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDS 419
           PT NR HI P+PP+T++D +P TKKWWPSWD RK +SC N  +SG SQLC+   ++L DS
Sbjct: 341 PTENRSHILPKPPITLEDLMPSTKKWWPSWDARKKMSCRNFDSSGSSQLCDMLGRMLDDS 400

Query: 420 RGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLE 479
           RG+LS++QQRD+L   + LNL+WVG  KL P++  H+E ILGYP NHT  A   LT R+ 
Sbjct: 401 RGLLSAEQQRDLLRHCQALNLMWVGPNKLSPLESAHLEKILGYPLNHTLIADYPLTERMY 460

Query: 480 SLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 539
           SLR+ FQTDTLGYHLSVLKS+FP G+T+LS+FSGIGGAE+TLHRLGI LKGV+S+ETSET
Sbjct: 461 SLRYSFQTDTLGYHLSVLKSIFPQGITVLSLFSGIGGAEITLHRLGIHLKGVVSVETSET 520

Query: 540 NRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQI 599
           NRR+LKRWW SSGQTG L QIEDI+ LT+   E L+      DFVICQNS  +       
Sbjct: 521 NRRVLKRWWYSSGQTGRLEQIEDIRKLTSSTVERLVENFVCFDFVICQNSFTR------- 573

Query: 600 SNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 634
             SK P + +  ++   FDF+L+ EFVRV+QRVRS
Sbjct: 574 -PSKIPGVGSGLESQHFFDFTLFNEFVRVLQRVRS 607

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556520|ref|XP_002519294.1| conserved hypothetical protein [Ricinus communis] gi|223541609|gb|EEF43158.1| conserved hypothetical protein [Ricinus communis]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/635 (55%), Positives = 440/635 (69%), Gaps = 44/635 (6%)

Query: 1   MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEIS 60
           MGF PSLVDKVI+E G+DNVDLLLE L+E +  Q+SNSQSSDSLDTLF DKDA++PPE S
Sbjct: 81  MGFLPSLVDKVIQENGEDNVDLLLEILMECSDPQKSNSQSSDSLDTLFNDKDASNPPEYS 140

Query: 61  TMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS 120
              QPKEEP+V   G    KRASLL MNFS  EVDFA++KLG DAPV E+VDFITAAQ++
Sbjct: 141 KFGQPKEEPDVF--GFDDSKRASLLHMNFSAEEVDFAMEKLGTDAPVDEIVDFITAAQVA 198

Query: 121 ENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPIS 180
            NF++E DD    +   N+  S  +                + + V+   E F  +    
Sbjct: 199 ANFDEERDDELEHDVEQNKYCSRHSR--------------MNPSHVARGGESFNME---- 240

Query: 181 ELADKIFSGQIFLDTPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDD 240
                        D  R  SY   + K E  S + VS+S  +N  E  RGKRPK+EY + 
Sbjct: 241 -----------IRDEQRRDSYG--RKKPENLSQEAVSRSSNLNLEEIHRGKRPKQEYTEG 287

Query: 241 FSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNP 299
           +SN  +Q +H  F+EN + + PK E   DSS   +S+W EEKV    + + + +      
Sbjct: 288 YSN--TQDEHFGFEENYEEEGPKPEYTADSSFSFESAWVEEKVDTEITGFRIPREPKFKS 345

Query: 300 CRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNL 359
           C+S++++VA+PPYF YGNV  VS+D W K+S FLY++EPEFVN+Q+FSALSR+EGY+HNL
Sbjct: 346 CKSVDRMVAKPPYFLYGNVATVSLDTWGKISQFLYAVEPEFVNTQFFSALSRKEGYVHNL 405

Query: 360 PTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDS 419
           PT NRFHI P+PPM+I DA+PH KKWWPSWDTRK LS IN  T+G+SQLC+R  ++L DS
Sbjct: 406 PTENRFHILPKPPMSILDAMPHIKKWWPSWDTRKQLSFINYETNGLSQLCDRLGRMLTDS 465

Query: 420 RGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLE 479
           RG++SSQQ+RDILH   KLNLVWVG +K+ P++PEH+ELILGYP NHTQ    SLT RL 
Sbjct: 466 RGLISSQQKRDILHHCHKLNLVWVGLHKVRPIEPEHLELILGYPLNHTQTTEGSLTERLH 525

Query: 480 SLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSET 539
           +LR+ FQ DTLGYHLSVLKSMFP G+T+LS+FSGIGGAEV LHRLGI +KGV+S+ETSET
Sbjct: 526 ALRYSFQIDTLGYHLSVLKSMFPEGITVLSLFSGIGGAEVALHRLGIHMKGVVSVETSET 585

Query: 540 NRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQI 599
            R+IL+ WW +SGQTGEL QIEDIQ LTTKK + LI + G  DFVICQ        S   
Sbjct: 586 KRKILRMWWRNSGQTGELEQIEDIQKLTTKKIDRLIERFGGFDFVICQ--------SPCT 637

Query: 600 SNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 634
             S +PKM   +D     DFSL+ EFVRV+QRVR+
Sbjct: 638 CASGNPKMEQRADARSALDFSLFCEFVRVLQRVRT 672

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519874|ref|XP_003528594.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/654 (53%), Positives = 439/654 (67%), Gaps = 38/654 (5%)

Query: 1   MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEIS 60
           MGF P LVDKVIEE G++N D+LLE L+ Y+ALQ+SNSQSS SLD+LF DKD   PPEIS
Sbjct: 54  MGFLPCLVDKVIEENGEENSDILLEALLRYSALQKSNSQSSVSLDSLFDDKD---PPEIS 110

Query: 61  TMVQPKEEPNVMDEGLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQIS 120
            + Q KEEP+ +  G+  + R SLLMMNFSV EV+FA+ KLG +A + ELVDFI A QI+
Sbjct: 111 NVNQAKEEPDELS-GVVDDTRGSLLMMNFSVEEVEFAIHKLGDEASIPELVDFIFALQIA 169

Query: 121 ENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPIS 180
           +  +KE DD      G   + ++E L+G M  TLQL EMGFSEN+VS AI+K GS+ PIS
Sbjct: 170 KKLKKEPDDITFTYYGRGNEVTNEKLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPIS 229

Query: 181 ELADKIFSGQIFLD-------------------TPRSRSYDTVKVKTEYCSPDVVSQSRK 221
           ELA+ IF+ Q  +D                    P    Y T +VK E  S +   QS +
Sbjct: 230 ELANFIFAEQNGIDYVMEYKFPTTSTYSVGIKEEPEMDLYGTAEVKVEGFSHEP-PQSSQ 288

Query: 222 MNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EE 280
           +N  ET      KEE   D   S    Q++D  EN +GKRPK E  DD  + L+ SW EE
Sbjct: 289 VNLEETYNDDMVKEEEGIDAFPSNVSDQYLDVVENGRGKRPKYEHDDDPVNCLEPSWVEE 348

Query: 281 KVKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEF 340
           +V    +   M +    NP R ++ V A+PP+F +GNV ++S D W KMS FLY +EPEF
Sbjct: 349 RVDAVVAE--MSRHPKPNPSRCLSSVAAKPPFFLFGNVSNISYDSWTKMSQFLYGIEPEF 406

Query: 341 VNSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINS 400
            N+Q FSA+ R EGY+HNLP  NRFHI P+PPMTI+DA+P TKKWWP WD+RK LS I  
Sbjct: 407 ANAQSFSAMDRIEGYIHNLPVENRFHILPKPPMTIEDAMPQTKKWWPPWDSRKLLSSIYC 466

Query: 401 GTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELIL 460
            T+GI+Q C+R    L DS GVL+S+QQ+DIL    +LNLVW+G +KLGPV+PE +ELIL
Sbjct: 467 ETNGIAQTCDRLGNFLADSGGVLTSEQQKDILRYCRRLNLVWIGKFKLGPVEPEQLELIL 526

Query: 461 GYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVT 520
           GYP NHT+A   ++  RL+SL++CFQTDTLGYHLSVL+ +FP GLTMLS+FSG+GGAE+ 
Sbjct: 527 GYPLNHTRATEGNVAERLKSLKYCFQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIA 586

Query: 521 LHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS 580
           LHRL IK+K V+S+ETSET R+IL++WW  SGQTG LVQIEDIQ LT+KK E LI K G 
Sbjct: 587 LHRLAIKIKAVVSVETSETKRKILEKWWRQSGQTGTLVQIEDIQKLTSKKLEGLISKFGG 646

Query: 581 IDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS 634
            D VI QN     P S   S     ++ A    L   DFS++ E VRV+QRVR 
Sbjct: 647 FDLVIYQN-----PCSYSSS-----RLQA-GVGLSALDFSVFCECVRVLQRVRG 689

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441506|ref|XP_004138523.1| PREDICTED: uncharacterized protein LOC101206985 [Cucumis sativus]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 360/710 (50%), Positives = 443/710 (62%), Gaps = 107/710 (15%)

Query: 1   MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEIS 60
           MGF PSLVD VIE+  Q ++                  QSSDSL+ L   K  ++PP +S
Sbjct: 47  MGFLPSLVDSVIEKNEQKSI-----------------PQSSDSLEGLQSGKMGSNPPHVS 89

Query: 61  TM----------------------------------VQPKEEPNVMDEGLHIE--KRASL 84
           T+                                  V PKEE    D+  HI    +ASL
Sbjct: 90  TVCHKQVQAAQTSKSESSDSLDSLFDDKDAHNEISSVIPKEE---ADDYYHISDTNKASL 146

Query: 85  LMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDE 144
           L+MNFS +EVDFA+DKLG DAP+ ELVDFI AAQI+   EKETDDA   N+   E+ +DE
Sbjct: 147 LVMNFSADEVDFAIDKLGGDAPLNELVDFIIAAQIAIKLEKETDDAFCRNELKKEE-NDE 205

Query: 145 TLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTP-------- 196
           TL+ TME TL+LLEMGFSEN+VSLAIEKFGS+T +SELAD I +G+I  D P        
Sbjct: 206 TLFVTMEKTLRLLEMGFSENEVSLAIEKFGSETQVSELADSIVTGRIASDYPGDVKCSPS 265

Query: 197 -------RSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQ 249
                   +R     KVK E  S  V    R +N     +GKRPKEE  DD  N T++  
Sbjct: 266 SFGIGGLYTREDYVTKVKAEESSSAVGPLPRNVNIEAIQKGKRPKEENMDDLLNPTTRLN 325

Query: 250 HVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPN--------SSRYGMQQAFN---- 296
                   KGKRPKQE  DD  S     W E KV P+        SSR  + ++ +    
Sbjct: 326 ------KHKGKRPKQEYADDLGSLYGPGWVESKVNPDITSFDIPPSSRLNLSRSLDKLVA 379

Query: 297 --------SNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSA 348
                   SNP R++ KVV +PP+F YGNV+D+S D W K+S FLY++EPEFV+++ FSA
Sbjct: 380 KPPCPPLKSNPSRALEKVVTKPPFFLYGNVLDISRDSWAKVSKFLYAVEPEFVDTRSFSA 439

Query: 349 LSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQL 408
           LSR EGY+HNLP  NRFHI P PPMTIQDA   TKKWWPSWDTRK+LSCINS T G+ QL
Sbjct: 440 LSRTEGYVHNLPCENRFHIIPLPPMTIQDAT-RTKKWWPSWDTRKYLSCINSETRGVPQL 498

Query: 409 CERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQ 468
           C+R  K L DS G  SS ++RDILH    LNL+WV  +KL PV+PE +E +LGYP NHTQ
Sbjct: 499 CDRLTKTLTDSGGHPSSHEERDILHHCIALNLIWVSQFKLAPVEPEQLECVLGYPVNHTQ 558

Query: 469 AAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKL 528
            A +S   RL+ L++CFQTD LGYHLSVLKSMFP GL +LS+FSGIGGAE+ LHRLGI L
Sbjct: 559 DAESSSIERLQYLKYCFQTDALGYHLSVLKSMFPEGLVVLSIFSGIGGAEIALHRLGIHL 618

Query: 529 KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQN 588
           K V+S+E+S   RRILK+WW SSGQTGEL QIEDIQ LT+ K  + I K G  D VICQN
Sbjct: 619 KVVVSVESSAAKRRILKKWWHSSGQTGELEQIEDIQKLTSIKINNWITKYGGFDLVICQN 678

Query: 589 SVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SMKR 637
                P S+ +S+SK    + +++ +  FDFS++YEFVRV+Q VR +M R
Sbjct: 679 -----PCSRCLSSSK-LNQSGDAEGIASFDFSIFYEFVRVLQSVRNTMHR 722

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449528407|ref|XP_004171196.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM2-like [Cucumis sativus]

 Score =  627 bits (1617), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 343/629 (54%), Positives = 421/629 (66%), Gaps = 59/629 (9%)

Query: 48  FGDKDANSPPEISTMVQPKEEPNVMDEGLHIE--KRASLLMMNFSVNEVDFALDKLGKDA 105
           F DKDA++  EIS+++ PKEE    D+  HI    +ASLL+MNFS +EVDFA+DKLG DA
Sbjct: 34  FDDKDAHN--EISSVI-PKEE---ADDYYHISDTNKASLLVMNFSADEVDFAIDKLGGDA 87

Query: 106 PVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITLQLLEMGFSENQ 165
           P+ ELVDFI AAQI+   EKETDDA   N+   E+ +DETL+ TME TL+LLEMGFSEN+
Sbjct: 88  PLNELVDFIIAAQIAIKLEKETDDAFCRNELKKEE-NDETLFVTMEKTLRLLEMGFSENE 146

Query: 166 VSLAIEKFGSKTPISELADKIFSGQIFLDTPRSRSYD---------------TVKVKTEY 210
           VSLAIEKFGS+T +SELAD I +G+I  D P                       KVK E 
Sbjct: 147 VSLAIEKFGSETQVSELADSIVTGRIASDYPGDVKCSPSSFGIGGLYTPEDYVTKVKAEE 206

Query: 211 CSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQESLDDS 270
            S  V    R +N     +GKRPKEE  DD  N T++          KGKRPKQE  DD 
Sbjct: 207 SSSAVGPLPRNVNIEAIQKGKRPKEENMDDLLNPTTRLN------KHKGKRPKQEYADDL 260

Query: 271 SSFLDSSW-EEKVKPN--------SSRYGMQQAFN------------SNPCRSINKVVAQ 309
            S     W E KV P+        SSR  + ++ +            SNP R++ KVV +
Sbjct: 261 GSLYGPGWVESKVNPDITSFDIPPSSRLNLSRSLDKLVAKPPCPPLKSNPSRALEKVVTK 320

Query: 310 PPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP 369
           PP+F YGNV+D+S D W K+S FLY++EPEFV+++ FSALSR EGY+HNLP  NRFHI P
Sbjct: 321 PPFFLYGNVLDISRDSWAKVSKFLYAVEPEFVDTRSFSALSRTEGYVHNLPCENRFHIIP 380

Query: 370 EPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQR 429
            PPMTIQDA   TKKWWPSWDTRK+LSCINS T G+ QLC+R  K L DS G  SS Q+R
Sbjct: 381 LPPMTIQDAT-RTKKWWPSWDTRKYLSCINSETRGVPQLCDRLTKTLTDSGGHPSSHQER 439

Query: 430 DILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDT 489
           DILH    LNL+WV  +KL PV+PE +E +LGYP NHTQ A +S   RL+ L++CFQTD 
Sbjct: 440 DILHHCIALNLIWVSQFKLAPVEPEQLECVLGYPVNHTQDAESSSIERLQYLKYCFQTDA 499

Query: 490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE 549
           LGYHLSVLKSMFP GL +LS+FSGIGGAE+ LHRLGI LK V+S+E+S   RRILK+WW 
Sbjct: 500 LGYHLSVLKSMFPEGLVVLSIFSGIGGAEIALHRLGIHLKVVVSVESSAAKRRILKKWWH 559

Query: 550 SSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAA 609
           SSGQTGEL QIEDIQ LT+ K  + I K G  D VICQN     P S+ +S+SK    + 
Sbjct: 560 SSGQTGELEQIEDIQKLTSIKINNWITKYGGFDLVICQN-----PCSRCLSSSK-LNQSG 613

Query: 610 ESDNLPDFDFSLYYEFVRVVQRVR-SMKR 637
           +++ +  FDFS++YEFVRV+Q VR +M R
Sbjct: 614 DAEGIASFDFSIFYEFVRVLQSVRNTMHR 642

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564666|ref|XP_003550572.1| PREDICTED: DNA (cytosine-5)-methyltransferase DRM1-like [Glycine max]

 Score =  617 bits (1590), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 343/691 (49%), Positives = 436/691 (63%), Gaps = 75/691 (10%)

Query: 1   MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDT-------------- 46
           MGF P LVDKVIEE G++N D LLE L+ Y+A  +SN  S DSL                
Sbjct: 54  MGFLPCLVDKVIEENGEENSDTLLEALLRYSA-HKSNCDSFDSLGVSHNTSRGRSAPNFY 112

Query: 47  ----------------------LFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRASL 84
                                 LF DKD   PPEIS + Q KEEP+ +  G+  +KR SL
Sbjct: 113 PDGHSKEALQKSNSQSSDSLDSLFDDKD---PPEISNVNQAKEEPDELS-GVIDDKRGSL 168

Query: 85  LMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDE 144
           LMMNFSV EV+ A+ KLG +A + ELVDFI A QI++  +KE DD      G   + ++E
Sbjct: 169 LMMNFSVEEVELAIHKLGDEASIPELVDFIFAWQIAKKLKKEPDDITFTYYGRGNEVTNE 228

Query: 145 TLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD---------- 194
            L+G M  TLQL EMGFSEN+VS AI+K GS+ PISELA+ IF+ Q  +D          
Sbjct: 229 KLFGIMAKTLQLFEMGFSENEVSSAIDKLGSEAPISELANFIFAEQNGIDYVMEYKFPTT 288

Query: 195 ---------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNST 245
                     P    Y T +VK E  S +   QS ++N  ET      KEE   D   S 
Sbjct: 289 STYSVGIKEEPEMDLYGTAEVKVEDFSNEP-PQSSQVNLEETYNEDMVKEEEGIDAFPSY 347

Query: 246 SQFQHVDFQENRKGKRPKQESLDDSSSFLDSSW-EEKVKPNSSRYGMQQAFNSNPCRSIN 304
              Q++D  EN +GKRPK E  DDS + L+ SW EE+V    +   M +    NP R ++
Sbjct: 348 VSDQYLDVVENGRGKRPKYEHDDDSITCLEPSWVEERVDVVVAE--MSRRPKPNPSRCLS 405

Query: 305 KVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR 364
            V A+PP+F +GNV ++S D W KMS FLY +EPEF N+Q FSAL R EGY+HNLP  NR
Sbjct: 406 SVAAKPPFFLFGNVSNISYDSWTKMSKFLYGIEPEFANAQSFSALDRIEGYIHNLPVENR 465

Query: 365 FHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLS 424
           FHI P+PPMTI+DA+P TKKWWP WD+RK LS I   T+GI+Q C+R   +L DS GVL+
Sbjct: 466 FHILPKPPMTIEDAMPLTKKWWPPWDSRKQLSSIYCETNGIAQTCDRLGNILADSGGVLT 525

Query: 425 SQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHC 484
           S+ Q+DIL     LNLVW+G +KLGPV+PE +ELILGYP NHT+A+  ++  RL+SL++C
Sbjct: 526 SELQKDILRYCRGLNLVWIGKFKLGPVEPEQLELILGYPLNHTRASEGNVAERLKSLKYC 585

Query: 485 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 544
           FQTDTLGYHLSVL+ +FP GLTMLS+FSG+GGAE+ LHRLGIK+K V+S+ETSET R+IL
Sbjct: 586 FQTDTLGYHLSVLRPIFPHGLTMLSLFSGLGGAEIALHRLGIKIKVVVSVETSETKRKIL 645

Query: 545 KRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKD 604
           +RWW  SGQTG LVQ+EDIQ LT+KK E LI K G  D VI QN    + +S+ ++    
Sbjct: 646 ERWWRQSGQTGTLVQLEDIQKLTSKKLEGLISKFGGFDLVIYQNPCSNL-SSRLLAGV-- 702

Query: 605 PKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635
                    LP  +FS++ E VRV+QR+R M
Sbjct: 703 --------GLPALEFSVFCECVRVLQRIRGM 725

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479111|ref|XP_003609841.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula] gi|355510896|gb|AES92038.1| DNA (cytosine-5)-methyltransferase DRM2 [Medicago truncatula]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 339/693 (48%), Positives = 440/693 (63%), Gaps = 80/693 (11%)

Query: 1   MGFSPSLVDKVIEEKG-----QDNVDLLLETLIEYN------------------------ 31
           MGF P LVDKVIEE G     ++N D LLE L+  +                        
Sbjct: 54  MGFLPGLVDKVIEENGTLCVSEENSDALLEILLRCSTNGDSSDSLEGSLNTNEHRSIPNF 113

Query: 32  --------ALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEKRAS 83
                   ALQ SN +SSDSLD+LF DKD+   PE+S + QPKEE + + E +  + R +
Sbjct: 114 FPNAHSKEALQISNLESSDSLDSLFDDKDS---PEVSMINQPKEEVDEIFEDIE-DSRGT 169

Query: 84  LLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDK-S 142
           LLMMNFS  EV+FA+ KLG  APV ELVDFI AAQI++  +KE  +         E + S
Sbjct: 170 LLMMNFSAEEVEFAIRKLGNKAPVPELVDFIFAAQIAKKMKKEEAEEDDIKCYVREKEIS 229

Query: 143 DETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLD-------- 194
           +E L+G M  TLQL EMGFSEN++S A++K G   PISELA+ IF+ Q  ++        
Sbjct: 230 NEQLFGIMAKTLQLFEMGFSENEISSAVDKLGPDVPISELANFIFAEQNGIEYVMEYKYP 289

Query: 195 ----------TPRSRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEE-YFDDFSN 243
                       +S  Y T +VK E  S +  SQSR++N  ET  G+R KEE Y D+F +
Sbjct: 290 SGPSYSWIKEEEQSDMYGTAEVKVEDFSHEP-SQSRQVNLGETGTGERVKEEDYIDEFPD 348

Query: 244 STSQFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSI 303
                    F EN + KRPK E  D+S+S LD  W E++  ++    M +   S P RS+
Sbjct: 349 DVKP----GFMENDRNKRPKYEYDDNSNSSLDPYWVEEMV-DTVVATMSRRNKSTPSRSL 403

Query: 304 NKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTN 363
           + V A+PP+F +GNV +++ D W KMS FLY +EPEFVN++ FSAL+R EGY+HNLPT N
Sbjct: 404 SSVAAKPPFFLFGNVSNITYDSWKKMSQFLYCIEPEFVNTELFSALNRIEGYIHNLPTEN 463

Query: 364 RFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVL 423
           RF I P+PPMTI+DAIP TKKWWP WD+RK L+C    T GI+QLC+R  + L +S G+L
Sbjct: 464 RFQILPKPPMTIEDAIPRTKKWWPPWDSRKKLNCNYCETGGITQLCDRLGRALANSGGIL 523

Query: 424 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRH 483
           +SQQQ+DIL     LNLVW G YKLGP++PEH++ ILGYP NHT+     LT RL+ L+H
Sbjct: 524 TSQQQKDILRYCRGLNLVWTGKYKLGPIEPEHLDHILGYPLNHTRTDECDLTERLQLLKH 583

Query: 484 CFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI 543
            FQTDTLGYHLSVLK +FP G+T+LS+FSGIGGAEV LHRLGIK+K ++S+ETS T R+I
Sbjct: 584 SFQTDTLGYHLSVLKPIFPTGVTLLSIFSGIGGAEVALHRLGIKIKALVSVETSATKRKI 643

Query: 544 LKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQ-IPNSKQISNS 602
           L++WW SSGQ+G LVQIE+IQ LT+KKFE+LI+  G  D VI QN   Q I    Q+   
Sbjct: 644 LEKWWRSSGQSGTLVQIEEIQKLTSKKFENLINNFGVFDLVIYQNPCSQPIVRPHQVG-- 701

Query: 603 KDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635
                      L   +FS + E VR++QRVR++
Sbjct: 702 ----------GLSAVEFSAFCESVRILQRVRAL 724

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147779004|emb|CAN75753.1| hypothetical protein VITISV_038412 [Vitis vinifera]

 Score =  590 bits (1522), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 296/521 (56%), Positives = 372/521 (71%), Gaps = 33/521 (6%)

Query: 140  DKSDETLYGTMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFLDTPRSR 199
            D ++E L+GTM+ TL+LLEMGFSEN++S AIEKFGS+ PISELAD IF+GQI      S 
Sbjct: 1361 DCNNEALFGTMDKTLRLLEMGFSENEISSAIEKFGSEVPISELADSIFAGQIAEKDKHSS 1420

Query: 200  SYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFS-NSTSQFQHVDFQENRK 258
            +  T ++   +   D  S  + M      R         +++S  + SQ + VD  ++ K
Sbjct: 1421 A--TFRLNHSHTGNDYRSFGKGMEDGLKRRSSGTFMVKTEEYSPEAVSQLRAVDIGDDHK 1478

Query: 259  GKRPKQESLDDSSSFLDSSWEE---------------------KVKPNSSRYGMQQAFNS 297
            GKRPKQESLDDSS+++  +W E                     +V    +++GM      
Sbjct: 1479 GKRPKQESLDDSSAYIGPTWJEGRKGDHKFSSCRMPLPRRDLNQVAGQLNKFGMSSISKP 1538

Query: 298  NPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLH 357
             PC+S++++VA+PPYFFYGNV +VS D W K+S FLY+LEPEFVN+Q+FSAL+R+EGY+H
Sbjct: 1539 MPCKSLDQLVAKPPYFFYGNVXNVSHDSWNKISQFLYALEPEFVNTQFFSALNRKEGYIH 1598

Query: 358  NLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR 417
            NLP+ NRFHI P+PPMTI++ IP+TKKWWPSWDTRK LSCI+S TSGISQLC+R  K+L 
Sbjct: 1599 NLPSENRFHILPKPPMTIEEVIPYTKKWWPSWDTRKQLSCISSETSGISQLCDRLGKILV 1658

Query: 418  DSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTAR 477
            DSRG+LS +QQRDILH    LNLVWVG  KL P++PEH+E ILGYP NHT+    SL  R
Sbjct: 1659 DSRGLLSFEQQRDILHHCRTLNLVWVGQCKLSPIEPEHLERILGYPLNHTRVPEYSLIER 1718

Query: 478  LESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETS 537
            L+SLRHCFQ DTLGYHLSVLKSMFP GLTMLS+FSGIGGAE+TLH+LGI LKGV+S+E S
Sbjct: 1719 LQSLRHCFQIDTLGYHLSVLKSMFPKGLTMLSLFSGIGGAELTLHQLGIHLKGVVSVEIS 1778

Query: 538  ETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSK 597
            ET R ILK+WW ++GQTGELVQI+DIQ L + K ESLI K G  DFVICQN         
Sbjct: 1779 ETKRNILKKWWHNTGQTGELVQIDDIQKLASSKLESLIEKFGGFDFVICQNPC------- 1831

Query: 598  QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRS-MKR 637
               +S++ KM A+ D+L  FDFSL+ EFVRV+ RVRS M+R
Sbjct: 1832 -TYSSRNSKMVADGDSLTGFDFSLFCEFVRVLHRVRSTMER 1871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	637
TAIR|locus:2089075	710	DRM3 "domains rearranged methy	0.613	0.550	0.478	7.1e-126
TAIR|locus:2222627	626	DRM2 "domains rearranged methy	0.511	0.520	0.430	2.4e-85
TAIR|locus:2150991	624	DRM1 "domains rearranged methy	0.508	0.519	0.4	1.3e-80

TAIR|locus:2089075 DRM3 "domains rearranged methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
 Identities = 200/418 (47%), Positives = 267/418 (63%)

Query:   223 NTSETSRGKRPKEEYFDDFSNSTSQFQHVDFQENRKGKRPKQEXXXXXXXXXXXXW-EEK 281
             N  ETSRGKRPK+E  D+  N+  + ++  + +  +GKR + E            W +++
Sbjct:   314 NVGETSRGKRPKDE--DE--NAYPE-EYTGYDD--RGKRLRPEDMGDSSSFMETPWMQDE 366

Query:   282 VKPNSSRYGMQQAFNSNPCRSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFV 341
              K N+  Y           +S+   VA+ PYFFYG + ++S   W K+S FL+ + PE V
Sbjct:   367 WKDNT--YEFPSVMQPRLSQSLGPKVARRPYFFYGQLGELSPSWWSKISGFLFGIHPEHV 424

Query:   342 NSQYFSALSRREGYLHNLPTTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSG 401
             +++  SAL R EGYLHNLPT NRF+  P P +TIQDA+PH + WWP WD RKH    NSG
Sbjct:   425 DTRLCSALRRTEGYLHNLPTVNRFNTLPNPRLTIQDAMPHMRSWWPQWDIRKHF---NSG 481

Query:   402 T-SGISQ---LCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIE 457
             T S +     LCER  + + + +G  + Q Q  IL      NL+W+    L P++PEH+E
Sbjct:   482 TCSNMKDATLLCERIGRRIAECKGKPTQQDQTLILRHCHTSNLIWIAPNILSPLEPEHLE 541

Query:   458 LILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGA 517
              I+GYP NHT   G  L  RL+   +CFQTDTLGYHLSVLKSMFP GLT+LS+FSGIGGA
Sbjct:   542 CIMGYPMNHTNIGGGRLAERLKLFDYCFQTDTLGYHLSVLKSMFPQGLTVLSLFSGIGGA 601

Query:   518 EVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK 577
             E+ L RLGI LKGV+S+E+   +R ILKRWW++SGQTGELVQIE+I++LT K+ E+L+ +
Sbjct:   602 EIALDRLGIHLKGVVSVESCGLSRNILKRWWQTSGQTGELVQIEEIKSLTAKRLETLMQR 661

Query:   578 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM 635
              G  DFVICQN    +  SK+ISNS+    A E      FD++L+ EF RV +RVR M
Sbjct:   662 FGGFDFVICQNPSTPLDLSKEISNSE----ACE------FDYTLFNEFARVTKRVRDM 709

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=ISS

GO:0006306 "DNA methylation" evidence=IMP

TAIR|locus:2222627 DRM2 "domains rearranged methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 727 (261.0 bits), Expect = 2.4e-85, Sum P(2) = 2.4e-85
 Identities = 146/339 (43%), Positives = 205/339 (60%)

Query:   301 RSINKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLP 360
             RS+ ++   PP+F+Y NV       W  +S  L+ + PEFV+S+YF   +R+ GY+HNLP
Sbjct:   297 RSLPELARGPPFFYYENVALTPKGVWETISRHLFEIPPEFVDSKYFCVAARKRGYIHNLP 356

Query:   361 TTNRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLR--D 418
               NRF I P P  TI DA P +K+WWP WD R  L+CI + T G +QL  R    L   +
Sbjct:   357 INNRFQIQPPPKYTIHDAFPLSKRWWPEWDKRTKLNCILTCT-GSAQLTNRIRVALEPYN 415

Query:   419 SRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARL 478
                      QR ++ + +K NLVWVG  K  P++P+ +E ILG+P NHT+  G S T R 
Sbjct:   416 EEPEPPKHVQRYVIDQCKKWNLVWVGKNKAAPLEPDEMESILGFPKNHTRGGGMSRTERF 475

Query:   479 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE 538
             +SL + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+K V+S+E S+
Sbjct:   476 KSLGNSFQVDTVAYHLSVLKPIFPHGINVLSLFTGIGGGEVALHRLQIKMKLVVSVEISK 535

Query:   539 TNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 598
              NR ILK +WE + QTGEL++  DIQ LT    E L+ K G  D VI  +    +    +
Sbjct:   536 VNRNILKDFWEQTNQTGELIEFSDIQHLTNDTIEGLMEKYGGFDLVIGGSPCNNLAGGNR 595

Query:   599 ISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 637
             +S     ++  E D       SL++E+ R+++ VR+  R
Sbjct:   596 VS-----RVGLEGDQS-----SLFFEYCRILEVVRARMR 624

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0008170 "N-methyltransferase activity" evidence=ISS

GO:0016458 "gene silencing" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IGI

TAIR|locus:2150991 DRM1 "domains rearranged methylase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 672 (241.6 bits), Expect = 1.3e-80, Sum P(3) = 1.3e-80
 Identities = 134/335 (40%), Positives = 201/335 (60%)

Query:   303 INKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 362
             I  +   PP+F+Y NV       W K+S  LY + PEFV+S++F A +R+ GY+HNLP  
Sbjct:   297 IPDIARGPPFFYYENVAMTPKGVWAKISSHLYDIVPEFVDSKHFCAAARKRGYIHNLPIQ 356

Query:   363 NRFHIPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGV 422
             NRF I P    TIQ+A P TK+WWPSWD R  L+C+ +  +  S+L E+  + L    G 
Sbjct:   357 NRFQIQPPQHNTIQEAFPLTKRWWPSWDGRTKLNCLLTCIAS-SRLTEKIREALERYDGE 415

Query:   423 LSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLR 482
                  Q+ +++  +K NLVWVG  KL P+D + +E +LG+P +HT+  G S T R +SL 
Sbjct:   416 TPLDVQKWVMYECKKWNLVWVGKNKLAPLDADEMEKLLGFPRDHTRGGGISTTDRYKSLG 475

Query:   483 HCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR 542
             + FQ DT+ YHLSVLK +FP G+ +LS+F+GIGG EV LHRL IK+  V+S+E S+ NR 
Sbjct:   476 NSFQVDTVAYHLSVLKPLFPNGINVLSLFTGIGGGEVALHRLQIKMNVVVSVEISDANRN 535

Query:   543 ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNS 602
             IL+ +WE + Q G L + +D+Q L     E L+ + G  D VI  +     P +     +
Sbjct:   536 ILRSFWEQTNQKGILREFKDVQKLDDNTIERLMDEYGGFDLVIGGS-----PCNNLAGGN 590

Query:   603 KDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMKR 637
             +  ++    ++      SL++++ R+++ VR   R
Sbjct:   591 RHHRVGLGGEHS-----SLFFDYCRILEAVRRKAR 620

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006306 "DNA methylation" evidence=IEA;IMP

GO:0006346 "methylation-dependent chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0003886 "DNA (cytosine-5-)-methyltransferase activity" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IGI

GO:0050832 "defense response to fungus" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1.37	LOW CONFIDENCE prediction!
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019681001 SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (691 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	637
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	99.9
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	99.9
PRK10458	467	DNA cytosine methylase; Provisional	99.86
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.85
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	99.85
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	99.26
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	99.2
PRK10458	467	DNA cytosine methylase; Provisional	98.54
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	98.39
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.82
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	97.81
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	97.45
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.39
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.24
COG2520	341	Predicted methyltransferase [General function pred	97.17
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.14
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.11
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	97.05
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	97.05
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	96.96
PHA03412	241	putative methyltransferase; Provisional	96.87
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	96.79
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	96.66
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	96.62
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	96.52
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	96.49
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	96.48
KOG0919	338	consensus C-5 cytosine-specific DNA methylase [Tra	96.46
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	96.4
PHA03411	279	putative methyltransferase; Provisional	96.35
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	96.34
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	96.21
COG0742	187	N6-adenine-specific methylase [DNA replication, re	96.21
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	96.19
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	96.19
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	96.18
PRK14904	445	16S rRNA methyltransferase B; Provisional	96.17
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.14
PRK10901	427	16S rRNA methyltransferase B; Provisional	96.13
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	96.07
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	96.04
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	95.95
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	95.87
PRK14902	444	16S rRNA methyltransferase B; Provisional	95.85
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	95.69
PRK14967	223	putative methyltransferase; Provisional	95.62
PRK14901	434	16S rRNA methyltransferase B; Provisional	95.58
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	95.58
COG2265	432	TrmA SAM-dependent methyltransferases related to t	95.53
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	95.48
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	95.43
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	95.4
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	95.27
PRK14903	431	16S rRNA methyltransferase B; Provisional	95.26
smart00165	37	UBA Ubiquitin associated domain. Present in Rad23,	95.18
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	95.13
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	95.12
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.07
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	94.92
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	94.91
PF00627	37	UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma	94.65
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	94.55
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	94.31
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	94.3
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	94.29
COG4123	248	Predicted O-methyltransferase [General function pr	94.26
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	94.25
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	94.14
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	94.13
PRK14968	188	putative methyltransferase; Provisional	93.96
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	93.93
cd00194	38	UBA Ubiquitin Associated domain. The UBA domain is	93.88
COG2890	280	HemK Methylase of polypeptide chain release factor	93.83
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	93.82
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	93.65
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	93.49
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	93.42
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	93.41
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	93.1
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	93.09
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	92.91
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	92.87
PRK11207	197	tellurite resistance protein TehB; Provisional	92.64
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	92.53
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	92.48
PRK07402	196	precorrin-6B methylase; Provisional	92.44
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	92.41
KOG2904	328	consensus Predicted methyltransferase [General fun	92.37
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	92.08
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	92.07
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	91.82
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	91.81
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	91.53
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	91.37
PF09288	55	UBA_3: Fungal ubiquitin-associated domain ; InterP	91.34
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	90.99
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	90.95
KOG2730	263	consensus Methylase [General function prediction o	90.86
PLN02585	315	magnesium protoporphyrin IX methyltransferase	90.81
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	90.75
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	90.49
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	90.45
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	90.39
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	90.34
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	90.1
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	89.77
KOG1227	351	consensus Putative methyltransferase [General func	89.73
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	89.59
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	89.01
PRK00117	157	recX recombination regulator RecX; Reviewed	88.73
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	88.68
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	88.57
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	88.42
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	88.41
PLN02244	340	tocopherol O-methyltransferase	88.36
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	88.26
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	88.16
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	87.95
PRK10742	250	putative methyltransferase; Provisional	87.71
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	87.44
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	87.29
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	87.09
PRK10258	251	biotin biosynthesis protein BioC; Provisional	87.0
PRK12335	287	tellurite resistance protein TehB; Provisional	86.95
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	86.77
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	85.69
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	85.65
PRK05785	226	hypothetical protein; Provisional	85.64
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	85.61
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	85.21
COG1041	347	Predicted DNA modification methylase [DNA replicat	85.12
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	85.1
KOG0944	763	consensus Ubiquitin-specific protease UBP14 [Postt	85.09
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	85.07
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	84.56
PLN02233	261	ubiquinone biosynthesis methyltransferase	84.43
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	84.1
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	83.95
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	83.91
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	83.86
PRK13255	218	thiopurine S-methyltransferase; Reviewed	83.48
PF07499	47	RuvA_C: RuvA, C-terminal domain; InterPro: IPR0111	83.42
PRK14135	263	recX recombination regulator RecX; Provisional	83.03
PRK00811	283	spermidine synthase; Provisional	82.95
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	82.51
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	82.0
PLN02672	1082	methionine S-methyltransferase	81.93
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	81.84
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	81.63
TIGR00438	188	rrmJ cell division protein FtsJ.	81.15
PRK14135	263	recX recombination regulator RecX; Provisional	81.06
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	80.78
PRK08317	241	hypothetical protein; Provisional	80.76
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	80.62
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	80.55
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	80.23
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	80.09

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=99.90  E-value=2.3e-24  Score=219.47  Aligned_cols=105  Identities=22%  Similarity=0.401  Sum_probs=87.3

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  584 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  584 (637)
                      ||||||||||||+++||+++||  ++++|+|+|+.|+++|+.+|.       .+..+||++++.+.|+.      ++|||
T Consensus         1 ~~~~dlFsG~Gg~~~g~~~ag~--~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~------~~D~l   65 (335)
T PF00145_consen    1 MKVIDLFSGIGGFSLGLEQAGF--EVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPK------DVDLL   65 (335)
T ss_dssp             EEEEEET-TTTHHHHHHHHTTE--EEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHH------T-SEE
T ss_pred             CcEEEEccCccHHHHHHHhcCc--EEEEEeecCHHHHHhhhhccc-------ccccccccccccccccc------cceEE
Confidence            5899999999999999999996  689999999999999998774       36789999999886652      59999


Q ss_pred             EEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          585 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       585 IGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      +||||||+||.+            |++.|+.|+|+.||++|+|+|+++||..
T Consensus        66 ~ggpPCQ~fS~a------------g~~~~~~d~r~~L~~~~~~~v~~~~Pk~  105 (335)
T PF00145_consen   66 IGGPPCQGFSIA------------GKRKGFDDPRNSLFFEFLRIVKELKPKY  105 (335)
T ss_dssp             EEE---TTTSTT------------STHHCCCCHTTSHHHHHHHHHHHHS-SE
T ss_pred             EeccCCceEecc------------ccccccccccchhhHHHHHHHhhccceE
Confidence            999999999975            3356899999999999999999999864

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.90  E-value=3.7e-24  Score=225.21  Aligned_cols=109  Identities=20%  Similarity=0.350  Sum_probs=95.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .++++|||||||||+++||+++||  ++++++|||+.|++||+.++..     ..++..||.++..+.+...     ++|
T Consensus         2 ~~~~~idLFsG~GG~~lGf~~agf--~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~-----~~D   69 (328)
T COG0270           2 EKMKVIDLFAGIGGLSLGFEEAGF--EIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKS-----DVD   69 (328)
T ss_pred             CCceEEeeccCCchHHHHHHhcCC--eEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhcccc-----CCC
Confidence            468999999999999999999996  6899999999999999876532     3466789999998776532     799


Q ss_pred             EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634          583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  635 (637)
Q Consensus       583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~  635 (637)
                      +||||||||+||.            ||+|.|++|+|++||++|+|+|..+||.
T Consensus        70 vligGpPCQ~FS~------------aG~r~~~~D~R~~L~~~~~r~I~~~~P~  110 (328)
T COG0270          70 VLIGGPPCQDFSI------------AGKRRGYDDPRGSLFLEFIRLIEQLRPK  110 (328)
T ss_pred             EEEeCCCCcchhh------------cCcccCCcCccceeeHHHHHHHHhhCCC
Confidence            9999999999996            4567789999999999999999999984

>PRK10458 DNA cytosine methylase; Provisional

Probab=99.86  E-value=4.4e-22  Score=218.78  Aligned_cols=126  Identities=17%  Similarity=0.284  Sum_probs=97.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH--------Hh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE--------SL  574 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie--------~l  574 (637)
                      .++++|||||||||+++||+++|+  ++|+++|+|+.|++||+.+|..  .+..++..+||++++...+.        ..
T Consensus        87 ~~~~~iDLFsGiGGl~lGfe~aG~--~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~  162 (467)
T PRK10458         87 YAFRFIDLFAGIGGIRRGFEAIGG--QCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDITLSHKEGVSDEEAAEH  162 (467)
T ss_pred             CCceEEEeCcCccHHHHHHHHcCC--EEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCccccccccchhhhhhh
Confidence            368999999999999999999998  5899999999999999987642  23344567899999854322        11


Q ss_pred             h-hccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006634          575 I-HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       575 ~-~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~-D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      + ...+++|||+||||||+||.++..  +++  -.|++.|+. |+|++||++|+|||+++||.+
T Consensus       163 ~~~~~p~~DvL~gGpPCQ~FS~AG~~--k~~--~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~  222 (467)
T PRK10458        163 IRQHIPDHDVLLAGFPCQPFSLAGVS--KKN--SLGRAHGFECETQGTLFFDVARIIDAKRPAI  222 (467)
T ss_pred             hhccCCCCCEEEEcCCCCccchhccc--ccc--cccccccccCCccccHHHHHHHHHHHhCCCE
Confidence            1 134689999999999999987541  111  124455775 889999999999999999864

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.85  E-value=8.3e-22  Score=202.87  Aligned_cols=106  Identities=19%  Similarity=0.364  Sum_probs=91.7

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  584 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  584 (637)
                      ++|+|||||+||+++||+++|+  ++++++|+++.|+++|+.+|..      .++.+||++++...+      .+++|||
T Consensus         1 ~~v~dLFsG~Gg~~~gl~~~G~--~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~------~~~~D~l   66 (275)
T cd00315           1 LRVIDLFAGIGGFRLGLEKAGF--EIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDF------IPDIDLL   66 (275)
T ss_pred             CcEEEEccCcchHHHHHHHcCC--EEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhc------CCCCCEE
Confidence            5899999999999999999997  5799999999999999986632      256799999987543      3579999


Q ss_pred             EEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          585 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       585 IGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      +||||||+||.+            |++.|..|+|+.||++|+|+|+++||.+
T Consensus        67 ~~gpPCq~fS~a------------g~~~~~~d~r~~L~~~~~~~i~~~~P~~  106 (275)
T cd00315          67 TGGFPCQPFSIA------------GKRKGFEDTRGTLFFEIIRILKEKKPKY  106 (275)
T ss_pred             EeCCCChhhhHH------------hhcCCCCCchHHHHHHHHHHHHhcCCCE
Confidence            999999999975            3356788999999999999999999864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=99.85  E-value=8.4e-22  Score=206.53  Aligned_cols=103  Identities=17%  Similarity=0.366  Sum_probs=88.7

Q ss_pred             ccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEE
Q 006634          507 MLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVIC  586 (637)
Q Consensus       507 vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIG  586 (637)
                      ||||||||||+++||+++||  ++++++|+++.|+++|+.+|.     + .++.+||++++..++       +++|||+|
T Consensus         1 vidLF~G~GG~~~Gl~~aG~--~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGF--KCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDI-------PDFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcCC--eEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhC-------CCcCEEEe
Confidence            68999999999999999997  579999999999999987653     3 355789999886543       47999999


Q ss_pred             cCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          587 QNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       587 GpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      |||||+||.+            |++.|++|+|+.||++|+|+|+++||..
T Consensus        66 g~PCq~fS~a------------g~~~~~~d~r~~L~~~~~r~i~~~~P~~  103 (315)
T TIGR00675        66 GFPCQPFSIA------------GKRKGFEDTRGTLFFEIVRILKEKKPKF  103 (315)
T ss_pred             cCCCcccchh------------cccCCCCCchhhHHHHHHHHHhhcCCCE
Confidence            9999999975            3466888999999999999999999853

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=99.26  E-value=6.6e-12  Score=127.56  Aligned_cols=111  Identities=18%  Similarity=0.321  Sum_probs=95.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ..++|++|++|+|||..+|+.+.|+-.+|.|+|+++.|..+|+.     |..+.++-..||+.|+.+++..+     .++
T Consensus         2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~-----N~h~~L~k~~~I~~lt~kefd~l-----~~~   71 (338)
T KOG0919|consen    2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAH-----NYHSNLVKTRNIQSLTVKEFDKL-----QAN   71 (338)
T ss_pred             CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhc-----CcccchhhccccceeeHhhhhhc-----ccc
Confidence            35899999999999999999999999999999999999999965     33456677889999999888765     789


Q ss_pred             EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634          583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  635 (637)
Q Consensus       583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~  635 (637)
                      ++...||||+|...            |.++.+.|+|+..|.+.+.+|-+++..
T Consensus        72 m~lMSPpCQPfTRi------------G~q~D~~D~Rs~aflhil~~lP~~q~L  112 (338)
T KOG0919|consen   72 MLLMSPPCQPFTRI------------GLQRDTEDKRSDAFLHILGLLPECQEL  112 (338)
T ss_pred             eEeeCCCCCchhhh------------cccccccCchhHHHHHHHhhhhhhhhh
Confidence            99999999999953            234458899999999999999888653

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=99.20  E-value=8.8e-12  Score=128.84  Aligned_cols=157  Identities=13%  Similarity=0.168  Sum_probs=110.7

Q ss_pred             CCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhccccccc-c---cCCCCCCC--CCCCCCC
Q 006634          308 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-H---NLPTTNRF--HIPPEPP  372 (637)
Q Consensus       308 ~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~-h---NLP~~~R~--~~~p~~p  372 (637)
                      .+|++|++|||..+-.    ..+..|.+.|    |.+.+.++|+..| .|+.|+|.|+ .   .++...-.  |-.+.++
T Consensus       102 ~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~~GvPQ~R~R~~~ia~~~~~~~~~~~~~p~~~~~~  181 (275)
T cd00315         102 KKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKDLILNFFSPFPKPSEKK  181 (275)
T ss_pred             cCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEEEEHHHcCCCCCCcEEEEEEEeCCCCccccccCCCCCCCC
Confidence            4899999999999865    4566776666    6789999999999 7889999995 2   22222111  1122346


Q ss_pred             CccccccCCCCCCCCCcCcccccceecccCcchhHHHHHHHHHHhhhcCCCchhhhHHHHHhhcccceeeecCccccCCC
Q 006634          373 MTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVD  452 (637)
Q Consensus       373 ~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple  452 (637)
                      .|+.|+|     ++..|+.  -..|+++....   ...          ...+.            ..-+|..+...+.|+
T Consensus       182 ~t~~d~l-----~~~~~~~--~~~ti~~~~~~---~~~----------~~~~~------------~~~~~~~~~~~R~lT  229 (275)
T cd00315         182 KTLKDIL-----RIRDPDE--PSPTLTASYGK---GTG----------SVHPT------------APDMIGKESNIRRLT  229 (275)
T ss_pred             CcHHHHH-----hhhcCCC--CccceecCCCC---Ccc----------ccccC------------cccccccCCCCCCCC
Confidence            8999999     5566776  45677665421   001          00000            001145677899999


Q ss_pred             hhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccc
Q 006634          453 PEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  497 (637)
Q Consensus       453 ~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvL  497 (637)
                      +.|+.||+|||++|+..++ +.+.+++.+||+..+..++++...+
T Consensus       230 ~rE~arlqgFPd~f~f~g~-~~~~~~~qiGNAVp~~~~~~I~~~i  273 (275)
T cd00315         230 PRECARLQGFPDDFEFPGK-SVTQAYRQIGNSVPVPVAEAIAKAI  273 (275)
T ss_pred             HHHHHHHcCCCCCcEEcCC-CHHHHHHhhcCCcCHHHHHHHHHHH
Confidence            9999999999999998644 8999999999999998887766443

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PRK10458 DNA cytosine methylase; Provisional

Probab=98.54  E-value=5.7e-08  Score=108.00  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=48.5

Q ss_pred             CccccCCChhhHHHHhcC--CCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccC
Q 006634          445 AYKLGPVDPEHIELILGY--PSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  501 (637)
Q Consensus       445 ~~~~~ple~~E~E~i~Gf--P~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f  501 (637)
                      .++++.|+|-|+-||+||  |..++....+|.++.||.+|||..|++++.++..|+.+.
T Consensus       398 ~~~~RrLTprE~aRLqGF~~pd~~~F~~~vSdtq~Ykq~GNSV~Vpvv~aIa~~L~~~~  456 (467)
T PRK10458        398 QHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLLEPKI  456 (467)
T ss_pred             cCCcccCCHHHHHHhCCCCCCccccccCCCCHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            357899999999999999  555665568999999999999999999998887776643

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=98.39  E-value=9.5e-08  Score=97.83  Aligned_cols=55  Identities=11%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             eecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcccc
Q 006634          442 WVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  498 (637)
Q Consensus       442 W~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK  498 (637)
                      +..+.+.+.|++.|+.||+|||++|..  ..+.+++++.+||+..+....++...|+
T Consensus       280 ~~hp~~~R~LT~rE~aRLqgFPd~~~f--~g~~~~~~~qiGNAVpp~v~~~I~~~i~  334 (335)
T PF00145_consen  280 FIHPEQNRRLTPREAARLQGFPDDFKF--PGSKTQQYKQIGNAVPPPVAEAIAKAIK  334 (335)
T ss_dssp             EBTTSSSCB-BHHHHHHHTTSSTTS-S---SSHHHHHHHHHCS--HHHHHHHHHHHH
T ss_pred             ccCCCCCCcCcHHHHHHhCCCCCceEc--cCCHHHHhceECCCcCHHHHHHHHHHhh
Confidence            355789999999999999999999988  4556699999999998888777765543

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.82  E-value=5.6e-05  Score=66.73  Aligned_cols=83  Identities=17%  Similarity=0.184  Sum_probs=59.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      |.+|||+|||.|-+.+.+.+.| . ..++++|+|+.+....+.++...... ...++.+|++++.. .     ...+.+|
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~-~-~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-----~~~~~~D   72 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG-A-ARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-P-----LPDGKFD   72 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC-T-CEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-T-----CTTT-EE
T ss_pred             CCEEEEcCcchHHHHHHHHHHC-C-CeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-h-----ccCceeE
Confidence            4689999999999999999999 2 45789999999999998877654321 22355677765531 0     1236899


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|++-||.-+..
T Consensus        73 ~Iv~npP~~~~~   84 (117)
T PF13659_consen   73 LIVTNPPYGPRS   84 (117)
T ss_dssp             EEEE--STTSBT
T ss_pred             EEEECCCCcccc
Confidence            999999986543

...

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=97.81  E-value=4.6e-06  Score=88.22  Aligned_cols=178  Identities=14%  Similarity=0.184  Sum_probs=94.6

Q ss_pred             cCCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhcccccccccCC---CCCCCCCCCC----
Q 006634          307 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP---TTNRFHIPPE----  370 (637)
Q Consensus       307 ~~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~hNLP---~~~R~~~~p~----  370 (637)
                      ..+|.||++|||..+-.    ..+..|-+-|    |.+...++||..| .|++|+|.|+--.-   ....+ ..|.    
T Consensus        98 ~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~a~dyGvPQ~R~R~f~ia~r~~~~~~~~-~~p~~~~~  176 (315)
T TIGR00675        98 EKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLNAKDFGVPQNRERIYIVGFRDFDDKLNF-EFPKPIYV  176 (315)
T ss_pred             hcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEcHHHCCCCCCccEEEEEEEeCCCcCcCC-CCCCCccc
Confidence            45899999999987643    3566665555    6778899999999 99999999875322   11111 2232    


Q ss_pred             -CCCccccccCCCC----CCCCCcCcccccceeccc-------------CcchhHHHHHHHHHHhhhcCCCchhhhHHHH
Q 006634          371 -PPMTIQDAIPHTK----KWWPSWDTRKHLSCINSG-------------TSGISQLCERFEKLLRDSRGVLSSQQQRDIL  432 (637)
Q Consensus       371 -~p~ti~e~lp~~~----~~wp~wd~r~k~~ci~t~-------------~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl  432 (637)
                       ...||.|++....    .|+++-...+.+..+...             .+.........+++..+....  ......+.
T Consensus       177 ~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~t~~  254 (315)
T TIGR00675       177 AKKKRIGDLLDLSVDLEEKYYLSEEKKNGLLLLLENMRKKEGTGEQIGSFYNRESKSSIIRTLSARGYTF--VKGGKSVL  254 (315)
T ss_pred             ccccchHHhcccccCcCCcEEeCHHHHHHHHHHhhccccccccccccceeeccCCccceeeeeecccccc--CCCCccee
Confidence             3567877774321    111110000000000000             000000000000111100000  00000000


Q ss_pred             HhhcccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchh
Q 006634          433 HRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLG  491 (637)
Q Consensus       433 ~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~  491 (637)
                      ..+. .+.. .-+.+.+.|++.|.-||+|||++|..  ..+.+..++.+||+.-+....
T Consensus       255 ~~~~-~~~~-~hp~~~R~lT~RE~aRLQ~FPd~f~f--~~s~~~~~~qiGNAVPp~la~  309 (315)
T TIGR00675       255 IVPH-KSTV-VHPGRIRRLTPRECARLQGFPDDFKF--PVSDSQLYKQAGNAVVVPVIE  309 (315)
T ss_pred             eccc-ccee-ccCCceeeCCHHHHHHHcCCCcccEe--CCCHHHHHhhhCCcccHHHHH
Confidence            0011 0111 23567799999999999999999976  579999999999998665443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.45  E-value=5.6e-05  Score=80.43  Aligned_cols=177  Identities=14%  Similarity=0.139  Sum_probs=98.0

Q ss_pred             cCCCCccccccccccchh---hHHHhhhhhc----cCCceeecccc-cchhcccccccc-----cCCCCCCCCCCCC---
Q 006634          307 VAQPPYFFYGNVVDVSID---CWVKMSHFLY----SLEPEFVNSQY-FSALSRREGYLH-----NLPTTNRFHIPPE---  370 (637)
Q Consensus       307 ~~~ppfF~yeNV~~~~~~---~w~~IsrfL~----~i~Pe~vds~~-fsaa~R~Rgy~h-----NLP~~~R~~~~p~---  370 (637)
                      ..+|.||++|||..|-..   .|+.|.+-|.    .+...++||+. --|++|.|.|+.     |+-...--. .+.   
T Consensus       106 ~~~P~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY~~~~~ilna~dyGvPQ~ReRvfiig~~~~~~~~~~~~~-~~~~~~  184 (328)
T COG0270         106 QLRPKFFVLENVKGLLSSKGQTFDEIKKELEELGYGVEFNILNAADYGVPQSRERVFIVGFRRDNIDLDPNVL-PPLPLG  184 (328)
T ss_pred             hhCCCEEEEecCchHHhcCchHHHHHHHHHHHcCCcchHheeeHHhcCCCCCccEEEEEEecCcccccccccc-Cccccc
Confidence            456799999999999886   8888888774    45566777665 578999999999     777664311 111   


Q ss_pred             CCCcccccc-----CCCCCCCC-CcCcccccceecccCcchhHHHHHHHHH--------H---------hhhc-CCCchh
Q 006634          371 PPMTIQDAI-----PHTKKWWP-SWDTRKHLSCINSGTSGISQLCERFEKL--------L---------RDSR-GVLSSQ  426 (637)
Q Consensus       371 ~p~ti~e~l-----p~~~~~wp-~wd~r~k~~ci~t~~~~~~~l~~ri~~~--------~---------~~~~-~~~~~~  426 (637)
                      ...++-+++     +.+..-|. .+...-..+-+...      ...++...        .         .+.. ..+...
T Consensus       185 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~t  258 (328)
T COG0270         185 RKKTLKEALKNNDLPETDELYLSRDLRNHEAKSLPKN------KGERLPSLRWGEALTLSRRYKGKGSYIRLHPDKPAPT  258 (328)
T ss_pred             cccchhhhhhhccCcchhhhhccccccccccccCchh------hhccccccccccccccccccCCCceeEeCCCCCCCce
Confidence            022222211     11111000 00000000000000      00000000        0         0000 000000


Q ss_pred             hhHHHHHhhcccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634          427 QQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  499 (637)
Q Consensus       427 ~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~  499 (637)
                      +    .   ...+-.=+-+..-+.|++.|+-+|+|||+.|...+  +.+.+++.+||+..+....++..-+..
T Consensus       259 ~----~---~~~~~~~~h~~~~r~lt~rE~arlq~fPd~~~~~g--s~~~~~~qiGnsVp~~l~~~ia~~i~~  322 (328)
T COG0270         259 V----R---GGGNERFIHPLEDRELTVREAARLQGFPDDFVFPG--SKTDQYRQIGNSVPPLLAEAIAKAILK  322 (328)
T ss_pred             e----e---cCCCcccCCCCcCCCCCHHHHHHhcCCCCceEEec--cchhhhhhccCcCCHHHHHHHHHHHHH
Confidence            0    0   01111112355667799999999999999999975  999999999999988877776655443

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.39  E-value=0.00023  Score=70.22  Aligned_cols=82  Identities=22%  Similarity=0.261  Sum_probs=49.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||||||.|.+.+=.-.-|.  +-|+.||.++.++++++.+....+... ..++..|...    .+..+......|
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRGA--~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~----~l~~~~~~~~~f  115 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRGA--KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFK----FLLKLAKKGEKF  115 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT---SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHH----HHHHHHHCTS-E
T ss_pred             CCCeEEEcCCccCccHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHH----HHHhhcccCCCc
Confidence            578899999999988764445576  468899999999999999887654221 1122333321    122222234689


Q ss_pred             cEEEEcCCC
Q 006634          582 DFVICQNSV  590 (637)
Q Consensus       582 DLVIGGpPC  590 (637)
                      |||.--||=
T Consensus       116 DiIflDPPY  124 (183)
T PF03602_consen  116 DIIFLDPPY  124 (183)
T ss_dssp             EEEEE--ST
T ss_pred             eEEEECCCc
Confidence            999999983

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.24  E-value=0.00074  Score=66.75  Aligned_cols=83  Identities=17%  Similarity=0.064  Sum_probs=56.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||||||.|.+.+.+-..|..  .|++||+++.+.++.+.++...+... ..++.+|+.+.    +..+......+
T Consensus        49 ~g~~vLDLfaGsG~lglea~srga~--~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~----l~~~~~~~~~~  122 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRGAK--VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRA----LKFLAKKPTFD  122 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHH----HHHhhccCCCc
Confidence            3568999999999999999888873  58999999999999998876543211 12344555321    11111111237


Q ss_pred             cEEEEcCCCC
Q 006634          582 DFVICQNSVP  591 (637)
Q Consensus       582 DLVIGGpPCQ  591 (637)
                      |+|+--||=.
T Consensus       123 dvv~~DPPy~  132 (189)
T TIGR00095       123 NVIYLDPPFF  132 (189)
T ss_pred             eEEEECcCCC
Confidence            8998888853

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=97.17  E-value=0.00059  Score=73.69  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=70.0

Q ss_pred             hcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-Cccccccc
Q 006634          485 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDI  563 (637)
Q Consensus       485 fqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI  563 (637)
                      |+.-...-+..+++..++ |-+|+|+|||+|-+++-....|-. + |+|+|||+.|.+-++.+-.-+.-.+ ...+++|.
T Consensus       171 Fsprl~~ER~Rva~~v~~-GE~V~DmFAGVGpfsi~~Ak~g~~-~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~  247 (341)
T COG2520         171 FSPRLSTERARVAELVKE-GETVLDMFAGVGPFSIPIAKKGRP-K-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDA  247 (341)
T ss_pred             ECCCchHHHHHHHhhhcC-CCEEEEccCCcccchhhhhhcCCc-e-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccH
Confidence            555555555666666555 899999999999999999999953 4 8999999999999988764322222 12467887


Q ss_pred             cccChhhHHHhhhccCCccEEEEcCCC
Q 006634          564 QALTTKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       564 ~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      +++-.+        .+.+|=||-|-|=
T Consensus       248 rev~~~--------~~~aDrIim~~p~  266 (341)
T COG2520         248 REVAPE--------LGVADRIIMGLPK  266 (341)
T ss_pred             HHhhhc--------cccCCEEEeCCCC
Confidence            766542        2678999999884

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.14  E-value=0.00094  Score=67.13  Aligned_cols=80  Identities=23%  Similarity=0.285  Sum_probs=49.8

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +..+-+|+|+|||+|.+++-+.+.+ +.+.|+|+|+++.|.+-++.+-...+-.+.+ +..+|.+++..         .+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~-~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---------~~  168 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHG-KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---------EG  168 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT--SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG------------TT
T ss_pred             CCcceEEEEccCCccHHHHHHhhhc-CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC---------cc
Confidence            4567899999999999999888743 2356899999999999998876543333322 35677766543         24


Q ss_pred             CccEEEEcCCC
Q 006634          580 SIDFVICQNSV  590 (637)
Q Consensus       580 ~~DLVIGGpPC  590 (637)
                      .+|-|+.+.|=
T Consensus       169 ~~drvim~lp~  179 (200)
T PF02475_consen  169 KFDRVIMNLPE  179 (200)
T ss_dssp             -EEEEEE--TS
T ss_pred             ccCEEEECChH
Confidence            68999988883

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.11  E-value=0.00092  Score=68.81  Aligned_cols=82  Identities=13%  Similarity=0.138  Sum_probs=57.5

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      ..+||||+||.|.+.+.+.+..-. ..++++|+++.+.+..+.+....+   ..+..+|+.+.-...      ..+.||+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~------~~~~fDl  156 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTA------LRGRVDI  156 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchh------cCCCEeE
Confidence            458999999999999988754211 246899999999998887764322   234567765422111      1246999


Q ss_pred             EEEcCCCCCcCc
Q 006634          584 VICQNSVPQIPN  595 (637)
Q Consensus       584 VIGGpPCQ~FS~  595 (637)
                      |+.-|||.+.+.
T Consensus       157 Vv~NPPy~~~~~  168 (251)
T TIGR03704       157 LAANAPYVPTDA  168 (251)
T ss_pred             EEECCCCCCchh
Confidence            999999998763

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=97.05  E-value=0.0014  Score=72.02  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=58.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||||||+||+++.....|.  .-|++||+++.+....+.++...+..  ...++.+|+.++    +..+....+.
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga--~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~----l~~~~~~~~~  293 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL----LRTYRDRGEK  293 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH----HHHHHhcCCC
Confidence            467899999999999887666664  35789999999999998887654321  122456777543    2222222347


Q ss_pred             ccEEEEcCCC
Q 006634          581 IDFVICQNSV  590 (637)
Q Consensus       581 ~DLVIGGpPC  590 (637)
                      ||+||--||+
T Consensus       294 fDlVilDPP~  303 (396)
T PRK15128        294 FDVIVMDPPK  303 (396)
T ss_pred             CCEEEECCCC
Confidence            9999999997

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=97.05  E-value=0.0017  Score=65.01  Aligned_cols=77  Identities=12%  Similarity=0.085  Sum_probs=52.4

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+|||||||.|.+.+.+-..|.  .-|++||+++.+.+..+.+....+.....++.+|+.+.    +.   ...+.+|+
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~a--~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~----l~---~~~~~fDl  124 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRYA--AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSF----LA---QPGTPHNV  124 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHH----Hh---hcCCCceE
Confidence            46899999999999985433343  35789999999999999887654322222345555321    11   11236999


Q ss_pred             EEEcCC
Q 006634          584 VICQNS  589 (637)
Q Consensus       584 VIGGpP  589 (637)
                      |+--||
T Consensus       125 V~~DPP  130 (199)
T PRK10909        125 VFVDPP  130 (199)
T ss_pred             EEECCC
Confidence            999999

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=96.96  E-value=0.001  Score=65.11  Aligned_cols=81  Identities=22%  Similarity=0.213  Sum_probs=48.0

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC-ccE
Q 006634          506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS-IDF  583 (637)
Q Consensus       506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~-~DL  583 (637)
                      +|||+|||+||=++.|.+.+   ..|+|||+|+...+..+++-.-.+. ....++.+|..++-..      .+... +|+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~------~~~~~~~D~   72 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR------LKSNKIFDV   72 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG------B------SE
T ss_pred             EEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh------ccccccccE
Confidence            58999999999999999985   4589999999998888876443210 0112344555442211      01122 799


Q ss_pred             EEEcCCCCCcCc
Q 006634          584 VICQNSVPQIPN  595 (637)
Q Consensus       584 VIGGpPCQ~FS~  595 (637)
                      |...||=-+.+.
T Consensus        73 vFlSPPWGGp~Y   84 (163)
T PF09445_consen   73 VFLSPPWGGPSY   84 (163)
T ss_dssp             EEE---BSSGGG
T ss_pred             EEECCCCCCccc
Confidence            999999887775

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PHA03412 putative methyltransferase; Provisional

Probab=96.87  E-value=0.0016  Score=67.38  Aligned_cols=122  Identities=16%  Similarity=0.169  Sum_probs=80.1

Q ss_pred             cCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcC--C
Q 006634          449 GPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLG--I  526 (637)
Q Consensus       449 ~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aG--i  526 (637)
                      ++|+-+|.|.++   .||+-. .   .--.+.+|..|....+++++... . . .+.+|||+.||.|.+.+.+-+.-  -
T Consensus         5 ~~~~~~~~~f~~---~n~~~~-~---~~~~~~~GqFfTP~~iAr~~~i~-~-~-~~grVLDlG~GSG~Lalala~~~~~~   74 (241)
T PHA03412          5 KALTYEEKLFII---ENFHEG-A---FTNNSELGAFFTPIGLARDFTID-A-C-TSGSVVDLCAGIGGLSFAMVHMMMYA   74 (241)
T ss_pred             ccccHHHHHHHH---hhcccc-c---ccccccCCccCCCHHHHHHHHHh-c-c-CCCEEEEccChHHHHHHHHHHhcccC
Confidence            456677777766   466662 1   12234557788888888776432 2 2 35799999999999999876531  1


Q ss_pred             ceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCCCcC
Q 006634          527 KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  594 (637)
Q Consensus       527 ~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  594 (637)
                      +-..+.+||||+.+.+..+.+.     ....++..|+.....         .+.||+||+=||=-...
T Consensus        75 ~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~---------~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         75 KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF---------DTLFDMAISNPPFGKIK  128 (241)
T ss_pred             CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc---------cCCccEEEECCCCCCcc
Confidence            1125789999999988776532     223355677764321         24799999999965543

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=96.79  E-value=0.0032  Score=58.91  Aligned_cols=84  Identities=20%  Similarity=0.270  Sum_probs=62.4

Q ss_pred             CCCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+||||-||.|-+...|. +++-.. -++++|+++.+.+..+......+.....++.+||.++... ++      +.|
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~-~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~~------~~~   74 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGA-KIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-LE------EKF   74 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTS-EEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-SS------TTE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCC-EEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-cC------CCe
Confidence            46899999999999999999 565433 3789999999999888766544333344677999886643 32      479


Q ss_pred             cEEEEcCCCCCcC
Q 006634          582 DFVICQNSVPQIP  594 (637)
Q Consensus       582 DLVIGGpPCQ~FS  594 (637)
                      |+|+...++..+.
T Consensus        75 D~I~~~~~l~~~~   87 (152)
T PF13847_consen   75 DIIISNGVLHHFP   87 (152)
T ss_dssp             EEEEEESTGGGTS
T ss_pred             eEEEEcCchhhcc
Confidence            9999998885444

...

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=96.66  E-value=0.01  Score=63.12  Aligned_cols=82  Identities=20%  Similarity=0.165  Sum_probs=58.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+|||.|++.+.+...|.   .++++|+++...+..+.+....+.....+..+|+.++...        .+.+
T Consensus       181 ~~g~~vLDp~cGtG~~lieaa~~~~---~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~--------~~~~  249 (329)
T TIGR01177       181 TEGDRVLDPFCGTGGFLIEAGLMGA---KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS--------SESV  249 (329)
T ss_pred             CCcCEEEECCCCCCHHHHHHHHhCC---eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc--------cCCC
Confidence            3467899999999999877777775   3689999998877666665443322223456777765421        2479


Q ss_pred             cEEEEcCCCCCcC
Q 006634          582 DFVICQNSVPQIP  594 (637)
Q Consensus       582 DLVIGGpPCQ~FS  594 (637)
                      |+|+.-|||...+
T Consensus       250 D~Iv~dPPyg~~~  262 (329)
T TIGR01177       250 DAIATDPPYGRST  262 (329)
T ss_pred             CEEEECCCCcCcc
Confidence            9999999986544

This family is found exclusively in the Archaea.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=96.62  E-value=0.0046  Score=63.95  Aligned_cols=85  Identities=13%  Similarity=0.099  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.||.++.+.++--+--.|+++|+++...+.++.+....+.....+...|.+.+..        ..+.||
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  142 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGA--------AVPKFD  142 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhh--------hccCCC
Confidence            357899999999999988765311111478999999999888877654432211234455543321        124699


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      +|+--+||.+...
T Consensus       143 ~Vl~D~Pcsg~G~  155 (264)
T TIGR00446       143 AILLDAPCSGEGV  155 (264)
T ss_pred             EEEEcCCCCCCcc
Confidence            9999999986654

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=96.52  E-value=0.0033  Score=68.28  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=54.2

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+|||||||+|.+++.+...|-   .|++||+++.+.+..+.+....+-....+..+|+.++...       ..+.+|+
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~---~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------~~~~~D~  303 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDT---QLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------QMSAPEL  303 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCC---eEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------cCCCCCE
Confidence            35899999999999998887763   4789999999999998876543221122455666443211       1135899


Q ss_pred             EEEcCC
Q 006634          584 VICQNS  589 (637)
Q Consensus       584 VIGGpP  589 (637)
                      |+-=||
T Consensus       304 vi~DPP  309 (374)
T TIGR02085       304 VLVNPP  309 (374)
T ss_pred             EEECCC
Confidence            999998

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=96.49  E-value=0.0049  Score=65.21  Aligned_cols=81  Identities=22%  Similarity=0.214  Sum_probs=57.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+|||||||.|.+++.|.+.|-   -|+++|+++.+.+..+.+....+-....++.+|+.++...       ..+.+|+
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~---~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~-------~~~~~D~  243 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGM---QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA-------QGEVPDL  243 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh-------cCCCCeE
Confidence            46899999999999999998774   4789999999998887765433221122455666543210       1236899


Q ss_pred             EEEcCCCCCcC
Q 006634          584 VICQNSVPQIP  594 (637)
Q Consensus       584 VIGGpPCQ~FS  594 (637)
                      |+--||+.+..
T Consensus       244 Vv~dPPr~G~~  254 (315)
T PRK03522        244 VLVNPPRRGIG  254 (315)
T ss_pred             EEECCCCCCcc
Confidence            99999987653

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=96.48  E-value=0.0082  Score=57.87  Aligned_cols=77  Identities=21%  Similarity=0.250  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ..-++|||-||+|-+++.+.+.+-..+ ++++|+++.+....+.++...+-....+...|+.+--         ..+.||
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~-v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~---------~~~~fD  100 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAK-VTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL---------PDGKFD  100 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEE-EEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC---------CTTCEE
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCE-EEEEcCCHHHHHHHHHHHHhcCccccccccccccccc---------ccccee
Confidence            457899999999999999999886544 8899999999999988876543221223445543211         135899


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +|+..||
T Consensus       101 ~Iv~NPP  107 (170)
T PF05175_consen  101 LIVSNPP  107 (170)
T ss_dssp             EEEE---
T ss_pred             EEEEccc
Confidence            9999999

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]

Probab=96.46  E-value=0.0022  Score=66.49  Aligned_cols=52  Identities=15%  Similarity=0.365  Sum_probs=48.5

Q ss_pred             ccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccc
Q 006634          446 YKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  497 (637)
Q Consensus       446 ~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvL  497 (637)
                      =+|+.++|.|+-|++|||.++-.-.+++...||++||||.+|.+++++++.|
T Consensus       285 l~LRYFTprEvArLmgFPe~fefp~~~T~kq~YRLLGNSiNVkVV~~LIklL  336 (338)
T KOG0919|consen  285 LRLRYFTPREVARLMGFPENFEFPPETTNKQKYRLLGNSINVKVVGELIKLL  336 (338)
T ss_pred             HHhhccCHHHHHHHcCCCcccCCCcchhHHHHHHHhcCcccceeHHHHHHHh
Confidence            4789999999999999999999888999999999999999999999988765

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=96.40  E-value=0.012  Score=60.01  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=56.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+..........+...|+.+..         ..+.||
T Consensus       108 ~~~~vLDiG~GsG~~~~~la~~~~~-~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~---------~~~~fD  177 (275)
T PRK09328        108 EPLRVLDLGTGSGAIALALAKERPD-AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL---------PGGRFD  177 (275)
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC---------CCCcee
Confidence            4578999999999999998877522 357899999999888887654111112223455552211         125799


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+.-||+-+.+
T Consensus       178 ~Iv~npPy~~~~  189 (275)
T PRK09328        178 LIVSNPPYIPEA  189 (275)
T ss_pred             EEEECCCcCCcc
Confidence            999999997765

>PHA03411 putative methyltransferase; Provisional

Probab=96.35  E-value=0.0063  Score=64.24  Aligned_cols=96  Identities=17%  Similarity=0.221  Sum_probs=65.4

Q ss_pred             hhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccc
Q 006634          482 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIE  561 (637)
Q Consensus       482 gnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~  561 (637)
                      |-.|..+.+.++| ++...  .+-+||||+||+|.+.+.+....-. ..+++||+++.+.+..+..+     +...++.+
T Consensus        46 G~FfTP~~i~~~f-~~~~~--~~grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~-----~~v~~v~~  116 (279)
T PHA03411         46 GAFFTPEGLAWDF-TIDAH--CTGKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLL-----PEAEWITS  116 (279)
T ss_pred             eeEcCCHHHHHHH-Hhccc--cCCeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhC-----cCCEEEEC
Confidence            6667777888887 34332  2358999999999998777543211 24789999999988776532     22335567


Q ss_pred             cccccChhhHHHhhhccCCccEEEEcCCCCCcCc
Q 006634          562 DIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  595 (637)
Q Consensus       562 DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  595 (637)
                      |+.++..         .+.||+|++-||-.....
T Consensus       117 D~~e~~~---------~~kFDlIIsNPPF~~l~~  141 (279)
T PHA03411        117 DVFEFES---------NEKFDVVISNPPFGKINT  141 (279)
T ss_pred             chhhhcc---------cCCCcEEEEcCCccccCc
Confidence            7765421         246999999999877543

>smart00165 UBA Ubiquitin associated domain

Probab=96.34  E-value=0.0065  Score=44.58  Aligned_cols=36  Identities=31%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  115 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~  115 (637)
                      .+++..|+.|||+++.+..|++.||-+  ++.-+++|+
T Consensus         2 ~~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L~   37 (37)
T smart00165        2 EEKIDQLLEMGFSREEALKALRAANGN--VERAAEYLL   37 (37)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHC
Confidence            357889999999999999999999986  577777764

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=96.21  E-value=0.013  Score=64.40  Aligned_cols=84  Identities=12%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||||||+|.+++.|.+.+-   .|+++|+++.+.+..+.+....+.....++.+|+.++    +..+....+.+|
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~---~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~----l~~~~~~~~~~D  364 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAK---SVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETV----LPKQPWAGQIPD  364 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCC---EEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHH----HHHHHhcCCCCC
Confidence            346899999999999999988763   4789999999998888776533222223456666542    111111124589


Q ss_pred             EEEEcCCCCCc
Q 006634          583 FVICQNSVPQI  593 (637)
Q Consensus       583 LVIGGpPCQ~F  593 (637)
                      +|+--||.-+.
T Consensus       365 ~vi~dPPr~G~  375 (431)
T TIGR00479       365 VLLLDPPRKGC  375 (431)
T ss_pred             EEEECcCCCCC
Confidence            99999998663

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=96.21  E-value=0.014  Score=58.43  Aligned_cols=92  Identities=20%  Similarity=0.276  Sum_probs=57.7

Q ss_pred             hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhH
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKF  571 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~I  571 (637)
                      +|..|-+.+-.+-++||||||.|++.+=.-.-|.  ..++.||.|..+..+++.|-...+..+ ..+...|..    .-+
T Consensus        33 lFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA--~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~----~~L  106 (187)
T COG0742          33 LFNILAPDEIEGARVLDLFAGSGALGLEALSRGA--ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDAL----RAL  106 (187)
T ss_pred             HHHhccccccCCCEEEEecCCccHhHHHHHhCCC--ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHH----HHH
Confidence            3444555233578899999999987543334455  458899999999999998765443112 122233332    111


Q ss_pred             HHhhhccCCccEEEEcCCCC
Q 006634          572 ESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       572 e~l~~~~g~~DLVIGGpPCQ  591 (637)
                      .. ....+.||+|.==||=.
T Consensus       107 ~~-~~~~~~FDlVflDPPy~  125 (187)
T COG0742         107 KQ-LGTREPFDLVFLDPPYA  125 (187)
T ss_pred             Hh-cCCCCcccEEEeCCCCc
Confidence            11 12223599999999976

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=96.19  E-value=0.0077  Score=65.27  Aligned_cols=82  Identities=13%  Similarity=0.140  Sum_probs=54.0

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh----c---
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH----K---  577 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~----~---  577 (637)
                      -+|||||||.|++++++.+..   +-|++||+++.+.+..+.+-...+-....++.+|+.++-.+ +.....    .   
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~-~~~~~~~~~~~~~~  283 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQA-MNGVREFNRLKGID  283 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHH-Hhhccccccccccc
Confidence            469999999999999988764   35899999999999888765433211222456777553211 110000    0   


Q ss_pred             --cCCccEEEEcCCC
Q 006634          578 --LGSIDFVICQNSV  590 (637)
Q Consensus       578 --~g~~DLVIGGpPC  590 (637)
                        ...+|+|+=-||=
T Consensus       284 ~~~~~~D~v~lDPPR  298 (362)
T PRK05031        284 LKSYNFSTIFVDPPR  298 (362)
T ss_pred             ccCCCCCEEEECCCC
Confidence              1148999999993

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=96.19  E-value=0.017  Score=55.64  Aligned_cols=77  Identities=14%  Similarity=0.168  Sum_probs=56.7

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+||||.||.|.++..+.+.|.   .++++|+++...+..+.+.... +....+...|+.+..          .+.||+
T Consensus        20 ~~~vLdlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~----------~~~fD~   85 (179)
T TIGR00537        20 PDDVLEIGAGTGLVAIRLKGKGK---CILTTDINPFAVKELRENAKLN-NVGLDVVMTDLFKGV----------RGKFDV   85 (179)
T ss_pred             CCeEEEeCCChhHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHc-CCceEEEEccccccc----------CCcccE
Confidence            35799999999999999999885   4789999999988887765432 222223445654321          247999


Q ss_pred             EEEcCCCCCcC
Q 006634          584 VICQNSVPQIP  594 (637)
Q Consensus       584 VIGGpPCQ~FS  594 (637)
                      |+..+|+....
T Consensus        86 Vi~n~p~~~~~   96 (179)
T TIGR00537        86 ILFNPPYLPLE   96 (179)
T ss_pred             EEECCCCCCCc
Confidence            99999997665

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=96.18  E-value=0.012  Score=56.41  Aligned_cols=76  Identities=17%  Similarity=0.048  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-++||++||.|.++..+.+.+-   .++++|+|+.+...++.++...  ....++.+|+.++...        ...+|
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~~~---~v~~vE~~~~~~~~~~~~~~~~--~~v~ii~~D~~~~~~~--------~~~~d   79 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLERAA---RVTAIEIDPRLAPRLREKFAAA--DNLTVIHGDALKFDLP--------KLQPY   79 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhcCC---eEEEEECCHHHHHHHHHHhccC--CCEEEEECchhcCCcc--------ccCCC
Confidence            346899999999999999888753   4789999999999888766431  1223556777766421        12589


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+|.+|=+
T Consensus        80 ~vi~n~Py~   88 (169)
T smart00650       80 KVVGNLPYN   88 (169)
T ss_pred             EEEECCCcc
Confidence            999998854

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=96.17  E-value=0.011  Score=65.69  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=58.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.||.++.+.++.-.-..|+++|+++...+..+.+....+.....+..+|..++..         .+.||
T Consensus       250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~---------~~~fD  320 (445)
T PRK14904        250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSP---------EEQPD  320 (445)
T ss_pred             CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccccc---------CCCCC
Confidence            357899999999999876654210112478999999999888877654432212234566655431         24699


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      +|+-.+||.+...
T Consensus       321 ~Vl~D~Pcsg~g~  333 (445)
T PRK14904        321 AILLDAPCTGTGV  333 (445)
T ss_pred             EEEEcCCCCCcch
Confidence            9999999988875

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.14  E-value=0.014  Score=68.64  Aligned_cols=83  Identities=18%  Similarity=0.195  Sum_probs=59.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||||||.||+++.+.+.|..  .|++||+++.+.+..+.+...++..  ...++.+|+.+.    +..   ..+.
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~--~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~----l~~---~~~~  608 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAK--STTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW----LKE---AREQ  608 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCC--EEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH----HHH---cCCC
Confidence            3568999999999999999998863  5899999999999998887543321  122345665432    111   1257


Q ss_pred             ccEEEEcCCCCCcC
Q 006634          581 IDFVICQNSVPQIP  594 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS  594 (637)
                      ||+||-=||+-.-+
T Consensus       609 fDlIilDPP~f~~~  622 (702)
T PRK11783        609 FDLIFIDPPTFSNS  622 (702)
T ss_pred             cCEEEECCCCCCCC
Confidence            99999999975543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=96.13  E-value=0.015  Score=64.31  Aligned_cols=84  Identities=12%  Similarity=0.177  Sum_probs=60.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.||.+..+.+.+-. ..|+++|+++......+.+....+.. ..++.+|+.++..     . ...+.||
T Consensus       244 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~-----~-~~~~~fD  315 (427)
T PRK10901        244 NGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRLGLK-ATVIVGDARDPAQ-----W-WDGQPFD  315 (427)
T ss_pred             CCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEcCcccchh-----h-cccCCCC
Confidence            3578999999999999888876532 35889999999999998877654322 2345677765422     0 0124699


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+-.+||.+..
T Consensus       316 ~Vl~D~Pcs~~G  327 (427)
T PRK10901        316 RILLDAPCSATG  327 (427)
T ss_pred             EEEECCCCCccc
Confidence            999999998754

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=96.07  E-value=0.012  Score=43.59  Aligned_cols=36  Identities=31%  Similarity=0.351  Sum_probs=29.5

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI  114 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I  114 (637)
                      ..+++..|+.|||+++.+..|+..||-+  ++.=+++|
T Consensus         2 ~~~~v~~L~~mGf~~~~~~~AL~~~~~n--ve~A~~~L   37 (37)
T PF00627_consen    2 DEEKVQQLMEMGFSREQAREALRACNGN--VERAVDWL   37 (37)
T ss_dssp             HHHHHHHHHHHTS-HHHHHHHHHHTTTS--HHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHhC
Confidence            3568899999999999999999999984  56777665

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=96.04  E-value=0.014  Score=64.62  Aligned_cols=85  Identities=19%  Similarity=0.214  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||||||.|.+++.|.+.+.   .++++|+++.+.+..+.+....+.....++.+|+.+...    .+....+.||
T Consensus       297 ~~~~VLDlgcGtG~~sl~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~----~~~~~~~~fD  369 (443)
T PRK13168        297 PGDRVLDLFCGLGNFTLPLARQAA---EVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFT----DQPWALGGFD  369 (443)
T ss_pred             CCCEEEEEeccCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhh----hhhhhcCCCC
Confidence            356899999999999999988763   578999999999888776543322223355677654321    1101124689


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+--||+.+..
T Consensus       370 ~Vi~dPPr~g~~  381 (443)
T PRK13168        370 KVLLDPPRAGAA  381 (443)
T ss_pred             EEEECcCCcChH
Confidence            999999987654

>cd00194 UBA Ubiquitin Associated domain

Probab=95.95  E-value=0.017  Score=42.55  Aligned_cols=36  Identities=33%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  115 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~  115 (637)
                      .+++..|+.|||+++.|..|+..|+-+  ++.-+++|+
T Consensus         2 ~~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~   37 (38)
T cd00194           2 EEKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL   37 (38)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            357889999999999999999999985  577788876

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.87  E-value=0.022  Score=57.35  Aligned_cols=72  Identities=22%  Similarity=0.291  Sum_probs=57.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|+||=||+|=+.+|..-+|-  ..|++||+|+.+..+.+.+-..  .-| ..+...||+++.           +.+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa--~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~-----------~~~  109 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGA--SRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR-----------GKF  109 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCC--cEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC-----------Ccc
Confidence            456799999999999999999996  4689999999999999986543  122 224567777655           478


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |.||--||
T Consensus       110 dtvimNPP  117 (198)
T COG2263         110 DTVIMNPP  117 (198)
T ss_pred             ceEEECCC
Confidence            99999888

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=95.85  E-value=0.019  Score=63.58  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=59.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||++||.||.++.+.++ |-. -.++++|+++...+..+.+....+.....+..+|+.++.. .+      .+.|
T Consensus       250 ~g~~VLDlgaG~G~~t~~la~~~~~~-~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~-~~------~~~f  321 (444)
T PRK14902        250 GGDTVLDACAAPGGKTTHIAELLKNT-GKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHE-KF------AEKF  321 (444)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccc-hh------cccC
Confidence            3568999999999999887664 211 2478999999998888877654432222345677765431 11      1479


Q ss_pred             cEEEEcCCCCCcCc
Q 006634          582 DFVICQNSVPQIPN  595 (637)
Q Consensus       582 DLVIGGpPCQ~FS~  595 (637)
                      |+|+-.+||.++..
T Consensus       322 D~Vl~D~Pcsg~G~  335 (444)
T PRK14902        322 DKILVDAPCSGLGV  335 (444)
T ss_pred             CEEEEcCCCCCCee
Confidence            99999999987754

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=95.69  E-value=0.027  Score=45.89  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=52.0

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006634          506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  585 (637)
Q Consensus       506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI  585 (637)
                      +++|+.||.|++...+.+.+  ...++++|+++.+....+............++..|+.+...       ...+.+|+|+
T Consensus         1 ~ildig~G~G~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALASGP--GARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP-------EADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCC--CCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc-------ccCCceEEEE
Confidence            57999999999998888733  24678999999887766532211111122234456554432       1236799999


Q ss_pred             EcCCCCCc
Q 006634          586 CQNSVPQI  593 (637)
Q Consensus       586 GGpPCQ~F  593 (637)
                      ..+||..+
T Consensus        72 ~~~~~~~~   79 (107)
T cd02440          72 SDPPLHHL   79 (107)
T ss_pred             Eccceeeh
Confidence            99998874

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK14967 putative methyltransferase; Provisional

Probab=95.62  E-value=0.023  Score=56.89  Aligned_cols=78  Identities=18%  Similarity=0.187  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.|.+.+.+.+.|.  ..++++|+++.+.+..+.+....+ ....++.+|+.+.    +     ..+.||
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~~--~~v~~vD~s~~~l~~a~~n~~~~~-~~~~~~~~d~~~~----~-----~~~~fD  103 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAGA--GSVTAVDISRRAVRSARLNALLAG-VDVDVRRGDWARA----V-----EFRPFD  103 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhC-CeeEEEECchhhh----c-----cCCCee
Confidence            356899999999999998888875  357899999998887776554322 1122344555431    1     125799


Q ss_pred             EEEEcCCCCC
Q 006634          583 FVICQNSVPQ  592 (637)
Q Consensus       583 LVIGGpPCQ~  592 (637)
                      +|+..||-..
T Consensus       104 ~Vi~npPy~~  113 (223)
T PRK14967        104 VVVSNPPYVP  113 (223)
T ss_pred             EEEECCCCCC
Confidence            9999987443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=95.58  E-value=0.027  Score=62.31  Aligned_cols=89  Identities=15%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.||.+..+.++.-.--.++++|+++...+.++.+....+.....+...|..++....    ....+.||
T Consensus       252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~----~~~~~~fD  327 (434)
T PRK14901        252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELK----PQWRGYFD  327 (434)
T ss_pred             CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhccccc----ccccccCC
Confidence            35789999999999998887652111247899999998888887665443222234456766543110    00124699


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      .|+-.+||.+...
T Consensus       328 ~Vl~DaPCSg~G~  340 (434)
T PRK14901        328 RILLDAPCSGLGT  340 (434)
T ss_pred             EEEEeCCCCcccc
Confidence            9999999988553

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=95.58  E-value=0.033  Score=59.24  Aligned_cols=80  Identities=13%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      .+|||+.||.|.+.+.+....-. ..++++|+++.+.+..+.+....+... ..++.+|+.+.    +     ..+.||+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~-~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----l-----~~~~fDl  204 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPD-AEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----L-----PGRRYDL  204 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----C-----CCCCccE
Confidence            58999999999999998776422 357899999999998888765432111 22345555321    1     1136999


Q ss_pred             EEEcCCCCCcC
Q 006634          584 VICQNSVPQIP  594 (637)
Q Consensus       584 VIGGpPCQ~FS  594 (637)
                      |+.-||+-+..
T Consensus       205 IvsNPPyi~~~  215 (307)
T PRK11805        205 IVSNPPYVDAE  215 (307)
T ss_pred             EEECCCCCCcc
Confidence            99999987654

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.53  E-value=0.016  Score=64.71  Aligned_cols=77  Identities=17%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      +-+|+|||||+|+|++.|-+..   +-|.+||+++.+....+.+-.. |+.. ..++.+|..++...--     ....+|
T Consensus       294 ~~~vlDlYCGvG~f~l~lA~~~---~~V~gvEi~~~aV~~A~~NA~~-n~i~N~~f~~~~ae~~~~~~~-----~~~~~d  364 (432)
T COG2265         294 GERVLDLYCGVGTFGLPLAKRV---KKVHGVEISPEAVEAAQENAAA-NGIDNVEFIAGDAEEFTPAWW-----EGYKPD  364 (432)
T ss_pred             CCEEEEeccCCChhhhhhcccC---CEEEEEecCHHHHHHHHHHHHH-cCCCcEEEEeCCHHHHhhhcc-----ccCCCC
Confidence            4689999999999999998655   4589999999999888776543 3322 3344455544433211     113678


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +|+==||
T Consensus       365 ~VvvDPP  371 (432)
T COG2265         365 VVVVDPP  371 (432)
T ss_pred             EEEECCC
Confidence            8888777

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=95.48  E-value=0.056  Score=57.38  Aligned_cols=83  Identities=23%  Similarity=0.299  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+||+|||=.||+++..-..|.  +-|++||.++.+....+.++.-++.. . ..++..|+-+.    +.. +.+.+.
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~gGA--~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~----l~~-~~~~~~  195 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAAGGA--KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF----LKR-LKKGGR  195 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHHTTE--SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH----HHH-HHHTT-
T ss_pred             CCCceEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HHH-HhcCCC
Confidence            356999999999999999999996  45889999999999988887644322 1 12344555432    211 223468


Q ss_pred             ccEEEEcCCCCCcC
Q 006634          581 IDFVICQNSVPQIP  594 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS  594 (637)
                      ||+||-=||  .|+
T Consensus       196 fD~IIlDPP--sF~  207 (286)
T PF10672_consen  196 FDLIILDPP--SFA  207 (286)
T ss_dssp             EEEEEE--S--SEE
T ss_pred             CCEEEECCC--CCC
Confidence            999999999  565

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=95.43  E-value=0.019  Score=62.01  Aligned_cols=81  Identities=19%  Similarity=0.210  Sum_probs=45.2

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh-----h---HHHhhhc
Q 006634          506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-----K---FESLIHK  577 (637)
Q Consensus       506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~-----~---Ie~l~~~  577 (637)
                      ++||||||+|.+++.|...+   +-|++||+++.+.+.-+.+-...+-....++..+..++...     .   +......
T Consensus       199 ~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~  275 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK  275 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG
T ss_pred             cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh
Confidence            79999999999999997765   46899999999988777665433222222334444433221     0   1100011


Q ss_pred             cCCccEEEEcCC
Q 006634          578 LGSIDFVICQNS  589 (637)
Q Consensus       578 ~g~~DLVIGGpP  589 (637)
                      ...+|+|+==||
T Consensus       276 ~~~~d~vilDPP  287 (352)
T PF05958_consen  276 SFKFDAVILDPP  287 (352)
T ss_dssp             CTTESEEEE---
T ss_pred             hcCCCEEEEcCC
Confidence            226899998888

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=95.40  E-value=0.035  Score=55.50  Aligned_cols=82  Identities=15%  Similarity=0.148  Sum_probs=57.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+...+.+..-. ..++++|+++.+.+..+.+....+.....+..+|+.+.-         ..+.+|
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~-~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------~~~~fD  156 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPD-ARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------PGGKFD  156 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------cCCcee
Confidence            4568999999999999988876322 257899999999988877665432221224455654311         125799


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+.-||+...+
T Consensus       157 ~Vi~npPy~~~~  168 (251)
T TIGR03534       157 LIVSNPPYIPEA  168 (251)
T ss_pred             EEEECCCCCchh
Confidence            999999988765

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=95.27  E-value=0.034  Score=61.06  Aligned_cols=76  Identities=21%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             CCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      +.+|||+|||+|.+++-+. .+|.  ..|+++|+++.+.+..+.+....+.....+..+|+..+        +...+.||
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~--~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~--------l~~~~~fD  127 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGV--EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANAL--------LHEERKFD  127 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHH--------HhhcCCCC
Confidence            3689999999999998874 4564  45899999999999998876533222222344554332        11124689


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +|+-=||
T Consensus       128 ~V~lDP~  134 (382)
T PRK04338        128 VVDIDPF  134 (382)
T ss_pred             EEEECCC
Confidence            9988766

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=95.26  E-value=0.043  Score=61.00  Aligned_cols=85  Identities=14%  Similarity=0.269  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||++||.||.++.+..+ |-. -.|+++|+++...+.++.+....+.....+...|.+++..     .  ..+.|
T Consensus       237 ~g~~VLD~cagpGgkt~~la~~~~~~-g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-----~--~~~~f  308 (431)
T PRK14903        237 PGLRVLDTCAAPGGKTTAIAELMKDQ-GKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-----Y--VQDTF  308 (431)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-----h--hhccC
Confidence            3568999999999999877664 111 2478999999999999887665432222244566654431     1  12469


Q ss_pred             cEEEEcCCCCCcCc
Q 006634          582 DFVICQNSVPQIPN  595 (637)
Q Consensus       582 DLVIGGpPCQ~FS~  595 (637)
                      |.|+-=+||.++..
T Consensus       309 D~Vl~DaPCsg~G~  322 (431)
T PRK14903        309 DRILVDAPCTSLGT  322 (431)
T ss_pred             CEEEECCCCCCCcc
Confidence            99999999998875

>smart00165 UBA Ubiquitin associated domain

Probab=95.18  E-value=0.027  Score=41.29  Aligned_cols=34  Identities=32%  Similarity=0.423  Sum_probs=27.3

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhh
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKI  186 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I  186 (637)
                      +++..|+.|||++++|..|+.+||-|  ++.-++.+
T Consensus         3 ~~v~~L~~mGf~~~~a~~aL~~~~~d--~~~A~~~L   36 (37)
T smart00165        3 EKIDQLLEMGFSREEALKALRAANGN--VERAAEYL   36 (37)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHH
Confidence            45669999999999999999999987  55444443

Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=95.13  E-value=0.033  Score=60.31  Aligned_cols=85  Identities=9%  Similarity=0.074  Sum_probs=55.1

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH--h--hh----
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES--L--IH----  576 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~--l--~~----  576 (637)
                      -+|||||||+|.+++.|.+..   +.|++||+++.+.+..+.+....+-....++.+|+.++-......  +  ..    
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            369999999999999888764   358999999999999988765432212224566765542211000  0  00    


Q ss_pred             ccCCccEEEEcCCCCC
Q 006634          577 KLGSIDFVICQNSVPQ  592 (637)
Q Consensus       577 ~~g~~DLVIGGpPCQ~  592 (637)
                      ....+|+|+=-||=.+
T Consensus       276 ~~~~~d~v~lDPPR~G  291 (353)
T TIGR02143       276 KSYNCSTIFVDPPRAG  291 (353)
T ss_pred             ccCCCCEEEECCCCCC
Confidence            0013799999999433

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=95.12  E-value=0.096  Score=57.96  Aligned_cols=106  Identities=20%  Similarity=0.236  Sum_probs=74.3

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC--ccccccccccChhhHHHhhhccCCc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE--LVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~--l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      |=+||+|||=.|||++..-..|-  .-|++||+++.+...-+.+..-++..+.  .++.+|+-+.    |.....+-..|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gGA--~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~----l~~~~~~g~~f  291 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGGA--SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW----LRKAERRGEKF  291 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcCC--CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH----HHHHHhcCCcc
Confidence            77899999999999999999998  3578999999999988887764433221  2445555432    22222222489


Q ss_pred             cEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634          582 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  635 (637)
Q Consensus       582 DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~  635 (637)
                      ||||-=||  .|+.+      +        ++   . .+++..|.+++.....+
T Consensus       292 DlIilDPP--sF~r~------k--------~~---~-~~~~rdy~~l~~~~~~i  325 (393)
T COG1092         292 DLIILDPP--SFARS------K--------KQ---E-FSAQRDYKDLNDLALRL  325 (393)
T ss_pred             cEEEECCc--ccccC------c--------cc---c-hhHHHHHHHHHHHHHHH
Confidence            99999999  56631      1        11   2 66888898888876544

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.07  E-value=0.046  Score=56.35  Aligned_cols=96  Identities=15%  Similarity=0.081  Sum_probs=63.2

Q ss_pred             Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634          479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  556 (637)
Q Consensus       479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~  556 (637)
                      |.||-.|=+|  ++....+.+.  ...+-+|||+-||.|.++..+.+.+.   -++++|+|+.....++.....  ....
T Consensus         5 k~~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~~~---~v~~vEid~~~~~~l~~~~~~--~~~v   77 (258)
T PRK14896          5 KKLGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKRAK---KVYAIELDPRLAEFLRDDEIA--AGNV   77 (258)
T ss_pred             CcCCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHhcc--CCCE
Confidence            3445555333  3333333332  12457899999999999999999874   378999999998888765432  1122


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634          557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                      .++.+|+.++.-          ..+|+|+|-+|=+
T Consensus        78 ~ii~~D~~~~~~----------~~~d~Vv~NlPy~  102 (258)
T PRK14896         78 EIIEGDALKVDL----------PEFNKVVSNLPYQ  102 (258)
T ss_pred             EEEEeccccCCc----------hhceEEEEcCCcc
Confidence            356778876542          2468999987744

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=94.92  E-value=0.028  Score=63.48  Aligned_cols=88  Identities=11%  Similarity=0.029  Sum_probs=52.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcC--------CceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLG--------IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aG--------i~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      ...+|+|..||.|+|-+++....        +. ..++++|||+.+....+..+...+..+..++.+|.-.-+....   
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~-~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~---  106 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVE-LNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI---  106 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccce-eeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc---
Confidence            45799999999999988875422        22 4578999999998877765543321111122222111000000   


Q ss_pred             hhccCCccEEEEcCCCCCcC
Q 006634          575 IHKLGSIDFVICQNSVPQIP  594 (637)
Q Consensus       575 ~~~~g~~DLVIGGpPCQ~FS  594 (637)
                      ....+.||+|||=||=-...
T Consensus       107 ~~~~~~fD~IIgNPPy~~~k  126 (524)
T TIGR02987       107 ESYLDLFDIVITNPPYGRLK  126 (524)
T ss_pred             ccccCcccEEEeCCCccccC
Confidence            01236899999999976543

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=94.91  E-value=0.066  Score=56.22  Aligned_cols=81  Identities=12%  Similarity=0.071  Sum_probs=56.3

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ..+|||++||.|.+.+.+.+..-.. .++++|+++.+.+..+.+....+... ..+..+|+.+.    +     ..+.||
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~~~-~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~----~-----~~~~fD  191 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFPEA-EVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA----L-----PGRKYD  191 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc----c-----CCCCcc
Confidence            4689999999999999998764222 47899999999988887764332111 12345565321    1     113699


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+.-||+-+.+
T Consensus       192 ~Iv~NPPy~~~~  203 (284)
T TIGR03533       192 LIVSNPPYVDAE  203 (284)
T ss_pred             EEEECCCCCCcc
Confidence            999999997655

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []

Probab=94.65  E-value=0.045  Score=40.55  Aligned_cols=26  Identities=38%  Similarity=0.516  Sum_probs=22.7

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSK  176 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~d  176 (637)
                      +++..|+.|||+++++..|+.+||-+
T Consensus         4 ~~v~~L~~mGf~~~~~~~AL~~~~~n   29 (37)
T PF00627_consen    4 EKVQQLMEMGFSREQAREALRACNGN   29 (37)
T ss_dssp             HHHHHHHHHTS-HHHHHHHHHHTTTS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            56779999999999999999999984

The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=94.55  E-value=0.083  Score=54.97  Aligned_cols=94  Identities=17%  Similarity=0.134  Sum_probs=63.2

Q ss_pred             hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634          480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  557 (637)
Q Consensus       480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l  557 (637)
                      .+|..|-++  .+...+..+.  ...+-+|||+=||.|.++..|.+.|-   -++++|+|+.....++..+..   ....
T Consensus        19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~~---~v~avE~d~~~~~~~~~~~~~---~~v~   90 (272)
T PRK00274         19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERAA---KVTAVEIDRDLAPILAETFAE---DNLT   90 (272)
T ss_pred             ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhCC---cEEEEECCHHHHHHHHHhhcc---CceE
Confidence            345544333  3333344332  23457899999999999999998874   478999999998888765422   2334


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634          558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  589 (637)
                      ++.+|+.++.-..+        ..++|+|-+|
T Consensus        91 ~i~~D~~~~~~~~~--------~~~~vv~NlP  114 (272)
T PRK00274         91 IIEGDALKVDLSEL--------QPLKVVANLP  114 (272)
T ss_pred             EEEChhhcCCHHHc--------CcceEEEeCC
Confidence            56788887753221        1588999888

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=94.31  E-value=0.12  Score=57.14  Aligned_cols=84  Identities=13%  Similarity=0.118  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      .+-+|||++||.||.+.-+.++ + . -.++++|+++...+..+.+....+.. ..+  ..+|...+..      ....+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~-~-~~v~a~D~~~~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~------~~~~~  308 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP-Q-AQVVALDIHEHRLKRVYENLKRLGLT-IKAETKDGDGRGPSQ------WAENE  308 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC-C-CeEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeccccccccc------ccccc
Confidence            3578999999999999887764 3 2 24789999999998888876544221 111  2344432221      00124


Q ss_pred             CccEEEEcCCCCCcCc
Q 006634          580 SIDFVICQNSVPQIPN  595 (637)
Q Consensus       580 ~~DLVIGGpPCQ~FS~  595 (637)
                      .||.|+-.+||.++..
T Consensus       309 ~fD~VllDaPcSg~G~  324 (426)
T TIGR00563       309 QFDRILLDAPCSATGV  324 (426)
T ss_pred             ccCEEEEcCCCCCCcc
Confidence            7999999999999875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=94.30  E-value=0.08  Score=54.23  Aligned_cols=75  Identities=17%  Similarity=0.112  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||+.||.|.++..|.+.+-   .++++|+|+.....++..+..  .....++.+|+.++....       +...+
T Consensus        29 ~~~~VLEiG~G~G~lt~~L~~~~~---~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~~-------~d~~~   96 (253)
T TIGR00755        29 EGDVVLEIGPGLGALTEPLLKRAK---KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLPD-------FPKQL   96 (253)
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCC---cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChhH-------cCCcc
Confidence            457899999999999999999884   378999999999888765532  122235677887765321       11124


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +|+|..|
T Consensus        97 ~vvsNlP  103 (253)
T TIGR00755        97 KVVSNLP  103 (253)
T ss_pred             eEEEcCC
Confidence            8888887

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=94.29  E-value=0.13  Score=51.02  Aligned_cols=55  Identities=20%  Similarity=0.143  Sum_probs=40.7

Q ss_pred             hhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          492 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       492 ~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .++..|......+.+|||+.||.|.+...+...+.   .++++|+++.+....+....
T Consensus        44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~gvD~s~~~i~~a~~~~~   98 (219)
T TIGR02021        44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA---IVKAVDISEQMVQMARNRAQ   98 (219)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHH
Confidence            34444442122467899999999999999988875   46899999999887766543

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=94.26  E-value=0.083  Score=55.12  Aligned_cols=102  Identities=19%  Similarity=0.239  Sum_probs=62.3

Q ss_pred             hhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-Ccccc
Q 006634          482 RHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQI  560 (637)
Q Consensus       482 gnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~  560 (637)
                      +.++++|.+  +|.-.-.. +..-+||||-||+|.+.+.+.+-==+ .-+++||+++.+..--+++-..++-.. ..++.
T Consensus        26 ~~~~~~Dai--LL~~~~~~-~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~  101 (248)
T COG4123          26 GFRYGTDAI--LLAAFAPV-PKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIE  101 (248)
T ss_pred             ccccccHHH--HHHhhccc-ccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEeh
Confidence            456677743  22222221 22678999999999999988765212 236899999998776655433221111 12456


Q ss_pred             ccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634          561 EDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  593 (637)
Q Consensus       561 ~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  593 (637)
                      .||.++....      .+..||+||.-||=-.-
T Consensus       102 ~Di~~~~~~~------~~~~fD~Ii~NPPyf~~  128 (248)
T COG4123         102 ADIKEFLKAL------VFASFDLIICNPPYFKQ  128 (248)
T ss_pred             hhHHHhhhcc------cccccCEEEeCCCCCCC
Confidence            7776654321      23469999999985443

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=94.25  E-value=0.16  Score=50.72  Aligned_cols=84  Identities=21%  Similarity=0.197  Sum_probs=55.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||+.||.|.++..|.+..-+--.|+++|+++......+.+....+.....+..+|..+.-.        ..+.||
T Consensus        77 ~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T TIGR00080        77 PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE--------PLAPYD  148 (215)
T ss_pred             CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc--------ccCCCC
Confidence            467999999999999988876532111378999999988877776654332222344566643211        124799


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+-.+++....
T Consensus       149 ~Ii~~~~~~~~~  160 (215)
T TIGR00080       149 RIYVTAAGPKIP  160 (215)
T ss_pred             EEEEcCCccccc
Confidence            999777766543

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=94.14  E-value=0.046  Score=53.63  Aligned_cols=79  Identities=19%  Similarity=0.177  Sum_probs=46.2

Q ss_pred             CCCcccccCCCCChHHH--HHHHcCCc------eeeEEEeecCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHH
Q 006634          503 GGLTMLSVFSGIGGAEV--TLHRLGIK------LKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFES  573 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlsl--GL~~aGi~------~k~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~~Lt~~~Ie~  573 (637)
                      .+-.|||-|||.|++-+  ++....+.      ...++++||++.+.+.-+.+....+.... .+...|.+++.      
T Consensus        28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~------  101 (179)
T PF01170_consen   28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP------  101 (179)
T ss_dssp             TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG------
T ss_pred             CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc------
Confidence            46789999999999864  34444432      00167999999998888777654432211 12344555554      


Q ss_pred             hhhccCCccEEEEcCC
Q 006634          574 LIHKLGSIDFVICQNS  589 (637)
Q Consensus       574 l~~~~g~~DLVIGGpP  589 (637)
                        ...+.+|+||.=||
T Consensus       102 --~~~~~~d~IvtnPP  115 (179)
T PF01170_consen  102 --LPDGSVDAIVTNPP  115 (179)
T ss_dssp             --GTTSBSCEEEEE--
T ss_pred             --cccCCCCEEEECcc
Confidence              12357999999988

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=94.13  E-value=0.11  Score=54.37  Aligned_cols=80  Identities=14%  Similarity=0.074  Sum_probs=55.7

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      .+||||+||.|.+.+.+....-.. .++++|+++.+.+..+.+....+... ..++.+|+.+-    +.     ...||+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~-~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~----~~-----~~~fDl  185 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNA-EVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP----LA-----GQKIDI  185 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc----Cc-----CCCccE
Confidence            589999999999999988764222 47899999999988887764332211 22344555321    10     126999


Q ss_pred             EEEcCCCCCcC
Q 006634          584 VICQNSVPQIP  594 (637)
Q Consensus       584 VIGGpPCQ~FS  594 (637)
                      |+.-||.-+.+
T Consensus       186 IvsNPPyi~~~  196 (284)
T TIGR00536       186 IVSNPPYIDEE  196 (284)
T ss_pred             EEECCCCCCcc
Confidence            99999998765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK14968 putative methyltransferase; Provisional

Probab=93.96  E-value=0.17  Score=48.18  Aligned_cols=78  Identities=15%  Similarity=0.108  Sum_probs=52.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-++||+.||.|.+...+.+.|.   .++++|+++.+....+++....+...  ..+...|..+-    +.     .+.
T Consensus        23 ~~~~vLd~G~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~----~~-----~~~   90 (188)
T PRK14968         23 KGDRVLEVGTGSGIVAIVAAKNGK---KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP----FR-----GDK   90 (188)
T ss_pred             CCCEEEEEccccCHHHHHHHhhcc---eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc----cc-----ccC
Confidence            456899999999999999988864   46899999988777766543322111  22334554321    11     126


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      +|+|+..+|+..
T Consensus        91 ~d~vi~n~p~~~  102 (188)
T PRK14968         91 FDVILFNPPYLP  102 (188)
T ss_pred             ceEEEECCCcCC
Confidence            999999998754

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=93.93  E-value=0.093  Score=57.58  Aligned_cols=77  Identities=12%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             CCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +++|||+|||+|-..+-+..-  |.  +.|+++|+|+.+.+.++.+....+.....+...|...+-.       .....|
T Consensus        45 ~~~vLD~faGsG~rgir~a~e~~ga--~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~-------~~~~~f  115 (374)
T TIGR00308        45 YINIADALSASGIRAIRYAHEIEGV--REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLR-------YRNRKF  115 (374)
T ss_pred             CCEEEECCCchhHHHHHHHhhCCCC--CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHH-------HhCCCC
Confidence            589999999999776555443  65  4689999999999999987743321111233344432211       112357


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|.==||
T Consensus       116 DvIdlDPf  123 (374)
T TIGR00308       116 HVIDIDPF  123 (374)
T ss_pred             CEEEeCCC
Confidence            88876554

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>cd00194 UBA Ubiquitin Associated domain

Probab=93.88  E-value=0.085  Score=38.78  Aligned_cols=35  Identities=29%  Similarity=0.423  Sum_probs=27.9

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhh
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF  187 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~  187 (637)
                      +++..|+.|||+++++..|+.+|+-|  ++.-++.|+
T Consensus         3 ~~v~~L~~mGf~~~~~~~AL~~~~~d--~~~A~~~L~   37 (38)
T cd00194           3 EKLEQLLEMGFSREEARKALRATNNN--VERAVEWLL   37 (38)
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHh
Confidence            45669999999999999999999985  555555543

The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=93.83  E-value=0.096  Score=55.15  Aligned_cols=78  Identities=15%  Similarity=0.245  Sum_probs=56.7

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEE
Q 006634          506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVI  585 (637)
Q Consensus       506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVI  585 (637)
                      +|+||.||.|-+.+++...+-. -.|+++||++.|.++-+.+....+-       .++..+.. ++-.  .-.+.||+|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~-~~V~a~Dis~~Al~~A~~Na~~~~l-------~~~~~~~~-dlf~--~~~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD-AEVIAVDISPDALALARENAERNGL-------VRVLVVQS-DLFE--PLRGKFDLIV  181 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC-CeEEEEECCHHHHHHHHHHHHHcCC-------ccEEEEee-eccc--ccCCceeEEE
Confidence            7999999999999999988754 3678999999999988887654431       12333333 2211  1235899999


Q ss_pred             EcCCCCCcC
Q 006634          586 CQNSVPQIP  594 (637)
Q Consensus       586 GGpPCQ~FS  594 (637)
                      .-||==+-.
T Consensus       182 sNPPYip~~  190 (280)
T COG2890         182 SNPPYIPAE  190 (280)
T ss_pred             eCCCCCCCc
Confidence            999977766

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=93.82  E-value=0.13  Score=55.65  Aligned_cols=98  Identities=21%  Similarity=0.237  Sum_probs=60.2

Q ss_pred             Hhhhhhhcccch----hhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC
Q 006634          479 ESLRHCFQTDTL----GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT  554 (637)
Q Consensus       479 k~Lgnsfqvdtv----~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~  554 (637)
                      ..+...|+.+.+    +.+++.|.... . -+||||.||.|.+...+.+.+=.. .++++|+++.+.+.-+.+....+-.
T Consensus       170 ~~~pgvFs~~~lD~gt~lLl~~l~~~~-~-g~VLDlGCG~G~ls~~la~~~p~~-~v~~vDis~~Al~~A~~nl~~n~l~  246 (342)
T PRK09489        170 KTLPGVFSRDGLDVGSQLLLSTLTPHT-K-GKVLDVGCGAGVLSAVLARHSPKI-RLTLSDVSAAALESSRATLAANGLE  246 (342)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHhccccC-C-CeEEEeccCcCHHHHHHHHhCCCC-EEEEEECCHHHHHHHHHHHHHcCCC
Confidence            334445544333    33355444322 2 379999999999998888764222 3789999999988877766543222


Q ss_pred             CCccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634          555 GELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       555 g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      + .+...|+..    .+      .+.||+|+..||=
T Consensus       247 ~-~~~~~D~~~----~~------~~~fDlIvsNPPF  271 (342)
T PRK09489        247 G-EVFASNVFS----DI------KGRFDMIISNPPF  271 (342)
T ss_pred             C-EEEEccccc----cc------CCCccEEEECCCc
Confidence            2 233344421    01      2579999998883

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=93.65  E-value=0.19  Score=43.81  Aligned_cols=74  Identities=23%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             CCcccccCCCCChHHHHHHH--cCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006634          504 GLTMLSVFSGIGGAEVTLHR--LGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~--aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +-+||||=||.|.+...+.+  .|.+   +++||+++...+..+........ ....++.+|+ ....       ...++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------~~~~~   70 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGAR---VVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------DFLEP   70 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSE---EEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------TTSSC
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCE---EEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------ccCCC
Confidence            45799999999999999999  7764   78999999999988887632221 2223456777 2211       12357


Q ss_pred             ccEEEEcC
Q 006634          581 IDFVICQN  588 (637)
Q Consensus       581 ~DLVIGGp  588 (637)
                      +|+|+...
T Consensus        71 ~D~v~~~~   78 (112)
T PF12847_consen   71 FDLVICSG   78 (112)
T ss_dssp             EEEEEECS
T ss_pred             CCEEEECC
Confidence            99998655

...

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=93.49  E-value=0.26  Score=43.31  Aligned_cols=76  Identities=20%  Similarity=0.187  Sum_probs=48.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|+||.||.|.+..-+.+..=. ..++++|+++...+..+.+....+.....+..+|+......       ..+.+|
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~D   90 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED-------SLPEPD   90 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-------hcCCCC
Confidence            3468999999999999888765211 34789999999988887765433222222334554422110       124688


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+-
T Consensus        91 ~v~~   94 (124)
T TIGR02469        91 RVFI   94 (124)
T ss_pred             EEEE
Confidence            8875

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=93.42  E-value=0.17  Score=53.15  Aligned_cols=46  Identities=17%  Similarity=0.180  Sum_probs=39.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      .+-+|||+.||.|.+++++.++|.  ..++++|+++.+.+..+.+...
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~--~~V~avDid~~al~~a~~n~~~  204 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGA--AKVVGIDIDPLAVESARKNAEL  204 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHH
Confidence            457899999999999999999986  4688999999998888776643

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=93.41  E-value=0.074  Score=55.62  Aligned_cols=107  Identities=18%  Similarity=0.108  Sum_probs=54.7

Q ss_pred             HhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHHc------CCceeeEEEeecCHHHHHHHHHHhhhcC
Q 006634          479 ESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWESSG  552 (637)
Q Consensus       479 k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a------Gi~~k~vvaVEid~~a~~t~r~~~~~tn  552 (637)
                      |.+|..|....++.++.-+-... .+-+|+|.+||.|||-+++.+.      -+.-..++++|+++.+..+.+.+..-++
T Consensus        23 k~~G~~~TP~~i~~l~~~~~~~~-~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~  101 (311)
T PF02384_consen   23 KKLGQFYTPREIVDLMVKLLNPK-KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHG  101 (311)
T ss_dssp             TSCGGC---HHHHHHHHHHHTT--TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             cccceeehHHHHHHHHHhhhhcc-ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhc
Confidence            44566666666666654444332 3568999999999998877651      0112357899999999876554322111


Q ss_pred             CCCC--ccccccccccChhhHHHhhh-ccCCccEEEEcCCCCCc
Q 006634          553 QTGE--LVQIEDIQALTTKKFESLIH-KLGSIDFVICQNSVPQI  593 (637)
Q Consensus       553 ~~g~--l~~~~DI~~Lt~~~Ie~l~~-~~g~~DLVIGGpPCQ~F  593 (637)
                      -...  .+..+|.       +..... ....+|+|+|-||=-..
T Consensus       102 ~~~~~~~i~~~d~-------l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  102 IDNSNINIIQGDS-------LENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             HHCBGCEEEES-T-------TTSHSCTST--EEEEEEE--CTCE
T ss_pred             ccccccccccccc-------ccccccccccccccccCCCCcccc
Confidence            0011  1223332       111111 13579999999996655

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=93.10  E-value=0.33  Score=48.28  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||+.||.|.+...+.+. |-. ..++++|+++...+..+......+.....++.+|+.++..        ..+.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  115 (231)
T TIGR02752        45 AGTSALDVCCGTADWSIALAEAVGPE-GHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF--------DDNSF  115 (231)
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--------CCCCc
Confidence            4578999999999998887654 322 2478999999988777665432222222234566655431        12479


Q ss_pred             cEEEEcCCCCCc
Q 006634          582 DFVICQNSVPQI  593 (637)
Q Consensus       582 DLVIGGpPCQ~F  593 (637)
                      |+|+-+...+.+
T Consensus       116 D~V~~~~~l~~~  127 (231)
T TIGR02752       116 DYVTIGFGLRNV  127 (231)
T ss_pred             cEEEEecccccC
Confidence            999987766554

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=93.09  E-value=0.2  Score=49.30  Aligned_cols=75  Identities=12%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +.+|||+-||.|-+++.+..++-. ..|+++|+++......+.+..+.+.....++.+|+.++..         .+.+|+
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~-~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~---------~~~fD~  112 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPE-LKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH---------EEQFDV  112 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc---------cCCccE
Confidence            678999999999888777655422 2478999999888777766654432222345677765421         257999


Q ss_pred             EEEcC
Q 006634          584 VICQN  588 (637)
Q Consensus       584 VIGGp  588 (637)
                      |+...
T Consensus       113 I~s~~  117 (181)
T TIGR00138       113 ITSRA  117 (181)
T ss_pred             EEehh
Confidence            98653

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.91  E-value=0.15  Score=49.88  Aligned_cols=76  Identities=17%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+++||-||||-++.|+...+-  +.++++|||+.|..|+.++-+... -..-+.+.||.++-.        ..|-||
T Consensus        48 Egkkl~DLgcgcGmLs~a~sm~~~--e~vlGfDIdpeALEIf~rNaeEfE-vqidlLqcdildle~--------~~g~fD  116 (185)
T KOG3420|consen   48 EGKKLKDLGCGCGMLSIAFSMPKN--ESVLGFDIDPEALEIFTRNAEEFE-VQIDLLQCDILDLEL--------KGGIFD  116 (185)
T ss_pred             cCcchhhhcCchhhhHHHhhcCCC--ceEEeeecCHHHHHHHhhchHHhh-hhhheeeeeccchhc--------cCCeEe
Confidence            578899999999999999999886  578999999999999876543221 001123455554332        236788


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      ..+=-||
T Consensus       117 taviNpp  123 (185)
T KOG3420|consen  117 TAVINPP  123 (185)
T ss_pred             eEEecCC
Confidence            8887776

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=92.87  E-value=0.19  Score=53.33  Aligned_cols=98  Identities=17%  Similarity=0.122  Sum_probs=65.2

Q ss_pred             Hhhhhhh--cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC-CCC
Q 006634          479 ESLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-QTG  555 (637)
Q Consensus       479 k~Lgnsf--qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn-~~g  555 (637)
                      |.||-.|  +...+..++..+.  ...+-+|||+-||.|.++..|...+-   -++++|+|+.....++..+...+ ...
T Consensus        12 k~~GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~~~---~V~avEiD~~li~~l~~~~~~~~~~~~   86 (294)
T PTZ00338         12 KKFGQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQLAK---KVIAIEIDPRMVAELKKRFQNSPLASK   86 (294)
T ss_pred             CCCCccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHhCC---cEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            4557766  2334444444332  22456899999999999999888764   37899999999998887654332 122


Q ss_pred             CccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634          556 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       556 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                      ..++.+|+.++.          +..+|+|++-.|=+
T Consensus        87 v~ii~~Dal~~~----------~~~~d~VvaNlPY~  112 (294)
T PTZ00338         87 LEVIEGDALKTE----------FPYFDVCVANVPYQ  112 (294)
T ss_pred             EEEEECCHhhhc----------ccccCEEEecCCcc
Confidence            235677776543          13578999877644

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=92.64  E-value=0.47  Score=46.91  Aligned_cols=43  Identities=19%  Similarity=0.126  Sum_probs=36.2

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      +-+|||+=||.|..++-|.+.|++   |.++|+++.+....+..-.
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~g~~---V~gvD~S~~~i~~a~~~~~   73 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAANGFD---VTAWDKNPMSIANLERIKA   73 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHCCCE---EEEEeCCHHHHHHHHHHHH
Confidence            468999999999999999999874   6899999998877766443

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=92.53  E-value=0.37  Score=47.68  Aligned_cols=80  Identities=23%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.++.-|.+++-   .++++|+++......+.++...+.....+..+|..+.-        ...+.||
T Consensus        78 ~~~~VLeiG~GsG~~t~~la~~~~---~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~fD  146 (212)
T PRK00312         78 PGDRVLEIGTGSGYQAAVLAHLVR---RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW--------PAYAPFD  146 (212)
T ss_pred             CCCEEEEECCCccHHHHHHHHHhC---EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--------CcCCCcC
Confidence            468999999999999988777753   47899999998888887776543222223445543211        1125799


Q ss_pred             EEEEcCCCCCc
Q 006634          583 FVICQNSVPQI  593 (637)
Q Consensus       583 LVIGGpPCQ~F  593 (637)
                      +|+-..+|..+
T Consensus       147 ~I~~~~~~~~~  157 (212)
T PRK00312        147 RILVTAAAPEI  157 (212)
T ss_pred             EEEEccCchhh
Confidence            99888777654

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=92.48  E-value=0.23  Score=50.91  Aligned_cols=52  Identities=23%  Similarity=0.296  Sum_probs=41.4

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .|..+...+-+|||+-||.|.+.+.+.+.|..  .++++|+|+.+.+..+.+..
T Consensus       112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~--~v~giDis~~~l~~A~~n~~  163 (250)
T PRK00517        112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAK--KVLAVDIDPQAVEAARENAE  163 (250)
T ss_pred             HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEEECCHHHHHHHHHHHH
Confidence            33333446789999999999999999999864  47899999999887776654

>PRK07402 precorrin-6B methylase; Provisional

Probab=92.44  E-value=0.45  Score=46.63  Aligned_cols=47  Identities=23%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      .+-+|||++||.|.+...+.+++-. ..++++|+++...+..+.+...
T Consensus        40 ~~~~VLDiG~G~G~~~~~la~~~~~-~~V~~vD~s~~~~~~a~~n~~~   86 (196)
T PRK07402         40 PDSVLWDIGAGTGTIPVEAGLLCPK-GRVIAIERDEEVVNLIRRNCDR   86 (196)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHH
Confidence            3568999999999999888765322 3578999999999888876643

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=92.41  E-value=0.3  Score=54.65  Aligned_cols=78  Identities=12%  Similarity=0.020  Sum_probs=52.4

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-++|||.||.|.+.+.+.+..-. ..++++|+++.+.+..+.+....+ ....+..+|+.+..   +    ...+.||+
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~-a~VtAVDiS~~ALe~AreNa~~~g-~rV~fi~gDl~e~~---l----~~~~~FDL  322 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPD-AFVRASDISPPALETARKNAADLG-ARVEFAHGSWFDTD---M----PSEGKWDI  322 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcC-CcEEEEEcchhccc---c----ccCCCccE
Confidence            458999999999999887654211 247899999999998888765432 12224456664321   0    01246999


Q ss_pred             EEEcCCC
Q 006634          584 VICQNSV  590 (637)
Q Consensus       584 VIGGpPC  590 (637)
                      |+.-||=
T Consensus       323 IVSNPPY  329 (423)
T PRK14966        323 IVSNPPY  329 (423)
T ss_pred             EEECCCC
Confidence            9988873

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=92.37  E-value=0.21  Score=53.13  Aligned_cols=83  Identities=19%  Similarity=0.256  Sum_probs=53.8

Q ss_pred             CcccccCCCCChHHHHH-HHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          505 LTMLSVFSGIGGAEVTL-HRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL-~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      ..++|++||.|.+++++ |.++ + -.+.|+|.++.|.+.-..|-....-.|.+-++.-|.+  .+.........|..|+
T Consensus       150 ~~ildlgtGSGaIslsll~~L~-~-~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me--~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  150 THILDLGTGSGAISLSLLHGLP-Q-CTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME--SDASDEHPLLEGKIDL  225 (328)
T ss_pred             ceEEEecCCccHHHHHHHhcCC-C-ceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc--cccccccccccCceeE
Confidence            36999999999999996 5666 4 3678999999999887766543322233222222222  2222222234588999


Q ss_pred             EEEcCCCC
Q 006634          584 VICQNSVP  591 (637)
Q Consensus       584 VIGGpPCQ  591 (637)
                      +++-||--
T Consensus       226 lvsNPPYI  233 (328)
T KOG2904|consen  226 LVSNPPYI  233 (328)
T ss_pred             EecCCCcc
Confidence            99999853

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=92.08  E-value=0.38  Score=47.55  Aligned_cols=45  Identities=24%  Similarity=0.330  Sum_probs=37.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      .+.+|||+-||.|.+...|.+.|..   +.++|+++......+..+..
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~~~---v~~~D~s~~~i~~a~~~~~~  107 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRGAK---VVASDISPQMVEEARERAPE  107 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHh
Confidence            4678999999999999999988853   78999999988877776543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=92.07  E-value=0.5  Score=45.89  Aligned_cols=47  Identities=17%  Similarity=0.155  Sum_probs=37.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      .+-+|||+.||.|.+.+.+.+.+-. ..++++|+++.+....+.+...
T Consensus        31 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~n~~~   77 (187)
T PRK08287         31 RAKHLIDVGAGTGSVSIEAALQFPS-LQVTAIERNPDALRLIKENRQR   77 (187)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            4678999999999999988776532 2478999999998888776543

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=91.82  E-value=0.31  Score=38.15  Aligned_cols=37  Identities=24%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHh--CCCCcHHHHHHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKL--GKDAPVYELVDF  113 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~--G~da~i~~Lld~  113 (637)
                      .++.+..|++.||++.+|.+|+.+.  +++.++++++--
T Consensus         3 ~~d~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik~   41 (47)
T PF07499_consen    3 LEDALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIKQ   41 (47)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHHH
Confidence            4678899999999999999999999  788887776643

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=91.81  E-value=0.44  Score=51.32  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=36.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  548 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~  548 (637)
                      .+.+|||+-||.|.+...|.+.|..   |++||+++...+..+.+.
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~---V~GID~s~~~i~~Ar~~~  173 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGAT---VTGVDAVDKNVKIARLHA  173 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHH
Confidence            4679999999999999999998863   789999999888777643

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=91.53  E-value=0.93  Score=51.64  Aligned_cols=82  Identities=16%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCccccc----c-hhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLY----G-TME  151 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~----~-~~~  151 (637)
                      +--.+++|+.||||++...+|+=--|.-++ +.-.+.|+.+-.-..        ++  |   ....++.+.    + ...
T Consensus       558 Nqs~I~qL~~mGfp~~~~~rAL~~tgNqDa-EsAMNWLFqHMdDPd--------ln--d---P~~~~~~vPKkDkeVdE~  623 (749)
T COG5207         558 NQSLIRQLVDMGFPEEDAARALGITGNQDA-ESAMNWLFQHMDDPD--------LN--D---PFVPPPNVPKKDKEVDES  623 (749)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHhhccCcch-HHHHHHHHhhccCcc--------cC--C---CCCCCCCCCcccccccHH
Confidence            456789999999999999999999999886 788888887632111        11  1   000000000    1 124


Q ss_pred             hHHHHHhcCCCHHHHHHHHHh
Q 006634          152 ITLQLLEMGFSENQVSLAIEK  172 (637)
Q Consensus       152 k~~~L~~MGfseeEas~Ai~r  172 (637)
                      +..+|+.|||....++-|+=-
T Consensus       624 ~~~Slle~Gln~n~~Rkal~~  644 (749)
T COG5207         624 KARSLLENGLNPNLCRKALMD  644 (749)
T ss_pred             HHHHHHHcCCCHHHHHHHHHH
Confidence            667999999999999987643

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=91.37  E-value=0.34  Score=51.95  Aligned_cols=55  Identities=22%  Similarity=0.300  Sum_probs=46.6

Q ss_pred             hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      =|.-|..+-..+.+|||+=||.|=+++|..++|.  +-++++|||+.|.++-+.+-.
T Consensus       152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA--~~v~g~DiDp~AV~aa~eNa~  206 (300)
T COG2264         152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGA--KKVVGVDIDPQAVEAARENAR  206 (300)
T ss_pred             HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCC--ceEEEecCCHHHHHHHHHHHH
Confidence            3555666666889999999999999999999997  468999999999998887654

>PF09288 UBA_3: Fungal ubiquitin-associated domain ; InterPro: IPR015368 This C-terminal domain is found in ubiquitin binding proteins, it adopts a structure consisting of a three alpha-helix bundle

Probab=91.34  E-value=0.27  Score=40.41  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=22.0

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCC
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDA  105 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da  105 (637)
                      +.+.+..|+.|||+.+-|..|+++.|-+.
T Consensus         9 ~~~lVd~F~~mGF~~dkVvevlrrlgik~   37 (55)
T PF09288_consen    9 DKDLVDQFENMGFERDKVVEVLRRLGIKS   37 (55)
T ss_dssp             SHHHHHHHHHHT--HHHHHHHHHHS--SS
T ss_pred             CHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence            45678999999999999999999998754

This domain is predominantly found in fungi []. ; PDB: 1TTE_A.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=90.99  E-value=0.65  Score=45.75  Aligned_cols=78  Identities=15%  Similarity=0.179  Sum_probs=47.8

Q ss_pred             CCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcC-CCCCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSG-QTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn-~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||+.||.|.+++.+.+ +|-. ..++++|+++...+..+.+....+ .....+..+|..++    +..   ..+.
T Consensus        40 ~~~~vlDlG~GtG~~s~~~a~~~~~~-~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~----l~~---~~~~  111 (198)
T PRK00377         40 KGDMILDIGCGTGSVTVEASLLVGET-GKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEI----LFT---INEK  111 (198)
T ss_pred             CcCEEEEeCCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhh----Hhh---cCCC
Confidence            457899999999999988754 3422 247899999998887766543322 01111233444321    111   1257


Q ss_pred             ccEEEEcC
Q 006634          581 IDFVICQN  588 (637)
Q Consensus       581 ~DLVIGGp  588 (637)
                      +|+|+-|.
T Consensus       112 ~D~V~~~~  119 (198)
T PRK00377        112 FDRIFIGG  119 (198)
T ss_pred             CCEEEECC
Confidence            99988754

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=90.95  E-value=0.41  Score=52.79  Aligned_cols=75  Identities=13%  Similarity=0.106  Sum_probs=50.8

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC----ccccccccccChhhHHHhhhccCC
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE----LVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~----l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      -+||||.||.|-+.+.+.+.+=. --|++||+++.+...-+.++... ....    .+...|+.+       .+  ..+.
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~-~~V~~vD~S~~Av~~A~~N~~~n-~~~~~~~v~~~~~D~l~-------~~--~~~~  298 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETN-MPEALDRCEFMINNALS-------GV--EPFR  298 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc-CcccCceEEEEEccccc-------cC--CCCC
Confidence            38999999999999988877522 24789999999999888877533 2211    122333321       00  1246


Q ss_pred             ccEEEEcCCC
Q 006634          581 IDFVICQNSV  590 (637)
Q Consensus       581 ~DLVIGGpPC  590 (637)
                      ||+|+.-||.
T Consensus       299 fDlIlsNPPf  308 (378)
T PRK15001        299 FNAVLCNPPF  308 (378)
T ss_pred             EEEEEECcCc
Confidence            9999998885

>KOG2730 consensus Methylase [General function prediction only]

Probab=90.86  E-value=0.33  Score=50.31  Aligned_cols=103  Identities=16%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-Ccccccccc
Q 006634          486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQ  564 (637)
Q Consensus       486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~  564 (637)
                      ++.-++-|+.--+.-+.+.-.+||-|||+||-..=|-.-|-   .|.++|||+.....-+++-+-.+-+. ..++++|+-
T Consensus        77 Tpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~---~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l  153 (263)
T KOG2730|consen   77 TPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGP---YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL  153 (263)
T ss_pred             ccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCC---eEEEEeccHHHHHHHhccceeecCCceeEEEechHH
Confidence            44455666554444444667899999999999999988885   36799999997665554322111111 114566665


Q ss_pred             ccChhhHHHhhhccCCccEEEEcCCCCCcCc
Q 006634          565 ALTTKKFESLIHKLGSIDFVICQNSVPQIPN  595 (637)
Q Consensus       565 ~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  595 (637)
                      ++-. .+ ++.+  .-+|+|.+.||=-+-|.
T Consensus       154 d~~~-~l-q~~K--~~~~~vf~sppwggp~y  180 (263)
T KOG2730|consen  154 DLAS-KL-KADK--IKYDCVFLSPPWGGPSY  180 (263)
T ss_pred             HHHH-HH-hhhh--heeeeeecCCCCCCcch
Confidence            4321 11 1111  23789998888766664

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=90.81  E-value=0.51  Score=50.69  Aligned_cols=43  Identities=21%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  548 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~  548 (637)
                      .+.+|||+-||.|.+...|.+.|.+   |+++|+++...+..+...
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~~---V~gvD~S~~ml~~A~~~~  186 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGAI---VSASDISAAMVAEAERRA  186 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHH
Confidence            4679999999999999999999863   789999999877666543

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=90.75  E-value=0.52  Score=53.66  Aligned_cols=81  Identities=15%  Similarity=0.066  Sum_probs=52.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      +.+|||+.||.|.+.+++...- +-..++++|+++.+.+..+.+....+... ..+..+|+.+       .+  ..+.||
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~-------~~--~~~~fD  208 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE-------NI--EKQKFD  208 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh-------hC--cCCCcc
Confidence            4689999999999998876431 11247899999999998887754332111 1123444321       11  124699


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+..||=-+.+
T Consensus       209 lIvsNPPYi~~~  220 (506)
T PRK01544        209 FIVSNPPYISHS  220 (506)
T ss_pred             EEEECCCCCCch
Confidence            999999855443

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=90.49  E-value=0.56  Score=47.93  Aligned_cols=78  Identities=21%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+.+|||+=||.|.++..|.+.|.+   |+++|+++...+..+......+... ..++.+|+.++..     .  ..+.
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~g~~---v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~-----~--~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAELGHQ---VILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQ-----H--LETP  112 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhh-----h--cCCC
Confidence            35679999999999999999999863   6899999998887776543322111 1234566665432     0  1246


Q ss_pred             ccEEEEcCC
Q 006634          581 IDFVICQNS  589 (637)
Q Consensus       581 ~DLVIGGpP  589 (637)
                      ||+|+....
T Consensus       113 fD~V~~~~v  121 (255)
T PRK11036        113 VDLILFHAV  121 (255)
T ss_pred             CCEEEehhH
Confidence            888886544

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=90.45  E-value=0.58  Score=48.83  Aligned_cols=72  Identities=33%  Similarity=0.356  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+++|||.=||.|=++.-+.++|.   .|.++|+++.+..+-+.++..+.   ..   -|=...+.+   ++...-+.||
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga---~VtgiD~se~~I~~Ak~ha~e~g---v~---i~y~~~~~e---dl~~~~~~FD  126 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGA---SVTGIDASEKPIEVAKLHALESG---VN---IDYRQATVE---DLASAGGQFD  126 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCC---eeEEecCChHHHHHHHHhhhhcc---cc---ccchhhhHH---HHHhcCCCcc
Confidence            479999999999999999999996   47899999999999887775442   21   122223333   3332237899


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus       127 vV~c  130 (243)
T COG2227         127 VVTC  130 (243)
T ss_pred             EEEE
Confidence            9983

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=90.39  E-value=0.34  Score=50.09  Aligned_cols=98  Identities=20%  Similarity=0.177  Sum_probs=65.6

Q ss_pred             hhhhhh--cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634          480 SLRHCF--QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  557 (637)
Q Consensus       480 ~Lgnsf--qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l  557 (637)
                      .+|-.|  +..++..+.+.+...  .+.+||++-+|.|-++..|...|   +-++++|+|+.....++..+.  ......
T Consensus         7 ~~gQnFL~~~~~~~~Iv~~~~~~--~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~   79 (262)
T PF00398_consen    7 SLGQNFLVDPNIADKIVDALDLS--EGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVE   79 (262)
T ss_dssp             GCTSSEEEHHHHHHHHHHHHTCG--TTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEE
T ss_pred             CCCcCeeCCHHHHHHHHHhcCCC--CCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccce
Confidence            344444  222344444444322  57889999999999999999998   458899999999999987543  122233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634          558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  589 (637)
                      ++.+|+.+++.....     .....+|+|--|
T Consensus        80 vi~~D~l~~~~~~~~-----~~~~~~vv~NlP  106 (262)
T PF00398_consen   80 VINGDFLKWDLYDLL-----KNQPLLVVGNLP  106 (262)
T ss_dssp             EEES-TTTSCGGGHC-----SSSEEEEEEEET
T ss_pred             eeecchhccccHHhh-----cCCceEEEEEec
Confidence            567999888764321     235667888777

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>TIGR00478 tly hemolysin TlyA family protein

Probab=90.34  E-value=0.51  Score=48.55  Aligned_cols=75  Identities=16%  Similarity=0.196  Sum_probs=48.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH-HHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR-ILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~-t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-++||+-||.||++..+.+.|.  +.|++||+++.-.. .++.     +.........+|+.++.+++.   ..+..+
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~ga--~~v~avD~~~~~l~~~l~~-----~~~v~~~~~~ni~~~~~~~~~---~d~~~~  144 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQKGA--KEVYGVDVGYNQLAEKLRQ-----DERVKVLERTNIRYVTPADIF---PDFATF  144 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHcCC--CEEEEEeCCHHHHHHHHhc-----CCCeeEeecCCcccCCHhHcC---CCceee
Confidence            567899999999999999999985  56899999995322 2321     111112345677766655542   123456


Q ss_pred             cEEEEc
Q 006634          582 DFVICQ  587 (637)
Q Consensus       582 DLVIGG  587 (637)
                      |+++-+
T Consensus       145 DvsfiS  150 (228)
T TIGR00478       145 DVSFIS  150 (228)
T ss_pred             eEEEee
Confidence            666543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=90.10  E-value=0.68  Score=46.03  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=52.9

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634          499 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       499 ~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      ++++.+.+|||+=||.|.+++.+.++.-. ..|+++|+++......+.+....+.....++.+|+.++..         .
T Consensus        41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~-~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~---------~  110 (187)
T PRK00107         41 PYLPGGERVLDVGSGAGFPGIPLAIARPE-LKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ---------E  110 (187)
T ss_pred             hhcCCCCeEEEEcCCCCHHHHHHHHHCCC-CeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC---------C
Confidence            33444789999999999988877653322 2578999999988777766554432222345566655432         2


Q ss_pred             CCccEEEEc
Q 006634          579 GSIDFVICQ  587 (637)
Q Consensus       579 g~~DLVIGG  587 (637)
                      +.||+|+..
T Consensus       111 ~~fDlV~~~  119 (187)
T PRK00107        111 EKFDVVTSR  119 (187)
T ss_pred             CCccEEEEc
Confidence            479999963

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=89.77  E-value=1.5  Score=51.45  Aligned_cols=101  Identities=21%  Similarity=0.260  Sum_probs=63.6

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccC--CCCCCCCCCCCCCCCcccccchhhhHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKET--DDAPHDNDGTNEDKSDETLYGTMEITL  154 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~--~d~~~d~d~~~~e~~~e~~~~~~~k~~  154 (637)
                      .--.+..|+.||||++-..+|+==-|...+ +.-...|+.+=.-...++--  .....-.++.  +. +|      +-..
T Consensus       571 d~s~i~qL~~MGFp~eac~rAly~tgN~~a-EaA~NWl~~HMdDpd~~~p~vvp~~~~~a~~~--~~-~e------~~v~  640 (763)
T KOG0944|consen  571 DRSVISQLVEMGFPEEACRRALYYTGNSGA-EAASNWLMEHMDDPDIDDPFVVPGNSPKADAR--EV-DE------ESVA  640 (763)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHhhhcCccH-HHHHHHHHHhccCcccCCceecCCCCCccccC--CC-Ch------hHhe
Confidence            344678999999999999999988888775 55566666553211110000  0000000110  01 11      2233


Q ss_pred             HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006634          155 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG  189 (637)
Q Consensus       155 ~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aa  189 (637)
                      +++.|||+..+|..|+.-.  +..|+.+||-|++-
T Consensus       641 si~smGf~~~qa~~aL~~~--n~nveravDWif~h  673 (763)
T KOG0944|consen  641 SIVSMGFSRNQAIKALKAT--NNNVERAVDWIFSH  673 (763)
T ss_pred             eeeeecCcHHHHHHHHHhc--CccHHHHHHHHHhc
Confidence            8899999999999888654  55799999999874

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=89.73  E-value=0.31  Score=52.38  Aligned_cols=54  Identities=26%  Similarity=0.270  Sum_probs=43.3

Q ss_pred             hhccccccCCCCCcccccCCCCChHHH-HHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlsl-GL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      -++|+ +++..+-.++|||||||=|++ -+-.+|.  +.|+|+|+++-+...|++.-.
T Consensus       185 K~Rv~-~~sc~~eviVDLYAGIGYFTlpflV~agA--k~V~A~EwNp~svEaLrR~~~  239 (351)
T KOG1227|consen  185 KKRVL-NTSCDGEVIVDLYAGIGYFTLPFLVTAGA--KTVFACEWNPWSVEALRRNAE  239 (351)
T ss_pred             HHHhh-hcccccchhhhhhcccceEEeehhhccCc--cEEEEEecCHHHHHHHHHHHH
Confidence            34444 334556779999999999999 7789997  579999999999999998654

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=89.59  E-value=0.74  Score=45.77  Aligned_cols=81  Identities=20%  Similarity=0.118  Sum_probs=53.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccc-cccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDI-QALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI-~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|.+...+.+.. +-..+++||+++......+++..........++.+|+ ..+.     .. ...+.|
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-----~~-~~~~~~  112 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-----DM-FPDGSL  112 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-----HH-cCcccc
Confidence            45789999999999999886653 2235899999999988887765433222222455666 3221     11 113569


Q ss_pred             cEEEEcCCC
Q 006634          582 DFVICQNSV  590 (637)
Q Consensus       582 DLVIGGpPC  590 (637)
                      |+|+--+|.
T Consensus       113 D~V~~~~~~  121 (202)
T PRK00121        113 DRIYLNFPD  121 (202)
T ss_pred             ceEEEECCC
Confidence            999876554

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=89.01  E-value=1.1  Score=45.16  Aligned_cols=73  Identities=14%  Similarity=0.059  Sum_probs=46.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g~~  581 (637)
                      .+-+||||=||.|+++..+.+..-.-..|++||+++..           +.++..++.+||.+... ..|.... ..+.+
T Consensus        51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~-----------~~~~v~~i~~D~~~~~~~~~i~~~~-~~~~~  118 (209)
T PRK11188         51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----------PIVGVDFLQGDFRDELVLKALLERV-GDSKV  118 (209)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccccc-----------CCCCcEEEecCCCChHHHHHHHHHh-CCCCC
Confidence            45689999999999987665542122358999999831           12344467889887542 2222111 23679


Q ss_pred             cEEEEc
Q 006634          582 DFVICQ  587 (637)
Q Consensus       582 DLVIGG  587 (637)
                      |+|+..
T Consensus       119 D~V~S~  124 (209)
T PRK11188        119 QVVMSD  124 (209)
T ss_pred             CEEecC
Confidence            999974

>PRK00117 recX recombination regulator RecX; Reviewed

Probab=88.73  E-value=11  Score=35.95  Aligned_cols=77  Identities=14%  Similarity=0.087  Sum_probs=50.5

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HH
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QL  156 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L  156 (637)
                      -.....|..-||+.+.|..|++++.+ +. .+++..++.-......                   ..+. ....|+. +|
T Consensus        79 ~~I~~~L~~kGi~~~~I~~~l~~~~~-d~-~e~a~~~~~k~~~~~~-------------------~~~~-~~k~Ki~~~L  136 (157)
T PRK00117         79 RRIRQELRQKGVDREIIEEALAELDI-DW-EELARELARKKFRRPL-------------------PDDA-KEKAKLVRFL  136 (157)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCc-cH-HHHHHHHHHHHcCCCC-------------------CCCH-HHHHHHHHHH
Confidence            34557899999999999999999973 32 2333333332221110                   0001 1234665 99


Q ss_pred             HhcCCCHHHHHHHHHhhCCC
Q 006634          157 LEMGFSENQVSLAIEKFGSK  176 (637)
Q Consensus       157 ~~MGfseeEas~Ai~r~G~d  176 (637)
                      ..=||+-+.+..||+....+
T Consensus       137 ~rkGF~~~~I~~~l~~~~~~  156 (157)
T PRK00117        137 ARRGFSMDVIQRVLRNALDD  156 (157)
T ss_pred             HHCCCCHHHHHHHHHhhhcc
Confidence            99999999999999876654

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=88.68  E-value=0.71  Score=49.34  Aligned_cols=54  Identities=22%  Similarity=0.258  Sum_probs=42.9

Q ss_pred             ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      ..|..+...+-+|||+=||.|=++++..++|..  -|+++|||+.|.++-+.|-..
T Consensus       153 ~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~--~v~a~DiDp~Av~~a~~N~~~  206 (295)
T PF06325_consen  153 ELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAK--KVVAIDIDPLAVEAARENAEL  206 (295)
T ss_dssp             HHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBS--EEEEEESSCHHHHHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHH
Confidence            334444445679999999999999999999984  589999999999988877543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=88.57  E-value=1.6  Score=43.49  Aligned_cols=82  Identities=20%  Similarity=0.107  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||+.||.|..+.-+.++ +- -..|+++|+++......+.+....+... ..+..+|..+.-.        ..+.
T Consensus        72 ~~~~VLDiG~GsG~~~~~la~~~~~-~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~--------~~~~  142 (205)
T PRK13944         72 PGMKILEVGTGSGYQAAVCAEAIER-RGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE--------KHAP  142 (205)
T ss_pred             CCCEEEEECcCccHHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc--------cCCC
Confidence            3578999999999998777653 21 1247899999998776665554322111 1234566654221        1257


Q ss_pred             ccEEEEcCCCCCc
Q 006634          581 IDFVICQNSVPQI  593 (637)
Q Consensus       581 ~DLVIGGpPCQ~F  593 (637)
                      ||+|+-+..+..+
T Consensus       143 fD~Ii~~~~~~~~  155 (205)
T PRK13944        143 FDAIIVTAAASTI  155 (205)
T ss_pred             ccEEEEccCcchh
Confidence            8998877665444

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=88.42  E-value=1.6  Score=45.28  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=47.7

Q ss_pred             hhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEE
Q 006634          454 EHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVI  532 (637)
Q Consensus       454 ~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi~~k~vv  532 (637)
                      .-.|+|||.-.-|+.  ++..+...               ++.|.  .+.+.+|||+=||.|+....+.+ .|.   .|+
T Consensus        22 ~~~e~~~g~~~~~~g--g~~~~~~~---------------l~~l~--l~~~~~VLDiGcG~G~~a~~la~~~~~---~v~   79 (263)
T PTZ00098         22 KAYEFIFGEDYISSG--GIEATTKI---------------LSDIE--LNENSKVLDIGSGLGGGCKYINEKYGA---HVH   79 (263)
T ss_pred             hhHHHHhCCCCCCCC--chHHHHHH---------------HHhCC--CCCCCEEEEEcCCCChhhHHHHhhcCC---EEE
Confidence            345888887666665  45444333               22221  23467899999999998877754 344   378


Q ss_pred             EeecCHHHHHHHHHH
Q 006634          533 SIETSETNRRILKRW  547 (637)
Q Consensus       533 aVEid~~a~~t~r~~  547 (637)
                      ++|+++......+..
T Consensus        80 giD~s~~~~~~a~~~   94 (263)
T PTZ00098         80 GVDICEKMVNIAKLR   94 (263)
T ss_pred             EEECCHHHHHHHHHH
Confidence            999999887766654

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.41  E-value=2  Score=47.60  Aligned_cols=109  Identities=19%  Similarity=0.190  Sum_probs=69.8

Q ss_pred             ccccCCCCCcccccCCCCChHHH--HHHHcC------------------------------------CceeeEEEeecCH
Q 006634          497 LKSMFPGGLTMLSVFSGIGGAEV--TLHRLG------------------------------------IKLKGVISIETSE  538 (637)
Q Consensus       497 LK~~f~~~l~vLsLFSGiGGlsl--GL~~aG------------------------------------i~~k~vvaVEid~  538 (637)
                      |-.+.+. -.++|-|||.|.+-+  |+-.+.                                    -++..++++|||+
T Consensus       186 lagw~~~-~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~  264 (381)
T COG0116         186 LAGWKPD-EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP  264 (381)
T ss_pred             HcCCCCC-CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence            3344443 579999999998743  332221                                    1222467999999


Q ss_pred             HHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCC
Q 006634          539 TNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDF  617 (637)
Q Consensus       539 ~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~  617 (637)
                      ...+.-+.|.......+.+ +...|++.+...        ++.+|+||+-||=                  |.|-|-+..
T Consensus       265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~--------~~~~gvvI~NPPY------------------GeRlg~~~~  318 (381)
T COG0116         265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP--------LEEYGVVISNPPY------------------GERLGSEAL  318 (381)
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC--------CCcCCEEEeCCCc------------------chhcCChhh
Confidence            9999998888766433222 356777777653        2478999988882                  224332222


Q ss_pred             CcchHHHHHHHHHHh
Q 006634          618 DFSLYYEFVRVVQRV  632 (637)
Q Consensus       618 Rs~LF~Ey~RIV~~v  632 (637)
                      -..||-+|.+.++..
T Consensus       319 v~~LY~~fg~~lk~~  333 (381)
T COG0116         319 VAKLYREFGRTLKRL  333 (381)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            345899999888543

>PLN02244 tocopherol O-methyltransferase

Probab=88.36  E-value=1.3  Score=47.64  Aligned_cols=73  Identities=23%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||+-||.|++...|.+. |.   .|++||+++...+..+......+.. ...++.+|+.++.-        ..+.
T Consensus       118 ~~~~VLDiGCG~G~~~~~La~~~g~---~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~--------~~~~  186 (340)
T PLN02244        118 RPKRIVDVGCGIGGSSRYLARKYGA---NVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF--------EDGQ  186 (340)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC--------CCCC
Confidence            4578999999999999888775 54   3689999999877665543322111 12244566655431        1245


Q ss_pred             ccEEEE
Q 006634          581 IDFVIC  586 (637)
Q Consensus       581 ~DLVIG  586 (637)
                      ||+|+.
T Consensus       187 FD~V~s  192 (340)
T PLN02244        187 FDLVWS  192 (340)
T ss_pred             ccEEEE
Confidence            777765

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=88.26  E-value=1.5  Score=44.05  Aligned_cols=88  Identities=16%  Similarity=0.113  Sum_probs=53.3

Q ss_pred             hhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006634          490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  569 (637)
Q Consensus       490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~  569 (637)
                      ++..+..|.  ...+-+|||+-||.|.++.-+.++.-.-..|+++|+++...+..+.++...+.....+..+|..+... 
T Consensus        65 ~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~-  141 (212)
T PRK13942         65 VAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE-  141 (212)
T ss_pred             HHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-
Confidence            344444443  23468999999999999977765421112478999999998888776654322112234555543211 


Q ss_pred             hHHHhhhccCCccEEEEc
Q 006634          570 KFESLIHKLGSIDFVICQ  587 (637)
Q Consensus       570 ~Ie~l~~~~g~~DLVIGG  587 (637)
                             ..+.||+|+-+
T Consensus       142 -------~~~~fD~I~~~  152 (212)
T PRK13942        142 -------ENAPYDRIYVT  152 (212)
T ss_pred             -------cCCCcCEEEEC
Confidence                   12467887643

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=88.16  E-value=1.1  Score=38.93  Aligned_cols=70  Identities=24%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             ccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          507 MLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       507 vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      ||||=||.|-....|.+.   |.. ..+.++|+++.+....+++....+. ...+++.|++++..        ..+.+|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~-~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~--------~~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPS-SRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPF--------SDGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHH--------HSSSEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhccc-ceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcc--------cCCCeeE
Confidence            689999999999998876   432 3578999999998888776643322 33457889877532        2358999


Q ss_pred             EEE
Q 006634          584 VIC  586 (637)
Q Consensus       584 VIG  586 (637)
                      |+.
T Consensus        71 v~~   73 (101)
T PF13649_consen   71 VVC   73 (101)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            997

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=87.95  E-value=2.1  Score=42.65  Aligned_cols=44  Identities=30%  Similarity=0.278  Sum_probs=35.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .+.+||++.||.|.+...+.+.|..   ++++|+++......+....
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~~   91 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGAD---VTGIDASEENIEVARLHAL   91 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCe---EEEEcCCHHHHHHHHHHHH
Confidence            4678999999999999999888853   6889999998776665443

>PRK10742 putative methyltransferase; Provisional

Probab=87.71  E-value=2  Score=45.17  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=55.9

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCCcc
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+|||+|+|-|...+=+-.+|..   |+.||-++.....++.......+...+-  +...|+-+..+.+.-+-.....||
T Consensus        90 p~VLD~TAGlG~Da~~las~G~~---V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fD  166 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQ  166 (250)
T ss_pred             CEEEECCCCccHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCc
Confidence            48999999999998888888974   7899999999999987665422211111  112344444444432222224699


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|.-=||=.
T Consensus       167 VVYlDPMfp  175 (250)
T PRK10742        167 VVYLDPMFP  175 (250)
T ss_pred             EEEECCCCC
Confidence            999998744

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=87.44  E-value=0.92  Score=46.41  Aligned_cols=93  Identities=14%  Similarity=0.133  Sum_probs=57.4

Q ss_pred             hhhhhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccC
Q 006634          490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALT  567 (637)
Q Consensus       490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt  567 (637)
                      .+.+|..|-...+ .-+||++.+|+|.-.+.+.++ +-. -.++++|+++.+.+..+.+|...+... ..++.+|..++ 
T Consensus        56 ~g~~L~~l~~~~~-~~~vLEiGt~~G~s~l~la~~~~~~-g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~-  132 (234)
T PLN02781         56 EGLFLSMLVKIMN-AKNTLEIGVFTGYSLLTTALALPED-GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSA-  132 (234)
T ss_pred             HHHHHHHHHHHhC-CCEEEEecCcccHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHH-
Confidence            3445555555443 568999999999866655543 211 147899999999999999997664321 12345665432 


Q ss_pred             hhhHHHhhhc--cCCccEEEEcC
Q 006634          568 TKKFESLIHK--LGSIDFVICQN  588 (637)
Q Consensus       568 ~~~Ie~l~~~--~g~~DLVIGGp  588 (637)
                         +..+...  .+.||+|.-..
T Consensus       133 ---L~~l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        133 ---LDQLLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             ---HHHHHhCCCCCCCCEEEECC
Confidence               2222222  25789887553

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=87.29  E-value=1.3  Score=50.18  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.||=+..+..+ +-. -.++|+|+++.-.++++.+....+.....+...|.+.+..     .  ..+.|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~-g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~-----~--~~~~f  184 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQ-GAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGA-----A--LPETF  184 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhh-----h--chhhc
Confidence            4678999999999999887653 111 1488999999998899887665432222233445444321     1  12469


Q ss_pred             cEEEEcCCCCCcCc
Q 006634          582 DFVICQNSVPQIPN  595 (637)
Q Consensus       582 DLVIGGpPCQ~FS~  595 (637)
                      |.|+==+||.+...
T Consensus       185 D~ILvDaPCSG~G~  198 (470)
T PRK11933        185 DAILLDAPCSGEGT  198 (470)
T ss_pred             CeEEEcCCCCCCcc
Confidence            99999999998875

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=87.09  E-value=1  Score=44.15  Aligned_cols=77  Identities=14%  Similarity=0.074  Sum_probs=52.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +.+||||-||.|.+...+.+.+... .++++|+++...+..+....    ....++..|+.++..        ..+.+|+
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~-~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~--------~~~~fD~  101 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQA-EFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL--------EDSSFDL  101 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCC-cEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC--------CCCceeE
Confidence            4789999999999999999988543 47899999998776654332    111234566655431        1246899


Q ss_pred             EEEcCCCCCc
Q 006634          584 VICQNSVPQI  593 (637)
Q Consensus       584 VIGGpPCQ~F  593 (637)
                      |+....++.+
T Consensus       102 vi~~~~l~~~  111 (240)
T TIGR02072       102 IVSNLALQWC  111 (240)
T ss_pred             EEEhhhhhhc
Confidence            9977665543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=87.00  E-value=1.5  Score=44.40  Aligned_cols=86  Identities=15%  Similarity=0.083  Sum_probs=55.1

Q ss_pred             cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006634          486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  565 (637)
Q Consensus       486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~  565 (637)
                      |......+++.|+.  ...-+|||+=||.|.++..|...|.   .++++|+++...+..+...     ....++.+|+..
T Consensus        27 q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~~D~s~~~l~~a~~~~-----~~~~~~~~d~~~   96 (251)
T PRK10258         27 QRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRERGS---QVTALDLSPPMLAQARQKD-----AADHYLAGDIES   96 (251)
T ss_pred             HHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhC-----CCCCEEEcCccc
Confidence            33333344455543  2346799999999999988888774   4789999999877665421     112245677765


Q ss_pred             cChhhHHHhhhccCCccEEEEcCC
Q 006634          566 LTTKKFESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       566 Lt~~~Ie~l~~~~g~~DLVIGGpP  589 (637)
                      +.-        ..+.||+|+...+
T Consensus        97 ~~~--------~~~~fD~V~s~~~  112 (251)
T PRK10258         97 LPL--------ATATFDLAWSNLA  112 (251)
T ss_pred             CcC--------CCCcEEEEEECch
Confidence            431        1236898886543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=86.95  E-value=1.4  Score=46.00  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=36.1

Q ss_pred             cccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          506 TMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       506 ~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      +|||+=||.|...+-|.+.|++   |+++|+++.+....+.....
T Consensus       123 ~vLDlGcG~G~~~~~la~~g~~---V~avD~s~~ai~~~~~~~~~  164 (287)
T PRK12335        123 KALDLGCGQGRNSLYLALLGFD---VTAVDINQQSLENLQEIAEK  164 (287)
T ss_pred             CEEEeCCCCCHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHH
Confidence            8999999999999999888974   68999999998877765543

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=86.77  E-value=1.3  Score=44.85  Aligned_cols=40  Identities=23%  Similarity=0.291  Sum_probs=35.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHH
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  544 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~  544 (637)
                      +.+-+||++.||.|--.+-|.+.|+.   |++||+++.++..+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~---V~gvD~S~~Ai~~~   72 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHR---VLGVELSEIAVEQF   72 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCe---EEEEeCCHHHHHHH
Confidence            45679999999999999999999985   78999999998854

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=85.69  E-value=2  Score=50.91  Aligned_cols=54  Identities=11%  Similarity=0.143  Sum_probs=37.0

Q ss_pred             eEEEeecCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634          530 GVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       530 ~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  589 (637)
                      .++++|+|+.+...-+.+....+.... .+..+|+.++....      ..+.+|+|+.=||
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~------~~~~~d~IvtNPP  312 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPL------PKGPTGLVISNPP  312 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhccccc------ccCCCCEEEECCC
Confidence            378999999999999988876543221 24567777654311      1245899998887

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=85.65  E-value=0.96  Score=49.87  Aligned_cols=62  Identities=23%  Similarity=0.306  Sum_probs=43.1

Q ss_pred             hcccchhhhhccccccCCCCCcccccCCCCC--hHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          485 FQTDTLGYHLSVLKSMFPGGLTMLSVFSGIG--GAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       485 fqvdtv~~~lsvLK~~f~~~l~vLsLFSGiG--GlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .++-.+. .+++++.-+..++++||-+||+|  |+.++.+-.|.  ..|+++|+|+.+.+.++.+-+
T Consensus        32 lsvl~~~-~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~--~~v~~NDi~~~a~~~i~~N~~   95 (377)
T PF02005_consen   32 LSVLAIR-YLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGV--DKVTANDISPEAVELIKRNLE   95 (377)
T ss_dssp             HHHHH----HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSE--CEEEEEES-HHHHHHHHHHHH
T ss_pred             eeehhHH-HHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCC--CEEEEecCCHHHHHHHHHhHh
Confidence            4444444 45666655556799999999999  99999997776  468999999999999998754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK05785 hypothetical protein; Provisional

Probab=85.64  E-value=1.8  Score=43.94  Aligned_cols=73  Identities=16%  Similarity=0.183  Sum_probs=49.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+||||-||.|-+...|.+.+ . ..++++|+++...+.-+.    .   .. .+.+|..++.-        ..+.||
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~-~-~~v~gvD~S~~Ml~~a~~----~---~~-~~~~d~~~lp~--------~d~sfD  112 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF-K-YYVVALDYAENMLKMNLV----A---DD-KVVGSFEALPF--------RDKSFD  112 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc-C-CEEEEECCCHHHHHHHHh----c---cc-eEEechhhCCC--------CCCCEE
Confidence            35789999999999988888873 1 247899999998776542    1   11 23566655431        125799


Q ss_pred             EEEEcCCCCCc
Q 006634          583 FVICQNSVPQI  593 (637)
Q Consensus       583 LVIGGpPCQ~F  593 (637)
                      +|+.+.-.+.+
T Consensus       113 ~v~~~~~l~~~  123 (226)
T PRK05785        113 VVMSSFALHAS  123 (226)
T ss_pred             EEEecChhhcc
Confidence            99987654433

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=85.61  E-value=2.4  Score=41.27  Aligned_cols=74  Identities=22%  Similarity=0.163  Sum_probs=49.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...+.+.+-....++++|+++......+..+. . .....+..+|+.++..        ..+.+|
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~-~-~~~i~~~~~d~~~~~~--------~~~~~D  108 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE-L-PLNIEFIQADAEALPF--------EDNSFD  108 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc-c-CCCceEEecchhcCCC--------CCCcEE
Confidence            46799999999999999888877431257899999988777766442 1 1112244566665431        123577


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus       109 ~i~~  112 (223)
T TIGR01934       109 AVTI  112 (223)
T ss_pred             EEEE
Confidence            7764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=85.21  E-value=1.8  Score=45.74  Aligned_cols=86  Identities=20%  Similarity=0.197  Sum_probs=59.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+|||+.||.||=+..+..+-..--.++|+|+++.-...++.+..+.+.....+...|-+++.....      ...||.
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------~~~fd~  159 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ESKFDR  159 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------TTTEEE
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------ccccch
Confidence            56699999999999887776544223588999999999999887665543322222244443332211      125999


Q ss_pred             EEEcCCCCCcCc
Q 006634          584 VICQNSVPQIPN  595 (637)
Q Consensus       584 VIGGpPCQ~FS~  595 (637)
                      |+==+||.+...
T Consensus       160 VlvDaPCSg~G~  171 (283)
T PF01189_consen  160 VLVDAPCSGLGT  171 (283)
T ss_dssp             EEEECSCCCGGG
T ss_pred             hhcCCCccchhh
Confidence            999999999864

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=85.12  E-value=2.1  Score=46.84  Aligned_cols=77  Identities=25%  Similarity=0.251  Sum_probs=50.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccc-ccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQI-EDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~-~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .|-.|+|=|||.||+-+-.--.|..   ++++||+....+=-+.|....+-.+-.+.. .|.+++.   +.+     ..|
T Consensus       197 ~G~~vlDPFcGTGgiLiEagl~G~~---viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp---l~~-----~~v  265 (347)
T COG1041         197 RGELVLDPFCGTGGILIEAGLMGAR---VIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP---LRD-----NSV  265 (347)
T ss_pred             cCCEeecCcCCccHHHHhhhhcCce---EeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC---CCC-----Ccc
Confidence            3567999999999998888888874   678899998766555554332211221222 2666554   211     149


Q ss_pred             cEEEEcCCC
Q 006634          582 DFVICQNSV  590 (637)
Q Consensus       582 DLVIGGpPC  590 (637)
                      |-|+.=||=
T Consensus       266 daIatDPPY  274 (347)
T COG1041         266 DAIATDPPY  274 (347)
T ss_pred             ceEEecCCC
Confidence            999999983

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=85.10  E-value=0.63  Score=46.93  Aligned_cols=53  Identities=21%  Similarity=0.227  Sum_probs=34.7

Q ss_pred             hccccccCC--CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          494 LSVLKSMFP--GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       494 lsvLK~~f~--~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      +..+.+++|  ..-+++|+|||.|+..+.+...+   +.++..|+++.....++....
T Consensus         9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~---~~vi~ND~~~~l~~~~~~~l~   63 (260)
T PF02086_consen    9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG---KRVIINDINPDLINFWKAVLK   63 (260)
T ss_dssp             HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S---SEEEEEES-HHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc---cceeeeechHHHHHHHHHHHh
Confidence            334455566  47889999999999988886644   467899999998887774443

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones]

Probab=85.09  E-value=2.9  Score=49.15  Aligned_cols=95  Identities=23%  Similarity=0.179  Sum_probs=64.6

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK   80 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~   80 (637)
                      ||||++--.||+==.|-.++++-.+-|+..-            +|.+++|.-.-.+..-+.+..   +.       ..+-
T Consensus       581 MGFp~eac~rAly~tgN~~aEaA~NWl~~HM------------dDpd~~~p~vvp~~~~~a~~~---~~-------~e~~  638 (763)
T KOG0944|consen  581 MGFPEEACRRALYYTGNSGAEAASNWLMEHM------------DDPDIDDPFVVPGNSPKADAR---EV-------DEES  638 (763)
T ss_pred             cCCCHHHHHHHHhhhcCccHHHHHHHHHHhc------------cCcccCCceecCCCCCccccC---CC-------ChhH
Confidence            9999999999999999999998888887763            223333321111000011100   11       1234


Q ss_pred             HHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           81 RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        81 ~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      +..++.|||++..+.+|+...--  .|+..+|.|+++--
T Consensus       639 v~si~smGf~~~qa~~aL~~~n~--nveravDWif~h~d  675 (763)
T KOG0944|consen  639 VASIVSMGFSRNQAIKALKATNN--NVERAVDWIFSHMD  675 (763)
T ss_pred             heeeeeecCcHHHHHHHHHhcCc--cHHHHHHHHHhccc
Confidence            56789999999999999988754  47999999998743

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=85.07  E-value=2.2  Score=42.08  Aligned_cols=43  Identities=37%  Similarity=0.359  Sum_probs=35.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  548 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~  548 (637)
                      .+.+|||+-||.|.+...+.+.|..   ++++|+++......+...
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~---v~~iD~s~~~~~~a~~~~   87 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGAN---VTGIDASEENIEVAKLHA   87 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHHH
Confidence            3689999999999999988888763   789999998877666544

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=84.56  E-value=2.7  Score=45.43  Aligned_cols=77  Identities=19%  Similarity=0.160  Sum_probs=46.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.++.-+.++.-.-..|+++|+++......+......+.....++.+|..+...        ..+.+|
T Consensus        80 ~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~--------~~~~fD  151 (322)
T PRK13943         80 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP--------EFAPYD  151 (322)
T ss_pred             CCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--------ccCCcc
Confidence            457899999999999888776431111378999999876665554433222222334556543211        123577


Q ss_pred             EEEEc
Q 006634          583 FVICQ  587 (637)
Q Consensus       583 LVIGG  587 (637)
                      +|+-+
T Consensus       152 ~Ii~~  156 (322)
T PRK13943        152 VIFVT  156 (322)
T ss_pred             EEEEC
Confidence            77653

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=84.43  E-value=3.3  Score=42.96  Aligned_cols=77  Identities=17%  Similarity=0.076  Sum_probs=48.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhh---hcCCCCCccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWE---SSGQTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~---~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|||+-||.|.+...+.+. |-. ..++++|+++...+..+....   ........++.+|+.++.-        ..
T Consensus        73 ~~~~VLDlGcGtG~~~~~la~~~~~~-~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~--------~~  143 (261)
T PLN02233         73 MGDRVLDLCCGSGDLAFLLSEKVGSD-GKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPF--------DD  143 (261)
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCC--------CC
Confidence            4678999999999998877653 422 247899999998777654221   0011112245667765541        12


Q ss_pred             CCccEEEEcC
Q 006634          579 GSIDFVICQN  588 (637)
Q Consensus       579 g~~DLVIGGp  588 (637)
                      +.||+|+.+.
T Consensus       144 ~sfD~V~~~~  153 (261)
T PLN02233        144 CYFDAITMGY  153 (261)
T ss_pred             CCEeEEEEec
Confidence            4699998654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=84.10  E-value=2.2  Score=43.33  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=48.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||+=||.|.+...|.+.. +-..+++||+++...+..+....     ...++.+|+.++..         ...+|
T Consensus        31 ~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~~-----~~~~~~~d~~~~~~---------~~~fD   95 (258)
T PRK01683         31 NPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRLP-----DCQFVEADIASWQP---------PQALD   95 (258)
T ss_pred             CCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhCC-----CCeEEECchhccCC---------CCCcc
Confidence            46789999999999998887653 22357899999998877765321     12244566654421         12577


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+.....+
T Consensus        96 ~v~~~~~l~  104 (258)
T PRK01683         96 LIFANASLQ  104 (258)
T ss_pred             EEEEccChh
Confidence            777665443

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=83.95  E-value=1.2  Score=43.10  Aligned_cols=39  Identities=33%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  544 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~  544 (637)
                      .+=.|||.|+|.|.-.++..++|-+   .+++|+++..+++.
T Consensus       191 ~gdiVlDpF~GSGTT~~aa~~l~R~---~ig~E~~~~y~~~a  229 (231)
T PF01555_consen  191 PGDIVLDPFAGSGTTAVAAEELGRR---YIGIEIDEEYCEIA  229 (231)
T ss_dssp             TT-EEEETT-TTTHHHHHHHHTT-E---EEEEESSHHHHHHH
T ss_pred             cceeeehhhhccChHHHHHHHcCCe---EEEEeCCHHHHHHh
Confidence            4567999999999999999999954   68999999987654

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=83.91  E-value=3.2  Score=40.83  Aligned_cols=75  Identities=21%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      +.+|||+-||.|++...+.+.+-....++++|+++......+.++...+.. ...+...|+.++..        ..+.+|
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D  123 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF--------PDNSFD  123 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--------CCCCcc
Confidence            578999999999999988887621235789999998877777665432111 12234456654321        124678


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus       124 ~I~~  127 (239)
T PRK00216        124 AVTI  127 (239)
T ss_pred             EEEE
Confidence            8764

>TIGR00477 tehB tellurite resistance protein TehB

Probab=83.86  E-value=3.6  Score=40.59  Aligned_cols=43  Identities=14%  Similarity=0.074  Sum_probs=36.2

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      +.+|||+=||.|-.++-|.+.|..   |+++|+++.+.+..+....
T Consensus        31 ~~~vLDiGcG~G~~a~~la~~g~~---V~~iD~s~~~l~~a~~~~~   73 (195)
T TIGR00477        31 PCKTLDLGCGQGRNSLYLSLAGYD---VRAWDHNPASIASVLDMKA   73 (195)
T ss_pred             CCcEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHH
Confidence            468999999999999999888863   7899999998887766543

Part of a tellurite-reducing operon tehA and tehB

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=83.48  E-value=2.6  Score=42.85  Aligned_cols=40  Identities=25%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHH
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL  544 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~  544 (637)
                      +.+-+||++.||.|--.+-|.+.|+.   |++||+++.|++.+
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~---V~avD~s~~Ai~~~   75 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHE---VLGVELSELAVEQF   75 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCe---EEEEccCHHHHHHH
Confidence            34579999999999999999999985   78999999998764

>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction

Probab=83.42  E-value=1.6  Score=34.23  Aligned_cols=33  Identities=21%  Similarity=0.383  Sum_probs=26.5

Q ss_pred             hHHHHHhcCCCHHHHHHHHHhh--CCCCChhhhhh
Q 006634          152 ITLQLLEMGFSENQVSLAIEKF--GSKTPISELAD  184 (637)
Q Consensus       152 k~~~L~~MGfseeEas~Ai~r~--G~da~i~eLvD  184 (637)
                      -+..|++.||++.||..|+.+.  +++.++++++-
T Consensus         6 ~~~AL~~LGy~~~e~~~av~~~~~~~~~~~e~~ik   40 (47)
T PF07499_consen    6 ALEALISLGYSKAEAQKAVSKLLEKPGMDVEELIK   40 (47)
T ss_dssp             HHHHHHHTTS-HHHHHHHHHHHHHSTTS-HHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhhcCCCCCHHHHHH
Confidence            3458999999999999999999  88888888753

The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.

>PRK14135 recX recombination regulator RecX; Provisional

Probab=83.03  E-value=13  Score=38.31  Aligned_cols=82  Identities=18%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh--hhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA--QISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL  154 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~--q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~  154 (637)
                      ..+...+|..-||+.+.|..||+++..+...++-.+.+...  ....... .              ..+   .....|+.
T Consensus       178 k~Ki~~~L~rkGf~~~~I~~~l~~~~~e~d~~~e~e~l~~~~~k~~~k~~-~--------------~~~---~k~k~K~~  239 (263)
T PRK14135        178 KQKIIQSLLTKGFSYEVIKAALEELDLEQDEEEEQELLQKELEKAYRKYS-K--------------YDG---YELKQKLK  239 (263)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHHHh-c--------------CCH---HHHHHHHH
Confidence            34566889999999999999999997543222222222211  1111111 0              000   11235665


Q ss_pred             -HHHhcCCCHHHHHHHHHhhCCC
Q 006634          155 -QLLEMGFSENQVSLAIEKFGSK  176 (637)
Q Consensus       155 -~L~~MGfseeEas~Ai~r~G~d  176 (637)
                       +|..=||+-+.+..+|..+..+
T Consensus       240 ~~L~rrGF~~~~I~~~l~~~~~~  262 (263)
T PRK14135        240 QALYRKGFSYDDIDSFLREYGIE  262 (263)
T ss_pred             HHHHHCCCCHHHHHHHHHHhccC
Confidence             9999999999999999887543

>PRK00811 spermidine synthase; Provisional

Probab=82.95  E-value=3.4  Score=43.47  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=53.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLI  575 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI~~Lt~~~Ie~l~  575 (637)
                      +++-+||+|-+|.|++..-+.+. +.  +.|+.||+|+...+..+.|+...+     .+...++.+|..+.-.       
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~--~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~-------  145 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSV--EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVA-------  145 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCC--CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHh-------
Confidence            45678999999999998766554 54  468899999999999998875321     1122244566544211       


Q ss_pred             hccCCccEEEEcC
Q 006634          576 HKLGSIDFVICQN  588 (637)
Q Consensus       576 ~~~g~~DLVIGGp  588 (637)
                      ...+.+|+|+.-.
T Consensus       146 ~~~~~yDvIi~D~  158 (283)
T PRK00811        146 ETENSFDVIIVDS  158 (283)
T ss_pred             hCCCcccEEEECC
Confidence            1235799999754

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=82.51  E-value=3.9  Score=44.31  Aligned_cols=81  Identities=15%  Similarity=0.231  Sum_probs=49.2

Q ss_pred             CCCcccccCCCCChHHHHHH--HcCCceeeEEEeecCHHHHHHHHHHhhhc-CCCCCc--cccccccccChhhHHHhhhc
Q 006634          503 GGLTMLSVFSGIGGAEVTLH--RLGIKLKGVISIETSETNRRILKRWWESS-GQTGEL--VQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~--~aGi~~k~vvaVEid~~a~~t~r~~~~~t-n~~g~l--~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      .+.++|||=||+|++..-+-  .-|.   .++++|||+.+...-+.+-... +-.+.+  +...|...+-    ..+...
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~---~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~----~~i~~~  186 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGW---RFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIF----KGIIHK  186 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCC---EEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhh----hccccc
Confidence            45889999999998865443  3354   3689999999999888766543 111211  1112222211    111112


Q ss_pred             cCCccEEEEcCCC
Q 006634          578 LGSIDFVICQNSV  590 (637)
Q Consensus       578 ~g~~DLVIGGpPC  590 (637)
                      .+.||+|+.=||=
T Consensus       187 ~~~fDlivcNPPf  199 (321)
T PRK11727        187 NERFDATLCNPPF  199 (321)
T ss_pred             CCceEEEEeCCCC
Confidence            3579999999883

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=82.00  E-value=4  Score=42.56  Aligned_cols=83  Identities=18%  Similarity=0.176  Sum_probs=53.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .|.+|||+-||.|=+.+.+.+..=.. -|+++|+++.-.++-+.-..+.+..+.-++.+|..+|.=        .-..||
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g~g-~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf--------~D~sFD  121 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVGTG-EVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF--------PDNSFD  121 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCc-eEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC--------CCCccC
Confidence            58999999999999999887643133 468999999987766653332211112234566655542        114688


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+-++==+++.
T Consensus       122 ~vt~~fglrnv~  133 (238)
T COG2226         122 AVTISFGLRNVT  133 (238)
T ss_pred             EEEeeehhhcCC
Confidence            888776444443

>PLN02672 methionine S-methyltransferase

Probab=81.93  E-value=2.5  Score=52.46  Aligned_cols=46  Identities=9%  Similarity=0.005  Sum_probs=37.4

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      +.+|+||-||.|-+.+.+...+=. ..++++||++.+....+.|...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~-~~v~avDis~~Al~~A~~Na~~  164 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLP-SKVYGLDINPRAVKVAWINLYL  164 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHH
Confidence            358999999999999998776422 3578999999999988887653

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=81.84  E-value=2.4  Score=41.71  Aligned_cols=83  Identities=18%  Similarity=0.078  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ...++|||=||.|.+.+.+.+.. +-..++++|+++......++.....+.....++.+|+.++....     ...+.+|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~-----~~~~~~d   89 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKF-----FPDGSLS   89 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhh-----CCCCcee
Confidence            34579999999999998888764 22357899999987766655544332222234556765542111     1124689


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      .|+--+|..
T Consensus        90 ~v~~~~pdp   98 (194)
T TIGR00091        90 KVFLNFPDP   98 (194)
T ss_pred             EEEEECCCc
Confidence            998877643

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=81.63  E-value=2.9  Score=42.93  Aligned_cols=77  Identities=22%  Similarity=0.246  Sum_probs=44.4

Q ss_pred             CCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|=++..+.+ +|-.. -|+++|+++.-.+.-+.-..+.......++.+|..++.-.        -..|
T Consensus        47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~-~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~--------d~sf  117 (233)
T PF01209_consen   47 PGDRVLDVACGTGDVTRELARRVGPNG-KVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP--------DNSF  117 (233)
T ss_dssp             S--EEEEET-TTSHHHHHHGGGSS----EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S---------TT-E
T ss_pred             CCCEEEEeCCChHHHHHHHHHHCCCcc-EEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC--------CCce
Confidence            467999999999999888765 45332 4789999999887776543322222222456777776532        1469


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+.++
T Consensus       118 D~v~~~f  124 (233)
T PF01209_consen  118 DAVTCSF  124 (233)
T ss_dssp             EEEEEES
T ss_pred             eEEEHHh
Confidence            9998766

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=81.15  E-value=3.5  Score=40.14  Aligned_cols=74  Identities=14%  Similarity=0.052  Sum_probs=45.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh--ccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH--KLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~--~~g  579 (637)
                      +.+-+|||+=||.||++..+.+....-..++++|+++..    +       ..+..++..|+.+...  ++.+..  ..+
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~-------~~~i~~~~~d~~~~~~--~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P-------IENVDFIRGDFTDEEV--LNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c-------CCCceEEEeeCCChhH--HHHHHHHhCCC
Confidence            346789999999999998877654322347899999853    1       1122244567765321  222211  124


Q ss_pred             CccEEEEcC
Q 006634          580 SIDFVICQN  588 (637)
Q Consensus       580 ~~DLVIGGp  588 (637)
                      .+|+|+..+
T Consensus        98 ~~D~V~~~~  106 (188)
T TIGR00438        98 KVDVVMSDA  106 (188)
T ss_pred             CccEEEcCC
Confidence            699999643

>PRK14135 recX recombination regulator RecX; Provisional

Probab=81.06  E-value=27  Score=36.12  Aligned_cols=82  Identities=15%  Similarity=0.175  Sum_probs=51.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchhhhHH-HH
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTMEITL-QL  156 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~~k~~-~L  156 (637)
                      -+....|...||+.+.|..||+++-++.-++.+..+ ... .......               .+.   ...-.|+. +|
T Consensus       126 ~~I~~kL~~kGi~~~~Ie~~l~~l~~~~~~d~a~~~-~~k-~~~~~~~---------------~~~---~~~k~Ki~~~L  185 (263)
T PRK14135        126 RVIKQKLLQKGIEDEIIEEALSEYTEEDQIEVAQKL-AEK-LLKKYQK---------------LPF---KALKQKIIQSL  185 (263)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHhCChhhHHHHHHHH-HHH-HHHHhcC---------------CCH---HHHHHHHHHHH
Confidence            356678999999999999999999554433322211 111 1111000               000   01224554 89


Q ss_pred             HhcCCCHHHHHHHHHhhCCCCCh
Q 006634          157 LEMGFSENQVSLAIEKFGSKTPI  179 (637)
Q Consensus       157 ~~MGfseeEas~Ai~r~G~da~i  179 (637)
                      ..-||+.+.+..|++.+..+...
T Consensus       186 ~rkGf~~~~I~~~l~~~~~e~d~  208 (263)
T PRK14135        186 LTKGFSYEVIKAALEELDLEQDE  208 (263)
T ss_pred             HhCCCCHHHHHHHHHHcccCCCh
Confidence            99999999999999999765433

>TIGR00417 speE spermidine synthase

Probab=80.78  E-value=4.9  Score=41.83  Aligned_cols=47  Identities=15%  Similarity=0.186  Sum_probs=36.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      ++-+||+|.+|.|++...+.+.+ ....+..||+|+...+..+.++..
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~  118 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPS  118 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHh
Confidence            44599999999999887776654 235688999999998888887643

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK08317 hypothetical protein; Provisional

Probab=80.76  E-value=5.5  Score=38.81  Aligned_cols=45  Identities=27%  Similarity=0.184  Sum_probs=33.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  547 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~  547 (637)
                      .+.+|||+-||.|++...+.+...+...++++|+++......+..
T Consensus        19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~   63 (241)
T PRK08317         19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER   63 (241)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence            467899999999999888876532223578999999876655543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=80.62  E-value=4.3  Score=41.01  Aligned_cols=42  Identities=21%  Similarity=0.206  Sum_probs=35.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  548 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~  548 (637)
                      +-++|||=||-|.=++=|.+.|+.   |.|+|+++.+...++..-
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~G~~---VtAvD~s~~al~~l~~~a   72 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQGFD---VTAVDISPVALEKLQRLA   72 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHTT-E---EEEEESSHHHHHHHHHHH
T ss_pred             CCcEEEcCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHHH
Confidence            468999999999999999999995   789999999988777643

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=80.55  E-value=2.5  Score=40.75  Aligned_cols=81  Identities=19%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhh-ccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIH-KLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~-~~Ie~l~~-~~g~  580 (637)
                      .+.+||||-|+.||++..+.+.+-.-..|++||+.+..           ..++...+.+||.+... +.|..... ..+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------PLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------cccceeeeecccchhhHHHhhhhhccccccC
Confidence            45999999999999998888877334568999998772           12233456788866533 22333222 1258


Q ss_pred             ccEEE--EcCCCCCcC
Q 006634          581 IDFVI--CQNSVPQIP  594 (637)
Q Consensus       581 ~DLVI--GGpPCQ~FS  594 (637)
                      +|+|+  |+|+|++..
T Consensus        92 ~dlv~~D~~~~~~g~~  107 (181)
T PF01728_consen   92 FDLVLSDMAPNVSGDR  107 (181)
T ss_dssp             ESEEEE-------SSH
T ss_pred             cceeccccccCCCCch
Confidence            99998  556777653

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=80.23  E-value=2.5  Score=47.72  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=51.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcccccchh--hhHHHH
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDETLYGTM--EITLQL  156 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~~~~~~--~k~~~L  156 (637)
                      .-+..|++|||..+.|..|+.+.-.+  +..-||.+-..+.          .+.        ..-..+....  .++..|
T Consensus       377 rs~~rL~~mGyer~la~eaL~r~~Nd--i~~aldllq~esd----------el~--------~n~~~~p~~vd~~~la~L  436 (568)
T KOG2561|consen  377 RSLERLVSMGYERELAAEALRRNEND--IQKALDLLQDESD----------ELE--------SNKPKRPEQVDGISLAEL  436 (568)
T ss_pred             HHHHHHHhcchHhHHHHHHHHhccCc--HHHHHHhcCCcch----------hhh--------ccCCCCCcccchhhHHHH
Confidence            44668999999999999999997543  4455554422211          000        0000111222  345599


Q ss_pred             HhcCCCHHHHHHHHHhhCCC
Q 006634          157 LEMGFSENQVSLAIEKFGSK  176 (637)
Q Consensus       157 ~~MGfseeEas~Ai~r~G~d  176 (637)
                      +.|||.+--|..|++-.|..
T Consensus       437 v~mGF~e~~A~~ALe~~gnn  456 (568)
T KOG2561|consen  437 VSMGFEEGKARSALEAGGNN  456 (568)
T ss_pred             HHhccccchHHHHHHhcCCc
Confidence            99999999999999999986

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=80.09  E-value=6.7  Score=42.83  Aligned_cols=89  Identities=17%  Similarity=0.171  Sum_probs=59.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCc-eeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~-~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||+.|+.||=+.-+-++.-+ -.+|+|+|+++.-.+.++.+-..-+.....+...|=+.+..     .....+.|
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~-----~~~~~~~f  230 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAE-----LLPGGEKF  230 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccc-----cccccCcC
Confidence            3589999999999998887776643 23469999999988888876654432222233333332221     11111249


Q ss_pred             cEEEEcCCCCCcCcc
Q 006634          582 DFVICQNSVPQIPNS  596 (637)
Q Consensus       582 DLVIGGpPCQ~FS~s  596 (637)
                      |.|.-=+||.+....
T Consensus       231 D~iLlDaPCSg~G~i  245 (355)
T COG0144         231 DRILLDAPCSGTGVI  245 (355)
T ss_pred             cEEEECCCCCCCccc
Confidence            999999999998863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	637
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	6e-10
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	5e-05
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	2e-05
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 83.0 bits (204), Expect = 1e-16
 Identities = 102/695 (14%), Positives = 195/695 (28%), Gaps = 262/695 (37%)

Query: 87  MNFSVNEVDFA--------LDKLGKDAPVYELVDFITAAQISENFEKETDD---APHDND 135
           M+F   E  +          D    +    ++ D   +  +S   ++E D    +     
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI-LS---KEEIDHIIMSKDAVS 62

Query: 136 GTN------EDKSDETLYGTMEITLQ-----LLE-MGFSENQVSLAIEKFGSKTPISELA 183
           GT         K +E +   +E  L+     L+  +   + Q S+    +       E  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY------IEQR 116

Query: 184 DKIF-SGQIF--LDTPRSRSYDTVKV--------------------KT------------ 208
           D+++   Q+F   +  R + Y  ++                     KT            
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176

Query: 209 --------------EYCSPDVV--------SQSRKMNTSETSRGKRPKEEYFDDFSNSTS 246
                            SP+ V         Q     TS +      K            
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-IHSIQAELR 235

Query: 247 QFQHVDFQENRKGKRPKQESLDDSSSFLDSSWEEKVKPNSSRYGMQQAFNSNPCRSI--- 303
           +             +P +  L      L +    K            AFN + C+ +   
Sbjct: 236 RLLK---------SKPYENCLLV----LLNVQNAKA---------WNAFNLS-CKILLTT 272

Query: 304 -NKVVAQPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTT 362
             K V         + +  +    + + H   +L P+    +  S L +   YL   P  
Sbjct: 273 RFKQVT--------DFLSAATTTHISLDHHSMTLTPD----EVKSLLLK---YLDCRPQD 317

Query: 363 NRFHIPPEP----PMTIQDAIPHTKKWWPS-WDTRKHLSCINSGTSGISQLCERFEKLLR 417
               +P E     P  +   I  + +   + WD  KH++            C++   ++ 
Sbjct: 318 ----LPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVN------------CDKLTTIIE 360

Query: 418 DSRGVLSSQQQRD------ILHRSEK-----LNLVWVGAYKLGPVDPEHIE-------LI 459
            S  VL   + R       +   S       L+L+W   + +   D   +        L+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLV 417

Query: 460 LGYPSNHT-----------------QAAGNSLTARLESLRHCFQTDT------------- 489
              P   T                  A   S+       +  F +D              
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK-TFDSDDLIPPYLDQYFYSH 476

Query: 490 LGYHLSVLK-----SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRIL 544
           +G+HL  ++     ++F        VF       +    L  K+            R   
Sbjct: 477 IGHHLKNIEHPERMTLFR------MVF-------LDFRFLEQKI------------RHDS 511

Query: 545 KRWWESSGQTGELVQIEDIQALTTK---KFESLIHKLGSIDFVICQNSVPQIPNSK---- 597
             W  S      L Q++  +        K+E L++ +  +DF+        +  SK    
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI--LDFL--PKIEENLICSKYTDL 567

Query: 598 -QISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQR 631
            +I+      + AE +       +++ E  + VQR
Sbjct: 568 LRIA------LMAEDE-------AIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 50/293 (17%), Positives = 94/293 (32%), Gaps = 77/293 (26%)

Query: 4   SPSLVDKVIEEKGQDNVDLL----------LETLIE--YNALQESNSQSS-DSLDTLFGD 50
           +P     +I E  +D +             L T+IE   N L+ +  +   D L ++F  
Sbjct: 326 NP-RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVF-P 382

Query: 51  KDANSPPEISTMV---QPKEEPNVMDEGLHIEKRASLL-----MMNFSVNEVDFALDKLG 102
             A+ P  + +++     K +  V+   LH   + SL+         S+      L+   
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSLVEKQPKESTISIP--SIYLELKV 437

Query: 103 KDAPVYEL-VDFITAAQISENFEKETDDAPHDNDG----------TNEDKSDETLYGTME 151
           K    Y L    +    I + F+ + D  P   D            N +  +        
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMT----L 492

Query: 152 ITLQLLEMGFSENQV---SLAIEKFGSKTPISELAD-KIFSGQIFLDTPR---------- 197
             +  L+  F E ++   S A    GS      L   K +   I  + P+          
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 198 -SRSYDTVKVKTEYCSPDVVSQSRKMNTSETSRGKRPKEEYFDDFSNSTSQFQ 249
                +   + ++Y   D++ +   M            E  F++   +  Q Q
Sbjct: 551 FLPKIEENLICSKYT--DLL-RIALMA---------EDEAIFEE---AHKQVQ 588

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 28/133 (21%), Positives = 55/133 (41%), Gaps = 28/133 (21%)

Query: 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 564
           + +LS+F GI    + L  LGI++   I+ E  E +  +           G+++ + D++
Sbjct: 17  IRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-----HQGKIMYVGDVR 71

Query: 565 ALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFS 620
           ++T K  +    + G  D VI    C +          +S     +       L +    
Sbjct: 72  SVTQKHIQ----EWGPFDLVIGGSPCND----------LSIVNPARK-----GLYEGTGR 112

Query: 621 LYYEFVRVVQRVR 633
           L++EF R++   R
Sbjct: 113 LFFEFYRLLHDAR 125

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295

 Score = 44.6 bits (105), Expect = 5e-05
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 32/193 (16%)

Query: 309 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIP 368
           +P ++ + NVV + +     +S FL S  P  ++++  SA  R   +  NLP  NR    
Sbjct: 132 RPFFWLFENVVAMGVSDKRDISRFLES-NPVMIDAKEVSAAHRARYFWGNLPGMNRPL-- 188

Query: 369 PEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQ 428
                T+ D +   +        +                  +   +   S  +   + Q
Sbjct: 189 ---ASTVNDKLELQECLEHGRIAKF----------------SKVRTITTRSNSIKQGKDQ 229

Query: 429 RDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTD 488
              +  +EK +++W             +E + G+P ++T  +  S  AR   L   +   
Sbjct: 230 HFPVFMNEKEDILW----------CTEMERVFGFPVHYTDVSNMSRLARQRLLGRSWSVP 279

Query: 489 TLGYHLSVLKSMF 501
            + +  + LK  F
Sbjct: 280 VIRHLFAPLKEYF 292

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Length = 386

 Score = 46.5 bits (109), Expect = 2e-05
 Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 3/84 (3%)

Query: 309 QPPYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFH-- 366
            P ++ + + + ++ +     S FL   EP  +   +  +L        N+P     H  
Sbjct: 278 GPFFWMFVDNLVLNKEDLDVASRFLEM-EPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWA 336

Query: 367 IPPEPPMTIQDAIPHTKKWWPSWD 390
           +  E  +++      + K    W 
Sbjct: 337 LVSEEELSLLAQNKQSSKLAAKWP 360

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 30/139 (21%), Positives = 46/139 (33%), Gaps = 40/139 (28%)

Query: 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVI-----SIETSETNRRILKRWWESSGQTGELVQ 559
           L ++ +FSG+GG  +   R G  +K  +     +I T   N                L  
Sbjct: 3   LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINFP------------RSLHV 50

Query: 560 IEDIQALTTKKFESLIHKLGSIDFVI----CQNSVPQIPNSKQ-ISNSKDPKMAAESDNL 614
            ED+  L  +  +        ID +I    CQ        S     N  D +      N 
Sbjct: 51  QEDVSLLNAEIIKGFFKNDMPIDGIIGGPPCQ------GFSSIGKGNPDDSR------N- 97

Query: 615 PDFDFSLYYEFVRVVQRVR 633
                 LY  F R+V  ++
Sbjct: 98  -----QLYMHFYRLVSELQ 111

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	637
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	99.92
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.91
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.89
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.89
3me5_A	482	Cytosine-specific methyltransferase; structural ge	99.88
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	99.87
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	99.87
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	99.86
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	99.86
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	99.85
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	99.77
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	99.75
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	99.75
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	99.71
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	99.51
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	99.42
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	99.37
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	98.87
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	98.81
3me5_A	482	Cytosine-specific methyltransferase; structural ge	98.79
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	98.72
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	98.71
2qrv_B	230	DNA (cytosine-5)-methyltransferase 3-like; DNA met	98.65
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	98.63
4ae4_A	118	Ubiquitin-associated protein 1; protein transport,	98.58
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	98.27
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	98.09
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.98
2lbc_A	126	Ubiquitin carboxyl-terminal hydrolase 13; tandem U	97.94
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.79
2pv0_B	386	DNA (cytosine-5)-methyltransferase 3-like; DNMT3L,	97.72
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.56
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.54
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.5
2frn_A	278	Hypothetical protein PH0793; structural genomics,	97.49
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	97.43
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	97.38
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.33
1ws6_A	171	Methyltransferase; structural genomics, riken stru	97.25
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	97.22
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	97.2
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.19
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.17
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.16
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	97.1
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.08
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.06
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	96.99
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.95
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	96.92
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	96.87
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	96.87
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.82
3lpm_A	259	Putative methyltransferase; structural genomics, p	96.76
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.74
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	96.73
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	96.69
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.68
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.59
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	96.57
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.54
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	96.54
2h00_A	254	Methyltransferase 10 domain containing protein; st	96.53
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	96.52
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	96.47
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.45
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	96.44
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.42
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	96.42
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.41
2b3t_A	276	Protein methyltransferase HEMK; translation termin	96.41
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	96.39
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	96.38
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	96.34
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	96.27
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	96.26
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.18
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.17
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	96.13
3ll7_A	410	Putative methyltransferase; methytransferase, stru	96.1
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	96.1
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	96.09
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	96.06
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.03
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	95.97
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	95.97
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	95.97
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	95.94
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	95.91
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.89
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	95.86
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.86
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	95.86
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	95.83
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	95.81
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	95.81
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	95.76
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.75
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	95.73
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	95.73
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	95.7
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	95.68
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	95.62
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	95.62
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	95.59
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	95.58
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	95.57
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	95.57
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.56
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	95.54
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.54
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	95.51
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	95.45
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.44
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	95.43
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	95.4
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.38
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	95.38
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.32
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	95.29
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.27
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.22
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	95.19
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.18
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	95.08
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	95.06
2qm3_A	373	Predicted methyltransferase; putative methyltransf	95.04
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	95.02
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	94.94
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	94.92
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	94.91
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	94.89
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	94.83
1wgn_A	63	UBAP1, ubiquitin associated protein; ubiquitin ass	94.75
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	94.74
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	94.74
3f4k_A	257	Putative methyltransferase; structural genomics, P	94.73
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.71
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	94.7
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	94.7
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	94.66
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	94.63
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	94.5
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	94.44
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	94.44
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	94.44
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.43
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	94.36
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	94.36
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	94.36
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	94.27
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	94.27
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	94.22
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	94.21
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	94.21
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	94.19
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	94.19
2ekk_A	47	UBA domain from E3 ubiquitin-protein ligase HUWE1;	94.18
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	94.14
1ify_A	49	HHR23A, UV excision repair protein RAD23 homolog A	94.13
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	93.98
3lcc_A	235	Putative methyl chloride transferase; halide methy	93.98
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	93.95
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	93.95
2zig_A	297	TTHA0409, putative modification methylase; methylt	93.93
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	93.92
2g3q_A	43	Protein YBL047C; endocytosis, solution structure,	93.91
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	93.87
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	93.85
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.84
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	93.83
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	93.82
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	93.82
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	93.79
1xxl_A	239	YCGJ protein; structural genomics, protein structu	93.73
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	93.69
2dak_A	63	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	93.67
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	93.63
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	93.62
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	93.6
2p7i_A	250	Hypothetical protein; putative methyltransferase,	93.56
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	93.54
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	93.53
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	93.53
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	93.5
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	93.48
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	93.44
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	93.43
3ocj_A	305	Putative exported protein; structural genomics, PS	93.3
1vg5_A	73	RSGI RUH-014, rhomboid family protein; UBA domain,	93.3
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	93.29
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	93.25
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	93.25
1wji_A	63	Tudor domain containing protein 3; UBA domain, str	93.25
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	93.17
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	93.16
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	93.14
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	93.13
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	93.11
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	93.1
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	93.1
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	93.09
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	93.07
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	93.04
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	93.01
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	93.0
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	92.99
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	92.98
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	92.96
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	92.96
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	92.93
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	92.93
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	92.92
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	92.9
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	92.9
1z96_A	40	DNA-damage, UBA-domain protein MUD1; ubiquitin, th	92.86
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	92.85
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	92.79
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	92.78
1veg_A	83	NEDD8 ultimate buster-1; ubiquitin associated doma	92.69
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	92.64
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	92.63
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	92.6
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	92.59
3lkd_A	542	Type I restriction-modification system methyltrans	92.57
1wiv_A	73	UBP14, ubiquitin-specific protease 14; ubiquitin a	92.56
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	92.54
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	92.46
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	92.45
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	92.44
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	92.39
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	92.37
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	92.32
2d9s_A	53	CBL E3 ubiquitin protein ligase; UBA domain, dimer	92.29
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	92.25
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	92.23
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	92.15
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	92.15
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	92.11
2cos_A	54	Serine/threonine protein kinase LATS2; UBA domain,	92.06
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	92.05
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	92.04
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	92.0
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	91.94
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	91.9
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	91.89
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	91.69
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	91.64
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	91.55
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	91.55
1dv0_A	47	DNA repair protein HHR23A; helical bundle, DNA bin	91.52
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	91.51
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	91.48
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	91.45
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	91.43
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	91.33
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	91.22
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	91.09
3khk_A	544	Type I restriction-modification system methylation	91.01
3cc8_A	230	Putative methyltransferase; structural genomics, j	90.96
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	90.92
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	90.9
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	90.71
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	90.65
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	90.45
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	90.37
2cpw_A	64	CBL-interacting protein STS-1 variant; ubiquitin a	90.32
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	90.31
2o07_A	304	Spermidine synthase; structural genomics, structur	90.24
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	90.2
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	90.16
2b25_A	336	Hypothetical protein; structural genomics, methyl	90.1
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	90.05
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	89.87
2i7c_A	283	Spermidine synthase; transferase, structural genom	89.69
1whc_A	64	RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain	89.65
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	89.44
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	89.41
2juj_A	56	E3 ubiquitin-protein ligase CBL; alpha helix, UBA	89.39
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	89.13
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	89.08
2oo9_A	46	E3 ubiquitin-protein ligase CBL; alpha-helical dom	89.07
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	89.03
2knz_A	53	Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc	89.0
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	88.99
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	88.85
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	88.8
2crn_A	64	Ubash3A protein; compact three-helix bundle, struc	88.77
2pt6_A	321	Spermidine synthase; transferase, structural genom	88.73
2oo3_A	283	Protein involved in catabolism of external DNA; st	88.65
2dai_A	83	Ubadc1, ubiquitin associated domain containing 1;	88.56
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	88.54
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	88.4
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	88.36
1wj7_A	104	Hypothetical protein (RSGI RUH-015); UBA domain, u	88.31
1ixs_A	62	Holliday junction DNA helicase RUVA; heterodimeric	88.3
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	88.28
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	88.25
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	88.22
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	88.12
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	88.12
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	87.92
4fp9_B	335	Mterf domain-containing protein 2; modification en	87.54
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	87.54
3i9f_A	170	Putative type 11 methyltransferase; structural gen	87.46
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	87.42
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	87.09
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	87.02
2dna_A	67	Unnamed protein product; ubiquitin associated doma	86.64
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	86.34
2dkl_A	85	Trinucleotide repeat containing 6C protein; TNRC6C	86.31
2jy5_A	52	Ubiquilin-1; UBA, alternative splicing, cytoplasm,	86.09
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	86.09
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	85.82
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	85.73
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	85.55
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	85.47
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	85.46
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	85.32
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	84.98
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	84.77
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	84.24
2dag_A	74	Ubiquitin carboxyl-terminal hydrolase 5; isopeptid	84.15
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	83.97
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	83.06
2ooa_A	52	E3 ubiquitin-protein ligase CBL-B; alpha-helical d	82.95
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	82.52
3ege_A	261	Putative methyltransferase from antibiotic biosyn	82.5
1vek_A	84	UBP14, ubiquitin-specific protease 14, putative; U	82.06
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	80.65
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	80.5
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	80.43
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	80.32
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	80.05

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=99.92  E-value=2.6e-26  Score=235.60  Aligned_cols=105  Identities=17%  Similarity=0.347  Sum_probs=93.2

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  584 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  584 (637)
                      |+||||||||||+++||++|||  ++++++|+|+.|++||+.+|.      ..++.+||++|+.+++       +.+|||
T Consensus         1 mkvidLFsG~GG~~~G~~~aG~--~~v~a~e~d~~a~~ty~~N~~------~~~~~~DI~~i~~~~~-------~~~D~l   65 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS------AKLIKGDISKISSDEF-------PKCDGI   65 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTTC--EEEEEEECCTTTHHHHHHHCC------SEEEESCGGGCCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC------CCcccCChhhCCHhhC-------CcccEE
Confidence            6899999999999999999998  579999999999999998653      2366899999998765       479999


Q ss_pred             EEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          585 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       585 IGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      +||||||+||.+            |+++|++|+|+.||++|+|+|+++||.+
T Consensus        66 ~ggpPCQ~fS~a------------g~~~g~~d~R~~L~~~~~r~i~~~~Pk~  105 (331)
T 3ubt_Y           66 IGGPPSQSWSEG------------GSLRGIDDPRGKLFYEYIRILKQKKPIF  105 (331)
T ss_dssp             ECCCCGGGTEET------------TEECCTTCGGGHHHHHHHHHHHHHCCSE
T ss_pred             EecCCCCCcCCC------------CCccCCCCchhHHHHHHHHHHhccCCeE
Confidence            999999999964            5577899999999999999999999864

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.91  E-value=1.2e-24  Score=224.95  Aligned_cols=116  Identities=22%  Similarity=0.371  Sum_probs=100.9

Q ss_pred             cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634          500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       500 ~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      ..+.+++||||||||||+++||+++||++++++++|+|+.|+++|+.+|.     +..++.+||++++.+.+.+    .+
T Consensus        12 ~~~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~-----~~~~~~~DI~~i~~~~i~~----~~   82 (295)
T 2qrv_A           12 EKRKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ-----GKIMYVGDVRSVTQKHIQE----WG   82 (295)
T ss_dssp             CCCCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT-----TCEEEECCGGGCCHHHHHH----TC
T ss_pred             ccCCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC-----CCceeCCChHHccHHHhcc----cC
Confidence            45678999999999999999999999987779999999999999987653     3446789999999987764    36


Q ss_pred             CccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634          580 SIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  635 (637)
Q Consensus       580 ~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~  635 (637)
                      ++|||+||||||+||.+|+           +|.|++|+|+.||++|+|||+++||.
T Consensus        83 ~~Dll~ggpPCQ~fS~ag~-----------~r~g~~d~r~~L~~~~~rii~~~~P~  127 (295)
T 2qrv_A           83 PFDLVIGGSPCNDLSIVNP-----------ARKGLYEGTGRLFFEFYRLLHDARPK  127 (295)
T ss_dssp             CCSEEEECCCCGGGBTTCT-----------TCCTTTSTTTTHHHHHHHHHHHHSCC
T ss_pred             CcCEEEecCCCccccccCc-----------cccccccccchhHHHHHHHHHHhCcc
Confidence            8999999999999997631           36789999999999999999999986

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.89  E-value=1.1e-23  Score=220.94  Aligned_cols=110  Identities=14%  Similarity=0.237  Sum_probs=97.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      .+++|||||||||+++||+++|+.+++++++|+|+.|+++|+.+|..     ..++.+||++++.+++..     ..+||
T Consensus         3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~-----~~~~~~DI~~~~~~~~~~-----~~~D~   72 (333)
T 4h0n_A            3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPE-----TNLLNRNIQQLTPQVIKK-----WNVDT   72 (333)
T ss_dssp             CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECCCGGGCCHHHHHH-----TTCCE
T ss_pred             CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCCC-----CceeccccccCCHHHhcc-----CCCCE
Confidence            58999999999999999999999889999999999999999987642     335679999999988764     26999


Q ss_pred             EEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh-cc
Q 006634          584 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR-SM  635 (637)
Q Consensus       584 VIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK-~~  635 (637)
                      |+||||||+||.+            |+++|++|+|+.||++|+|+|+++| |.
T Consensus        73 l~ggpPCQ~fS~a------------g~~~~~~d~r~~L~~~~~r~i~~~~~P~  113 (333)
T 4h0n_A           73 ILMSPPCQPFTRN------------GKYLDDNDPRTNSFLYLIGILDQLDNVD  113 (333)
T ss_dssp             EEECCCCCCSEET------------TEECCTTCTTSCCHHHHHHHGGGCTTCC
T ss_pred             EEecCCCcchhhh------------hhccCCcCcccccHHHHHHHHHHhcCCC
Confidence            9999999999974            4567899999999999999999997 75

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.89  E-value=7.5e-24  Score=221.69  Aligned_cols=117  Identities=18%  Similarity=0.322  Sum_probs=98.2

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeE-EEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634          496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGV-ISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~v-vaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      +|+++...++++|||||||||+++||+++||+++++ +++|+|+.|++||+.+|..+      ++.+||++++.++|.. 
T Consensus         2 ~l~~m~~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~------~~~~DI~~~~~~~i~~-   74 (327)
T 3qv2_A            2 PLGSMQQKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE------VQVKNLDSISIKQIES-   74 (327)
T ss_dssp             ------CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC------CBCCCTTTCCHHHHHH-
T ss_pred             CCccccCCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC------cccCChhhcCHHHhcc-
Confidence            456677778999999999999999999999877899 99999999999999877422      5679999999988764 


Q ss_pred             hhccCCccEEEEcCCCCCc--CccCccCCCCCccccccCCCCCCCCcchHHHHHH-HHHHh--hcc
Q 006634          575 IHKLGSIDFVICQNSVPQI--PNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVR-VVQRV--RSM  635 (637)
Q Consensus       575 ~~~~g~~DLVIGGpPCQ~F--S~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~R-IV~~v--K~~  635 (637)
                          ..+|||+||||||+|  |.            ||+++|++|+|+.||++|+| +|+++  ||.
T Consensus        75 ----~~~Dil~ggpPCQ~fs~S~------------ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~  124 (327)
T 3qv2_A           75 ----LNCNTWFMSPPCQPYNNSI------------MSKHKDINDPRAKSVLHLYRDILPYLINKPK  124 (327)
T ss_dssp             ----TCCCEEEECCCCTTCSHHH------------HTTTCTTTCGGGHHHHHHHHTTGGGCSSCCS
T ss_pred             ----CCCCEEEecCCccCccccc------------CCCCCCCccccchhHHHHHHHHHHHhccCCC
Confidence                279999999999999  75            45577899999999999999 99998  665

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=99.88  E-value=2.3e-23  Score=228.33  Aligned_cols=125  Identities=18%  Similarity=0.272  Sum_probs=88.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhh--------H-HHh
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKK--------F-ESL  574 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~--------I-e~l  574 (637)
                      ++++|||||||||+++||+++|+  ++|++||+|+.|++||+.+|..  .++..++.+||++++...        + ..+
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~--~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGG--QCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTE--EEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            58999999999999999999997  5799999999999999988732  234456679999887432        1 111


Q ss_pred             hhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCC-CCCcchHHHHHHHHHHhhccc
Q 006634          575 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLP-DFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       575 ~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~-D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      ....+++|||+||||||+||.+|+..  ++  ..|++.|+. |+|+.||++|+|+|+++||.+
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~AG~~k--~~--~~g~~~G~~~D~R~~Lf~e~~riI~~~rPk~  222 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSLAGVSK--KN--SLGRAHGFACDTQGTLFFDVVRIIDARRPAM  222 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC----------------------CTTTTSHHHHHHHHHHHHCCSE
T ss_pred             hhcCCCCCEEEecCCCcchhhhCccc--cc--ccccccccccCccccHHHHHHHHHHHcCCcE
Confidence            12457899999999999999886421  11  123455775 899999999999999999864

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=99.87  E-value=1.4e-22  Score=211.65  Aligned_cols=106  Identities=19%  Similarity=0.323  Sum_probs=92.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .++++||||||+||+++||+++|+  +++++||+|+.|+++|+.+|...      . .+||++++.+.+       +.+|
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~--~~v~~~e~d~~a~~t~~~N~~~~------~-~~Di~~~~~~~~-------~~~D   73 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK------P-EGDITQVNEKTI-------PDHD   73 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC------C-BSCGGGSCGGGS-------CCCS
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHcCCC------C-cCCHHHcCHhhC-------CCCC
Confidence            468999999999999999999998  57999999999999999987532      1 689999987644       3699


Q ss_pred             EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      ||+||||||+||.+            |++.|++|+|+.||++|+|+|+++||..
T Consensus        74 ~l~~gpPCQ~fS~a------------g~~~g~~d~r~~L~~~~~r~i~~~~P~~  115 (327)
T 2c7p_A           74 ILCAGFPCQAFSIS------------GKQKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             EEEEECCCTTTCTT------------SCCCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             EEEECCCCCCcchh------------cccCCCcchhhHHHHHHHHHHHhccCcE
Confidence            99999999999975            4466888999999999999999999853

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=99.87  E-value=7.8e-23  Score=217.47  Aligned_cols=113  Identities=20%  Similarity=0.306  Sum_probs=92.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      .++||||||||||+++||+++|+  +++++||+|+.|+++|+.+|.     ...++.+||++++.+++.......+.+||
T Consensus         2 ~~~vidLFsG~GGlslG~~~aG~--~~v~avE~d~~a~~t~~~N~~-----~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            2 SLNVIDLFSGVGGLSLGAARAGF--DVKMAVEIDQHAINTHAINFP-----RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHTC--EEEEEECSCHHHHHHHHHHCT-----TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CCeEEEEccCcCHHHHHHHHCCC--cEEEEEeCCHHHHHHHHHhCC-----CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            48999999999999999999997  579999999999999998653     33467899999998877543223468999


Q ss_pred             EEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          584 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       584 VIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      |+||||||+||.+            |++ +.+|+|+.||++|+|+|+++||.+
T Consensus        75 i~ggpPCQ~fS~a------------g~~-~~~d~r~~L~~~~~~~v~~~~P~~  114 (376)
T 3g7u_A           75 IIGGPPCQGFSSI------------GKG-NPDDSRNQLYMHFYRLVSELQPLF  114 (376)
T ss_dssp             EEECCCCCTTC--------------------CHHHHHHHHHHHHHHHHHCCSE
T ss_pred             EEecCCCCCcccc------------cCC-CCCCchHHHHHHHHHHHHHhCCCE
Confidence            9999999999975            334 688999999999999999999864

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=99.86  E-value=1.6e-22  Score=212.05  Aligned_cols=110  Identities=17%  Similarity=0.358  Sum_probs=80.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +++|||||||+||+++||+++|++++++++||+|+.|+++|+.+|..     ..++.+||++++.+.+...     .+|+
T Consensus         2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~~-----~~~~~~Di~~~~~~~~~~~-----~~D~   71 (343)
T 1g55_A            2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPH-----TQLLAKTIEGITLEEFDRL-----SFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCTT-----SCEECSCGGGCCHHHHHHH-----CCSE
T ss_pred             CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhccc-----cccccCCHHHccHhHcCcC-----CcCE
Confidence            47899999999999999999998778999999999999999987643     2356899999988766532     6999


Q ss_pred             EEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhh--cc
Q 006634          584 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVR--SM  635 (637)
Q Consensus       584 VIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK--~~  635 (637)
                      |+||||||+||.+            |++.|++|+|+.||++|+|+|++++  |.
T Consensus        72 l~~gpPCq~fS~a------------g~~~g~~d~r~~l~~~~~~~i~~~~~~P~  113 (343)
T 1g55_A           72 ILMSPPCQPFTRI------------GRQGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEEcCCCcchhhc------------CCcCCccCccchHHHHHHHHHHHhcCCCC
Confidence            9999999999975            4567899999999999999999998  64

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=99.86  E-value=1.6e-22  Score=231.26  Aligned_cols=122  Identities=17%  Similarity=0.170  Sum_probs=94.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH----
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES----  573 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi----~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~----  573 (637)
                      ...++|||||||||||++||++||.    .+++++|||+|+.|++||+.+|     +.+.+..+||.++....++.    
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh-----p~~~~~~~di~~i~~~~~~~~~~~  284 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH-----PQTEVRNEKADEFLALLKEWAVLC  284 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC-----TTSEEEESCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC-----CCCceecCcHHHhhhhhhhccccc
Confidence            3569999999999999999999982    2578999999999999998754     44456678887664432221    


Q ss_pred             --------------------------------------------------------------------------------
Q 006634          574 --------------------------------------------------------------------------------  573 (637)
Q Consensus       574 --------------------------------------------------------------------------------  573 (637)
                                                                                                      
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~  364 (784)
T 4ft4_B          285 KKYVQDVDSNLASSEDQADEDSPLDKDEFVVEKLVGICYGGSDRENGIYFKVQWEGYGPEEDTWEPIDNLSDCPQKIREF  364 (784)
T ss_dssp             HHTC-----------------------CCCEEEEEEEEESCSSSCSSEEEEEEETTCCTTSCEEEESGGGTTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhcccccccccccccccchhhhcccccccccccccccccccchhcccc
Confidence                                                                                            


Q ss_pred             --------hhhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          574 --------LIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       574 --------l~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                              .....|++|||+||||||+||.+|+..        |...++.|+|+.||++|+|+|+++||.+
T Consensus       365 ~~~~~~~~~~~~~G~VDvl~GGpPCQ~FS~aG~~k--------g~~~~~~D~R~~L~~~~~riv~~~rPk~  427 (784)
T 4ft4_B          365 VQEGHKRKILPLPGDVDVICGGPPCQGISGFNRYR--------NRDEPLKDEKNKQMVTFMDIVAYLKPKY  427 (784)
T ss_dssp             HHHHHHHTSSCCTTSCSEEEECCCCCSSSGGGGGS--------CTTSTTTSTTCHHHHHHHHHHHHHCCSE
T ss_pred             ccccchhhccCCCCCeEEEEecCCCcchhhhhccc--------CcCccccCchhHHHHHHHHHHHHHCCCE
Confidence                    011236899999999999999875521        2234588999999999999999999864

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=99.85  E-value=5.9e-22  Score=212.88  Aligned_cols=111  Identities=13%  Similarity=0.125  Sum_probs=90.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceee----EEEeecCHHHHHHHHHHhhhcCCC---------------C-Cc-----
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKG----VISIETSETNRRILKRWWESSGQT---------------G-EL-----  557 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~----vvaVEid~~a~~t~r~~~~~tn~~---------------g-~l-----  557 (637)
                      .+++||||||||||+++||+++|+++++    |++||+|+.|+++|+.+|......               + ..     
T Consensus         9 ~~lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~~~~~~~~~~~~~l~~~s~d~k~~~~~~~   88 (403)
T 4dkj_A            9 KVIKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSKNFNPKIERLDRDILSISNDSKMPISEYG   88 (403)
T ss_dssp             EEEEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCSSCCCCCBCCCTTCCCCBSSSSSCCCHHH
T ss_pred             ccceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCCCcccchhhhhhhhhhccccccccccccc
Confidence            4699999999999999999999976666    999999999999999988643100               0 00     


Q ss_pred             --------------------cccccccccChhhHHHhhhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCC-
Q 006634          558 --------------------VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPD-  616 (637)
Q Consensus       558 --------------------~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D-  616 (637)
                                          ...+||++++..+++      +.+|||+||||||+||.+            |++.|++| 
T Consensus        89 i~~l~~~~l~~i~~~~~~~~~~~~DI~~i~~~~ip------~~vDll~ggpPCQ~fS~a------------g~~~g~~d~  150 (403)
T 4dkj_A           89 IKKINNTIKASYLNYAKKHFNNLFDIKKVNKDNFP------KNIDIFTYSFPCQDLSVQ------------GLQKGIDKE  150 (403)
T ss_dssp             HHHHTTBHHHHHHHHHHHHSCBCCCGGGCCTTTSC------SSCSEEEECCCCTTTCTT------------SCCCCCCGG
T ss_pred             cccccHHHHHHHHhhcccCCCcccchhhcCHhhCC------CCCcEEEEeCCCCCHHHh------------CCCCCCCcc
Confidence                                024888888876653      358999999999999975            44668876 


Q ss_pred             --CCcchHHHHHHHHHH
Q 006634          617 --FDFSLYYEFVRVVQR  631 (637)
Q Consensus       617 --~Rs~LF~Ey~RIV~~  631 (637)
                        +|+.||++|+|+|++
T Consensus       151 ~~~r~~L~~~~~rii~~  167 (403)
T 4dkj_A          151 LNTRSGLLWEIERILEE  167 (403)
T ss_dssp             GCCSGGGHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHH
Confidence              999999999999998

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=99.77  E-value=1.2e-19  Score=212.93  Aligned_cols=119  Identities=21%  Similarity=0.257  Sum_probs=91.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----Hhh--
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----SLI--  575 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie----~l~--  575 (637)
                      ...+++|||||||||+++||++||| .++++|||||+.|+.||+.+|     ++..++.+||.+|....+.    ...  
T Consensus       538 ~~~l~~iDLFaG~GGlslGl~~AG~-~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~  611 (1002)
T 3swr_A          538 LPKLRTLDVFSGCGGLSEGFHQAGI-SDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQ  611 (1002)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHHHTS-EEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCC
T ss_pred             CCCCeEEEeccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhh
Confidence            4579999999999999999999998 368999999999999998765     3445667888776432111    110  


Q ss_pred             --hccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          576 --HKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       576 --~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                        ...+.+|||+||||||+||.+|+.    +      ..+..|+|+.||++|+|+|+++||..
T Consensus       612 ~lp~~~~vDll~GGpPCQ~FS~ag~~----~------~~~~~d~R~~L~~~~~riv~~~rPk~  664 (1002)
T 3swr_A          612 RLPQKGDVEMLCGGPPCQGFSGMNRF----N------SRTYSKFKNSLVVSFLSYCDYYRPRF  664 (1002)
T ss_dssp             BCCCTTTCSEEEECCCCTTCCSSSCC----C------HHHHHHHTTSHHHHHHHHHHHHCCSE
T ss_pred             hcccCCCeeEEEEcCCCcchhhhCCC----C------CCcccchhhHHHHHHHHHHHHhCCCE
Confidence              123579999999999999987431    0      12356889999999999999999864

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=99.75  E-value=1.4e-19  Score=216.94  Aligned_cols=118  Identities=21%  Similarity=0.282  Sum_probs=90.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH----H----h
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE----S----L  574 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie----~----l  574 (637)
                      ..+++|||||||||+++||++||| .+++++||+++.|++||+.+|.     +..++.+||.++....+.    .    .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~-~~vv~avEid~~A~~ty~~N~p-----~~~~~~~DI~~l~~~~~~gdi~~~~~~~  923 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGI-SETLWAIEMWDPAAQAFRLNNP-----GTTVFTEDCNVLLKLVMAGEVTNSLGQR  923 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTS-EEEEEEECCSHHHHHHHHHHCT-----TSEEECSCHHHHHHHHTTTCSBCSSCCB
T ss_pred             CCceEEecccCccHHHHHHHHCCC-CceEEEEECCHHHHHHHHHhCC-----CCcEeeccHHHHhHhhhccchhhhhhhh
Confidence            568999999999999999999998 3689999999999999988653     334556787765432210    0    0


Q ss_pred             hhccCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          575 IHKLGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       575 ~~~~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      +...+.+|||+||||||+||.+|+.    +      ..+..|+|+.||++|+|+|+++||.+
T Consensus       924 lp~~~~vDvl~GGpPCQ~FS~agr~----~------~~~~~d~R~~L~~~~lriv~~~rPk~  975 (1330)
T 3av4_A          924 LPQKGDVEMLCGGPPCQGFSGMNRF----N------SRTYSKFKNSLVVSFLSYCDYYRPRF  975 (1330)
T ss_dssp             CCCTTTCSEEEECCCCTTTCSSSCC----C------HHHHHHHHHSHHHHHHHHHHHHCCSE
T ss_pred             ccccCccceEEecCCCccccccccc----c------cccccchhhHHHHHHHHHHHHhcCcE
Confidence            1112579999999999999987431    0      12456889999999999999999863

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.75  E-value=5e-19  Score=177.51  Aligned_cols=86  Identities=22%  Similarity=0.300  Sum_probs=70.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+++||||||||||   ||++|||++                +     .|+++.+++.+||++|+.++|++    ++++|
T Consensus        32 ~~~~vidLFaGig~---Gl~~aGf~~----------------~-----~N~~~~~~~~~DI~~i~~~~i~~----~~~~D   83 (230)
T 2qrv_B           32 QPVRVLSLFEDIKK---ELTSLGFLE----------------S-----GSDPGQLKHVVDVTDTVRKDVEE----WGPFD   83 (230)
T ss_dssp             CCCCEEEESSCCTT---TTTTTTSCC--------------------------CCEEEESCCTTCCHHHHHH----TCCCS
T ss_pred             CCceEEEeccChhH---HHHHCCCch----------------h-----hcCCCCcEecCChhhCCHhHhcc----cCCCC
Confidence            45899999999998   899999963                1     23445556789999999988764    47899


Q ss_pred             EEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634          583 FVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  635 (637)
Q Consensus       583 LVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~  635 (637)
                      ||+||||||+||.+                   ++|++||++|+|||+++||.
T Consensus        84 lliGG~PCQ~FS~a-------------------g~rg~Lf~ef~Riv~~~rPk  117 (230)
T 2qrv_B           84 LVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  117 (230)
T ss_dssp             EEEEECCCTTTSSC-------------------SCTHHHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCccccc-------------------CCCchHHHHHHHHHHHHCcC
Confidence            99999999999964                   25889999999999999986

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=99.71  E-value=6e-18  Score=180.25  Aligned_cols=87  Identities=23%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      ..+++||||||||||   ||++|||++                     ..|+++..++.+||++|+.++|++    .+++
T Consensus       187 ~~~ikvidLFaGiGg---Gl~~aGf~v---------------------~~N~~~~~~~~~DI~~i~~~~i~~----~~~~  238 (386)
T 2pv0_B          187 RQPVRVLSLFEDIKK---ELTSLGFLE---------------------SGSDPGQLKHVVDVTDTVRKDVEE----WGPF  238 (386)
T ss_dssp             CCCCCEEEESSCCHH---HHHHTTSSC---------------------SSCCSCSEEEESCCTTCCHHHHHH----SCCC
T ss_pred             hcCceeeEEeccCCh---hHhhcCccH---------------------HHcCCCCcEEeCChhhCCHhHhcc----cCCC
Confidence            456999999999997   999999963                     135556566789999999987764    4689


Q ss_pred             cEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhcc
Q 006634          582 DFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSM  635 (637)
Q Consensus       582 DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~  635 (637)
                      |||+||||||+||.+                   |+|++||++|+|||+++||.
T Consensus       239 DlliGG~PCQ~FS~A-------------------~~Rg~Lf~ef~Riv~~~rPk  273 (386)
T 2pv0_B          239 DLVYGATPPLGHTCD-------------------RPPSWYLFQFHRLLQYARPK  273 (386)
T ss_dssp             SEEEEECCCTTTCSC-------------------SCTHHHHHHHHHHHHHHSCC
T ss_pred             CEEEECCCCCccccc-------------------CCcchHHHHHHHHHHHhCCC
Confidence            999999999999963                   36899999999999999985

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=99.51  E-value=2.5e-14  Score=147.88  Aligned_cols=160  Identities=20%  Similarity=0.320  Sum_probs=117.4

Q ss_pred             CC-ccccccccccchhhHHHhhhhhccCCceeecccccchhcccccccccCCCCCCCCCCC-CCCCccccccCCCCCCCC
Q 006634          310 PP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRFHIPP-EPPMTIQDAIPHTKKWWP  387 (637)
Q Consensus       310 pp-fF~yeNV~~~~~~~w~~IsrfL~~i~Pe~vds~~fsaa~R~Rgy~hNLP~~~R~~~~p-~~p~ti~e~lp~~~~~wp  387 (637)
                      +| ||++|||..+-...+.+|.++|. ..+.+|||+.|.|++|+|.||.++|...+....+ .+.+|++|+|...+.   
T Consensus       132 ~P~~~l~ENV~gl~~~~~~~~~~~l~-~~~~vl~a~~~~PQ~R~R~~i~~~~~~~~p~~~~~~~~~tv~d~l~~~~~---  207 (295)
T 2qrv_A          132 RPFFWLFENVVAMGVSDKRDISRFLE-SNPVMIDAKEVSAAHRARYFWGNLPGMNRPLASTVNDKLELQECLEHGRI---  207 (295)
T ss_dssp             CCCEEEEEEESSBCHHHHHHHHHHHT-SCCCCEEGGGTSSBCCEEEEEECCTTSSSCCCCCSSCCCSGGGTSCTTCE---
T ss_pred             CccEEEEEcCcchhhcCccHHHHHHh-cCcEEeecceECCccCcEEEEEEecCccCCCcccccCcccHHHHhcCCcc---
Confidence            44 78999999998888888999996 5899999999999999999999999876522111 236899999976543   


Q ss_pred             CcCcccccceecccCcchhHHHHHHHHHHhhhcCCCchhhhHHHHHhhcccceeeecCccccCCChhhHHHHhcCCCCCc
Q 006634          388 SWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHT  467 (637)
Q Consensus       388 ~wd~r~k~~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T  467 (637)
                        ....+++++++....+.           ..++              +.+-.  ...++.+.|++.|+.||+|||++|+
T Consensus       208 --~~~~~~~~i~~~~~~~~-----------~g~~--------------~~~~~--~~~~~~R~lt~rE~arlqgFPd~~~  258 (295)
T 2qrv_A          208 --AKFSKVRTITTRSNSIK-----------QGKD--------------QHFPV--FMNEKEDILWCTEMERVFGFPVHYT  258 (295)
T ss_dssp             --ESSSSBC---------------------------------------CCSCE--EETTEEECCCHHHHHHHHTCCTTTT
T ss_pred             --cccCccccccCCCceec-----------CCCC--------------CCccc--ccCCCcCCCCHHHHHHHcCCCHHHe
Confidence              22345555554321110           1110              00111  2246789999999999999999999


Q ss_pred             ccCCCChHHHHHhhhhhhcccchhhhhccccccCC
Q 006634          468 QAAGNSLTARLESLRHCFQTDTLGYHLSVLKSMFP  502 (637)
Q Consensus       468 ~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~  502 (637)
                      ..++++.++++|.+||++.++.+.++...|+.++.
T Consensus       259 ~~~~~s~~~~~~qiGNaVpv~~~~~i~~~i~~~l~  293 (295)
T 2qrv_A          259 DVSNMSRLARQRLLGRSWSVPVIRHLFAPLKEYFA  293 (295)
T ss_dssp             CCTTCCHHHHHHHHHTSCCHHHHHHHHGGGGGGSC
T ss_pred             eCCCcCHHHHhccEecCcCHHHHHHHHHHHHHHhc
Confidence            99899999999999999999999999988887764

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=99.42  E-value=3e-14  Score=149.40  Aligned_cols=177  Identities=12%  Similarity=0.103  Sum_probs=114.0

Q ss_pred             CCCccccccccccch-hhHHHhhhhh----ccCCceeeccccc-chhccccccc----ccCCCC--------CCCCCCCC
Q 006634          309 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTT--------NRFHIPPE  370 (637)
Q Consensus       309 ~ppfF~yeNV~~~~~-~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~----hNLP~~--------~R~~~~p~  370 (637)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||..| .|++|+|.|+    ..++..        ..+|..+.
T Consensus       111 ~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~~~~f~~~~~~~~~~P~~~~  190 (333)
T 4h0n_A          111 NVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNLTWPFKRRDEIITRLPKDFG  190 (333)
T ss_dssp             TCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTSCCCSCCCSSCBSSCSSCCC
T ss_pred             CCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCCCCCCCcccchhhhCCCCcc
Confidence            399999999998864 3577777777    7889999999999 9999999997    222211        01122222


Q ss_pred             CCCccccccCCC-----------CCCCCCcCcccc--cce-ecccCcc-------h------hHHHHHHHHHHhhhcCCC
Q 006634          371 PPMTIQDAIPHT-----------KKWWPSWDTRKH--LSC-INSGTSG-------I------SQLCERFEKLLRDSRGVL  423 (637)
Q Consensus       371 ~p~ti~e~lp~~-----------~~~wp~wd~r~k--~~c-i~t~~~~-------~------~~l~~ri~~~~~~~~~~~  423 (637)
                      .+.+|.|+|...           .+||..+|-.+.  .+| ..|...+       +      .....++.+.+....+ .
T Consensus       191 ~~~~l~d~Le~~~~~~y~~~~~~~~~~~~~d~~~~~~~~~~~~~k~~~~~~~g~gs~~~~~~~~~~~~~~~~~~~~~~-G  269 (333)
T 4h0n_A          191 VPHSLESIIEEDVDEKFLVPEKMLRCAKVFDICYKTSKRSCCFTKAYTHYADGTGSIFTDKPREVVQKCYAAAAQNEI-G  269 (333)
T ss_dssp             SCCCSSTTCCSSCCGGGBCCHHHHTTGGGCCEECTTCSCCCCCCTTBTTBSSSSCCEECSSCHHHHHHHHHHGGGSCT-T
T ss_pred             ccccHHHHhccCCcccccCCHHHHHHHHHhccCChhhhhhhhhccccceEEeccCceeccccccchhhhhcccccCCC-C
Confidence            268899998521           145555553221  111 1111100       0      0011122111111100 0


Q ss_pred             chhhhHHHHHhhcccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcccc
Q 006634          424 SSQQQRDILHRSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  498 (637)
Q Consensus       424 ~~~~q~~vl~~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK  498 (637)
                       .+.+           +.+..+.++++|+|.|++||+|||.+||...+++.++|||.+||+..|++++++.+.|.
T Consensus       270 -~~~~-----------~~~~~~~~~R~lt~~E~~rl~gfp~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~  332 (333)
T 4h0n_A          270 -GEKF-----------VELFKELKLRYFTPKEVLMIMCFPKSYNLPTNISMKQCYRLLGNSVNVKVISELLKILF  332 (333)
T ss_dssp             -CHHH-----------HHHHHTTTCBCCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             -cccc-----------eeeccCCCcCCCCHHHHHHhCCCCccccCCCCCCHHHHHHHhCCccCHHHHHHHHHHHh
Confidence             1111           12234678999999999999999999998888999999999999999999999987763

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=99.37  E-value=1.5e-13  Score=143.84  Aligned_cols=178  Identities=15%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             CCCccccccccccch-hhHHHhhhhh----ccCCceeeccccc-chhccccccc-ccCCCCCCCCCC--CCCCCcccccc
Q 006634          309 QPPYFFYGNVVDVSI-DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL-HNLPTTNRFHIP--PEPPMTIQDAI  379 (637)
Q Consensus       309 ~ppfF~yeNV~~~~~-~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~-hNLP~~~R~~~~--p~~p~ti~e~l  379 (637)
                      +|.||++|||..+-. ..|..|.+.|    |.++..++||..| .|++|+|.|+ +.... -.+|..  +.++.+|+|+|
T Consensus       122 ~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~yGvPQ~R~R~fivg~r~~-f~fP~~~~~~~~~~l~d~L  200 (327)
T 3qv2_A          122 KPKHIFIENVPLFKESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRTRYYVMARLTP-FKNEIQLHQEKESMISNYL  200 (327)
T ss_dssp             CCSEEEEEECGGGGGSHHHHHHHHHHHHTTCEEEEEEECGGGGTCSBCCCEEEEEEESSC-CCSCCCCCCCSCCCGGGGC
T ss_pred             CCCEEEEEchhhhcChHHHHHHHHHHHhCCCEEEEEEEeHHHcCCCccceEEEEEEEeCC-CCCCCcccccccccHHHHh
Confidence            799999999998865 4677787777    7789999999999 9999999994 44433 122221  12358899998


Q ss_pred             CC--------CCCCCCCcCcc--------cccceecccCcchhHHHHHHHHHHhhhcCCCchhhhHHHHHhhcccceeee
Q 006634          380 PH--------TKKWWPSWDTR--------KHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILHRSEKLNLVWV  443 (637)
Q Consensus       380 p~--------~~~~wp~wd~r--------~k~~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~~c~~~nlvW~  443 (637)
                      +.        ..+||..|...        ++-.|.|..+. .  .       ....++.+....    -......++++.
T Consensus       201 e~~~~~~y~l~~~~~~~~~~~~di~~~~~~~~~~~t~~y~-~--y-------~~~~gs~l~~~~----~~~~~~~~~~~~  266 (327)
T 3qv2_A          201 DNNVNESYSIPSDLILKKGMLFDIVGKDDKRTCCFTKSYT-K--I-------VEGTGSIYCPIE----PHFIPVKKAEDL  266 (327)
T ss_dssp             CSSCCGGGBCCHHHHHHHGGGSCEEETTSSCBCCCCTTTT-T--S-------STTSCCEEESSC----SSCCCCSSGGGG
T ss_pred             cccccccccCCHHHHHhhhcccccccccccccccccccce-E--E-------ecCCCceeeccc----ccccccCCceee
Confidence            62        22233333211        11123322110 0  0       001111110000    000112346677


Q ss_pred             cCccccCCChhhHHHHhcCCCCCccc-CCCChHHHHHhhhhhhcccchhhhhccccccC
Q 006634          444 GAYKLGPVDPEHIELILGYPSNHTQA-AGNSLTARLESLRHCFQTDTLGYHLSVLKSMF  501 (637)
Q Consensus       444 g~~~~~ple~~E~E~i~GfP~~~T~~-~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f  501 (637)
                      .+++++.|+|.|+.||+|||.+|+.. .+++.+++||.+|||+.+++++++...|+++.
T Consensus       267 ~~~~~R~lt~~E~~rlqgfP~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~l~~~l  325 (327)
T 3qv2_A          267 LNKNLRYFTPNEIKKIHGFSSNFTTQIDGLTDKQQYQCLGNSVSCFVIAQLMEYLFDDL  325 (327)
T ss_dssp             TTSCCBCCCHHHHHHHTTCCTTCCSCCTTCCHHHHHHHHHTSCCHHHHHHHHHHHTTTS
T ss_pred             cCCccccCcHHHHHHhCcCCHHHcCCcCCCCHHHHHHHccCccCHHHHHHHHHHHHHHh
Confidence            88999999999999999999999987 78999999999999999999999988887653

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=98.87  E-value=2.2e-10  Score=117.34  Aligned_cols=192  Identities=18%  Similarity=0.170  Sum_probs=101.6

Q ss_pred             cCCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhccccccc----ccCCCCCCCCCCCCCCC
Q 006634          307 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEPPM  373 (637)
Q Consensus       307 ~~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~----hNLP~~~R~~~~p~~p~  373 (637)
                      ..+|.||++|||..+-.    ..+..|-+.|    |.|.+.++||.+| .||+|+|.|+    ..++..--+|.--....
T Consensus       100 ~~~Pk~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vlna~~yGvPQ~R~Rvfivg~r~~~~~~~~~p~~~~~~~  179 (331)
T 3ubt_Y          100 QKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGFRKELNINYLPPIPHLIKP  179 (331)
T ss_dssp             HHCCSEEEEEECCGGGGCTTSHHHHHHHHHHHHHTEEEEEEEEEGGGTTCSBCCEEEEEEEEEGGGCCCCCCCCCCSCCC
T ss_pred             ccCCeEEEeeeecccccccccchhhhhhhhhccCCcEEEEEecccccCCCCcccceEEEEEEcCCCCcCCCCCCCcCCCC
Confidence            45899999999987743    4566666666    6799999999999 9999999997    33333322222112256


Q ss_pred             ccccccCCCC-CCCCCcCcccc--cceeccc-------CcchhHHHHHHHHH------HhhhcCCCch-hhhHHHHHhhc
Q 006634          374 TIQDAIPHTK-KWWPSWDTRKH--LSCINSG-------TSGISQLCERFEKL------LRDSRGVLSS-QQQRDILHRSE  436 (637)
Q Consensus       374 ti~e~lp~~~-~~wp~wd~r~k--~~ci~t~-------~~~~~~l~~ri~~~------~~~~~~~~~~-~~q~~vl~~c~  436 (637)
                      |+.|++.... .-+|.+++...  ..++...       .........+++..      +...+..... ...+.+...++
T Consensus       180 t~~d~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (331)
T 3ubt_Y          180 TFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTIFMSRNRVRQWNEPAFTVQASGRQCQLHPQAPVMLKVSK  259 (331)
T ss_dssp             CGGGTSGGGSSSCEECBGGGBCCGGGSSSTTCEECCSCCCTTGGGSCCBCCTTSCBCCCCSCSTTCCBCTTSCCCEEEET
T ss_pred             cHHHHhhhcccCCcccccccccccccccccchhhhcccccccccccccccccccccccccccCcccccccccceeeeecC
Confidence            7777652110 01111111000  0000000       00000000000000      0000000000 00000000111


Q ss_pred             ccceee-ecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634          437 KLNLVW-VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  499 (637)
Q Consensus       437 ~~nlvW-~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~  499 (637)
                      ..+-.+ ..++..+.|++.|+.||+|||++|+.- +.+.++++|.+||+..+....++...++.
T Consensus       260 ~~~~~~~~~~~~~R~LT~rE~aRLQgFPd~f~f~-~~s~~~~ykqiGNAVpp~la~~I~~~I~~  322 (331)
T 3ubt_Y          260 NLNKFVEGKEHLYRRLTVRECARVQGFPDDFIFH-YESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (331)
T ss_dssp             TEEECCTTCGGGCCBCBHHHHHHHHTCCTTCCCC-CSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCcCcCCCHHHHHHhCCCCCCCEeC-CCCHHHHhhhCccCccHHHHHHHHHHHHH
Confidence            111111 134557999999999999999999863 35899999999999998877776655543

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=98.81  E-value=1.7e-09  Score=116.46  Aligned_cols=187  Identities=12%  Similarity=0.119  Sum_probs=111.7

Q ss_pred             cCCCCccccccccccchh----hHHHhhhhh----ccCCceeeccccc-chhcccccccc------cCCCCCCC---CCC
Q 006634          307 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH------NLPTTNRF---HIP  368 (637)
Q Consensus       307 ~~~ppfF~yeNV~~~~~~----~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~h------NLP~~~R~---~~~  368 (637)
                      ..+|.||++|||..+-..    .|..|.+.|    |.+.+.++||..| .|++|+|.|+=      ..|.....   .++
T Consensus       175 ~~~Pk~~l~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~f~fP~~~~~~~~~~~  254 (403)
T 4dkj_A          175 EEMPKYLLMENVKNLLSHKNKKNYNTWLKQLEKFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKV  254 (403)
T ss_dssp             GGSCSEEEEEEEGGGGSHHHHHHHHHHHHHHHHTTEEEEEEEEEGGGTTCSBCCEEEEEEEEEHHHHHHHCCCCCCGGGC
T ss_pred             ccCCCEEEEecchhhhhhccchHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEcCCCCCCCcccccccccc
Confidence            378999999999998653    566776666    6689999999999 99999999962      22222111   111


Q ss_pred             CCCCCccccccCCC--CCC-------CCCc-CcccccceecccCcchhHHHHHHHHHHhhhcC-CCchhhhHHHHHhhcc
Q 006634          369 PEPPMTIQDAIPHT--KKW-------WPSW-DTRKHLSCINSGTSGISQLCERFEKLLRDSRG-VLSSQQQRDILHRSEK  437 (637)
Q Consensus       369 p~~p~ti~e~lp~~--~~~-------wp~w-d~r~k~~ci~t~~~~~~~l~~ri~~~~~~~~~-~~~~~~q~~vl~~c~~  437 (637)
                      ..++.+|.|+|...  .++       .|.. .++.++.+..+.-.....-..+   +. ...+ .++...      .+..
T Consensus       255 ~~~~~~l~dile~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v~-~~~~~~~Tlt~------~~~~  324 (403)
T 4dkj_A          255 KNPPKKIKDILVDSSNYKYLNLNKYETTTFRETKSNIISRPLKNYTTFNSENY---VY-NINGIGPTLTA------SGAN  324 (403)
T ss_dssp             CCCCCCGGGGCCCCSCCCCCCCTTSCCCCCEECTTSBEEEECTTSCSCGGGSE---EE-ETTSBBCCCCS------SSGG
T ss_pred             ccccccHHHHhccccccccchhhhhccccccccccchhccccccccccccCcc---ee-cCCCcccceec------CCCC
Confidence            22467999999733  111       1110 1111111111000000000000   00 0000 000000      0011


Q ss_pred             cceeeecCccccCCChhhHHHHhcCCC-CCcccC--C-CChHHHHHhhhhhhcccchhhhhccccccCCC
Q 006634          438 LNLVWVGAYKLGPVDPEHIELILGYPS-NHTQAA--G-NSLTARLESLRHCFQTDTLGYHLSVLKSMFPG  503 (637)
Q Consensus       438 ~nlvW~g~~~~~ple~~E~E~i~GfP~-~~T~~~--~-~~~teR~k~Lgnsfqvdtv~~~lsvLK~~f~~  503 (637)
                      .-++-....+++.|+|.|+.||+|||. +|....  + ++.+++||.+|||..|+++.+++..|+..+..
T Consensus       325 ~~~~~~~~~~~R~ltprE~~rlqGFpd~~~~~~~~~~~~s~~~~y~~~GNsv~v~v~~~i~~~i~~~l~~  394 (403)
T 4dkj_A          325 SRIKIETQQGVRYLTPLECFKYMQFDVNDFKKVQSTNLISENKMIYIAGNSIPVKILEAIFNTLEFVNNE  394 (403)
T ss_dssp             GSCEEEETTEEEECCHHHHHHHTTCCHHHHHHHHHTSCSCHHHHHHHHHTSCCHHHHHHHHHTCCCCCCC
T ss_pred             ceeEEccCCCcccCCHHHHHHHcCCCHHHhhhhhccCCCCHHHHHhhcCCccCHHHHHHHHHHHHHHHhc
Confidence            122223457799999999999999999 687653  3 79999999999999999999999888876653

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=98.79  E-value=5.5e-09  Score=114.84  Aligned_cols=177  Identities=13%  Similarity=0.235  Sum_probs=106.0

Q ss_pred             cCCCCccccccccccch----hhHHHhhhhh----ccCC---------ceeecccccchhccccccc----ccCCCCCCC
Q 006634          307 VAQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLE---------PEFVNSQYFSALSRREGYL----HNLPTTNRF  365 (637)
Q Consensus       307 ~~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~---------Pe~vds~~fsaa~R~Rgy~----hNLP~~~R~  365 (637)
                      ..+|.||++|||..+-.    ..|..|.+-|    |.|.         +.++||++|.||+|+|.|+    .+++....|
T Consensus       217 ~~rPk~fvlENV~gl~s~~~g~~f~~i~~~L~~lGY~v~~~~~~g~~~~~vlnA~~~vPQ~R~R~fivg~r~~~~~~~~F  296 (482)
T 3me5_A          217 ARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADF  296 (482)
T ss_dssp             HHCCSEEEEEEETTTTTGGGGHHHHHHHHHHHHTTEEETTTTCCSTTCTTEEEGGGTSSBCCEEEEEEEEEGGGCCCTTC
T ss_pred             HcCCcEEEEeCcHHHhcccCCcHHHHHHHHHhcCCcEEEeccccCcccceeeeccccCCccceEEEEEEEecCcccccCc
Confidence            46899999999999854    3566666666    4554         7899999999999999997    344433333


Q ss_pred             C------CCCCCCCccccccCCCCCCCCCcCcccccceecccCcchhHHHHHHHHH----HhhhcCC-C---chhhhHHH
Q 006634          366 H------IPPEPPMTIQDAIPHTKKWWPSWDTRKHLSCINSGTSGISQLCERFEKL----LRDSRGV-L---SSQQQRDI  431 (637)
Q Consensus       366 ~------~~p~~p~ti~e~lp~~~~~wp~wd~r~k~~ci~t~~~~~~~l~~ri~~~----~~~~~~~-~---~~~~q~~v  431 (637)
                      .      ..|.++.||.|+|....      +  .|.  ..+     .++-+.+.+.    ..+..++ +   ......  
T Consensus       297 ~~~~~~~~~p~~~~~l~diLe~~~------~--~ky--~l~-----~~~~~~l~~~~~~~~~~g~gf~~~i~~~~~~~--  359 (482)
T 3me5_A          297 TLRDISECFPAQRVTLAQLLDPMV------E--AKY--ILT-----PVLWKYLYRYAKKHQARGNGFGYGMVYPNNPQ--  359 (482)
T ss_dssp             CGGGGGGGSCSSCCCTGGGSCSSC------C--GGG--BCC-----HHHHHHHHHHHHC----------CEECTTSGG--
T ss_pred             CccccccccCCCcccHHHHhhccc------c--ccc--ccC-----HHHHHHHHHHHHhhhcccCCcccceecCCccc--
Confidence            2      24556679999885221      0  000  000     0111111110    0011110 0   000000  


Q ss_pred             HHhhcc---------cce-e---e-------------ecCccccCCChhhHHHHhcCCCC--CcccCCCChHHHHHhhhh
Q 006634          432 LHRSEK---------LNL-V---W-------------VGAYKLGPVDPEHIELILGYPSN--HTQAAGNSLTARLESLRH  483 (637)
Q Consensus       432 l~~c~~---------~nl-v---W-------------~g~~~~~ple~~E~E~i~GfP~~--~T~~~~~~~teR~k~Lgn  483 (637)
                       ..|+.         .++ +   |             ....+++.|+|.|+.||+|||..  ++..+.++.+.+||.+||
T Consensus       360 -~~~~Ti~a~~~k~gs~~~i~~~~~~~~~~~~~~~~~~~~~~~R~lTprE~~rlqgFp~~~~~~~~~~~s~~~~y~q~GN  438 (482)
T 3me5_A          360 -SVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDPLNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGN  438 (482)
T ss_dssp             -GGTCCBCCC---CCSSSEECCCCCHHHHHHCTTCTTGGGGCCEECCHHHHHHHHTSSCTTCCCSCCCSCHHHHHHHHHT
T ss_pred             -ccceeeEEeeeccCcceeecccccccCCccccccccccCCCcccCCHHHHHHHcCCCCccccceeccCCHHHHHHHcCC
Confidence             00100         011 1   1             01357899999999999999943  344458999999999999


Q ss_pred             hhcccchhhhhccccccC
Q 006634          484 CFQTDTLGYHLSVLKSMF  501 (637)
Q Consensus       484 sfqvdtv~~~lsvLK~~f  501 (637)
                      +..++++..+...|+.++
T Consensus       439 sV~v~v~~~i~~~l~~~l  456 (482)
T 3me5_A          439 SVVVPVFAAVAKLLEPKI  456 (482)
T ss_dssp             SCCHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHH
Confidence            999999999887776643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=98.72  E-value=9.2e-09  Score=107.50  Aligned_cols=182  Identities=13%  Similarity=0.117  Sum_probs=104.2

Q ss_pred             CCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhcccccccccCC-CCCC-CCCCCCC---CC
Q 006634          308 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLHNLP-TTNR-FHIPPEP---PM  373 (637)
Q Consensus       308 ~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~hNLP-~~~R-~~~~p~~---p~  373 (637)
                      .+|.||++|||..+-.    ..|..|.+.|    |.+...++||..| .|++|+|.|+=-.- ..+. ....|.|   +.
T Consensus       111 ~~P~~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~~iv~~~~~~~~~~~~fP~~~~~~~  190 (327)
T 2c7p_A          111 KKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNT  190 (327)
T ss_dssp             HCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCCCCCCCCCCCC
T ss_pred             ccCcEEEEeCcHHHHhccccHHHHHHHHHHHhCCCEEEEEEEEHHHcCCCccceEEEEEEEeCCCCcccccCCCCcCCCC
Confidence            5899999999998864    3566776666    6788999999999 99999999984321 1110 0122332   57


Q ss_pred             ccccccCCC--CCCCC-C-----cCcccccceecccCcchhHHH-HHHHHHHhhhc-CCCchhhhHHHHHh----hc-cc
Q 006634          374 TIQDAIPHT--KKWWP-S-----WDTRKHLSCINSGTSGISQLC-ERFEKLLRDSR-GVLSSQQQRDILHR----SE-KL  438 (637)
Q Consensus       374 ti~e~lp~~--~~~wp-~-----wd~r~k~~ci~t~~~~~~~l~-~ri~~~~~~~~-~~~~~~~q~~vl~~----c~-~~  438 (637)
                      |+.|++...  ..+|. +     |.-..+.......  ....+. ..... ..+.. +.+...    |...    +. ..
T Consensus       191 tl~d~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~T----i~~~~~~~~~~~~  263 (327)
T 2c7p_A          191 FVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKT--VRLGIVGKGGQG-ERIYSTRGIAIT----LSAYGGGIFAKTG  263 (327)
T ss_dssp             CGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSC--CEEEESTTCCTT-CEEEETTSCBCC----CCSSCCSTTTTTC
T ss_pred             cHHHHhcccCCcccccccCCcceeEeeccccCccch--hhhhhccCCccc-cccccCCCCcCc----eecCCCCccCCCC
Confidence            899998421  11111 0     0000000000000  000000 00000 00000 000000    0000    11 11


Q ss_pred             ceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcccccc
Q 006634          439 NLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKSM  500 (637)
Q Consensus       439 nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~~  500 (637)
                      +.+.  +.+.+.|++.|+.||+|||++|+.  ..+.++++|.+||+..+....++...|+..
T Consensus       264 ~~~~--~~~~R~LT~rE~aRLQgFPd~f~f--~gs~~~~ykqIGNAVp~~l~~~Ia~~i~~~  321 (327)
T 2c7p_A          264 GYLV--NGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGSS  321 (327)
T ss_dssp             EEEE--TTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccCC--CCCCcCCCHHHHHHHCCCCcCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHHH
Confidence            2232  677899999999999999999997  479999999999999998888776666543

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=98.71  E-value=1.6e-08  Score=92.20  Aligned_cols=98  Identities=19%  Similarity=0.222  Sum_probs=69.8

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK   80 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~   80 (637)
                      ||||.+.|.||++.+|. |.+.++|-|++|..|+..+-...+          .+.  .+. ..+..+..    ......+
T Consensus        18 MGFp~~~~~kAl~~~g~-~~e~amewL~~h~~L~d~~~d~~~----------~e~--~l~-~~~~~~~~----~~~~~~~   79 (118)
T 4ae4_A           18 MGYSYECVLRAMKAAGA-NIEQILDYLFAHGQLCEKGFDPLL----------VEE--ALE-MHQCSEEK----MMEFLQL   79 (118)
T ss_dssp             TTCCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHTTCCHHH----------HHH--HHH-HCSSCHHH----HHHHHHH
T ss_pred             cCCCHHHHHHHHHHHCc-CHHHHHHHHHHhchhcccCCChhh----------hHH--HHH-hccCCccc----cccCHHH
Confidence            99999999999999999 999999999999988754211000          000  000 00000000    0123456


Q ss_pred             HHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           81 RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        81 ~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      +..|+.|||+++.|.+|+.+++-+  ++.=+|.|++.-
T Consensus        80 v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~~~  115 (118)
T 4ae4_A           80 MSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMARA  115 (118)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHC
T ss_pred             HHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHhc
Confidence            899999999999999999999987  589999999864

>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=98.65  E-value=4.3e-09  Score=105.72  Aligned_cols=60  Identities=17%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             ccccCCCC-ccccccccccchhhHHHhhhhhccCCceeecccccchhcccccccccCCCCCC
Q 006634          304 NKVVAQPP-YFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNR  364 (637)
Q Consensus       304 ~~~~~~pp-fF~yeNV~~~~~~~w~~IsrfL~~i~Pe~vds~~fsaa~R~Rgy~hNLP~~~R  364 (637)
                      |+...++| ||++|||..|.......|.+||. +.+.+|||.+|.+++|+|.||+|+|.+++
T Consensus       116 Pk~~~~~P~~fv~ENV~gL~~~~~~~i~~~l~-~~~~vLnA~dfgvpQrRr~f~g~~~~~~~  176 (230)
T 2qrv_B          116 PKPGSPRPFFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRS  176 (230)
T ss_dssp             CCSSCCSCCEEEEEECSCSCHHHHHHHHHHHT-SCCEECCCCCSCC----CEEEECSTTSST
T ss_pred             cCcccCCCcEEEEeccHHhhhccHHHHHHHHc-CCcEEEEcccCCcCcccEEEEeecCCCCc
Confidence            44333345 67899999998888899999995 79999999999999999999999998865

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=98.63  E-value=3.1e-08  Score=103.74  Aligned_cols=54  Identities=19%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             cCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccc
Q 006634          444 GAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVL  497 (637)
Q Consensus       444 g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvL  497 (637)
                      .+.+++.|++.|+.||+|||++|+..++++.+++||.+||+..|+.+..++..|
T Consensus       288 h~~~~R~lT~RE~aRLqgFPd~f~f~g~~s~~~~ykqiGNAVpv~v~~~I~~~l  341 (343)
T 1g55_A          288 LILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKIL  341 (343)
T ss_dssp             HTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred             CCCCccccCHHHHHHHcCCChhhccCCCCCHHHHHHHhcCcccHHHHHHHHHHH
Confidence            466789999999999999999999876789999999999999999888776544

>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*

Probab=98.58  E-value=1.1e-07  Score=86.60  Aligned_cols=103  Identities=13%  Similarity=0.127  Sum_probs=69.7

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCC--CC-CCcccc-cchhh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTN--ED-KSDETL-YGTME  151 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~--~e-~~~e~~-~~~~~  151 (637)
                      +..+.+..|+.||||++.|.+|+..+|. + ++.++++|++++.+...+-      +|.+...  +- ..++.- ....+
T Consensus         7 ~e~~~v~~l~~MGFp~~~~~kAl~~~g~-~-~e~amewL~~h~~L~d~~~------d~~~~e~~l~~~~~~~~~~~~~~~   78 (118)
T 4ae4_A            7 SERQCVETVVNMGYSYECVLRAMKAAGA-N-IEQILDYLFAHGQLCEKGF------DPLLVEEALEMHQCSEEKMMEFLQ   78 (118)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHCS-C-HHHHHHHHHHHHHHHHTTC------CHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHCc-C-HHHHHHHHHHhchhcccCC------ChhhhHHHHHhccCCccccccCHH
Confidence            5677889999999999999999999998 5 5999999999986543211      0000000  00 000000 01124


Q ss_pred             hHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634          152 ITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  188 (637)
Q Consensus       152 k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A  188 (637)
                      ++..|..|||++++|.-|+-+++.|  ++-=+|-+++
T Consensus        79 ~v~~L~eMGF~~~~a~~AL~~~~nd--~erAlewL~~  113 (118)
T 4ae4_A           79 LMSKFKEMGFELKDIKEVLLLHNND--QDNALEDLMA  113 (118)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence            5679999999999999999999987  3444444443

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=98.27  E-value=7.2e-07  Score=102.22  Aligned_cols=55  Identities=7%  Similarity=0.042  Sum_probs=44.2

Q ss_pred             ccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhh
Q 006634          437 KLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYH  493 (637)
Q Consensus       437 ~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~  493 (637)
                      ..+..|+-+.+.+.|+|.|+.||+|||++|+..  -+.+++||.+||+.-+.....+
T Consensus       679 ~~~~~~iHp~~~R~LTpRE~ARLQgFPD~y~f~--Gs~~~~ykQIGNAVpp~lA~aI  733 (784)
T 4ft4_B          679 PHNQVIIHPTQARVLTIRENARLQGFPDYYRLF--GPIKEKYIQVGNAVAVPVARAL  733 (784)
T ss_dssp             SSSSEEECSSSSSBCCHHHHHHHTTCCTTCCCC--SCHHHHHHHHHHSCCHHHHHHH
T ss_pred             CCCCeecCCCCCcCCcHHHHHHHCCCCCCCEeC--CCHHHHHhhccCCCCHHHHHHH
Confidence            334445556788999999999999999999874  4899999999999866654444

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=98.09  E-value=1.5e-05  Score=72.64  Aligned_cols=106  Identities=19%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCcc-------cccchh
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDE-------TLYGTM  150 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e-------~~~~~~  150 (637)
                      .+.+..|+.||||+..+.+|+..||..+ ++.-+++|+.++.-...+..-  .....++.. ....+       .+....
T Consensus         4 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~~~~d~di~epl--~~~~~~s~~-~~~~~~l~~~~~~~~~~e   79 (126)
T 2lbc_A            4 ESSVMQLAEMGFPLEACRKAVYFTGNMG-AEVAFNWIIVHMEEPDFAEPL--TMPGYGGAA-SAGASVFGASGLDNQPPE   79 (126)
T ss_dssp             THHHHHHHTTSSCCHHHHHHHHHHTSCC-HHHHHHHHHHGGGCSSSSCTT--CCSSCCSSS-SSCCCCSTTSSCCCCCCH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHHhcccccccccc--ccccccccc-ccchhhhcccccccCcCH
Confidence            3578899999999999999999998854 689999999986533211000  000000000 00000       111234


Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhc
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSG  189 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aa  189 (637)
                      +++..|+.|||++++|..|+..+|-+  ++.-++.++..
T Consensus        80 ~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~  116 (126)
T 2lbc_A           80 EIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSH  116 (126)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            56779999999999999999999874  66667777653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.98  E-value=2.6e-06  Score=90.61  Aligned_cols=53  Identities=13%  Similarity=0.178  Sum_probs=41.6

Q ss_pred             CccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634          445 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  499 (637)
Q Consensus       445 ~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~  499 (637)
                      +.+-++|++-|.-||+|||++|...  .+.++.+|.+||+.-+.....+-..++.
T Consensus       313 P~~~R~lTvRE~ARlQsFPD~f~f~--g~~~~~~~qIGNAVPp~la~aia~~I~~  365 (376)
T 3g7u_A          313 PYHPRVITPREAARLQGFPDWFRFH--VTKWHSFRQIGNSVSPIVAEYILKGLYN  365 (376)
T ss_dssp             SSSSSBCCHHHHHHHHTCCTTCCCC--SSHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CccCcCCCHHHHHHhCCCCcceEEC--CChHHhheeeecCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999884  5788889999999876654444444443

>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}

Probab=97.94  E-value=4.9e-05  Score=69.30  Aligned_cols=102  Identities=18%  Similarity=0.157  Sum_probs=66.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCC--c-cccchh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPN--V-MDEGLH   77 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~--~-~~~s~~   77 (637)
                      |||+++.+.||+...|..+.+.-++-|+....-.            ..++.-  ..+..........+..  . ......
T Consensus        13 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~~d~------------di~epl--~~~~~~s~~~~~~~~l~~~~~~~~~~   78 (126)
T 2lbc_A           13 MGFPLEACRKAVYFTGNMGAEVAFNWIIVHMEEP------------DFAEPL--TMPGYGGAASAGASVFGASGLDNQPP   78 (126)
T ss_dssp             TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGGGCS------------SSSCTT--CCSSCCSSSSSCCCCSTTSSCCCCCC
T ss_pred             cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhcccc------------cccccc--cccccccccccchhhhcccccccCcC
Confidence            9999999999999999889999999999885311            000000  0000000000000000  0 000135


Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      .+.+..|+.|||+++.|.+|+..+|-+  ++.=+++|+...
T Consensus        79 e~~v~~L~~MGF~~~~a~~AL~~~~~~--~e~A~e~L~~~~  117 (126)
T 2lbc_A           79 EEIVAIITSMGFQRNQAIQALRATNNN--LERALDWIFSHP  117 (126)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHTSC--HHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            678899999999999999999999753  588899998753

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.79  E-value=5.5e-05  Score=79.91  Aligned_cols=86  Identities=19%  Similarity=0.146  Sum_probs=62.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-C-CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-T-GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||||||+|++++.+.+.|.  ..|++||+++.+.+..+.+....+. . ...++.+|+.++..    .+....+.
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g~--~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~----~~~~~~~~  293 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGGC--SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLR----TYRDRGEK  293 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHH----HHHHTTCC
T ss_pred             CCCeEEEeeccCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHH----HHHhcCCC
Confidence            467899999999999999999884  4689999999999999887754322 1 22345667654421    12112357


Q ss_pred             ccEEEEcCCCCCcC
Q 006634          581 IDFVICQNSVPQIP  594 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS  594 (637)
                      ||+|+..||+...+
T Consensus       294 fD~Ii~dpP~~~~~  307 (396)
T 3c0k_A          294 FDVIVMDPPKFVEN  307 (396)
T ss_dssp             EEEEEECCSSTTTC
T ss_pred             CCEEEECCCCCCCC
Confidence            99999999987665

>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*

Probab=97.72  E-value=1.7e-05  Score=85.08  Aligned_cols=54  Identities=15%  Similarity=0.173  Sum_probs=47.1

Q ss_pred             CccccccccccchhhHHHhhhhhccCCceeecccccchhcccccccccCCCCCCC
Q 006634          311 PYFFYGNVVDVSIDCWVKMSHFLYSLEPEFVNSQYFSALSRREGYLHNLPTTNRF  365 (637)
Q Consensus       311 pfF~yeNV~~~~~~~w~~IsrfL~~i~Pe~vds~~fsaa~R~Rgy~hNLP~~~R~  365 (637)
                      .||++|||..|......+|.+||. +.+.+|||++|.+++|+|-||+|+|+++|.
T Consensus       280 ~~fv~ENV~gL~~~~~~~i~~~L~-v~~~VLnA~dyGVPQrRrRf~g~~~~~~~~  333 (386)
T 2pv0_B          280 FFWMFVDNLVLNKEDLDVASRFLE-MEPVTIPDVHGGSLQNAVRVWSNIPAIRSR  333 (386)
T ss_dssp             CEEEEEECSCSCHHHHHHHHHHTT-SCCCEEECCCSSSCCCEEEEEECSSSSSTT
T ss_pred             cEEEEEechhhhhcchHHHHHHHc-CCeEEEEccccCccccccEEEEECCCcCCc
Confidence            377899999998888889999995 899999999997776666699999999873

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.56  E-value=0.00019  Score=67.49  Aligned_cols=78  Identities=21%  Similarity=0.186  Sum_probs=59.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.|++...+.+.|.  ..++++|+++.+.+..+.+....+. ...++.+|+.++.           +.||
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-----------~~~D  114 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLGA--KEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN-----------SRVD  114 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC-----------CCCS
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC-----------CCCC
Confidence            457899999999999999999885  3588999999999888876543321 2234567776653           2699


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+..||+...+
T Consensus       115 ~v~~~~p~~~~~  126 (207)
T 1wy7_A          115 IVIMNPPFGSQR  126 (207)
T ss_dssp             EEEECCCCSSSS
T ss_pred             EEEEcCCCcccc
Confidence            999999976554

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.54  E-value=0.00012  Score=76.36  Aligned_cols=85  Identities=15%  Similarity=0.073  Sum_probs=62.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||||||.|++++.+.+.|.   .|++||+++.+.+..+.+....+...  ..++.+|+.++..    .+....+.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga---~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~----~~~~~~~~  225 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGA---EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQ----REERRGST  225 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC---EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHH----HHHHHTCC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHH----HHHhcCCC
Confidence            356899999999999999999986   47899999999999988765433221  2345677765422    11112357


Q ss_pred             ccEEEEcCCCCCcC
Q 006634          581 IDFVICQNSVPQIP  594 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS  594 (637)
                      ||+|+..|||.+.+
T Consensus       226 fD~Ii~dPP~~~~~  239 (332)
T 2igt_A          226 YDIILTDPPKFGRG  239 (332)
T ss_dssp             BSEEEECCCSEEEC
T ss_pred             ceEEEECCccccCC
Confidence            99999999997655

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.50  E-value=0.00011  Score=75.51  Aligned_cols=82  Identities=16%  Similarity=0.123  Sum_probs=60.9

Q ss_pred             cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634          500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       500 ~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      ++..+-+|||+|||+|++++.+.+.|-  .-|+++|+|+.+.+.++.+-...+-.+ ..++.+|.+++..         .
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g~--~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~---------~  190 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------E  190 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------C
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhcC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc---------c
Confidence            345678999999999999998877774  247899999999999988765432222 1245677776543         2


Q ss_pred             CCccEEEEcCCCCC
Q 006634          579 GSIDFVICQNSVPQ  592 (637)
Q Consensus       579 g~~DLVIGGpPCQ~  592 (637)
                      +.+|.|+-++|+-.
T Consensus       191 ~~~D~Vi~~~p~~~  204 (278)
T 3k6r_A          191 NIADRILMGYVVRT  204 (278)
T ss_dssp             SCEEEEEECCCSSG
T ss_pred             cCCCEEEECCCCcH
Confidence            46999999999754

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=97.49  E-value=0.00015  Score=72.99  Aligned_cols=80  Identities=16%  Similarity=0.129  Sum_probs=61.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+-+|||+|||.|++++.+.+.|..  .|+++|+++.+.+..+.+....+... ..++.+|+.++..         .+.
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~--~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~---------~~~  192 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA--KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------ENI  192 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC--EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CSC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc---------cCC
Confidence            34678999999999999999998864  57899999999998887765433222 2256778876653         247


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      ||+|+..+|+..
T Consensus       193 fD~Vi~~~p~~~  204 (278)
T 2frn_A          193 ADRILMGYVVRT  204 (278)
T ss_dssp             EEEEEECCCSSG
T ss_pred             ccEEEECCchhH
Confidence            999999999653

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=97.43  E-value=0.00019  Score=69.20  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.|++.+.|.+.|.   .|+++|+++.+.+..+.+....+. ....++.+|+.++.         ..+.|
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---------~~~~~  145 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGM---RVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA---------SFLKA  145 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG---------GGCCC
T ss_pred             CCCEEEECccccCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc---------ccCCC
Confidence            467899999999999999999984   478999999999888876654321 11224566766543         12579


Q ss_pred             cEEEEcCCCCCcCc
Q 006634          582 DFVICQNSVPQIPN  595 (637)
Q Consensus       582 DLVIGGpPCQ~FS~  595 (637)
                      |+|+..+||..+..
T Consensus       146 D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          146 DVVFLSPPWGGPDY  159 (241)
T ss_dssp             SEEEECCCCSSGGG
T ss_pred             CEEEECCCcCCcch
Confidence            99999999998764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=97.38  E-value=0.00022  Score=84.70  Aligned_cols=48  Identities=6%  Similarity=-0.023  Sum_probs=38.8

Q ss_pred             cccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcc
Q 006634          447 KLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSV  496 (637)
Q Consensus       447 ~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsv  496 (637)
                      +.++|++-|..||+|||++|...  -+.+++++.+||+.-+.....+...
T Consensus       946 ~~R~lt~rE~arlQ~fPd~~~f~--g~~~~~~~qiGNaVp~~~~~~i~~~  993 (1002)
T 3swr_A          946 QHRVVSVRECARSQGFPDTYRLF--GNILDKHRQVGNAVPPPLAKAIGLE  993 (1002)
T ss_dssp             SSSBCCHHHHHHHTTCCTTCCCC--SSHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             cccCCCHHHHHHhCCCCcceEEc--CChHHHheeeeccCCHHHHHHHHHH
Confidence            55889999999999999999885  4788999999999876654444333

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.33  E-value=0.00045  Score=71.68  Aligned_cols=76  Identities=13%  Similarity=0.164  Sum_probs=56.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ..+-+|||||||+|++++. .+ |.  ..|+++|+++.+.+..+.+....+.. ...++.+|+.++.           +.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~--~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-----------~~  258 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NA--KKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-----------VK  258 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-----------CC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CC--CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-----------CC
Confidence            3567899999999999888 55 42  45889999999999988876543321 2235567776543           47


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      ||+|+..||...
T Consensus       259 fD~Vi~dpP~~~  270 (336)
T 2yx1_A          259 GNRVIMNLPKFA  270 (336)
T ss_dssp             EEEEEECCTTTG
T ss_pred             CcEEEECCcHhH
Confidence            999999988654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=97.25  E-value=0.00048  Score=62.04  Aligned_cols=83  Identities=16%  Similarity=0.213  Sum_probs=58.4

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ++.+-+|||+.||.|.+...+.+.|..   ++++|+++.+.+..+.+....+. ...+..+|+.+..    .......+.
T Consensus        39 ~~~~~~vLD~GcG~G~~~~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~----~~~~~~~~~  110 (171)
T 1ws6_A           39 YPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFL----PEAKAQGER  110 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHH----HHHHHTTCC
T ss_pred             ccCCCeEEEeCCCcCHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHH----HhhhccCCc
Confidence            435678999999999999999999864   89999999999888876654322 2234556665421    111111236


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      +|+|+..+|..
T Consensus       111 ~D~i~~~~~~~  121 (171)
T 1ws6_A          111 FTVAFMAPPYA  121 (171)
T ss_dssp             EEEEEECCCTT
T ss_pred             eEEEEECCCCc
Confidence            99999988864

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=97.22  E-value=0.00035  Score=74.69  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||+|||.|++++.+.+.|.  + |++||+++.+.+..+.+....+... .+..+|+.++-    .   ...+.||
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga--~-V~avDis~~al~~a~~n~~~ng~~~-~~~~~D~~~~l----~---~~~~~fD  282 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGA--Y-ALAVDKDLEALGVLDQAALRLGLRV-DIRHGEALPTL----R---GLEGPFH  282 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--E-EEEEESCHHHHHHHHHHHHHHTCCC-EEEESCHHHHH----H---TCCCCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCC--e-EEEEECCHHHHHHHHHHHHHhCCCC-cEEEccHHHHH----H---HhcCCCC
Confidence            477999999999999999999886  3 8999999999998888765443222 23355554321    1   1124599


Q ss_pred             EEEEcCCC
Q 006634          583 FVICQNSV  590 (637)
Q Consensus       583 LVIGGpPC  590 (637)
                      +|+.-|||
T Consensus       283 ~Ii~dpP~  290 (393)
T 4dmg_A          283 HVLLDPPT  290 (393)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999999

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=97.20  E-value=0.00031  Score=65.52  Aligned_cols=81  Identities=19%  Similarity=0.354  Sum_probs=58.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+||||+||.|++.+.+...|.  ..|+++|+++.+.+..+.+....+.....++.+|+.++...    +  ..+.||
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~----~--~~~~fD  115 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGA--ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAA----G--TTSPVD  115 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC--SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHH----C--CSSCCS
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCC--CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhh----c--cCCCcc
Confidence            457899999999999997777775  35889999999999888876554322223456676543210    0  135799


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+..+|..
T Consensus       116 ~i~~~~p~~  124 (189)
T 3p9n_A          116 LVLADPPYN  124 (189)
T ss_dssp             EEEECCCTT
T ss_pred             EEEECCCCC
Confidence            999998854

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.19  E-value=0.00069  Score=68.04  Aligned_cols=80  Identities=19%  Similarity=0.132  Sum_probs=59.7

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +..+-+|||||||+|++++.+.+.+-. ..|+++|+++.+.+..+.+....+.....++.+|+.++ ..        .+.
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~-~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------~~~  186 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKP-KLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------KDV  186 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCC-SEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------TTC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------cCC
Confidence            345678999999999999998876422 25789999999999888876543322334667888776 32        247


Q ss_pred             ccEEEEcCCC
Q 006634          581 IDFVICQNSV  590 (637)
Q Consensus       581 ~DLVIGGpPC  590 (637)
                      +|+|+-.+|.
T Consensus       187 ~D~Vi~d~p~  196 (272)
T 3a27_A          187 ADRVIMGYVH  196 (272)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEECCcc
Confidence            9999999996

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.17  E-value=0.00051  Score=65.49  Aligned_cols=77  Identities=14%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +.+||||+||.|.+++.+.+.|.  ..|++||+++.+.+..+.+....+.....++.+|+.++..       ...+.||+
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~--~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~-------~~~~~fD~  125 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA--AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA-------QKGTPHNI  125 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS-------SCCCCEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh-------hcCCCCCE
Confidence            56899999999999998777775  3588999999999998887654432122244566544211       12257999


Q ss_pred             EEEcCC
Q 006634          584 VICQNS  589 (637)
Q Consensus       584 VIGGpP  589 (637)
                      |+..+|
T Consensus       126 V~~~~p  131 (202)
T 2fpo_A          126 VFVDPP  131 (202)
T ss_dssp             EEECCS
T ss_pred             EEECCC
Confidence            999888

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.16  E-value=0.00057  Score=72.37  Aligned_cols=86  Identities=16%  Similarity=0.174  Sum_probs=60.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||||||.|++++.+.+.|.  ..|++||+++.+.+..+.+....+..  ...++.+|+.++    +..+......
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~ga--~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~----l~~~~~~~~~  285 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDY----FKYARRHHLT  285 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHH----HHHHHHTTCC
T ss_pred             CCCeEEEEeeccCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHH----HHHHHHhCCC
Confidence            457899999999999999988875  35889999999999888877544322  223456676542    2222112347


Q ss_pred             ccEEEEcCCCCCcC
Q 006634          581 IDFVICQNSVPQIP  594 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS  594 (637)
                      ||+|+.-||+-+.+
T Consensus       286 fD~Ii~DPP~~~~~  299 (385)
T 2b78_A          286 YDIIIIDPPSFARN  299 (385)
T ss_dssp             EEEEEECCCCC---
T ss_pred             ccEEEECCCCCCCC
Confidence            99999999986443

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=97.10  E-value=0.00055  Score=65.20  Aligned_cols=79  Identities=16%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC--CCCccccccccccChhhHHHhhhccCC-
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ--TGELVQIEDIQALTTKKFESLIHKLGS-  580 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~--~g~l~~~~DI~~Lt~~~Ie~l~~~~g~-  580 (637)
                      +.+||||+||.|++++.+...|.  ..|+++|+++.+.+..+.+....+.  ....++.+|+.++...      ...+. 
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~~~~  125 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQA--KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQ------PQNQPH  125 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC--SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTS------CCSSCC
T ss_pred             CCeEEEcCCccCHHHHHHHHccC--CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHh------hccCCC
Confidence            56899999999999998777775  3588999999999988877654322  1222445665543210      01246 


Q ss_pred             ccEEEEcCCC
Q 006634          581 IDFVICQNSV  590 (637)
Q Consensus       581 ~DLVIGGpPC  590 (637)
                      ||+|+..+|.
T Consensus       126 fD~I~~~~~~  135 (201)
T 2ift_A          126 FDVVFLDPPF  135 (201)
T ss_dssp             EEEEEECCCS
T ss_pred             CCEEEECCCC
Confidence            9999999883

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.08  E-value=0.00098  Score=70.26  Aligned_cols=86  Identities=20%  Similarity=0.138  Sum_probs=61.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||||||+|++++.+.+.|.  ..|++||+++.+.+..+.+....+.. ...++.+|+.++..    .+....+.|
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~--~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~----~~~~~~~~f  290 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEME----KLQKKGEKF  290 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHH----HHHhhCCCC
Confidence            567899999999999999998875  45899999999999888877543221 12245566654321    111123579


Q ss_pred             cEEEEcCCCCCcC
Q 006634          582 DFVICQNSVPQIP  594 (637)
Q Consensus       582 DLVIGGpPCQ~FS  594 (637)
                      |+|+.-||+-..+
T Consensus       291 D~Vi~dpP~~~~~  303 (396)
T 2as0_A          291 DIVVLDPPAFVQH  303 (396)
T ss_dssp             EEEEECCCCSCSS
T ss_pred             CEEEECCCCCCCC
Confidence            9999999985544

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.06  E-value=0.00061  Score=68.28  Aligned_cols=87  Identities=16%  Similarity=0.186  Sum_probs=57.8

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||++||.||.+..+.++  |-  ..|+++|+++...+.++.+....+.....+..+|+.++...    +....+.
T Consensus        83 ~g~~VLDlgaG~G~~t~~la~~~~~~--~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~----~~~~~~~  156 (274)
T 3ajd_A           83 EDDFILDMCAAPGGKTTHLAQLMKNK--GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDY----LLKNEIF  156 (274)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHHTTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHH----HHHTTCC
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCC--CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchh----hhhcccc
Confidence            4678999999999999888763  31  24789999999998888776544322233445666544211    0011357


Q ss_pred             ccEEEEcCCCCCcCc
Q 006634          581 IDFVICQNSVPQIPN  595 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS~  595 (637)
                      ||+|+..+||.++..
T Consensus       157 fD~Vl~d~Pcs~~g~  171 (274)
T 3ajd_A          157 FDKILLDAPCSGNII  171 (274)
T ss_dssp             EEEEEEEECCC----
T ss_pred             CCEEEEcCCCCCCcc
Confidence            999999999998764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=96.99  E-value=0.0013  Score=61.65  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.|++...+.+.|.  ..++++|+++.+....+.+..     ...++.+|+.++.           +.||
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~-----------~~~D  112 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLLGA--ESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  112 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTB--SEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEEeCCccHHHHHHHHcCC--CEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC-----------CCee
Confidence            457899999999999999998875  358999999999888876532     2235677877653           3799


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+..||-..+.
T Consensus       113 ~v~~~~p~~~~~  124 (200)
T 1ne2_A          113 TWIMNPPFGSVV  124 (200)
T ss_dssp             EEEECCCC----
T ss_pred             EEEECCCchhcc
Confidence            999998866544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.95  E-value=0.00097  Score=69.93  Aligned_cols=84  Identities=10%  Similarity=0.060  Sum_probs=58.5

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc------
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK------  577 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~------  577 (637)
                      +-+|||||||+|++++.+.+.+   .-|++||+++.+.+..+.+....+.....++.+|+.++..    .+...      
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~---~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~----~~~~~~~~~~l  286 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNF---DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQ----AMNGVREFNRL  286 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGS---SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHH----HHSSCCCCTTG
T ss_pred             CCEEEEccCCCCHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHH----HHhhccccccc
Confidence            4579999999999999888744   3588999999999988887654332223345667654321    11110      


Q ss_pred             ------cCCccEEEEcCCCCCcC
Q 006634          578 ------LGSIDFVICQNSVPQIP  594 (637)
Q Consensus       578 ------~g~~DLVIGGpPCQ~FS  594 (637)
                            .+.||+|+--||+.+..
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~g~~  309 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRSGLD  309 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTTCCC
T ss_pred             cccccccCCCCEEEECcCccccH
Confidence                  02699999999987653

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.92  E-value=0.00079  Score=54.84  Aligned_cols=42  Identities=19%  Similarity=0.278  Sum_probs=37.4

Q ss_pred             chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      .+..+.+..|+.|||+++.+.+|++.+|.+  ++..+|.|+++.
T Consensus        17 ~se~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~   58 (63)
T 1wgn_A           17 PSERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            355667899999999999999999999986  699999999984

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=96.87  E-value=0.0023  Score=60.97  Aligned_cols=83  Identities=14%  Similarity=0.153  Sum_probs=58.8

Q ss_pred             CCCCCcccccCCC-CChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634          501 FPGGLTMLSVFSG-IGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       501 f~~~l~vLsLFSG-iGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+.+|||+.|| .|.+.+.+.+. +.   .++++|+++.+.+..+.+....+. ...++.+|+..+..  +     ..
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~--~-----~~  121 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNC---KVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG--V-----VE  121 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT--T-----CC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh--c-----cc
Confidence            3467899999999 99999999887 54   478999999999888876654332 23345677654332  1     12


Q ss_pred             CCccEEEEcCCCCCcC
Q 006634          579 GSIDFVICQNSVPQIP  594 (637)
Q Consensus       579 g~~DLVIGGpPCQ~FS  594 (637)
                      +.||+|+.-||+-...
T Consensus       122 ~~fD~I~~npp~~~~~  137 (230)
T 3evz_A          122 GTFDVIFSAPPYYDKP  137 (230)
T ss_dssp             SCEEEEEECCCCC---
T ss_pred             CceeEEEECCCCcCCc
Confidence            5799999999986654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=96.87  E-value=0.0018  Score=68.09  Aligned_cols=85  Identities=20%  Similarity=0.129  Sum_probs=60.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||+|||.|++++.+.+.+   .-|+++|+++.+....+.+....+.....++.+|+.++..    .+....+.||
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~---~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~----~~~~~~~~fD  281 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLR----RLEKEGERFD  281 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHH----HHHHTTCCEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHH----HHHhcCCCee
Confidence            45789999999999999988763   4688999999999988877654332223345666654321    1211235799


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+.-||+-..+
T Consensus       282 ~Ii~dpP~~~~~  293 (382)
T 1wxx_A          282 LVVLDPPAFAKG  293 (382)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEECCCCCCCC
Confidence            999999985544

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.82  E-value=0.0025  Score=58.21  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||+.||.|++...+.+.|.  ..++++|+++.+.+..+.+....+.. ...++.+|+.+...    .+....+.|
T Consensus        44 ~~~~vLD~GcG~G~~~~~~~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~f  117 (187)
T 2fhp_A           44 DGGMALDLYSGSGGLAIEAVSRGM--DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQF  117 (187)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHH----HHHHTTCCE
T ss_pred             CCCCEEEeCCccCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHH----HHHhcCCCC
Confidence            356899999999999998777764  35789999999988888766543211 12245566654321    111123579


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+..+|
T Consensus       118 D~i~~~~~  125 (187)
T 2fhp_A          118 DLVLLDPP  125 (187)
T ss_dssp             EEEEECCC
T ss_pred             CEEEECCC
Confidence            99998877

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=96.76  E-value=0.0024  Score=62.92  Aligned_cols=83  Identities=16%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.|++.+.+.+.+-.  .++++|+++.+....+.+....+... ..++.+|+.++... +     ..+.|
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~~--~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~-~-----~~~~f  120 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTKA--KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDL-I-----PKERA  120 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCCC--EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGT-S-----CTTCE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcCC--cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhh-h-----ccCCc
Confidence            4678999999999999999888742  57899999999988887765443222 23566788765421 0     13579


Q ss_pred             cEEEEcCCCCCc
Q 006634          582 DFVICQNSVPQI  593 (637)
Q Consensus       582 DLVIGGpPCQ~F  593 (637)
                      |+|+.-||+-..
T Consensus       121 D~Ii~npPy~~~  132 (259)
T 3lpm_A          121 DIVTCNPPYFAT  132 (259)
T ss_dssp             EEEEECCCC---
T ss_pred             cEEEECCCCCCC
Confidence            999999998766

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.74  E-value=0.0024  Score=60.01  Aligned_cols=87  Identities=18%  Similarity=0.197  Sum_probs=61.7

Q ss_pred             hccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 006634          494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  573 (637)
Q Consensus       494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~  573 (637)
                      +..|..+.+.+.+|||+.||.|.+...+.+.|.  ..++++|+++.+.+..+.+....+.....+..+|+.+..      
T Consensus        51 ~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~------  122 (205)
T 3grz_A           51 MLGIERAMVKPLTVADVGTGSGILAIAAHKLGA--KSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV------  122 (205)
T ss_dssp             HHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC------
T ss_pred             HHHHHHhccCCCEEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC------
Confidence            333444445678999999999999999999875  357899999999888877655433222334566665432      


Q ss_pred             hhhccCCccEEEEcCCCCC
Q 006634          574 LIHKLGSIDFVICQNSVPQ  592 (637)
Q Consensus       574 l~~~~g~~DLVIGGpPCQ~  592 (637)
                          .+.+|+|+..+|.+.
T Consensus       123 ----~~~fD~i~~~~~~~~  137 (205)
T 3grz_A          123 ----DGKFDLIVANILAEI  137 (205)
T ss_dssp             ----CSCEEEEEEESCHHH
T ss_pred             ----CCCceEEEECCcHHH
Confidence                257999999887654

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=96.73  E-value=0.0022  Score=78.13  Aligned_cols=50  Identities=18%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CCCCccccccccccch----hhHHHhhhhh----ccCCceeeccccc-chhcccccccc
Q 006634          308 AQPPYFFYGNVVDVSI----DCWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYLH  357 (637)
Q Consensus       308 ~~ppfF~yeNV~~~~~----~~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~h  357 (637)
                      .+|.||++|||..+-.    ..+..|.+.|    |.|...++||..| .||+|.|.|+=
T Consensus       971 ~rPk~fv~ENV~glls~~~g~~~~~il~~L~~lGY~v~~~vLnA~dyGVPQ~R~Rvfiv 1029 (1330)
T 3av4_A          971 YRPRFFLLENVRNFVSYRRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIIL 1029 (1330)
T ss_dssp             HCCSEEEEEEEGGGGTTTTTHHHHHHHHHHHHHTCEEEEEEEEGGGGSCSBCCEEEEEE
T ss_pred             hcCcEEEEeccHHHhccCccHHHHHHHHHHHhcCCeeeEEEecHHHcCCCccccEEEEE
Confidence            5799999999999853    2455565554    6788999999999 99999999963

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=96.69  E-value=0.0036  Score=64.28  Aligned_cols=85  Identities=11%  Similarity=0.028  Sum_probs=61.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.||.+..+.+..-.--.|+++|+++...+..+.+....+.....++.+|+.++..        ..+.||
T Consensus       118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~--------~~~~fD  189 (315)
T 1ixk_A          118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE--------LNVEFD  189 (315)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG--------GCCCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhccc--------ccccCC
Confidence            467899999999999998876521112478999999998888877654432223355677766532        124799


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      +|+--+||.+...
T Consensus       190 ~Il~d~Pcsg~g~  202 (315)
T 1ixk_A          190 KILLDAPCTGSGT  202 (315)
T ss_dssp             EEEEECCTTSTTT
T ss_pred             EEEEeCCCCCccc
Confidence            9999999988764

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.68  E-value=0.0015  Score=60.65  Aligned_cols=87  Identities=14%  Similarity=0.043  Sum_probs=47.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+.||.|.+...+.+.+-. ..++++|+++.+.+..+.+....+. ...+..+|+.+    .+.......+.|
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~----~~~~~~~~~~~f  102 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPG-VSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIE----WLIERAERGRPW  102 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTT-EEEEEEECC--------------------CCHHHHHH----HHHHHHHTTCCB
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHh----hhhhhhhccCcc
Confidence            45789999999999999999988532 2578999999988877665432211 12234556554    111111123689


Q ss_pred             cEEEEcCCCCCcC
Q 006634          582 DFVICQNSVPQIP  594 (637)
Q Consensus       582 DLVIGGpPCQ~FS  594 (637)
                      |+|+..||+-...
T Consensus       103 D~i~~npp~~~~~  115 (215)
T 4dzr_A          103 HAIVSNPPYIPTG  115 (215)
T ss_dssp             SEEEECCCCCC--
T ss_pred             cEEEECCCCCCCc
Confidence            9999999986554

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.59  E-value=0.0036  Score=67.43  Aligned_cols=78  Identities=19%  Similarity=0.308  Sum_probs=59.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      ..+-+|||||||.|.+++.|.+.+.   -|+++|+++.+.+..+.+....+.. ..++.+|+.++...          .|
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~---~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~----------~f  354 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGF---NVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVK----------GF  354 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCT----------TC
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCcc----------CC
Confidence            3567899999999999999988764   4789999999998888776543322 34567787765421          58


Q ss_pred             cEEEEcCCCCCc
Q 006634          582 DFVICQNSVPQI  593 (637)
Q Consensus       582 DLVIGGpPCQ~F  593 (637)
                      |+|+--||..+.
T Consensus       355 D~Vv~dPPr~g~  366 (425)
T 2jjq_A          355 DTVIVDPPRAGL  366 (425)
T ss_dssp             SEEEECCCTTCS
T ss_pred             CEEEEcCCccch
Confidence            999999986544

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=96.57  E-value=0.0045  Score=63.97  Aligned_cols=87  Identities=10%  Similarity=0.155  Sum_probs=60.8

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||++||.||.++.+..+ +=. -.|+++|+++...+.++.+....+.....++.+|..++....     ..++.|
T Consensus       102 ~g~~VLDlcaG~G~kt~~la~~~~~~-g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~-----~~~~~f  175 (309)
T 2b9e_A          102 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  175 (309)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccc-----cccCCC
Confidence            4678999999999999887763 211 247899999999999988776543222335567877664321     113579


Q ss_pred             cEEEEcCCCCCcCc
Q 006634          582 DFVICQNSVPQIPN  595 (637)
Q Consensus       582 DLVIGGpPCQ~FS~  595 (637)
                      |+|+--+||.++..
T Consensus       176 D~Vl~D~PcSg~G~  189 (309)
T 2b9e_A          176 HYILLDPSCSGSGM  189 (309)
T ss_dssp             EEEEECCCCCC---
T ss_pred             CEEEEcCCcCCCCC
Confidence            99999999998875

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.54  E-value=0.0042  Score=57.18  Aligned_cols=84  Identities=13%  Similarity=0.104  Sum_probs=56.8

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006634          497 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  576 (637)
Q Consensus       497 LK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~  576 (637)
                      ++...+.+-+|||+.||.|.++..|.+.|.   .|+++|+++.+....+.+....+.....++..|+..+..     .  
T Consensus        16 l~~~~~~~~~vLDiGcG~G~~~~~la~~~~---~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~-----~--   85 (185)
T 3mti_A           16 LAEVLDDESIVVDATMGNGNDTAFLAGLSK---KVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDH-----Y--   85 (185)
T ss_dssp             HHTTCCTTCEEEESCCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGG-----T--
T ss_pred             HHHhCCCCCEEEEEcCCCCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHh-----h--
Confidence            445556678999999999999999998865   478999999998888776654322112233345544321     1  


Q ss_pred             ccCCccEEEEcCCC
Q 006634          577 KLGSIDFVICQNSV  590 (637)
Q Consensus       577 ~~g~~DLVIGGpPC  590 (637)
                      ..+.||+|+..+|.
T Consensus        86 ~~~~fD~v~~~~~~   99 (185)
T 3mti_A           86 VREPIRAAIFNLGY   99 (185)
T ss_dssp             CCSCEEEEEEEEC-
T ss_pred             ccCCcCEEEEeCCC
Confidence            12579999877543

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=96.54  E-value=0.0056  Score=64.33  Aligned_cols=80  Identities=19%  Similarity=0.125  Sum_probs=58.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+.+|||++||.|++.+.+.+.|.. ..++++|+++.+.+..+.+....+.. ...+..+|+.++..        ..+.
T Consensus       216 ~~~~~vLD~gCGsG~~~i~~a~~~~~-~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~--------~~~~  286 (373)
T 3tm4_A          216 LDGGSVLDPMCGSGTILIELALRRYS-GEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQ--------YVDS  286 (373)
T ss_dssp             CCSCCEEETTCTTCHHHHHHHHTTCC-SCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGG--------TCSC
T ss_pred             CCCCEEEEccCcCcHHHHHHHHhCCC-CeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCc--------ccCC
Confidence            45678999999999999999888752 24789999999998888876544321 12345677766532        1257


Q ss_pred             ccEEEEcCCC
Q 006634          581 IDFVICQNSV  590 (637)
Q Consensus       581 ~DLVIGGpPC  590 (637)
                      +|+|+.-||.
T Consensus       287 fD~Ii~npPy  296 (373)
T 3tm4_A          287 VDFAISNLPY  296 (373)
T ss_dssp             EEEEEEECCC
T ss_pred             cCEEEECCCC
Confidence            9999998884

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=96.53  E-value=0.0048  Score=60.09  Aligned_cols=86  Identities=13%  Similarity=0.030  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-c
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-L  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~-~  578 (637)
                      .+.+||||.||.|++...+.+.  +.   .++++|+++.+.+..+.+....+... ..++.+|+.+.-.+.+.   .. .
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~---~~~~  138 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALK---EESE  138 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTST---TCCS
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhh---cccC
Confidence            4678999999999988777654  43   47899999999988887665433222 23456776552101111   00 1


Q ss_pred             CCccEEEEcCCCCCcC
Q 006634          579 GSIDFVICQNSVPQIP  594 (637)
Q Consensus       579 g~~DLVIGGpPCQ~FS  594 (637)
                      +.||+|+..||+-...
T Consensus       139 ~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          139 IIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             CCBSEEEECCCCC---
T ss_pred             CcccEEEECCCCccCc
Confidence            4699999999987554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=96.52  E-value=0.0028  Score=68.02  Aligned_cols=80  Identities=9%  Similarity=0.015  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhh-c
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIH-K  577 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~-~  577 (637)
                      .+.+|||||||+|++++-+.+.  |.  .-|++||+++.+.+.++.+....+-..  ..++.+|+.++        +. .
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga--~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~--------l~~~  121 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCV--EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFF--------LRKE  121 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCE--EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHH--------HHSC
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCC--CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHH--------HHHh
Confidence            4678999999999998866552  43  458999999999999998875432211  22344554332        22 1


Q ss_pred             -cCCccEEEEcCCCCC
Q 006634          578 -LGSIDFVICQNSVPQ  592 (637)
Q Consensus       578 -~g~~DLVIGGpPCQ~  592 (637)
                       .+.||+|+--|||..
T Consensus       122 ~~~~fD~V~lDP~g~~  137 (392)
T 3axs_A          122 WGFGFDYVDLDPFGTP  137 (392)
T ss_dssp             CSSCEEEEEECCSSCC
T ss_pred             hCCCCcEEEECCCcCH
Confidence             246999999988763

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=96.47  E-value=0.0039  Score=46.57  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=32.6

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  116 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a  116 (637)
                      ..+.+..|+.|||+++.+.+|+..|+-+  ++.=+++|+.
T Consensus         4 ~e~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~~   41 (43)
T 2g3q_A            4 KSLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLLD   41 (43)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHHc
Confidence            3567899999999999999999999753  5788888875

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.45  E-value=0.0046  Score=70.75  Aligned_cols=83  Identities=19%  Similarity=0.187  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||||||.|++++.+.+.|.  .-|++||+++.+....+.+....+..  ...++.+|+.++    +.   ...+.
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga--~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~----l~---~~~~~  609 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGA--RSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAW----LR---EANEQ  609 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHH----HH---HCCCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH----HH---hcCCC
Confidence            467899999999999999988886  35889999999999988877544322  122345666542    11   12357


Q ss_pred             ccEEEEcCCCCCcC
Q 006634          581 IDFVICQNSVPQIP  594 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS  594 (637)
                      ||+|+--|||-.-|
T Consensus       610 fD~Ii~DPP~f~~~  623 (703)
T 3v97_A          610 FDLIFIDPPTFSNS  623 (703)
T ss_dssp             EEEEEECCCSBC--
T ss_pred             ccEEEECCccccCC
Confidence            99999999984333

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=96.44  E-value=0.0025  Score=65.02  Aligned_cols=100  Identities=16%  Similarity=0.064  Sum_probs=62.5

Q ss_pred             Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634          479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  556 (637)
Q Consensus       479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~  556 (637)
                      |.+|..|-++  .+...+..+..  ..+-+|||+.||.|.++..|.+.|.   .|+++|+++......+......+....
T Consensus        18 k~~Gq~fl~~~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~La~~~~---~v~~vDi~~~~~~~a~~~~~~~~~~~v   92 (299)
T 2h1r_A           18 YFQGQHLLKNPGILDKIIYAAKI--KSSDIVLEIGCGTGNLTVKLLPLAK---KVITIDIDSRMISEVKKRCLYEGYNNL   92 (299)
T ss_dssp             -----CEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHTTTSS---EEEEECSCHHHHHHHHHHHHHTTCCCE
T ss_pred             hccccceecCHHHHHHHHHhcCC--CCcCEEEEEcCcCcHHHHHHHhcCC---EEEEEECCHHHHHHHHHHHHHcCCCce
Confidence            3446666433  33444444321  3467899999999999999988874   478999999998888876543222223


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634          557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  593 (637)
Q Consensus       557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  593 (637)
                      .++.+|+.++.          ++.+|+|++-+|++..
T Consensus        93 ~~~~~D~~~~~----------~~~~D~Vv~n~py~~~  119 (299)
T 2h1r_A           93 EVYEGDAIKTV----------FPKFDVCTANIPYKIS  119 (299)
T ss_dssp             EC----CCSSC----------CCCCSEEEEECCGGGH
T ss_pred             EEEECchhhCC----------cccCCEEEEcCCcccc
Confidence            35667877654          2368999999997743

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.42  E-value=0.006  Score=63.08  Aligned_cols=80  Identities=15%  Similarity=0.114  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+|||.|++.+-+...+ -. ..++++|+|+.+.+..+.+....+.....+..+|+.++..        ..+.+
T Consensus       203 ~~~~vLD~gcGsG~~~ie~a~~~~~~-~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~--------~~~~~  273 (354)
T 3tma_A          203 PGMRVLDPFTGSGTIALEAASTLGPT-SPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPR--------FFPEV  273 (354)
T ss_dssp             TTCCEEESSCTTSHHHHHHHHHHCTT-SCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGG--------TCCCC
T ss_pred             CCCEEEeCCCCcCHHHHHHHHhhCCC-ceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcc--------ccCCC
Confidence            46789999999999988777654 11 2468999999999988887765432223356677776542        12458


Q ss_pred             cEEEEcCCCC
Q 006634          582 DFVICQNSVP  591 (637)
Q Consensus       582 DLVIGGpPCQ  591 (637)
                      |+|+.-|||-
T Consensus       274 D~Ii~npPyg  283 (354)
T 3tma_A          274 DRILANPPHG  283 (354)
T ss_dssp             SEEEECCCSC
T ss_pred             CEEEECCCCc
Confidence            9999999973

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=96.42  E-value=0.0063  Score=61.67  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=58.9

Q ss_pred             CCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+|||+.||.|.+.+.+.+. +.   .++++|+++.+.+..+.+....+... ..++.+|+.+.-    .   ..++.+
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~----~---~~f~~~  193 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKFSDA---IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF----K---EKFASI  193 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSC---EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG----G---GGTTTC
T ss_pred             CCEEEEEeCchhHHHHHHHHCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc----c---cccCCC
Confidence            468999999999999999887 43   57899999999998888765433222 235567776521    1   123344


Q ss_pred             cEEEEcCCCCCcC
Q 006634          582 DFVICQNSVPQIP  594 (637)
Q Consensus       582 DLVIGGpPCQ~FS  594 (637)
                      |+|+.-|||-+..
T Consensus       194 D~IvsnPPyi~~~  206 (284)
T 1nv8_A          194 EMILSNPPYVKSS  206 (284)
T ss_dssp             CEEEECCCCBCGG
T ss_pred             CEEEEcCCCCCcc
Confidence            9999999998776

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.41  E-value=0.0056  Score=55.95  Aligned_cols=79  Identities=15%  Similarity=0.252  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||++||.|.+...+.+.|.  ..++++|+++.+.+..+.+....+... ..++.+|+.+.    +.   ...+.|
T Consensus        31 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~----~~---~~~~~f  101 (177)
T 2esr_A           31 NGGRVLDLFAGSGGLAIEAVSRGM--SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----ID---CLTGRF  101 (177)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----HH---HBCSCE
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC--CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHh----HH---hhcCCC
Confidence            456899999999999999888874  357899999999988887665432111 12345555432    11   122569


Q ss_pred             cEEEEcCCC
Q 006634          582 DFVICQNSV  590 (637)
Q Consensus       582 DLVIGGpPC  590 (637)
                      |+|+..+|.
T Consensus       102 D~i~~~~~~  110 (177)
T 2esr_A          102 DLVFLDPPY  110 (177)
T ss_dssp             EEEEECCSS
T ss_pred             CEEEECCCC
Confidence            999988774

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=96.41  E-value=0.0054  Score=60.95  Aligned_cols=82  Identities=9%  Similarity=0.029  Sum_probs=58.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|++.+.+...- +-..++++|+++.+.+..+.+....+.....+..+|+.+.-         ..+.||
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~---------~~~~fD  178 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL---------AGQQFA  178 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG---------TTCCEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhc---------ccCCcc
Confidence            45789999999999999887541 11247899999999998887765432222334556665421         125799


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+.-|||.+.+
T Consensus       179 ~Iv~npPy~~~~  190 (276)
T 2b3t_A          179 MIVSNPPYIDEQ  190 (276)
T ss_dssp             EEEECCCCBCTT
T ss_pred             EEEECCCCCCcc
Confidence            999999998764

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.39  E-value=0.0023  Score=48.80  Aligned_cols=38  Identities=13%  Similarity=0.188  Sum_probs=33.4

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      ..+++..|+.|||+++.+.+|+..+|  + ++.-+++|+.+
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~~~--n-~e~A~~~L~~h   46 (47)
T 2ekk_A            9 NQQQLQQLMDMGFTREHAMEALLNTS--T-MEQATEYLLTH   46 (47)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHSC--S-HHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcC--C-HHHHHHHHHcC
Confidence            45688999999999999999999997  3 68999999864

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=96.38  E-value=0.0038  Score=52.40  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=36.4

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ...+++..|+.|||++++|..|+..|+-+  ++.-+|+|+..+.
T Consensus        28 ~~ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~~   69 (73)
T 1vg5_A           28 ASEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG   69 (73)
T ss_dssp             CCHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred             ccHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence            34678999999999999999999999974  6899999998653

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.34  E-value=0.0049  Score=47.64  Aligned_cols=40  Identities=13%  Similarity=0.108  Sum_probs=34.7

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      ...+++..|+.|||+++.|.+|+..+|-+  ++.-+++|++.
T Consensus         7 ~~~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~g   46 (49)
T 1ify_A            7 EYETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLTG   46 (49)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHHC
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            35678899999999999999999999974  47889999874

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.27  E-value=0.0045  Score=50.11  Aligned_cols=41  Identities=20%  Similarity=0.169  Sum_probs=36.0

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ..+++..|+.|||+++.+.+|+..++-+  ++.-+++|+..+.
T Consensus         9 ~~~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~~   49 (63)
T 2dak_A            9 PEDCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID   49 (63)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence            3567899999999999999999999874  6899999998754

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=96.26  E-value=0.0045  Score=50.47  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=35.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      +.+..|+.|||+++.|.+|+..+|..+ ++.-+++|+.++.
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewLl~~~~   50 (64)
T 1whc_A           11 TALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHED   50 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCCC-HHHHHHHHHhCCC
Confidence            478899999999999999999998655 6999999998753

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.18  E-value=0.0084  Score=59.53  Aligned_cols=89  Identities=16%  Similarity=0.068  Sum_probs=58.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh---cCCCC-CccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---SGQTG-ELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~---tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+||||.||.|.+.+.+.+.+-. ..+++||+++.+....+.+...   .+... ..++.+|+.++....+... ...
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~-~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~-~~~  113 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEK-AEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAG-LPD  113 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTT-EEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTT-CCT
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCC-CeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhc-cCC
Confidence            4578999999999999988876522 3578999999999888876543   22111 2356788877632211100 012


Q ss_pred             CCccEEEEcCCCCCc
Q 006634          579 GSIDFVICQNSVPQI  593 (637)
Q Consensus       579 g~~DLVIGGpPCQ~F  593 (637)
                      +.||+|+.-||....
T Consensus       114 ~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCEEEEEECCCC---
T ss_pred             CCcCEEEECCCCcCC
Confidence            579999999998765

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.17  E-value=0.0044  Score=67.67  Aligned_cols=85  Identities=18%  Similarity=0.138  Sum_probs=59.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||++||.||.++.+..+ +=. -.|+++|+++...+.++.+....+.....+..+|..++.     ..  ..+.|
T Consensus       105 ~g~~VLDlcaGpGgkt~~lA~~~~~~-g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~-----~~--~~~~F  176 (456)
T 3m4x_A          105 PGEKVLDLCAAPGGKSTQLAAQMKGK-GLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELV-----PH--FSGFF  176 (456)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHH-----HH--HTTCE
T ss_pred             CCCEEEEECCCcCHHHHHHHHHcCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhh-----hh--ccccC
Confidence            4679999999999999887654 211 147899999999999988765543222223345554332     11  12579


Q ss_pred             cEEEEcCCCCCcCc
Q 006634          582 DFVICQNSVPQIPN  595 (637)
Q Consensus       582 DLVIGGpPCQ~FS~  595 (637)
                      |+|+--+||.+...
T Consensus       177 D~Il~DaPCSg~G~  190 (456)
T 3m4x_A          177 DRIVVDAPCSGEGM  190 (456)
T ss_dssp             EEEEEECCCCCGGG
T ss_pred             CEEEECCCCCCccc
Confidence            99999999998875

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=96.13  E-value=0.0055  Score=62.02  Aligned_cols=100  Identities=13%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CC
Q 006634          479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TG  555 (637)
Q Consensus       479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g  555 (637)
                      |.+|..|-++  .+...+..+..  ..+-+|||+-||.|.++..|.+.|.   .|+++|+|+.....++......+. ..
T Consensus         4 k~~gq~fl~d~~i~~~i~~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~   78 (285)
T 1zq9_A            4 TGIGQHILKNPLIINSIIDKAAL--RPTDVVLEVGPGTGNMTVKLLEKAK---KVVACELDPRLVAELHKRVQGTPVASK   78 (285)
T ss_dssp             ----CCEECCHHHHHHHHHHTCC--CTTCEEEEECCTTSTTHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTSTTGGG
T ss_pred             CCCCcCccCCHHHHHHHHHhcCC--CCCCEEEEEcCcccHHHHHHHhhCC---EEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence            3455555322  33444444422  3457899999999999999998875   478999999998888776532211 12


Q ss_pred             CccccccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634          556 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  593 (637)
Q Consensus       556 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  593 (637)
                      ..++.+|+.++.          +..+|+|++..|++-.
T Consensus        79 v~~~~~D~~~~~----------~~~fD~vv~nlpy~~~  106 (285)
T 1zq9_A           79 LQVLVGDVLKTD----------LPFFDTCVANLPYQIS  106 (285)
T ss_dssp             EEEEESCTTTSC----------CCCCSEEEEECCGGGH
T ss_pred             eEEEEcceeccc----------chhhcEEEEecCcccc
Confidence            235567877653          2368999999998753

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=96.10  E-value=0.0076  Score=65.10  Aligned_cols=79  Identities=13%  Similarity=0.087  Sum_probs=57.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCCc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +-+||||+||+|+.++.|.+.|.   .|++||+|+.+....+.+....  +.....++.+|+.+.-.. +     ..+.|
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~---~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~-~-----~~~~f  164 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKAS---QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPL-I-----KTFHP  164 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCS---EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHH-H-----HHHCC
T ss_pred             CCEEEEeCCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhh-c-----cCCCc
Confidence            68899999999999999999885   4789999999999998887643  221223566787654111 1     11379


Q ss_pred             cEEEEcCCCC
Q 006634          582 DFVICQNSVP  591 (637)
Q Consensus       582 DLVIGGpPCQ  591 (637)
                      |+|+--||=.
T Consensus       165 DvV~lDPPrr  174 (410)
T 3ll7_A          165 DYIYVDPARR  174 (410)
T ss_dssp             SEEEECCEEC
T ss_pred             eEEEECCCCc
Confidence            9999888743

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=96.10  E-value=0.0081  Score=48.91  Aligned_cols=40  Identities=15%  Similarity=0.155  Sum_probs=35.4

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      .+++..|+.|||+++.|.+|+..|+-+  ++.-+++|+..+.
T Consensus        10 ~~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~   49 (63)
T 1wji_A           10 EKALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNK   49 (63)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCC
Confidence            467899999999999999999999874  6899999998754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=96.09  E-value=0.013  Score=55.18  Aligned_cols=76  Identities=22%  Similarity=0.323  Sum_probs=56.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+-||.|.+...+.+.|.   .++++|+++......+.+....+ ....+..+|+.++..        ..+.+
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~~  104 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF---EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF--------EDKTF  104 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS--------CTTCE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC--------CCCcE
Confidence            3468999999999999999999986   47899999998888777654332 233356677776531        12468


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+..++
T Consensus       105 D~v~~~~~  112 (227)
T 1ve3_A          105 DYVIFIDS  112 (227)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEcCc
Confidence            99987766

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=96.06  E-value=0.0064  Score=64.59  Aligned_cols=79  Identities=15%  Similarity=0.122  Sum_probs=54.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc---------------CCCCCcccccccccc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS---------------GQTGELVQIEDIQAL  566 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t---------------n~~g~l~~~~DI~~L  566 (637)
                      .+.+|||||||+|++++.+... |-  .-|+++|+++.+.+..+.+....               +.....++.+|+.++
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~--~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCC--CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHH
Confidence            3678999999999999887665 53  23889999999999998877543               111112233444322


Q ss_pred             ChhhHHHhhhc-cCCccEEEEcCCCC
Q 006634          567 TTKKFESLIHK-LGSIDFVICQNSVP  591 (637)
Q Consensus       567 t~~~Ie~l~~~-~g~~DLVIGGpPCQ  591 (637)
                              ... .+.||+|+--|||.
T Consensus       125 --------~~~~~~~fD~I~lDP~~~  142 (378)
T 2dul_A          125 --------MAERHRYFHFIDLDPFGS  142 (378)
T ss_dssp             --------HHHSTTCEEEEEECCSSC
T ss_pred             --------HHhccCCCCEEEeCCCCC
Confidence                    211 24699999988886

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.03  E-value=0.0083  Score=65.70  Aligned_cols=85  Identities=16%  Similarity=-0.005  Sum_probs=60.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+||||+||.||.++.+.++--.--.|+++|+++...+.++.+....+.. ..+..+|..++.     ..  ..+.||
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~-----~~--~~~~FD  172 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALA-----EA--FGTYFH  172 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHH-----HH--HCSCEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhh-----hh--ccccCC
Confidence            4689999999999999888754111114789999999999998876654333 334456655432     11  135799


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      +|+--+||.+...
T Consensus       173 ~Il~D~PcSg~G~  185 (464)
T 3m6w_A          173 RVLLDAPCSGEGM  185 (464)
T ss_dssp             EEEEECCCCCGGG
T ss_pred             EEEECCCcCCccc
Confidence            9999999998875

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=95.97  E-value=0.01  Score=65.01  Aligned_cols=85  Identities=9%  Similarity=0.063  Sum_probs=60.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||++||.||.++.+.++ +-. -.|+++|+++...+.++.+....+.....+..+|..++..     .  ..+.|
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~-g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~-----~--~~~~f  188 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNE-GAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGA-----A--VPEMF  188 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHH-----H--STTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhh-----h--ccccC
Confidence            4679999999999999888764 211 2478999999999998887654432223345566665421     0  12479


Q ss_pred             cEEEEcCCCCCcCc
Q 006634          582 DFVICQNSVPQIPN  595 (637)
Q Consensus       582 DLVIGGpPCQ~FS~  595 (637)
                      |+|+--+||.+...
T Consensus       189 D~Il~D~PcSg~G~  202 (479)
T 2frx_A          189 DAILLDAPCSGEGV  202 (479)
T ss_dssp             EEEEEECCCCCGGG
T ss_pred             CEEEECCCcCCccc
Confidence            99999999998764

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=95.97  E-value=0.013  Score=62.83  Aligned_cols=85  Identities=15%  Similarity=0.119  Sum_probs=60.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+||||+||.|.+++.|.+.+.   .|+++|+++.+.+..+.+....+.....++.+|+.+.-..    +....+.||
T Consensus       286 ~~~~VLDlgcG~G~~~~~la~~~~---~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~----~~~~~~~fD  358 (433)
T 1uwv_A          286 PEDRVLDLFCGMGNFTLPLATQAA---SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTK----QPWAKNGFD  358 (433)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSS----SGGGTTCCS
T ss_pred             CCCEEEECCCCCCHHHHHHHhhCC---EEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhh----hhhhcCCCC
Confidence            456899999999999999988854   4789999999998888776543322334567787663211    001124699


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+--||..+..
T Consensus       359 ~Vv~dPPr~g~~  370 (433)
T 1uwv_A          359 KVLLDPARAGAA  370 (433)
T ss_dssp             EEEECCCTTCCH
T ss_pred             EEEECCCCccHH
Confidence            999999987654

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.97  E-value=0.016  Score=49.68  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=36.8

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ....+..|+.|||+++.|.+|+...|..+ ++.=+++|+++..
T Consensus        29 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~n-~e~A~ewL~~h~~   70 (84)
T 1vek_A           29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHMD   70 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHhCCC
Confidence            56788999999999999999999998765 5888999998753

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=95.94  E-value=0.0088  Score=51.42  Aligned_cols=41  Identities=20%  Similarity=0.166  Sum_probs=36.6

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ..+++..|+.|||+++.|.+|+..+|-+  ++.-+++|+.++-
T Consensus        29 ~ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~~   69 (83)
T 1veg_A           29 SQESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHGG   69 (83)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence            4578999999999999999999999976  6899999998754

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=95.91  E-value=0.012  Score=57.42  Aligned_cols=85  Identities=13%  Similarity=0.114  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc--------CCCCCccccccccccChhhHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--------GQTGELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t--------n~~g~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      .+.+|||++||.|++.+.+.+.+-. ..+++||+++.+....+.+....        +.....++.+|+.+.-...+   
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~---  124 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPE-DLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFF---  124 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTT-SEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTS---
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCC-CCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhc---
Confidence            4678999999999999999888732 24789999999887776654322        11222345677765211111   


Q ss_pred             hhccCCccEEEEcCCCCCc
Q 006634          575 IHKLGSIDFVICQNSVPQI  593 (637)
Q Consensus       575 ~~~~g~~DLVIGGpPCQ~F  593 (637)
                        ..+.+|.|+--.|...+
T Consensus       125 --~~~~~d~v~~~~p~p~~  141 (246)
T 2vdv_E          125 --EKGQLSKMFFCFPDPHF  141 (246)
T ss_dssp             --CTTCEEEEEEESCCCC-
T ss_pred             --cccccCEEEEECCCccc
Confidence              13578888877776443

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.89  E-value=0.013  Score=53.27  Aligned_cols=77  Identities=10%  Similarity=0.023  Sum_probs=54.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+.||.|.+...+.+.|.   .++++|+++.+....+.+....+...  ..+...|+.+...         .+.
T Consensus        52 ~~~~vLdiG~G~G~~~~~~~~~~~---~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~---------~~~  119 (194)
T 1dus_A           52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK---------DRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT---------TSC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCC---eEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc---------cCC
Confidence            457899999999999999888864   47899999999888877665432222  2345566654321         247


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      +|+|+..+|..
T Consensus       120 ~D~v~~~~~~~  130 (194)
T 1dus_A          120 YNKIITNPPIR  130 (194)
T ss_dssp             EEEEEECCCST
T ss_pred             ceEEEECCCcc
Confidence            99999876643

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.86  E-value=0.0093  Score=50.00  Aligned_cols=42  Identities=12%  Similarity=0.139  Sum_probs=36.5

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ..+.+..|+.|||+++.+.+|+..+|-.+ ++.=+++|+.++.
T Consensus         9 ~e~~v~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~ewL~~~~~   50 (74)
T 2dag_A            9 DESVIIQLVEMGFPMDACRKAVYYTGNSG-AEAAMNWVMSHMD   50 (74)
T ss_dssp             CHHHHHHHHHHSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCCC
Confidence            45688999999999999999999999744 5889999998854

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.86  E-value=0.015  Score=53.97  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=58.5

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      ..+.+.+.+|||+-||.|.+...+.+.|..  .++++|+++.+....+.....  .....+...|+.++..        .
T Consensus        37 ~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~--~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~--------~  104 (215)
T 2pxx_A           37 EPELRPEDRILVLGCGNSALSYELFLGGFP--NVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF--------P  104 (215)
T ss_dssp             GGGCCTTCCEEEETCTTCSHHHHHHHTTCC--CEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS--------C
T ss_pred             HHhcCCCCeEEEECCCCcHHHHHHHHcCCC--cEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC--------C
Confidence            344456789999999999999999999863  578999999998888765432  1223345677776531        1


Q ss_pred             cCCccEEEEcCCC
Q 006634          578 LGSIDFVICQNSV  590 (637)
Q Consensus       578 ~g~~DLVIGGpPC  590 (637)
                      .+.||+|+..++.
T Consensus       105 ~~~fD~v~~~~~~  117 (215)
T 2pxx_A          105 SASFDVVLEKGTL  117 (215)
T ss_dssp             SSCEEEEEEESHH
T ss_pred             CCcccEEEECcch
Confidence            2579999976654

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=95.86  E-value=0.023  Score=53.23  Aligned_cols=80  Identities=18%  Similarity=0.085  Sum_probs=58.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+...|.+.|.   .++++|+++......+.+....+.....+..+|+.+...        ..+.||
T Consensus        77 ~~~~vLdiG~G~G~~~~~la~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D  145 (210)
T 3lbf_A           77 PQSRVLEIGTGSGYQTAILAHLVQ---HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQ--------ARAPFD  145 (210)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCc--------cCCCcc
Confidence            467999999999999999988864   478999999998888877654432223355677765332        135799


Q ss_pred             EEEEcCCCCCc
Q 006634          583 FVICQNSVPQI  593 (637)
Q Consensus       583 LVIGGpPCQ~F  593 (637)
                      +|+...++..+
T Consensus       146 ~i~~~~~~~~~  156 (210)
T 3lbf_A          146 AIIVTAAPPEI  156 (210)
T ss_dssp             EEEESSBCSSC
T ss_pred             EEEEccchhhh
Confidence            99987666544

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=95.83  E-value=0.017  Score=62.18  Aligned_cols=87  Identities=14%  Similarity=0.119  Sum_probs=61.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.||.+..+...--.--.++++|+++...+..+.+....+.....+..+|+.++... +     ..+.||
T Consensus       259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~-~-----~~~~fD  332 (450)
T 2yxl_A          259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEI-I-----GEEVAD  332 (450)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSS-S-----CSSCEE
T ss_pred             CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchh-h-----ccCCCC
Confidence            4578999999999999888764211024789999999988888776544322333456777665421 1     114699


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      +|+--+||.++..
T Consensus       333 ~Vl~D~Pcsg~g~  345 (450)
T 2yxl_A          333 KVLLDAPCTSSGT  345 (450)
T ss_dssp             EEEEECCCCCGGG
T ss_pred             EEEEcCCCCCCee
Confidence            9999999998875

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.81  E-value=0.0079  Score=49.11  Aligned_cols=39  Identities=23%  Similarity=0.247  Sum_probs=34.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           80 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        80 ~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      .+..|+.|||+++.|.+|+..+|..+ ++.=+++|++++.
T Consensus        12 ~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~wL~~h~~   50 (64)
T 2crn_A           12 LLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHCN   50 (64)
T ss_dssp             SHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHSS
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHhCCC
Confidence            56899999999999999999999855 5899999998853

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=95.81  E-value=0.016  Score=61.52  Aligned_cols=77  Identities=18%  Similarity=0.280  Sum_probs=59.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+||||.||.|.+.+.+.+.|.   -|++||+++.+....+.+....+ ....++..|+.+....        .+.||
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~---~V~gvDis~~al~~A~~n~~~~~-~~v~~~~~D~~~~~~~--------~~~fD  300 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGA---EVVGVEDDLASVLSLQKGLEANA-LKAQALHSDVDEALTE--------EARFD  300 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTC---EEEEEESBHHHHHHHHHHHHHTT-CCCEEEECSTTTTSCT--------TCCEE
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHHcC-CCeEEEEcchhhcccc--------CCCeE
Confidence            467899999999999999999986   46899999999998888765432 2233566777665421        25799


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+..+|..
T Consensus       301 ~Ii~npp~~  309 (381)
T 3dmg_A          301 IIVTNPPFH  309 (381)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCchh
Confidence            999988865

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=95.76  E-value=0.0094  Score=61.45  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=66.2

Q ss_pred             hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634          480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  557 (637)
Q Consensus       480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l  557 (637)
                      .+|-.|-+|  .+..++..+..  ..+-+|||+-||.|.++..|.+.|-   -|++||+|+.....++..+..  .....
T Consensus        27 ~~GQnfL~d~~i~~~Iv~~l~~--~~~~~VLEIG~G~G~lT~~La~~~~---~V~aVEid~~li~~a~~~~~~--~~~v~   99 (295)
T 3gru_A           27 KLGQCFLIDKNFVNKAVESANL--TKDDVVLEIGLGKGILTEELAKNAK---KVYVIEIDKSLEPYANKLKEL--YNNIE   99 (295)
T ss_dssp             ---CCEECCHHHHHHHHHHTTC--CTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCGGGHHHHHHHHHH--CSSEE
T ss_pred             ccCccccCCHHHHHHHHHhcCC--CCcCEEEEECCCchHHHHHHHhcCC---EEEEEECCHHHHHHHHHHhcc--CCCeE
Confidence            346655333  44555554432  2457899999999999999988874   478999999999988876642  12233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634          558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                      ++.+|+.++.-..        ..+|+|++..|-+
T Consensus       100 vi~gD~l~~~~~~--------~~fD~Iv~NlPy~  125 (295)
T 3gru_A          100 IIWGDALKVDLNK--------LDFNKVVANLPYQ  125 (295)
T ss_dssp             EEESCTTTSCGGG--------SCCSEEEEECCGG
T ss_pred             EEECchhhCCccc--------CCccEEEEeCccc
Confidence            6788998775322        2589999888743

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.75  E-value=0.027  Score=53.60  Aligned_cols=97  Identities=18%  Similarity=0.107  Sum_probs=62.5

Q ss_pred             hhccccccCCCCCcccccCCCCChHHHHHHHcCC----ceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccccccc
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGI----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDI  563 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi----~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI  563 (637)
                      .+..|......+.+|||+-||.|.+...+.+.+-    +-..++++|+++...+..+.+....+     .....+..+|+
T Consensus        70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  149 (227)
T 2pbf_A           70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI  149 (227)
T ss_dssp             HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred             HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence            3444443344568999999999999998887652    11247899999998888777654432     12223456777


Q ss_pred             cccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634          564 QALTTKKFESLIHKLGSIDFVICQNSVPQI  593 (637)
Q Consensus       564 ~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  593 (637)
                      .+......    ...+.||+|+...++..+
T Consensus       150 ~~~~~~~~----~~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          150 YQVNEEEK----KELGLFDAIHVGASASEL  175 (227)
T ss_dssp             GGCCHHHH----HHHCCEEEEEECSBBSSC
T ss_pred             HhcccccC----ccCCCcCEEEECCchHHH
Confidence            65431110    113579999988877654

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=95.73  E-value=0.017  Score=61.69  Aligned_cols=79  Identities=11%  Similarity=0.096  Sum_probs=55.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeecCHHHHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  545 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~-------------------------------------k~vvaVEid~~a~~t~r  545 (637)
                      .+.+|||+|||.|++.+.+...+..+                                     ..++++|+|+.+.+..+
T Consensus       201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar  280 (393)
T 3k0b_A          201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK  280 (393)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence            46789999999999876555433221                                     13789999999999988


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634          546 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       546 ~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      .+....+... ..+..+|+.++..         .+.+|+|+.-||-
T Consensus       281 ~Na~~~gl~~~I~~~~~D~~~~~~---------~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          281 QNAVEAGLGDLITFRQLQVADFQT---------EDEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHTTCTTCSEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHhCCC---------CCCCCEEEECCCC
Confidence            8766543222 2356678877653         1379999999883

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=95.73  E-value=0.0092  Score=61.54  Aligned_cols=80  Identities=13%  Similarity=-0.022  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCce----eeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKL----KGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~----k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|||+.||.|++.+.+.+..-..    ..++++|+++.+.++.+.+....+. ...+..+|.-...         ..
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~---------~~  199 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL---------LV  199 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC---------CC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc---------cc
Confidence            45899999999999998876543111    3578999999999888776543322 2234455543211         12


Q ss_pred             CCccEEEEcCCCCC
Q 006634          579 GSIDFVICQNSVPQ  592 (637)
Q Consensus       579 g~~DLVIGGpPCQ~  592 (637)
                      +.||+|++-||..-
T Consensus       200 ~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          200 DPVDVVISDLPVGY  213 (344)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             CCccEEEECCCCCC
Confidence            57999999999743

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.70  E-value=0.0099  Score=59.81  Aligned_cols=99  Identities=13%  Similarity=0.107  Sum_probs=64.4

Q ss_pred             Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634          479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  556 (637)
Q Consensus       479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~  556 (637)
                      |.+|-.|-+|  .+..++..+..  ..+-+|||+-||.|.++..|.+.|-   .|++||+|+.....++..+..  ....
T Consensus         5 k~~GQnFL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~---~V~avEid~~~~~~~~~~~~~--~~~v   77 (255)
T 3tqs_A            5 KRFGQHFLHDSFVLQKIVSAIHP--QKTDTLVEIGPGRGALTDYLLTECD---NLALVEIDRDLVAFLQKKYNQ--QKNI   77 (255)
T ss_dssp             ----CCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTTTTHHHHTTTSS---EEEEEECCHHHHHHHHHHHTT--CTTE
T ss_pred             CcCCcccccCHHHHHHHHHhcCC--CCcCEEEEEcccccHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHhh--CCCc
Confidence            4456666443  34444444432  2467899999999999999998883   478999999999988876643  1223


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634          557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  589 (637)
                      .++.+|+.+++-..+.    ..+.+| |+|-+|
T Consensus        78 ~~i~~D~~~~~~~~~~----~~~~~~-vv~NlP  105 (255)
T 3tqs_A           78 TIYQNDALQFDFSSVK----TDKPLR-VVGNLP  105 (255)
T ss_dssp             EEEESCTTTCCGGGSC----CSSCEE-EEEECC
T ss_pred             EEEEcchHhCCHHHhc----cCCCeE-EEecCC
Confidence            3678899888643321    013567 777776

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=95.68  E-value=0.011  Score=54.96  Aligned_cols=82  Identities=12%  Similarity=0.076  Sum_probs=56.2

Q ss_pred             CCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhcc
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+.+|||+.||.|++...+.+. |-. ..++++|+++.+.+..+.+....+. ....++.+|+.++..     .  ..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~--~~   91 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGEN-GRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDK-----Y--ID   91 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTT-CEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGG-----T--CC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhh-----h--cc
Confidence            345679999999999999888765 211 1478999999998888877654321 122345677655432     1  12


Q ss_pred             CCccEEEEcCCC
Q 006634          579 GSIDFVICQNSV  590 (637)
Q Consensus       579 g~~DLVIGGpPC  590 (637)
                      +.||+|+..+|-
T Consensus        92 ~~fD~v~~~~~~  103 (197)
T 3eey_A           92 CPVKAVMFNLGY  103 (197)
T ss_dssp             SCEEEEEEEESB
T ss_pred             CCceEEEEcCCc
Confidence            579999988766

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=95.62  E-value=0.013  Score=57.91  Aligned_cols=75  Identities=13%  Similarity=0.177  Sum_probs=53.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+-||.|.+...+.++|.   .++++|+++.+....+.+....+.. ..+..+|+.+.    +     ..+.+
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~---~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~----~-----~~~~f  185 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGG---KALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA----L-----PFGPF  185 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH----G-----GGCCE
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCC---eEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhc----C-----cCCCC
Confidence            4567999999999999999999986   4789999999998888766543221 22344554431    1     12579


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+...+
T Consensus       186 D~Vv~n~~  193 (254)
T 2nxc_A          186 DLLVANLY  193 (254)
T ss_dssp             EEEEEECC
T ss_pred             CEEEECCc
Confidence            99997544

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=95.62  E-value=0.011  Score=60.15  Aligned_cols=95  Identities=16%  Similarity=0.182  Sum_probs=65.4

Q ss_pred             hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634          480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  557 (637)
Q Consensus       480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l  557 (637)
                      .+|..|-+|  .+..++..+. .. .+ +|||+-||.|.++..|.+.|.   -|+++|+|+.....++.....   ....
T Consensus        24 ~~GQnfL~d~~i~~~Iv~~~~-~~-~~-~VLEIG~G~G~lt~~L~~~~~---~V~avEid~~~~~~l~~~~~~---~~v~   94 (271)
T 3fut_A           24 RFGQNFLVSEAHLRRIVEAAR-PF-TG-PVFEVGPGLGALTRALLEAGA---EVTAIEKDLRLRPVLEETLSG---LPVR   94 (271)
T ss_dssp             TSSCCEECCHHHHHHHHHHHC-CC-CS-CEEEECCTTSHHHHHHHHTTC---CEEEEESCGGGHHHHHHHTTT---SSEE
T ss_pred             cCCccccCCHHHHHHHHHhcC-CC-CC-eEEEEeCchHHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcCC---CCEE
Confidence            345555333  3333343332 22 35 999999999999999999984   478999999999988876532   1233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634          558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      ++.+|+.+++-..+       ..+|+|+|-.|=
T Consensus        95 vi~~D~l~~~~~~~-------~~~~~iv~NlPy  120 (271)
T 3fut_A           95 LVFQDALLYPWEEV-------PQGSLLVANLPY  120 (271)
T ss_dssp             EEESCGGGSCGGGS-------CTTEEEEEEECS
T ss_pred             EEECChhhCChhhc-------cCccEEEecCcc
Confidence            67889988764322       257899998874

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=95.59  E-value=0.013  Score=62.18  Aligned_cols=78  Identities=15%  Similarity=0.250  Sum_probs=54.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeecCHHHHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  545 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~-------------------------------------k~vvaVEid~~a~~t~r  545 (637)
                      .+.+|||+|||.|++.+.+...|..+                                     ..++++|+|+.+.++.+
T Consensus       195 ~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar  274 (385)
T 3ldu_A          195 AGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIAR  274 (385)
T ss_dssp             TTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHH
Confidence            46789999999999877665543211                                     24789999999999888


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634          546 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       546 ~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  589 (637)
                      .+....+... ..+..+|+.++..         .+.+|+|+.-||
T Consensus       275 ~Na~~~gl~~~i~~~~~D~~~l~~---------~~~~D~Iv~NPP  310 (385)
T 3ldu_A          275 ENAEIAGVDEYIEFNVGDATQFKS---------EDEFGFIITNPP  310 (385)
T ss_dssp             HHHHHHTCGGGEEEEECCGGGCCC---------SCBSCEEEECCC
T ss_pred             HHHHHcCCCCceEEEECChhhcCc---------CCCCcEEEECCC
Confidence            7765443221 2245677776543         236899999888

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=95.58  E-value=0.024  Score=51.14  Aligned_cols=75  Identities=12%  Similarity=0.056  Sum_probs=53.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+...+.+.+   ..++++|+++.+....+.+....+.....+..+|+.+    .+.     .+.+|
T Consensus        35 ~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~-----~~~~D  102 (183)
T 2yxd_A           35 KDDVVVDVGCGSGGMTVEIAKRC---KFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED----VLD-----KLEFN  102 (183)
T ss_dssp             TTCEEEEESCCCSHHHHHHHTTS---SEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH----HGG-----GCCCS
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcC---CeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc----ccc-----CCCCc
Confidence            45689999999999999998844   3578999999998888876654322222244556543    111     15799


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +|+..+|
T Consensus       103 ~i~~~~~  109 (183)
T 2yxd_A          103 KAFIGGT  109 (183)
T ss_dssp             EEEECSC
T ss_pred             EEEECCc
Confidence            9998887

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=95.57  E-value=0.0077  Score=49.10  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=34.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ..+..|+.|||+++.+.+|+..+|-.+ ++.=+++|+.++
T Consensus        21 ~~i~~L~~MGF~~~~a~~AL~~t~~~n-ve~A~ewL~~~~   59 (64)
T 2cpw_A           21 SALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSHS   59 (64)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCCC-HHHHHHHHHhCC
Confidence            468999999999999999999999744 588899999764

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=95.57  E-value=0.015  Score=42.18  Aligned_cols=36  Identities=31%  Similarity=0.291  Sum_probs=29.6

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFI  114 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I  114 (637)
                      ..+.+..|+.|||+++.+.+|+..|+-+  ++.=+++|
T Consensus         4 ~~~~i~~L~~mGf~~~~a~~AL~~~~~n--~e~A~~~L   39 (40)
T 1z96_A            4 LNSKIAQLVSMGFDPLEAAQALDAANGD--LDVAASFL   39 (40)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHH
Confidence            4568899999999999999999999763  46666665

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.56  E-value=0.026  Score=53.70  Aligned_cols=92  Identities=17%  Similarity=0.117  Sum_probs=61.0

Q ss_pred             hhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCcccccccccc
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQAL  566 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI~~L  566 (637)
                      .+..|......+.+|||+-||.|++...+.+. |-. ..++++|+++...+..+.+....+     .....+...|+...
T Consensus        67 ~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           67 ALELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCC-cEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            34444433455789999999999999888765 422 247899999998887776654321     11122345666533


Q ss_pred             ChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634          567 TTKKFESLIHKLGSIDFVICQNSVPQI  593 (637)
Q Consensus       567 t~~~Ie~l~~~~g~~DLVIGGpPCQ~F  593 (637)
                      ..        ..+.||+|+...||..+
T Consensus       146 ~~--------~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A          146 YA--------EEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             CG--------GGCCEEEEEECSBBSSC
T ss_pred             cc--------cCCCcCEEEECCchHHH
Confidence            21        13579999999999766

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=95.54  E-value=0.03  Score=52.47  Aligned_cols=80  Identities=11%  Similarity=0.009  Sum_probs=56.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+...+.+.|-. ..++++|+++.+.+..+.+....+.....+..+|+.+.-.        ..+.+|
T Consensus        40 ~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~~D  110 (204)
T 3e05_A           40 DDLVMWDIGAGSASVSIEASNLMPN-GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD--------DLPDPD  110 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHCTT-SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT--------TSCCCS
T ss_pred             CCCEEEEECCCCCHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh--------cCCCCC
Confidence            4678999999999999999988722 3478999999999888876654332222244566643221        225799


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+.+.+..
T Consensus       111 ~i~~~~~~~  119 (204)
T 3e05_A          111 RVFIGGSGG  119 (204)
T ss_dssp             EEEESCCTT
T ss_pred             EEEECCCCc
Confidence            999887654

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.54  E-value=0.027  Score=55.62  Aligned_cols=76  Identities=21%  Similarity=0.217  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+...|.+.|.+   |+++|+++.+....+......+. ...+...|+.++..         .+.||
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g~~---v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~fD  186 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLGYD---VTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI---------QENYD  186 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC---------CSCEE
T ss_pred             CCCcEEEECCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc---------cCCcc
Confidence            4678999999999999999999873   68999999998888776544322 23345677766542         24689


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+...+..
T Consensus       187 ~i~~~~~~~  195 (286)
T 3m70_A          187 FIVSTVVFM  195 (286)
T ss_dssp             EEEECSSGG
T ss_pred             EEEEccchh
Confidence            888766544

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=95.51  E-value=0.01  Score=54.89  Aligned_cols=69  Identities=14%  Similarity=0.083  Sum_probs=50.9

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+|||+.||.|.+...+.+.|    .++++|+++.+.+.       .+  ...+..+|+.+.-.         .+.||+
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~-------~~--~~~~~~~d~~~~~~---------~~~fD~   81 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES-------HR--GGNLVRADLLCSIN---------QESVDV   81 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT-------CS--SSCEEECSTTTTBC---------GGGCSE
T ss_pred             CCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc-------cc--CCeEEECChhhhcc---------cCCCCE
Confidence            4589999999999999999988    47899999998654       11  22356778765221         146999


Q ss_pred             EEEcCCCCCcC
Q 006634          584 VICQNSVPQIP  594 (637)
Q Consensus       584 VIGGpPCQ~FS  594 (637)
                      |+..+|-...+
T Consensus        82 i~~n~~~~~~~   92 (170)
T 3q87_B           82 VVFNPPYVPDT   92 (170)
T ss_dssp             EEECCCCBTTC
T ss_pred             EEECCCCccCC
Confidence            99988765544

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=95.45  E-value=0.017  Score=45.28  Aligned_cols=42  Identities=19%  Similarity=0.129  Sum_probs=36.3

Q ss_pred             chhhHHHHHHHhcCC-CHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           75 GLHIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        75 s~~~~~~~~lv~MGF-~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ....+++..|+.||| +++.+.+|+..+|-+  ++.-+++|+..+
T Consensus         9 ~~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~   51 (53)
T 2knz_A            9 VRFQQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred             hHHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence            345678999999999 999999999999974  688899999865

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.44  E-value=0.021  Score=51.86  Aligned_cols=76  Identities=16%  Similarity=0.163  Sum_probs=55.6

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+.+|||+-||.|.+...+.+.|.   .++++|+++.+....+....     ...+...|+.++..        ..+.
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~~~~~~~~a~~~~~-----~~~~~~~d~~~~~~--------~~~~  107 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQGH---DVLGTDLDPILIDYAKQDFP-----EARWVVGDLSVDQI--------SETD  107 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHTTC---EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTSCC--------CCCC
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHCCC---cEEEEcCCHHHHHHHHHhCC-----CCcEEEcccccCCC--------CCCc
Confidence            45678999999999999999999986   36899999998887765432     22345677766531        1257


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      +|+|+..+++-.
T Consensus       108 ~D~i~~~~~~~~  119 (195)
T 3cgg_A          108 FDLIVSAGNVMG  119 (195)
T ss_dssp             EEEEEECCCCGG
T ss_pred             eeEEEECCcHHh
Confidence            999997655543

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=95.43  E-value=0.015  Score=48.53  Aligned_cols=41  Identities=17%  Similarity=0.255  Sum_probs=35.8

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ...+++..|+.|||+++.|.+|+..+|- + ++.=+++|+..+
T Consensus        28 ~~~~~v~~L~~MGF~~~~a~~AL~~t~~-n-ve~Ave~L~~~~   68 (73)
T 1wiv_A           28 IDQSSVDTLLSFGFAEDVARKALKASGG-D-IEKATDWVFNNS   68 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTS-C-HHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHhCC-C-HHHHHHHHHhCC
Confidence            3567899999999999999999999996 3 688899999864

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=95.40  E-value=0.023  Score=60.68  Aligned_cols=85  Identities=12%  Similarity=0.117  Sum_probs=61.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.||.+..+...+-. -.++++|+++...+..+.+....+. ...+..+|..++... +     ..+.||
T Consensus       246 ~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~-~-----~~~~fD  317 (429)
T 1sqg_A          246 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQW-C-----GEQQFD  317 (429)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHH-H-----TTCCEE
T ss_pred             CcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhh-c-----ccCCCC
Confidence            3578999999999999998887532 3578999999988888877654332 223456777655311 1     124799


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      +|+.-+||.++..
T Consensus       318 ~Vl~D~Pcsg~g~  330 (429)
T 1sqg_A          318 RILLDAPCSATGV  330 (429)
T ss_dssp             EEEEECCCCCGGG
T ss_pred             EEEEeCCCCcccc
Confidence            9999999998875

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.38  E-value=0.024  Score=60.39  Aligned_cols=79  Identities=10%  Similarity=0.088  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCce-------------------------------------eeEEEeecCHHHHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKL-------------------------------------KGVISIETSETNRRILK  545 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~-------------------------------------k~vvaVEid~~a~~t~r  545 (637)
                      .+-+++|.|||.|++.+.+...+.++                                     ..++++|+|+.+.+..+
T Consensus       194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar  273 (384)
T 3ldg_A          194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR  273 (384)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred             CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence            46789999999999876554433221                                     13789999999999988


Q ss_pred             HHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634          546 RWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       546 ~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      .+....+... ..+..+|+.++..         .+.+|+|+.-||-
T Consensus       274 ~Na~~~gl~~~I~~~~~D~~~l~~---------~~~fD~Iv~NPPY  310 (384)
T 3ldg_A          274 KNAREVGLEDVVKLKQMRLQDFKT---------NKINGVLISNPPY  310 (384)
T ss_dssp             HHHHHTTCTTTEEEEECCGGGCCC---------CCCSCEEEECCCC
T ss_pred             HHHHHcCCCCceEEEECChHHCCc---------cCCcCEEEECCch
Confidence            8776543222 2356678877653         1379999998884

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=95.38  E-value=0.024  Score=60.46  Aligned_cols=41  Identities=15%  Similarity=0.185  Sum_probs=34.8

Q ss_pred             chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      +...+.+..|+.|||+++.|.+|+..++-+ . +.=+|+|++.
T Consensus       166 ~~~~~~i~~l~~MGf~~~~~~~AL~a~~nn-~-~~A~e~L~~g  206 (368)
T 1oqy_A          166 SEYETMLTEIMSMGYERERVVAALRASYNN-P-HRAVEYLLTG  206 (368)
T ss_dssp             TTHHHHHHHHHTTTCCSHHHHHHHHHSCSS-T-THHHHTTTTS
T ss_pred             cchHHHHHHHHHcCCCHHHHHHHHHHcCCC-H-HHHHHHHHhC
Confidence            457788999999999999999999999974 3 6778888743

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.32  E-value=0.021  Score=54.42  Aligned_cols=81  Identities=16%  Similarity=0.133  Sum_probs=56.5

Q ss_pred             hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHH
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFE  572 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie  572 (637)
                      .+..+..+.+.+.+|||+-||.|.+...+.+.|..   ++++|+++.+....+...   ......++..|+.++..    
T Consensus        43 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~----  112 (242)
T 3l8d_A           43 IIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYK---AVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF----  112 (242)
T ss_dssp             HHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS----
T ss_pred             HHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCCe---EEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC----
Confidence            34445555667789999999999999999999873   689999999887776532   11223345677766541    


Q ss_pred             HhhhccCCccEEEEc
Q 006634          573 SLIHKLGSIDFVICQ  587 (637)
Q Consensus       573 ~l~~~~g~~DLVIGG  587 (637)
                          ..+.||+|+..
T Consensus       113 ----~~~~fD~v~~~  123 (242)
T 3l8d_A          113 ----ENEQFEAIMAI  123 (242)
T ss_dssp             ----CTTCEEEEEEE
T ss_pred             ----CCCCccEEEEc
Confidence                12467888754

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=95.29  E-value=0.032  Score=55.05  Aligned_cols=96  Identities=15%  Similarity=0.055  Sum_probs=60.8

Q ss_pred             hhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc
Q 006634          480 SLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL  557 (637)
Q Consensus       480 ~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l  557 (637)
                      .+|..|-++  .+...+..+.  ...+-+|||+.||.|.++..|.+.|.   .|+++|+|+.....++.....  .....
T Consensus         7 ~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~--~~~v~   79 (244)
T 1qam_A            7 KHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQ   79 (244)
T ss_dssp             ---CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEE
T ss_pred             cCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcCC---eEEEEECCHHHHHHHHHhhcc--CCCeE
Confidence            345555332  3334444432  13467899999999999999998883   478999999999888876532  12233


Q ss_pred             cccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634          558 VQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       558 ~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      ++.+|+.++....       ...+ .|++.+|=
T Consensus        80 ~~~~D~~~~~~~~-------~~~~-~vv~nlPy  104 (244)
T 1qam_A           80 VLNKDILQFKFPK-------NQSY-KIFGNIPY  104 (244)
T ss_dssp             EECCCGGGCCCCS-------SCCC-EEEEECCG
T ss_pred             EEEChHHhCCccc-------CCCe-EEEEeCCc
Confidence            5678887765310       1234 57777774

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.27  E-value=0.035  Score=52.63  Aligned_cols=82  Identities=20%  Similarity=0.083  Sum_probs=56.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+||||.||.|.+.+.+.+..-. ..+++||+++.+....+.+....+.....++.+|+.++.. .+     ..+.+|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~-~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~-~~-----~~~~~D  113 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPD-INYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTD-YF-----EDGEID  113 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGG-TS-----CTTCCS
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCC-CCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHh-hc-----CCCCCC
Confidence            3578999999999999988876321 2478999999998888776544332223356678776431 01     124699


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+..+|..
T Consensus       114 ~i~~~~~~~  122 (214)
T 1yzh_A          114 RLYLNFSDP  122 (214)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            999887753

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.22  E-value=0.042  Score=50.43  Aligned_cols=74  Identities=16%  Similarity=0.119  Sum_probs=53.7

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +.+|||+-||.|.+...+.+.|.   .++++|+++.+....+......+.....+...|+.++..         .+.+|+
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~---------~~~~D~  100 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAANGY---DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF---------DRQYDF  100 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC---------CCCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC---------CCCceE
Confidence            45999999999999999999886   378999999998888776544322223345667766531         246888


Q ss_pred             EEEcCC
Q 006634          584 VICQNS  589 (637)
Q Consensus       584 VIGGpP  589 (637)
                      |+....
T Consensus       101 v~~~~~  106 (199)
T 2xvm_A          101 ILSTVV  106 (199)
T ss_dssp             EEEESC
T ss_pred             EEEcch
Confidence            886654

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=95.19  E-value=0.047  Score=52.09  Aligned_cols=75  Identities=16%  Similarity=0.103  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.|.+.+.+.+.|.   .|+++|+++.+.+..+.+....+.. ...++.+|+.+.-        ...+.|
T Consensus        55 ~~~~vLDlGcG~G~~~~~la~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~--------~~~~~~  123 (204)
T 3njr_A           55 RGELLWDIGGGSGSVSVEWCLAGG---RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL--------ADLPLP  123 (204)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG--------TTSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc--------ccCCCC
Confidence            457899999999999999988865   4789999999998888765443322 2234566765421        122479


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+-+.
T Consensus       124 D~v~~~~  130 (204)
T 3njr_A          124 EAVFIGG  130 (204)
T ss_dssp             SEEEECS
T ss_pred             CEEEECC
Confidence            9998554

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.18  E-value=0.032  Score=52.50  Aligned_cols=85  Identities=19%  Similarity=0.275  Sum_probs=58.3

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-----CCccccccccccChhh
Q 006634          496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKK  570 (637)
Q Consensus       496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-----g~l~~~~DI~~Lt~~~  570 (637)
                      .++.+.+.+.+|||+-||.|.+...+.+.|..   ++++|+++.+....+.+....+..     ...+...|+..+..  
T Consensus        23 ~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~--   97 (235)
T 3sm3_A           23 IIHNYLQEDDEILDIGCGSGKISLELASKGYS---VTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF--   97 (235)
T ss_dssp             THHHHCCTTCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS--
T ss_pred             HHHHhCCCCCeEEEECCCCCHHHHHHHhCCCe---EEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC--
Confidence            34455567889999999999999999999863   689999999988887655432110     01234566665431  


Q ss_pred             HHHhhhccCCccEEEEcCCCC
Q 006634          571 FESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       571 Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                            ..+.||+|+......
T Consensus        98 ------~~~~~D~v~~~~~l~  112 (235)
T 3sm3_A           98 ------HDSSFDFAVMQAFLT  112 (235)
T ss_dssp             ------CTTCEEEEEEESCGG
T ss_pred             ------CCCceeEEEEcchhh
Confidence                  125789999765433

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=95.08  E-value=0.0074  Score=63.04  Aligned_cols=96  Identities=11%  Similarity=0.078  Sum_probs=59.3

Q ss_pred             Hhhhhhhcccchhhh-hccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634          479 ESLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE  556 (637)
Q Consensus       479 k~Lgnsfqvdtv~~~-lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~  556 (637)
                      +.+|..|..+.+... +..+..  +.+.+|||+.||.|++.+.+.+. +-. ..++++|+++.+.+..         ...
T Consensus        16 ~~~g~~~TP~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~-~~i~gvDi~~~~~~~a---------~~~   83 (421)
T 2ih2_A           16 RSLGRVETPPEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTA-YRFVGVEIDPKALDLP---------PWA   83 (421)
T ss_dssp             -----CCCCHHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSC-SEEEEEESCTTTCCCC---------TTE
T ss_pred             ccCceEeCCHHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCC-CeEEEEECCHHHHHhC---------CCC
Confidence            455666655544443 333332  23559999999999999988763 211 3578999999875322         112


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEEcCCCCCcCc
Q 006634          557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIPN  595 (637)
Q Consensus       557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS~  595 (637)
                      .++.+|+.+...         .+.||+|++-||.-....
T Consensus        84 ~~~~~D~~~~~~---------~~~fD~Ii~NPPy~~~~~  113 (421)
T 2ih2_A           84 EGILADFLLWEP---------GEAFDLILGNPPYGIVGE  113 (421)
T ss_dssp             EEEESCGGGCCC---------SSCEEEEEECCCCCCBSC
T ss_pred             cEEeCChhhcCc---------cCCCCEEEECcCccCccc
Confidence            245677765432         247999999999977653

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.06  E-value=0.027  Score=48.28  Aligned_cols=41  Identities=17%  Similarity=0.113  Sum_probs=35.5

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ..+.+..|+.|||+++.+.+|+..++-  .++.=+++|+.++.
T Consensus        29 ~e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~~   69 (83)
T 2dai_A           29 DEAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHAE   69 (83)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGGG
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCCC
Confidence            567889999999999999999999954  36889999998753

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=95.04  E-value=0.041  Score=57.59  Aligned_cols=80  Identities=13%  Similarity=0.111  Sum_probs=58.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc-cChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA-LTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~-Lt~~~Ie~l~~~~g~~D  582 (637)
                      +-+|||+. |.|.+.+.+.+.|.. ..|+++|+++.+.+..+.+....+.....++.+|+.+ +...       ..+.||
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~-~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~-------~~~~fD  243 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLP-KRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDY-------ALHKFD  243 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCC-SEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTT-------TSSCBS
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhh-------ccCCcc
Confidence            57899999 999999999888752 3578999999999888877654332223356788876 4310       124799


Q ss_pred             EEEEcCCCCC
Q 006634          583 FVICQNSVPQ  592 (637)
Q Consensus       583 LVIGGpPCQ~  592 (637)
                      +|+-.|||..
T Consensus       244 ~Vi~~~p~~~  253 (373)
T 2qm3_A          244 TFITDPPETL  253 (373)
T ss_dssp             EEEECCCSSH
T ss_pred             EEEECCCCch
Confidence            9999999853

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=95.02  E-value=0.036  Score=51.48  Aligned_cols=73  Identities=16%  Similarity=0.224  Sum_probs=52.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+ +|||+-||.|.+...|.+.|.   .++++|+++.+....+......+. ...+...|+.++..        ..+.+
T Consensus        29 ~~~-~vLdiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------~~~~f   95 (202)
T 2kw5_A           29 PQG-KILCLAEGEGRNACFLASLGY---EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI--------VADAW   95 (202)
T ss_dssp             CSS-EEEECCCSCTHHHHHHHTTTC---EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC--------CTTTC
T ss_pred             CCC-CEEEECCCCCHhHHHHHhCCC---eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC--------CcCCc
Confidence            345 999999999999999999987   378999999988877766543321 22345567765531        12468


Q ss_pred             cEEEEc
Q 006634          582 DFVICQ  587 (637)
Q Consensus       582 DLVIGG  587 (637)
                      |+|+..
T Consensus        96 D~v~~~  101 (202)
T 2kw5_A           96 EGIVSI  101 (202)
T ss_dssp             SEEEEE
T ss_pred             cEEEEE
Confidence            998864

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=94.94  E-value=0.042  Score=56.69  Aligned_cols=84  Identities=13%  Similarity=0.102  Sum_probs=56.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.||.+..+.+.+=. ..|+++|+|+.+....+.+....+ ....++.+|..++.. .+..+  ..+.||
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~~-~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~-~l~~~--g~~~~D  100 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCPG-CRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADF-LLKTL--GIEKVD  100 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHH-HHHHT--TCSCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHH-HHHhc--CCCCCC
Confidence            3568999999999999998775201 247899999999988877654332 222345677765531 11110  124799


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      .|+--+||.
T Consensus       101 ~Vl~D~gvS  109 (301)
T 1m6y_A          101 GILMDLGVS  109 (301)
T ss_dssp             EEEEECSCC
T ss_pred             EEEEcCccc
Confidence            999988885

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=94.92  E-value=0.031  Score=43.68  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=33.9

Q ss_pred             hhhHHHHHHHhcCC-CHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           76 LHIEKRASLLMMNF-SVNEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        76 ~~~~~~~~lv~MGF-~~eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      ....++..|+.||| +++.+.+|+..+|-+  ++.-+++|++.
T Consensus        11 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~~   51 (52)
T 2jy5_A           11 RFQQQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLGS   51 (52)
T ss_dssp             TTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            34578999999999 999999999999874  58889988753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=94.91  E-value=0.035  Score=53.57  Aligned_cols=73  Identities=19%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+||||-||.|.+...|.+.|..  .++++|+++.+....+....   .....+..+|+.++..        ..+.||
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~--------~~~~fD  110 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGAK--KVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI--------EPDAYN  110 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCCC--EEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC--------CCCCeE
Confidence            4689999999999999999999863  57899999998887766432   1222345677766541        124688


Q ss_pred             EEEEcC
Q 006634          583 FVICQN  588 (637)
Q Consensus       583 LVIGGp  588 (637)
                      +|+...
T Consensus       111 ~v~~~~  116 (253)
T 3g5l_A          111 VVLSSL  116 (253)
T ss_dssp             EEEEES
T ss_pred             EEEEch
Confidence            888654

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=94.89  E-value=0.054  Score=48.98  Aligned_cols=80  Identities=16%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.|.+...+.+.+   ..++++|+++.+.+..+.+....+. ....+...|+.+        .....+.+
T Consensus        33 ~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~--------~~~~~~~~  101 (192)
T 1l3i_A           33 KNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE--------ALCKIPDI  101 (192)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH--------HHTTSCCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH--------hcccCCCC
Confidence            45789999999999999999888   3578999999998888776543321 111233444432        11122479


Q ss_pred             cEEEEcCCCCCc
Q 006634          582 DFVICQNSVPQI  593 (637)
Q Consensus       582 DLVIGGpPCQ~F  593 (637)
                      |+|+...+...+
T Consensus       102 D~v~~~~~~~~~  113 (192)
T 1l3i_A          102 DIAVVGGSGGEL  113 (192)
T ss_dssp             EEEEESCCTTCH
T ss_pred             CEEEECCchHHH
Confidence            999988765443

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=94.83  E-value=0.059  Score=50.47  Aligned_cols=70  Identities=20%  Similarity=0.236  Sum_probs=51.3

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+.+|||+-||.|.+...|.+.|..   ++++|+++......+...      +..+...|+.++..         .+.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~---------~~~  102 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGFD---VDATDGSPELAAEASRRL------GRPVRTMLFHQLDA---------IDA  102 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHH------TSCCEECCGGGCCC---------CSC
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCCe---EEEECCCHHHHHHHHHhc------CCceEEeeeccCCC---------CCc
Confidence            345679999999999999999999873   689999999888776543      12244567766541         246


Q ss_pred             ccEEEEcC
Q 006634          581 IDFVICQN  588 (637)
Q Consensus       581 ~DLVIGGp  588 (637)
                      ||+|+...
T Consensus       103 fD~v~~~~  110 (211)
T 3e23_A          103 YDAVWAHA  110 (211)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEecC
Confidence            88888643

>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.75  E-value=0.018  Score=46.97  Aligned_cols=40  Identities=25%  Similarity=0.393  Sum_probs=34.4

Q ss_pred             hhhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          149 TMEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       149 ~~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      +.+.+..|+.|||++++|..|+..+|.+  |+.-+|-||+-.
T Consensus        19 e~e~V~~LvsMGFs~~qA~kALKat~~N--vErAaDWLFSH~   58 (63)
T 1wgn_A           19 ERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            3466779999999999999999999987  888888888643

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=94.74  E-value=0.065  Score=52.28  Aligned_cols=82  Identities=15%  Similarity=0.152  Sum_probs=58.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+.+|||+-||.|.+...+.+.+.  ..++++|+++......+......+... ..+..+|+.++..        ..+.
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~  114 (267)
T 3kkz_A           45 TEKSLIADIGCGTGGQTMVLAGHVT--GQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF--------RNEE  114 (267)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHTTCS--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--------CTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccC--CEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC--------CCCC
Confidence            4578999999999999999988853  257899999998888877654432222 3356778876641        1257


Q ss_pred             ccEEEEcCCCCCc
Q 006634          581 IDFVICQNSVPQI  593 (637)
Q Consensus       581 ~DLVIGGpPCQ~F  593 (637)
                      ||+|+...+...+
T Consensus       115 fD~i~~~~~~~~~  127 (267)
T 3kkz_A          115 LDLIWSEGAIYNI  127 (267)
T ss_dssp             EEEEEESSCGGGT
T ss_pred             EEEEEEcCCceec
Confidence            9999977665443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=94.74  E-value=0.075  Score=50.49  Aligned_cols=79  Identities=16%  Similarity=0.127  Sum_probs=56.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...+.+.|.   .++++|+++......+......+  ...+..+|+.+.-.        ..+.||
T Consensus        70 ~~~~vLdiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~--------~~~~fD  136 (231)
T 1vbf_A           70 KGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYE--------EEKPYD  136 (231)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHcC---EEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccc--------cCCCcc
Confidence            457899999999999999999883   57899999999888877654321  22245567654211        125789


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+...++..+.
T Consensus       137 ~v~~~~~~~~~~  148 (231)
T 1vbf_A          137 RVVVWATAPTLL  148 (231)
T ss_dssp             EEEESSBBSSCC
T ss_pred             EEEECCcHHHHH
Confidence            999887776553

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=94.73  E-value=0.093  Score=50.44  Aligned_cols=81  Identities=10%  Similarity=0.078  Sum_probs=57.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+.+|||+-||.|.+...+.+.+-.  .++++|+++......+......+... ..++.+|+.++..        ..+.
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  114 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVKG--QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF--------QNEE  114 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCS--EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS--------CTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC--------CCCC
Confidence            34679999999999999999888742  57899999999888877655433222 2356678766542        1257


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      ||+|+.......
T Consensus       115 fD~v~~~~~l~~  126 (257)
T 3f4k_A          115 LDLIWSEGAIYN  126 (257)
T ss_dssp             EEEEEEESCSCC
T ss_pred             EEEEEecChHhh
Confidence            999987654443

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.71  E-value=0.055  Score=52.35  Aligned_cols=79  Identities=20%  Similarity=0.214  Sum_probs=56.0

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+.||.|++...+.+. |=. ..++++|+++...+..+.+....+... ..+..+|+.+.-         ..+.
T Consensus        93 ~~~~vldiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  162 (255)
T 3mb5_A           93 PGDFIVEAGVGSGALTLFLANIVGPE-GRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI---------EEEN  162 (255)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC---------CCCS
T ss_pred             CCCEEEEecCCchHHHHHHHHHhCCC-eEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc---------CCCC
Confidence            4678999999999999999887 411 357899999998888877665433222 234566766431         1246


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      +|+|+..+|+.
T Consensus       163 ~D~v~~~~~~~  173 (255)
T 3mb5_A          163 VDHVILDLPQP  173 (255)
T ss_dssp             EEEEEECSSCG
T ss_pred             cCEEEECCCCH
Confidence            99999987765

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=94.70  E-value=0.033  Score=56.37  Aligned_cols=42  Identities=17%  Similarity=0.268  Sum_probs=34.9

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .+|||+|||.|..++-|-+.|..   |++||+++....+++.+..
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~---V~~vE~~~~~~~l~~~~l~  131 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCR---VRMLERNPVVAALLDDGLA  131 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCC---EEEEECCHHHHHHHHHHHH
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCE---EEEEECCHHHHHHHHHHHH
Confidence            78999999999999988888863   7899999987666665443

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=94.70  E-value=0.028  Score=54.70  Aligned_cols=78  Identities=18%  Similarity=0.152  Sum_probs=56.0

Q ss_pred             hccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHH
Q 006634          494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFES  573 (637)
Q Consensus       494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~  573 (637)
                      +..|....+.+.+|||+-||.|.+...|.+.|.   .++++|+++......+....     ...++.+|+.++..     
T Consensus        41 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-----  107 (263)
T 3pfg_A           41 AALVRRHSPKAASLLDVACGTGMHLRHLADSFG---TVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-----  107 (263)
T ss_dssp             HHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS---EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-----
T ss_pred             HHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC---eEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-----
Confidence            334445556678999999999999999999986   36899999998887765422     22355677776542     


Q ss_pred             hhhccCCccEEEEcC
Q 006634          574 LIHKLGSIDFVICQN  588 (637)
Q Consensus       574 l~~~~g~~DLVIGGp  588 (637)
                          .+.||+|+...
T Consensus       108 ----~~~fD~v~~~~  118 (263)
T 3pfg_A          108 ----GRRFSAVTCMF  118 (263)
T ss_dssp             ----SCCEEEEEECT
T ss_pred             ----cCCcCEEEEcC
Confidence                24688888543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=94.66  E-value=0.051  Score=51.46  Aligned_cols=74  Identities=16%  Similarity=0.112  Sum_probs=53.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+......+. ...+...|+.++..         .+.|
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~---------~~~f  102 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI---------NRKF  102 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC---------SCCE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc---------cCCc
Confidence            45679999999999999999998863   78999999988887766543321 22345677766532         1478


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+...
T Consensus       103 D~v~~~~  109 (246)
T 1y8c_A          103 DLITCCL  109 (246)
T ss_dssp             EEEEECT
T ss_pred             eEEEEcC
Confidence            9998643

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=94.63  E-value=0.039  Score=52.42  Aligned_cols=77  Identities=21%  Similarity=0.206  Sum_probs=52.9

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh-hHHHhhh--c
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK-KFESLIH--K  577 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~-~Ie~l~~--~  577 (637)
                      ++.+.+||||-||.||++..+.+.+-   .|++||+++..           ...+..++.+||.+.... .+.....  .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~---~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLAR---KIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCS---EEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCC---cEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            34578999999999999999888753   47899999752           122444678999876532 2222221  0


Q ss_pred             cCCccEEEEcCCCC
Q 006634          578 LGSIDFVICQNSVP  591 (637)
Q Consensus       578 ~g~~DLVIGGpPCQ  591 (637)
                      .+.||+|+.-.|++
T Consensus        89 ~~~~D~Vlsd~~~~  102 (191)
T 3dou_A           89 IEKVDDVVSDAMAK  102 (191)
T ss_dssp             CSSEEEEEECCCCC
T ss_pred             CCcceEEecCCCcC
Confidence            14899999877655

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=94.50  E-value=0.037  Score=64.65  Aligned_cols=103  Identities=14%  Similarity=0.098  Sum_probs=59.8

Q ss_pred             hhhhcccchhhhhcc-----ccccCCCCCcccccCCCCChHHHHHHHc-C-CceeeEEEeecCHHHHHHH--HHHhhh--
Q 006634          482 RHCFQTDTLGYHLSV-----LKSMFPGGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRIL--KRWWES--  550 (637)
Q Consensus       482 gnsfqvdtv~~~lsv-----LK~~f~~~l~vLsLFSGiGGlslGL~~a-G-i~~k~vvaVEid~~a~~t~--r~~~~~--  550 (637)
                      |..+....++..+.-     +.+..+.+.+|+|.+||.|++-+++.+. + ..-..++++||++.+.++.  +.+...  
T Consensus       295 GqFYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~  374 (878)
T 3s1s_A          295 GVVPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQ  374 (878)
T ss_dssp             BSSSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTT
T ss_pred             ceEcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhh
Confidence            444444444444322     2333456789999999999999887653 2 2123578999999988776  332211  


Q ss_pred             --cCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634          551 --SGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       551 --tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                        ++.....+...|....+.       ...+.||+|||=||=-
T Consensus       375 LlhGi~~~~I~~dD~L~~~~-------~~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          375 LVSSNNAPTITGEDVCSLNP-------EDFANVSVVVMNPPYV  410 (878)
T ss_dssp             TCBTTBCCEEECCCGGGCCG-------GGGTTEEEEEECCBCC
T ss_pred             hhcCCCcceEEecchhcccc-------cccCCCCEEEECCCcc
Confidence              000011222334433221       1235799999999973

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.44  E-value=0.041  Score=47.34  Aligned_cols=41  Identities=12%  Similarity=0.099  Sum_probs=34.3

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      +.+++..|+.|||+++.|.+|+..++-+  ++.=+++|+.+..
T Consensus        21 n~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~~   61 (85)
T 2dkl_A           21 MSRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKKV   61 (85)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCcC
Confidence            4678899999999999999999666543  5899999998743

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=94.44  E-value=0.049  Score=54.75  Aligned_cols=96  Identities=14%  Similarity=0.147  Sum_probs=57.9

Q ss_pred             chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc-------CCCCCccccc
Q 006634          489 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS-------GQTGELVQIE  561 (637)
Q Consensus       489 tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t-------n~~g~l~~~~  561 (637)
                      .+...+..|+...+.+.+|||+-||.|++...+.+.+.  ..++++|+++...+..+......       +.....++..
T Consensus        20 l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   97 (313)
T 3bgv_A           20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRI--NKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA   97 (313)
T ss_dssp             HHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred             HHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCC--CEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence            33444455555445678999999999999998887653  35789999999887776654322       1111234567


Q ss_pred             cccccChhhHHHhhhccCCccEEEEcC
Q 006634          562 DIQALTTKKFESLIHKLGSIDFVICQN  588 (637)
Q Consensus       562 DI~~Lt~~~Ie~l~~~~g~~DLVIGGp  588 (637)
                      |+.++....  .+....+.||+|+...
T Consensus        98 D~~~~~~~~--~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A           98 DSSKELLID--KFRDPQMCFDICSCQF  122 (313)
T ss_dssp             CTTTSCSTT--TCSSTTCCEEEEEEET
T ss_pred             cccccchhh--hcccCCCCEEEEEEec
Confidence            776653100  0000123688888654

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=94.44  E-value=0.012  Score=45.28  Aligned_cols=38  Identities=18%  Similarity=0.077  Sum_probs=31.5

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      .+.|..|+.|||++..|.+|+..||-+  .+.=+++|++.
T Consensus         5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~~   42 (47)
T 1dv0_A            5 KEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLSQ   42 (47)
T ss_dssp             HHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            457889999999999999999999943  36678888753

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.43  E-value=0.075  Score=54.08  Aligned_cols=84  Identities=21%  Similarity=0.212  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|++...+.+.+-+-..|+++|+++...+..+.+....+.....+..+|+.+...        ..+.||
T Consensus        75 ~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~--------~~~~fD  146 (317)
T 1dl5_A           75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP--------EFSPYD  146 (317)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG--------GGCCEE
T ss_pred             CcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccc--------cCCCeE
Confidence            467999999999999988887764212378999999998887776654322223345677765322        125799


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+...++..+.
T Consensus       147 ~Iv~~~~~~~~~  158 (317)
T 1dl5_A          147 VIFVTVGVDEVP  158 (317)
T ss_dssp             EEEECSBBSCCC
T ss_pred             EEEEcCCHHHHH
Confidence            999988877653

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=94.36  E-value=0.078  Score=50.93  Aligned_cols=61  Identities=16%  Similarity=0.185  Sum_probs=45.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  567 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt  567 (637)
                      .+.+|||+-||.|.+...|.+.|..   ++++|+++......+......+. ...+..+|+.++.
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~  101 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIA  101 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCCe---EEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcc
Confidence            4578999999999999999999873   78999999998888776543321 2234566776553

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.36  E-value=0.042  Score=43.60  Aligned_cols=41  Identities=12%  Similarity=0.183  Sum_probs=35.5

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      +++-+..|+.|||+++.|.+|+++-|... ++.-+|+|..-.
T Consensus         9 n~qmlq~L~eMGFd~erae~Alk~Tg~~G-le~AmewL~k~~   49 (54)
T 2cos_A            9 NRQMLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYISKMS   49 (54)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHHHhc
Confidence            44568999999999999999999999976 799999998543

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=94.36  E-value=0.11  Score=49.86  Aligned_cols=87  Identities=16%  Similarity=0.118  Sum_probs=58.9

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634          499 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       499 ~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      ...+.+.+|||+-||.|.+...|.+.|.   .|+++|+++.+....+....   .....++..|+.++....-   ....
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~---~~~~  122 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQ---IHSE  122 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHH---HHHH
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccc---cccc
Confidence            3345678999999999999999999886   47899999998887776432   1223356778877543210   1011


Q ss_pred             CCccEEEEcCCCCCcC
Q 006634          579 GSIDFVICQNSVPQIP  594 (637)
Q Consensus       579 g~~DLVIGGpPCQ~FS  594 (637)
                      ..+|+|+......-+.
T Consensus       123 ~~~d~v~~~~~~~~~~  138 (245)
T 3ggd_A          123 IGDANIYMRTGFHHIP  138 (245)
T ss_dssp             HCSCEEEEESSSTTSC
T ss_pred             cCccEEEEcchhhcCC
Confidence            2489999776554443

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=94.27  E-value=0.065  Score=52.83  Aligned_cols=79  Identities=19%  Similarity=0.178  Sum_probs=55.4

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      -+.+.+|||+-||.|.+...|.+.|..   ++++|+++......+......+. ....++.+|+.++..       ...+
T Consensus        66 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~  135 (285)
T 4htf_A           66 GPQKLRVLDAGGGEGQTAIKMAERGHQ---VILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS-------HLET  135 (285)
T ss_dssp             CSSCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG-------GCSS
T ss_pred             CCCCCEEEEeCCcchHHHHHHHHCCCE---EEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh-------hcCC
Confidence            345689999999999999999999874   68999999988887766543221 112245677766542       0125


Q ss_pred             CccEEEEcCC
Q 006634          580 SIDFVICQNS  589 (637)
Q Consensus       580 ~~DLVIGGpP  589 (637)
                      .||+|+....
T Consensus       136 ~fD~v~~~~~  145 (285)
T 4htf_A          136 PVDLILFHAV  145 (285)
T ss_dssp             CEEEEEEESC
T ss_pred             CceEEEECch
Confidence            7999997543

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=94.27  E-value=0.051  Score=57.39  Aligned_cols=78  Identities=13%  Similarity=0.046  Sum_probs=53.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC---CccccccccccChhhHHHhhhccCC
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG---ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g---~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+||||+||.|.+.+.+.+.+-. ..|++||+++.+.+..+.+....+-..   ..+..+|+.+.-         ..+.
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~-~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~---------~~~~  292 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQ-AKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGV---------EPFR  292 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTC---------CTTC
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCC-CEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccC---------CCCC
Confidence            378999999999999999888411 247899999999988887765432110   112445554311         1247


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      ||+|+..||..
T Consensus       293 fD~Ii~nppfh  303 (375)
T 4dcm_A          293 FNAVLCNPPFH  303 (375)
T ss_dssp             EEEEEECCCC-
T ss_pred             eeEEEECCCcc
Confidence            99999999864

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=94.22  E-value=0.09  Score=49.76  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=57.9

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|||+-||.|+....|.++   |.   .++++|+++......+.++...+... ..++.+|+.+.    +..+....
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~  130 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGG---RVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS----LQQIENEK  130 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTT
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcC
Confidence            3578999999999999999886   54   47899999999888888776543322 22455666532    22222111


Q ss_pred             -CCccEEEEcCCCCCc
Q 006634          579 -GSIDFVICQNSVPQI  593 (637)
Q Consensus       579 -g~~DLVIGGpPCQ~F  593 (637)
                       +.||+|+-..+|..+
T Consensus       131 ~~~fD~v~~d~~~~~~  146 (223)
T 3duw_A          131 YEPFDFIFIDADKQNN  146 (223)
T ss_dssp             CCCCSEEEECSCGGGH
T ss_pred             CCCcCEEEEcCCcHHH
Confidence             569999987776643

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=94.21  E-value=0.083  Score=49.54  Aligned_cols=79  Identities=18%  Similarity=0.112  Sum_probs=55.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+...|+.++..        ..+.|
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~f  107 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL--------PDNTV  107 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS--------CSSCE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC--------CCCCe
Confidence            3467999999999999999988762222578999999998888776654332223355677766531        12468


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+...
T Consensus       108 D~v~~~~  114 (219)
T 3dh0_A          108 DFIFMAF  114 (219)
T ss_dssp             EEEEEES
T ss_pred             eEEEeeh
Confidence            9988654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=94.21  E-value=0.079  Score=53.34  Aligned_cols=85  Identities=15%  Similarity=0.110  Sum_probs=57.4

Q ss_pred             hhhhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccCh
Q 006634          491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTT  568 (637)
Q Consensus       491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~  568 (637)
                      ...+..|... +.+.+|||+.||.|++...|.+. |.   .|+++|+++......+.+....+.. ...++.+|+.++.-
T Consensus       106 ~~l~~~l~~~-~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~  181 (312)
T 3vc1_A          106 EFLMDHLGQA-GPDDTLVDAGCGRGGSMVMAHRRFGS---RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF  181 (312)
T ss_dssp             HHHHTTSCCC-CTTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC
T ss_pred             HHHHHHhccC-CCCCEEEEecCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC
Confidence            3444444422 35679999999999999998877 75   3789999999888777765543222 12356678776541


Q ss_pred             hhHHHhhhccCCccEEEEc
Q 006634          569 KKFESLIHKLGSIDFVICQ  587 (637)
Q Consensus       569 ~~Ie~l~~~~g~~DLVIGG  587 (637)
                              ..+.||+|+..
T Consensus       182 --------~~~~fD~V~~~  192 (312)
T 3vc1_A          182 --------DKGAVTASWNN  192 (312)
T ss_dssp             --------CTTCEEEEEEE
T ss_pred             --------CCCCEeEEEEC
Confidence                    12468888853

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=94.19  E-value=0.067  Score=49.76  Aligned_cols=81  Identities=20%  Similarity=0.076  Sum_probs=53.0

Q ss_pred             hhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006634          490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  569 (637)
Q Consensus       490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~  569 (637)
                      +...+..|... +.+.+|||+-||.|.+...+.+.|.+   ++++|+++......+.    .+.....+..+|+.++.  
T Consensus        34 ~~~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~---v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~--  103 (218)
T 3ou2_A           34 APAALERLRAG-NIRGDVLELASGTGYWTRHLSGLADR---VTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT--  103 (218)
T ss_dssp             HHHHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHHSSE---EEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC--
T ss_pred             HHHHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC--
Confidence            33444444443 34569999999999999999998863   6899999998777654    11122334566766541  


Q ss_pred             hHHHhhhccCCccEEEEc
Q 006634          570 KFESLIHKLGSIDFVICQ  587 (637)
Q Consensus       570 ~Ie~l~~~~g~~DLVIGG  587 (637)
                             ..+.||+|+..
T Consensus       104 -------~~~~~D~v~~~  114 (218)
T 3ou2_A          104 -------PDRQWDAVFFA  114 (218)
T ss_dssp             -------CSSCEEEEEEE
T ss_pred             -------CCCceeEEEEe
Confidence                   12457777753

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=94.19  E-value=0.038  Score=55.54  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=49.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCH-------HHHHHHHHHhhhcCCCC-CccccccccccChhhHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSE-------TNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~-------~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      .+.+|||++||.|.+++.|.+.|.   -|+++|+++       .+.+..+.+....+... ..++.+|+.++.    ..+
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~---~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l----~~~  155 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGL---TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQM----PAL  155 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTC---CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHH----HHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCC---EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHH----Hhh
Confidence            357899999999999999998885   378999999       66555544322111001 123445554321    111


Q ss_pred             hhccCCccEEEEcCCC
Q 006634          575 IHKLGSIDFVICQNSV  590 (637)
Q Consensus       575 ~~~~g~~DLVIGGpPC  590 (637)
                      ....+.||+|+--||=
T Consensus       156 ~~~~~~fD~V~~dP~~  171 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMY  171 (258)
T ss_dssp             HHHHCCCSEEEECCCC
T ss_pred             hccCCCccEEEECCCC
Confidence            1001479999987653

>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.18  E-value=0.028  Score=42.76  Aligned_cols=35  Identities=17%  Similarity=0.374  Sum_probs=29.9

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  188 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A  188 (637)
                      +++..|+.|||++++|..|+..||   .++.-++.|+.
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~~~---n~e~A~~~L~~   45 (47)
T 2ekk_A           11 QQLQQLMDMGFTREHAMEALLNTS---TMEQATEYLLT   45 (47)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHSC---SHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcC---CHHHHHHHHHc
Confidence            567799999999999999999997   57777777764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=94.14  E-value=0.033  Score=54.17  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=35.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWW  548 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~  548 (637)
                      .+.+|||++||.|.+.+.+.+.. ..-..++++|+++.+.+..+.+.
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~   97 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL   97 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence            45799999999999999887650 11235789999999988777543

>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=94.13  E-value=0.042  Score=42.35  Aligned_cols=37  Identities=11%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  188 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A  188 (637)
                      .+++..|+.|||++++|..|+.+||-+  ++.-++.++.
T Consensus         9 ~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~e~L~~   45 (49)
T 1ify_A            9 ETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLT   45 (49)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHTTTSC--SHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence            367789999999999999999999975  6666777765

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=93.98  E-value=0.033  Score=61.81  Aligned_cols=76  Identities=14%  Similarity=0.199  Sum_probs=51.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+++|||+=||.|-++..|.++|..   |++||.++.+..+-+..-...   |.+  .-+.+..+.+++... ...+.||
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~---V~giD~~~~~i~~a~~~a~~~---~~~--~~~~~~~~~~~~~~~-~~~~~fD  136 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGAT---IVGIDFQQENINVCRALAEEN---PDF--AAEFRVGRIEEVIAA-LEEGEFD  136 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHTS---TTS--EEEEEECCHHHHHHH-CCTTSCS
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCE---EEEECCCHHHHHHHHHHHHhc---CCC--ceEEEECCHHHHhhh-ccCCCcc
Confidence            4689999999999999999999984   789999999998877654332   211  012222333332110 1235799


Q ss_pred             EEEEc
Q 006634          583 FVICQ  587 (637)
Q Consensus       583 LVIGG  587 (637)
                      +|++-
T Consensus       137 ~v~~~  141 (569)
T 4azs_A          137 LAIGL  141 (569)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99863

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=93.98  E-value=0.059  Score=51.46  Aligned_cols=77  Identities=17%  Similarity=0.022  Sum_probs=52.9

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      .+|||+-||.|.+...|.+.|.   .++++|+++.+....+......+.. ...+..+|+.++...         +.||+
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~fD~  135 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPER---FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT---------ELFDL  135 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTE---EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCS---------SCEEE
T ss_pred             CCEEEeCCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCC---------CCeeE
Confidence            4999999999999999988775   3789999999988887655321111 122456777665421         36888


Q ss_pred             EEEcCCCCCc
Q 006634          584 VICQNSVPQI  593 (637)
Q Consensus       584 VIGGpPCQ~F  593 (637)
                      |+.......+
T Consensus       136 v~~~~~l~~~  145 (235)
T 3lcc_A          136 IFDYVFFCAI  145 (235)
T ss_dssp             EEEESSTTTS
T ss_pred             EEEChhhhcC
Confidence            8865544433

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=93.95  E-value=0.15  Score=48.40  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.|.++..|.+. |-. ..++++|+++.+.+..+.+....  ....++.+|+.+...  +.   ...+.|
T Consensus        73 ~~~~vLDlG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~--~~---~~~~~~  144 (227)
T 1g8a_A           73 PGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE--YR---ALVPKV  144 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG--GT---TTCCCE
T ss_pred             CCCEEEEEeccCCHHHHHHHHHhCCC-eEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcch--hh---cccCCc
Confidence            4678999999999999988765 421 24789999998766655543221  233355677765321  00   112469


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+..+|
T Consensus       145 D~v~~~~~  152 (227)
T 1g8a_A          145 DVIFEDVA  152 (227)
T ss_dssp             EEEEECCC
T ss_pred             eEEEECCC
Confidence            99997766

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=93.95  E-value=0.089  Score=52.01  Aligned_cols=79  Identities=18%  Similarity=0.185  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+.||.|.+.+.+.+. |-. ..++++|+++.+.+..+.+....+. ....+..+|+.+.-         ..+.
T Consensus       112 ~~~~VLDiG~G~G~~~~~la~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---------~~~~  181 (277)
T 1o54_A          112 EGDRIIDTGVGSGAMCAVLARAVGSS-GKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKD  181 (277)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTT-CEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCS
T ss_pred             CCCEEEEECCcCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc---------cCCc
Confidence            4678999999999999998877 421 2478999999998888876644321 11123456665431         1146


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      ||+|+-.+|+.
T Consensus       182 ~D~V~~~~~~~  192 (277)
T 1o54_A          182 VDALFLDVPDP  192 (277)
T ss_dssp             EEEEEECCSCG
T ss_pred             cCEEEECCcCH
Confidence            99999988865

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=93.93  E-value=0.052  Score=55.12  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=38.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      .+-+|||+|||.|...+++.++|.+   +++||+++.+..+.+..+..
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~g~~---~~g~e~~~~~~~~a~~r~~~  279 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARWGRR---ALGVELVPRYAQLAKERFAR  279 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHHH
Confidence            4567999999999999999999963   68999999998887766543

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=93.92  E-value=0.12  Score=51.35  Aligned_cols=53  Identities=23%  Similarity=0.118  Sum_probs=43.4

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  551 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t  551 (637)
                      .++.+.+-+|+|+-||.|-+.+.+.+.|-. ..|+++|+++.+....+.+-...
T Consensus        10 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~~-~~V~avDi~~~al~~A~~N~~~~   62 (225)
T 3kr9_A           10 ASFVSQGAILLDVGSDHAYLPIELVERGQI-KSAIAGEVVEGPYQSAVKNVEAH   62 (225)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTSE-EEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEeCCCcHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHc
Confidence            344566789999999999999999998843 46889999999999888776544

>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=93.91  E-value=0.053  Score=40.35  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=28.4

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhh
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIF  187 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~  187 (637)
                      +++..|+.|||++++|..|+..|+-+  ++.-++.++
T Consensus         6 ~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~L~   40 (43)
T 2g3q_A            6 LAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLL   40 (43)
T ss_dssp             HHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCcC--HHHHHHHHH
Confidence            56779999999999999999999764  555555554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=93.87  E-value=0.11  Score=49.32  Aligned_cols=75  Identities=20%  Similarity=0.126  Sum_probs=53.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc------------CCCCCccccccccccChh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS------------GQTGELVQIEDIQALTTK  569 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t------------n~~g~l~~~~DI~~Lt~~  569 (637)
                      +.+.+|||+=||.|....-|.+.|++   |++||+++.+.+..+......            ......++.+|+.++...
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~~---V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~   97 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   97 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCCe---EEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcc
Confidence            45689999999999999999999973   789999999988776542110            012233567888887643


Q ss_pred             hHHHhhhccCCccEEEE
Q 006634          570 KFESLIHKLGSIDFVIC  586 (637)
Q Consensus       570 ~Ie~l~~~~g~~DLVIG  586 (637)
                      ..       +.||+|+.
T Consensus        98 ~~-------~~fD~v~~  107 (203)
T 1pjz_A           98 DI-------GHCAAFYD  107 (203)
T ss_dssp             HH-------HSEEEEEE
T ss_pred             cC-------CCEEEEEE
Confidence            21       36899885

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=93.85  E-value=0.11  Score=49.99  Aligned_cols=77  Identities=16%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+.+|||+-||.|.+...|.+.|.   .++++|+++......+... ........+..+|+.++..        ..+.
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~--------~~~~  104 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGY---RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL--------PDES  104 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTC---EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS--------CTTC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCC---EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC--------CCCC
Confidence            34568999999999999999998875   4789999999888777654 1112223345677765531        1246


Q ss_pred             ccEEEEcCC
Q 006634          581 IDFVICQNS  589 (637)
Q Consensus       581 ~DLVIGGpP  589 (637)
                      ||+|+....
T Consensus       105 fD~v~~~~~  113 (263)
T 2yqz_A          105 VHGVIVVHL  113 (263)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEEECCc
Confidence            899987543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.84  E-value=0.13  Score=49.18  Aligned_cols=76  Identities=12%  Similarity=0.030  Sum_probs=53.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.|.+...+.+.+.   .++++|+++...+..+.+....+. ....+..+|+.+...        ..+.+
T Consensus        91 ~~~~vldiG~G~G~~~~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~  159 (248)
T 2yvl_A           91 KEKRVLEFGTGSGALLAVLSEVAG---EVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--------PEGIF  159 (248)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--------CTTCB
T ss_pred             CCCEEEEeCCCccHHHHHHHHhCC---EEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--------CCCcc
Confidence            467899999999999998888754   478999999998888776543321 112234566654320        11469


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+..+|
T Consensus       160 D~v~~~~~  167 (248)
T 2yvl_A          160 HAAFVDVR  167 (248)
T ss_dssp             SEEEECSS
T ss_pred             cEEEECCc
Confidence            99998766

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=93.83  E-value=0.071  Score=57.13  Aligned_cols=83  Identities=14%  Similarity=0.102  Sum_probs=55.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcC------------CceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLG------------IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  568 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aG------------i~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~  568 (637)
                      .+.+|+|..||.||+-+.+.+.-            +....++++|+++.+.++.+.+...++..  ...+..+|.-....
T Consensus       171 ~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i~~gD~l~~~~  250 (445)
T 2okc_A          171 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEKEP  250 (445)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTSCC
T ss_pred             CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCEeeCCCCCCcc
Confidence            35799999999999988775420            01135789999999988777654333221  12345566543321


Q ss_pred             hhHHHhhhccCCccEEEEcCCCCCcC
Q 006634          569 KKFESLIHKLGSIDFVICQNSVPQIP  594 (637)
Q Consensus       569 ~~Ie~l~~~~g~~DLVIGGpPCQ~FS  594 (637)
                               .+.||+|++-||.....
T Consensus       251 ---------~~~fD~Iv~NPPf~~~~  267 (445)
T 2okc_A          251 ---------STLVDVILANPPFGTRP  267 (445)
T ss_dssp             ---------SSCEEEEEECCCSSCCC
T ss_pred             ---------cCCcCEEEECCCCCCcc
Confidence                     23799999999987654

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=93.82  E-value=0.17  Score=50.67  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=37.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeec-CHHHHHHHHHHh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIET-SETNRRILKRWW  548 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEi-d~~a~~t~r~~~  548 (637)
                      .+.+||||.||.|.+++.+.+.|.  ..|+++|+ ++.+....+.+.
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~~--~~v~~~D~s~~~~~~~a~~n~  123 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAGA--DQVVATDYPDPEILNSLESNI  123 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTTC--SEEEEEECSCHHHHHHHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcCC--CEEEEEeCCCHHHHHHHHHHH
Confidence            456899999999999999999985  35889999 899988888765

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=93.82  E-value=0.13  Score=50.12  Aligned_cols=82  Identities=21%  Similarity=0.226  Sum_probs=57.0

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ++.+.+|||+-||.|.+...+.+.+-. ..++++|+++......+......+.....+...|+.++..        ..+.
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  105 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF--------EDSS  105 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS--------CTTC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC--------CCCC
Confidence            356789999999999999999888421 2478999999988877776544322223345677766542        1257


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      ||+|+......
T Consensus       106 fD~v~~~~~l~  116 (276)
T 3mgg_A          106 FDHIFVCFVLE  116 (276)
T ss_dssp             EEEEEEESCGG
T ss_pred             eeEEEEechhh
Confidence            99999765443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=93.79  E-value=0.092  Score=48.90  Aligned_cols=73  Identities=14%  Similarity=0.095  Sum_probs=51.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +.+|||+.||.|.+...+.+.. +-..++++|+++.+....+.+....+.....+..+|+.++..         .+.||+
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~D~  135 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS---------EPPFDG  135 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC---------CSCEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc---------cCCcCE
Confidence            5689999999999998888752 112478999999998888776554332223345677765432         246899


Q ss_pred             EEE
Q 006634          584 VIC  586 (637)
Q Consensus       584 VIG  586 (637)
                      |+.
T Consensus       136 i~~  138 (207)
T 1jsx_A          136 VIS  138 (207)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            984

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=93.73  E-value=0.1  Score=50.20  Aligned_cols=77  Identities=13%  Similarity=0.218  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...+.+.|.   .++++|+++......+......+.....+..+|+.++..        ..+.||
T Consensus        21 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD   89 (239)
T 1xxl_A           21 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSFD   89 (239)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCEE
T ss_pred             CCCEEEEEccCcCHHHHHHHHhCC---EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC--------CCCcEE
Confidence            467899999999999999988874   478999999988877766543322223345677765531        124689


Q ss_pred             EEEEcCCC
Q 006634          583 FVICQNSV  590 (637)
Q Consensus       583 LVIGGpPC  590 (637)
                      +|+.....
T Consensus        90 ~v~~~~~l   97 (239)
T 1xxl_A           90 IITCRYAA   97 (239)
T ss_dssp             EEEEESCG
T ss_pred             EEEECCch
Confidence            99876543

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=93.69  E-value=0.14  Score=56.75  Aligned_cols=106  Identities=13%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             hhhhhhcccchhhh-hccccccCCCCCcccccCCCCChHHHHHHHc----CC-------------ceeeEEEeecCHHHH
Q 006634          480 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL----GI-------------KLKGVISIETSETNR  541 (637)
Q Consensus       480 ~Lgnsfqvdtv~~~-lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a----Gi-------------~~k~vvaVEid~~a~  541 (637)
                      ..|-.|....+... ...+.+  ..+.+|+|..||.|||-+.+.+.    +-             ....++++|+++.+.
T Consensus       147 ~~G~fyTP~~iv~~mv~~l~p--~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~  224 (541)
T 2ar0_A          147 GAGQYFTPRPLIKTIIHLLKP--QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  224 (541)
T ss_dssp             ---CCCCCHHHHHHHHHHHCC--CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             cCCeeeCCHHHHHHHHHHhcc--CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHH
Confidence            34555655444333 333332  24689999999999998776532    10             113589999999998


Q ss_pred             HHHHHHhhhcCCCC-----CccccccccccChhhHHHhhhccCCccEEEEcCCCCCcC
Q 006634          542 RILKRWWESSGQTG-----ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVPQIP  594 (637)
Q Consensus       542 ~t~r~~~~~tn~~g-----~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~FS  594 (637)
                      ++.+.+..-++...     ..+.++|.-...       ....+.||+|++-||.....
T Consensus       225 ~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~-------~~~~~~fD~Vv~NPPf~~~~  275 (541)
T 2ar0_A          225 RLALMNCLLHDIEGNLDHGGAIRLGNTLGSD-------GENLPKAHIVATNPPFGSAA  275 (541)
T ss_dssp             HHHHHHHHTTTCCCBGGGTBSEEESCTTSHH-------HHTSCCEEEEEECCCCTTCS
T ss_pred             HHHHHHHHHhCCCccccccCCeEeCCCcccc-------cccccCCeEEEECCCccccc
Confidence            88776543332221     223444432111       11235799999999987665

>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.67  E-value=0.051  Score=43.85  Aligned_cols=38  Identities=26%  Similarity=0.389  Sum_probs=33.4

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      +++..|+.|||++++|..|+.+|+-+  ++.-++.|+...
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~t~~n--ve~A~e~L~~~~   48 (63)
T 2dak_A           11 DCVTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHI   48 (63)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTSC--SHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            56779999999999999999999874  888889998765

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=93.63  E-value=0.03  Score=55.95  Aligned_cols=98  Identities=19%  Similarity=0.080  Sum_probs=62.4

Q ss_pred             Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC
Q 006634          479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE  556 (637)
Q Consensus       479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~  556 (637)
                      |.+|-.|-+|  .+..++..+..  ..+-+|||+.||.|.++..|.+.|.  .-+++||+|+.....++..    .....
T Consensus         7 k~~GQnfl~d~~i~~~iv~~~~~--~~~~~VLDiG~G~G~lt~~L~~~~~--~~v~avEid~~~~~~~~~~----~~~~v   78 (249)
T 3ftd_A            7 KSFGQHLLVSEGVLKKIAEELNI--EEGNTVVEVGGGTGNLTKVLLQHPL--KKLYVIELDREMVENLKSI----GDERL   78 (249)
T ss_dssp             -CCCSSCEECHHHHHHHHHHTTC--CTTCEEEEEESCHHHHHHHHTTSCC--SEEEEECCCHHHHHHHTTS----CCTTE
T ss_pred             CcccccccCCHHHHHHHHHhcCC--CCcCEEEEEcCchHHHHHHHHHcCC--CeEEEEECCHHHHHHHHhc----cCCCe
Confidence            3445555333  33333433321  2356899999999999999998862  3478999999998877643    11222


Q ss_pred             ccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634          557 LVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       557 l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                      .++.+|+.+++-..+      .+ ..+|+|-+|=+
T Consensus        79 ~~i~~D~~~~~~~~~------~~-~~~vv~NlPy~  106 (249)
T 3ftd_A           79 EVINEDASKFPFCSL------GK-ELKVVGNLPYN  106 (249)
T ss_dssp             EEECSCTTTCCGGGS------CS-SEEEEEECCTT
T ss_pred             EEEEcchhhCChhHc------cC-CcEEEEECchh
Confidence            366789988764332      12 34788887753

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=93.62  E-value=0.12  Score=51.15  Aligned_cols=76  Identities=17%  Similarity=0.075  Sum_probs=52.9

Q ss_pred             CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~t-n~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      ..+.+|||+.||.|++...+.+.   +.   .++++|+++...+..+.+.... +.....+..+|+.+.-         .
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---------~  176 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKG---TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI---------S  176 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSS---EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC---------C
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCC---EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccC---------c
Confidence            34679999999999999998876   44   4789999999988887766433 2112224556665421         1


Q ss_pred             cCCccEEEEcCC
Q 006634          578 LGSIDFVICQNS  589 (637)
Q Consensus       578 ~g~~DLVIGGpP  589 (637)
                      .+.||+|+...|
T Consensus       177 ~~~fD~Vi~~~~  188 (275)
T 1yb2_A          177 DQMYDAVIADIP  188 (275)
T ss_dssp             SCCEEEEEECCS
T ss_pred             CCCccEEEEcCc
Confidence            146999998655

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=93.60  E-value=0.067  Score=51.81  Aligned_cols=81  Identities=12%  Similarity=0.046  Sum_probs=52.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+-||.|.+.+.|..+.-. ..|++||+++.+....+.+....+.....++.+|+.++...     ....+.|
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~~~~f  142 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPH-LHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQR-----KDVRESY  142 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTC-----TTTTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhccc-----ccccCCc
Confidence            35679999999999888887743211 24789999999888888766544322233456666554310     0012579


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+...
T Consensus       143 D~V~~~~  149 (240)
T 1xdz_A          143 DIVTARA  149 (240)
T ss_dssp             EEEEEEC
T ss_pred             cEEEEec
Confidence            9999644

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=93.56  E-value=0.08  Score=49.93  Aligned_cols=68  Identities=13%  Similarity=0.069  Sum_probs=48.0

Q ss_pred             hhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccccccccc
Q 006634          491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQAL  566 (637)
Q Consensus       491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~L  566 (637)
                      .+.+..+.... .+.+|||+=||.|.+...|.+.|.   .++++|+++......+..+..    ...++.+|+.++
T Consensus        31 ~~~~~~l~~~~-~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~   98 (250)
T 2p7i_A           31 PFMVRAFTPFF-RPGNLLELGSFKGDFTSRLQEHFN---DITCVEASEEAISHAQGRLKD----GITYIHSRFEDA   98 (250)
T ss_dssp             HHHHHHHGGGC-CSSCEEEESCTTSHHHHHHTTTCS---CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC
T ss_pred             HHHHHHHHhhc-CCCcEEEECCCCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc
Confidence            34445555444 456899999999999999998886   368999999988877765431    222455666554

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=93.54  E-value=0.15  Score=48.95  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc-CCCCCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-GQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t-n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+.||.|.+...+.++ |-. ..++++|+++...+..+.+.... +.....+...|+.+..   +     ..+.
T Consensus        96 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~---~-----~~~~  166 (258)
T 2pwy_A           96 PGMRVLEAGTGSGGLTLFLARAVGEK-GLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE---L-----EEAA  166 (258)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC---C-----CTTC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC---C-----CCCC
Confidence            4678999999999999998887 411 24789999999988888766443 2122234567776542   1     1146


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      +|+|+..+|+.
T Consensus       167 ~D~v~~~~~~~  177 (258)
T 2pwy_A          167 YDGVALDLMEP  177 (258)
T ss_dssp             EEEEEEESSCG
T ss_pred             cCEEEECCcCH
Confidence            99999877654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=93.53  E-value=0.19  Score=47.22  Aligned_cols=78  Identities=8%  Similarity=0.026  Sum_probs=52.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-----CCccccccccccChhhHHHhhhc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-----GELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-----g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      .+.+|||+-||.|.+...|.+.|-. ..++++|+++.+.+..+......+..     ...+..+|+..+..        .
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~--------~   99 (217)
T 3jwh_A           29 NARRVIDLGCGQGNLLKILLKDSFF-EQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK--------R   99 (217)
T ss_dssp             TCCEEEEETCTTCHHHHHHHHCTTC-SEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG--------G
T ss_pred             CCCEEEEeCCCCCHHHHHHHhhCCC-CEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc--------c
Confidence            3569999999999999999987732 35789999999988887765432211     12244566643331        1


Q ss_pred             cCCccEEEEcCC
Q 006634          578 LGSIDFVICQNS  589 (637)
Q Consensus       578 ~g~~DLVIGGpP  589 (637)
                      .+.||+|+....
T Consensus       100 ~~~fD~v~~~~~  111 (217)
T 3jwh_A          100 FHGYDAATVIEV  111 (217)
T ss_dssp             GCSCSEEEEESC
T ss_pred             CCCcCEEeeHHH
Confidence            246888885543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=93.53  E-value=0.052  Score=54.63  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=54.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC-----------CCCCccccccccccChhh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----------QTGELVQIEDIQALTTKK  570 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn-----------~~g~l~~~~DI~~Lt~~~  570 (637)
                      +.+.+||+|.||.|++...+.+.|.  ..+++||+|+...+..+.++ ..+           .+...++.+|..+.    
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~--~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~----  146 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDV--DEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEF----  146 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCC--SEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHH----
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCC--CEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHH----
Confidence            3567899999999999998887753  46889999999999888876 221           11122344555321    


Q ss_pred             HHHhhhccCCccEEEEcCCC
Q 006634          571 FESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       571 Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      +.   . .+.+|+|+.-+|+
T Consensus       147 l~---~-~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          147 IK---N-NRGFDVIIADSTD  162 (281)
T ss_dssp             HH---H-CCCEEEEEEECCC
T ss_pred             hc---c-cCCeeEEEECCCC
Confidence            11   1 3579999988876

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=93.50  E-value=0.13  Score=47.79  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=51.5

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +.+|||+-||.|.+...|.+.|..   ++++|+++......+...     ....++.+|+.++..        ..+.||+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~~fD~  105 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQ---IEGLEPATRLVELARQTH-----PSVTFHHGTITDLSD--------SPKRWAG  105 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCC---EEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGG--------SCCCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCe---EEEEeCCHHHHHHHHHhC-----CCCeEEeCccccccc--------CCCCeEE
Confidence            678999999999999999999874   689999999887776532     223356677766431        1257999


Q ss_pred             EEEcC
Q 006634          584 VICQN  588 (637)
Q Consensus       584 VIGGp  588 (637)
                      |+...
T Consensus       106 v~~~~  110 (203)
T 3h2b_A          106 LLAWY  110 (203)
T ss_dssp             EEEES
T ss_pred             EEehh
Confidence            98754

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=93.48  E-value=0.14  Score=46.15  Aligned_cols=82  Identities=13%  Similarity=0.136  Sum_probs=52.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+...+.+.. +-..++++|+++......+.+....+....+...+|..+    .++   ...+.||
T Consensus        25 ~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~----~~~---~~~~~~D   96 (178)
T 3hm2_A           25 PHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPR----AFD---DVPDNPD   96 (178)
T ss_dssp             TTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTG----GGG---GCCSCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHh----hhh---ccCCCCC
Confidence            45789999999999999887762 113478999999988888776544322212233445432    111   1116799


Q ss_pred             EEEEcCCCCC
Q 006634          583 FVICQNSVPQ  592 (637)
Q Consensus       583 LVIGGpPCQ~  592 (637)
                      +|+.+.+...
T Consensus        97 ~i~~~~~~~~  106 (178)
T 3hm2_A           97 VIFIGGGLTA  106 (178)
T ss_dssp             EEEECC-TTC
T ss_pred             EEEECCcccH
Confidence            9997665544

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=93.44  E-value=0.11  Score=49.45  Aligned_cols=78  Identities=15%  Similarity=0.105  Sum_probs=56.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +.+.+|||+-||.|.+...+.+.  |.   .++++|+++......+.......  ...+..+|+.++...         +
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~---------~  108 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEA---TFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFE---------E  108 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTC---EEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCC---eEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCC---------C
Confidence            45689999999999999999888  54   47899999998888776543221  233456777765431         4


Q ss_pred             CccEEEEcCCCCCc
Q 006634          580 SIDFVICQNSVPQI  593 (637)
Q Consensus       580 ~~DLVIGGpPCQ~F  593 (637)
                      .+|+|+......-+
T Consensus       109 ~fD~v~~~~~l~~~  122 (234)
T 3dtn_A          109 KYDMVVSALSIHHL  122 (234)
T ss_dssp             CEEEEEEESCGGGS
T ss_pred             CceEEEEeCccccC
Confidence            79999987654433

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=93.43  E-value=0.073  Score=51.14  Aligned_cols=75  Identities=20%  Similarity=0.129  Sum_probs=51.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...|.+.+.  ..++++|+++.+....+......+.....++..|+.++..        ..+.||
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD  148 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP--------EPDSYD  148 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcC--CEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC--------CCCCEE
Confidence            468999999999999998887763  3578999999998888776543211111234566655432        124689


Q ss_pred             EEEEc
Q 006634          583 FVICQ  587 (637)
Q Consensus       583 LVIGG  587 (637)
                      +|+..
T Consensus       149 ~v~~~  153 (241)
T 2ex4_A          149 VIWIQ  153 (241)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99855

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=93.30  E-value=0.13  Score=51.49  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=51.7

Q ss_pred             cCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634          500 MFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       500 ~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      ..+.+.+|||+-||.|.+...+..+..+-..++++|+++......+.+....+... ..++.+|+.++..        . 
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~-  185 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT--------R-  185 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC--------C-
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc--------c-
Confidence            34567899999999999988873222222357899999999888887664332111 2245677766542        1 


Q ss_pred             CCccEEEEc
Q 006634          579 GSIDFVICQ  587 (637)
Q Consensus       579 g~~DLVIGG  587 (637)
                      +.||+|+..
T Consensus       186 ~~fD~v~~~  194 (305)
T 3ocj_A          186 EGYDLLTSN  194 (305)
T ss_dssp             SCEEEEECC
T ss_pred             CCeEEEEEC
Confidence            467888743

>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=93.30  E-value=0.076  Score=44.55  Aligned_cols=39  Identities=23%  Similarity=0.373  Sum_probs=34.0

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      .+++..|+.|||++++|..|+.+|+-+  ++.-+++++..+
T Consensus        30 ee~I~~L~eMGF~r~~a~~AL~~~~~n--ve~Ave~Ll~~~   68 (73)
T 1vg5_A           30 EEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQS   68 (73)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCC
Confidence            467889999999999999999999975  777788888765

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=93.29  E-value=0.15  Score=49.38  Aligned_cols=93  Identities=14%  Similarity=0.198  Sum_probs=61.5

Q ss_pred             cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006634          486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  565 (637)
Q Consensus       486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~  565 (637)
                      +...+..++..+..  ..+.+|||+-||.|.+...|.+.+.   .++++|+++......+......+.....+..+|+.+
T Consensus        22 ~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~   96 (260)
T 1vl5_A           22 KGSDLAKLMQIAAL--KGNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ   96 (260)
T ss_dssp             -CCCHHHHHHHHTC--CSCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-C
T ss_pred             CHHHHHHHHHHhCC--CCCCEEEEEeCCCCHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHh
Confidence            44455555555532  2467999999999999999988874   578999999988877765543322223356678776


Q ss_pred             cChhhHHHhhhccCCccEEEEcCCCC
Q 006634          566 LTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       566 Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                      +.-        ..+.||+|+.....+
T Consensus        97 l~~--------~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           97 MPF--------TDERFHIVTCRIAAH  114 (260)
T ss_dssp             CCS--------CTTCEEEEEEESCGG
T ss_pred             CCC--------CCCCEEEEEEhhhhH
Confidence            541        124789998765443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=93.25  E-value=0.18  Score=47.36  Aligned_cols=83  Identities=19%  Similarity=0.135  Sum_probs=55.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...+.+.+-+-..++++|+++......+......+.....+..+|+...-.        ..+.+|
T Consensus        77 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD  148 (215)
T 2yxe_A           77 PGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYE--------PLAPYD  148 (215)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCG--------GGCCEE
T ss_pred             CCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC--------CCCCee
Confidence            467999999999999988887652112478999999988877776543322222234556532111        135799


Q ss_pred             EEEEcCCCCCc
Q 006634          583 FVICQNSVPQI  593 (637)
Q Consensus       583 LVIGGpPCQ~F  593 (637)
                      +|+...++..+
T Consensus       149 ~v~~~~~~~~~  159 (215)
T 2yxe_A          149 RIYTTAAGPKI  159 (215)
T ss_dssp             EEEESSBBSSC
T ss_pred             EEEECCchHHH
Confidence            99988776654

>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=93.25  E-value=0.078  Score=43.07  Aligned_cols=41  Identities=17%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhccccc
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQIFL  193 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq~a~  193 (637)
                      +++..|+.|||++++|..|+..|+-+  ++.-++.|+..+...
T Consensus        11 ~~I~~L~~MGF~~~~a~~AL~~~~~n--ve~A~e~L~~~~~~~   51 (63)
T 1wji_A           11 KALKHITEMGFSKEASRQALMDNGNN--LEAALNVLLTSNKQK   51 (63)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHTTSC--HHHHHHHHHHHSSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHHHCCCCc
Confidence            56779999999999999999999974  888899999876433

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=93.17  E-value=0.18  Score=47.55  Aligned_cols=81  Identities=14%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             CCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc-
Q 006634          504 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL-  578 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~-  578 (637)
                      +.+|||+-||.|+.++.|.+.   +.   .++++|+++......+.++...+... ..++.+|+.+.    +..+.... 
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~~~~  137 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDG---TLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDT----LAELIHAGQ  137 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHTTTC
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCC---EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHH----HHHhhhccC
Confidence            468999999999999998876   43   47899999999988888776543222 22445665432    21111111 


Q ss_pred             -CCccEEEEcCCCC
Q 006634          579 -GSIDFVICQNSVP  591 (637)
Q Consensus       579 -g~~DLVIGGpPCQ  591 (637)
                       +.||+|+--+|..
T Consensus       138 ~~~fD~v~~~~~~~  151 (225)
T 3tr6_A          138 AWQYDLIYIDADKA  151 (225)
T ss_dssp             TTCEEEEEECSCGG
T ss_pred             CCCccEEEECCCHH
Confidence             5799999665543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=93.16  E-value=0.11  Score=50.38  Aligned_cols=84  Identities=14%  Similarity=0.075  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+.+.+.+.+-. ..+++||+++.+....+.+....+.....++.+|+.++-    ... ...+.+|
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~-~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l----~~~-~~~~~~d  107 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE-QDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVL----HKM-IPDNSLR  107 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHH----HHH-SCTTCEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC-CeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHH----HHH-cCCCChh
Confidence            3568999999999999998876532 247899999998877776554332222334566665431    111 1235799


Q ss_pred             EEEEcCCCCC
Q 006634          583 FVICQNSVPQ  592 (637)
Q Consensus       583 LVIGGpPCQ~  592 (637)
                      +|+--+|+.-
T Consensus       108 ~v~~~~~~p~  117 (218)
T 3dxy_A          108 MVQLFFPDPW  117 (218)
T ss_dssp             EEEEESCCCC
T ss_pred             eEEEeCCCCc
Confidence            9998776553

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=93.14  E-value=0.16  Score=40.14  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=28.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  115 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~  115 (637)
                      +.|..|++|||+.++|.+|+....-+  ++.-..+|+
T Consensus        13 ~~Ia~Lm~mGFsr~~ai~AL~~a~nn--ve~AaniLl   47 (52)
T 2ooa_A           13 AKIAKLMGEGYAFEEVKRALEIAQNN--VEVARSILR   47 (52)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHH
Confidence            68999999999999999999999876  344444444

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=93.13  E-value=0.1  Score=49.91  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=59.5

Q ss_pred             hhhhccccccCCCCCcccccCCCCChHHHHHHH-cCC-----ceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccc
Q 006634          491 GYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGI-----KLKGVISIETSETNRRILKRWWESSG-----QTGELVQ  559 (637)
Q Consensus       491 ~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi-----~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~  559 (637)
                      +..+..|......+.+|||+-||.|.+...|.+ .|.     . ..++++|+++...+..+.+....+     .....+.
T Consensus        72 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~  150 (227)
T 1r18_A           72 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDAD-TRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIV  150 (227)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTT-CEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCcc-CEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEE
Confidence            333444543344567999999999999988876 341     0 147899999998887766543221     1112244


Q ss_pred             cccccccChhhHHHhhhccCCccEEEEcCCCCCc
Q 006634          560 IEDIQALTTKKFESLIHKLGSIDFVICQNSVPQI  593 (637)
Q Consensus       560 ~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~F  593 (637)
                      .+|+.+.-.        ..+.||+|+...++..+
T Consensus       151 ~~d~~~~~~--------~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          151 EGDGRKGYP--------PNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             ESCGGGCCG--------GGCSEEEEEECSCBSSC
T ss_pred             ECCcccCCC--------cCCCccEEEECCchHHH
Confidence            566654111        12579999988887665

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=93.11  E-value=0.17  Score=48.82  Aligned_cols=84  Identities=13%  Similarity=0.015  Sum_probs=58.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|.....|.+++- -..++++|+++...+..+.++...+.. ...++.+|+.++-..   .+   .+.|
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~---~~~f  143 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISD-DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFEN---VN---DKVY  143 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCT-TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHH---HT---TSCE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHh---hc---cCCc
Confidence            357899999999999999988432 235789999999999888887654332 223456777654220   11   2579


Q ss_pred             cEEEEcCCCCCc
Q 006634          582 DFVICQNSVPQI  593 (637)
Q Consensus       582 DLVIGGpPCQ~F  593 (637)
                      |+|+-..++..+
T Consensus       144 D~V~~~~~~~~~  155 (232)
T 3ntv_A          144 DMIFIDAAKAQS  155 (232)
T ss_dssp             EEEEEETTSSSH
T ss_pred             cEEEEcCcHHHH
Confidence            999987776654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=93.10  E-value=0.11  Score=50.74  Aligned_cols=78  Identities=15%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+.+|||+-||.|++...+.+.|.  ..++++|+++......+......+. ....+...|+.++.-.       ..+.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-------~~~~  133 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGI--GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------LGKE  133 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC--SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------CSSC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC-------CCCC
Confidence            4578999999999999999988885  3578999999998888776543321 1122456677654210       1246


Q ss_pred             ccEEEEcC
Q 006634          581 IDFVICQN  588 (637)
Q Consensus       581 ~DLVIGGp  588 (637)
                      ||+|+...
T Consensus       134 fD~v~~~~  141 (298)
T 1ri5_A          134 FDVISSQF  141 (298)
T ss_dssp             EEEEEEES
T ss_pred             cCEEEECc
Confidence            78887654

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=93.10  E-value=0.094  Score=53.31  Aligned_cols=81  Identities=14%  Similarity=0.194  Sum_probs=53.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  576 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~  576 (637)
                      +.+.+||+|.||.|++...+.+. +.  ..+++||+|+...+..+.++...    +.....++.+|+.+.-.       .
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~-------~  159 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSV--EKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVR-------K  159 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTC--SEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGG-------G
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCC--CEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHh-------h
Confidence            35579999999999999888776 33  45789999999999888876421    11222345566543211       1


Q ss_pred             ccCCccEEEEcCCCC
Q 006634          577 KLGSIDFVICQNSVP  591 (637)
Q Consensus       577 ~~g~~DLVIGGpPCQ  591 (637)
                      ..+.||+|+..+||.
T Consensus       160 ~~~~fD~Ii~d~~~~  174 (296)
T 1inl_A          160 FKNEFDVIIIDSTDP  174 (296)
T ss_dssp             CSSCEEEEEEEC---
T ss_pred             CCCCceEEEEcCCCc
Confidence            125799999888774

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=93.09  E-value=0.18  Score=47.19  Aligned_cols=73  Identities=22%  Similarity=0.145  Sum_probs=54.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...|.+.|..   ++++|+++......+....    ....+..+|+.++...         +.||
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~---------~~fD  108 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGRT---VYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVP---------TSID  108 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTCE---EEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCC---------SCCS
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCCe---EEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCC---------CCeE
Confidence            4678999999999999999998863   6899999998887765432    1233567788776421         4789


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+......
T Consensus       109 ~v~~~~~l~  117 (220)
T 3hnr_A          109 TIVSTYAFH  117 (220)
T ss_dssp             EEEEESCGG
T ss_pred             EEEECcchh
Confidence            998765433

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=93.07  E-value=0.11  Score=52.58  Aligned_cols=81  Identities=15%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+||||-||.|.+++.|.+.|.+   |+++|+++......+......      .+..|+.+++.....   ...+.|
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~~---V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~---~~~~~f  111 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGAS---VTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPK---ELAGHF  111 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTCE---EEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCG---GGTTCC
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCCE---EEEEECCHHHHHHHHHHHHhc------cceeeeeeccccccc---ccCCCc
Confidence            35679999999999999999999863   789999999988887643211      234555555430000   012579


Q ss_pred             cEEEEcCCCCCcC
Q 006634          582 DFVICQNSVPQIP  594 (637)
Q Consensus       582 DLVIGGpPCQ~FS  594 (637)
                      |+|+.....+.|.
T Consensus       112 D~Vv~~~~l~~~~  124 (261)
T 3iv6_A          112 DFVLNDRLINRFT  124 (261)
T ss_dssp             SEEEEESCGGGSC
T ss_pred             cEEEEhhhhHhCC
Confidence            9999876555443

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=93.04  E-value=0.14  Score=51.01  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=52.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh-----------------cCCCCCccccccccc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES-----------------SGQTGELVQIEDIQA  565 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~-----------------tn~~g~l~~~~DI~~  565 (637)
                      .+.+|||+=||.|....-|.+.|+.   |++||+++.+.+..+.....                 .......++.+|+.+
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~---V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHT---VVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCe---EEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            4679999999999999999999984   78999999998877543210                 001122345678876


Q ss_pred             cChhhHHHhhhccCCccEEEE
Q 006634          566 LTTKKFESLIHKLGSIDFVIC  586 (637)
Q Consensus       566 Lt~~~Ie~l~~~~g~~DLVIG  586 (637)
                      +...       ..+.||+|+.
T Consensus       145 l~~~-------~~~~FD~V~~  158 (252)
T 2gb4_A          145 LPRA-------NIGKFDRIWD  158 (252)
T ss_dssp             GGGG-------CCCCEEEEEE
T ss_pred             CCcc-------cCCCEEEEEE
Confidence            6532       1257999984

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=93.01  E-value=0.17  Score=48.30  Aligned_cols=82  Identities=17%  Similarity=0.063  Sum_probs=55.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+.+.+.+.. +-..+++||+++.+....+.+....+.....++.+|+.++.     ..+ ..+.+|
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~-----~~~-~~~~~d  110 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT-----DVF-EPGEVK  110 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHH-----HHC-CTTSCC
T ss_pred             CCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHH-----hhc-CcCCcC
Confidence            35789999999999999988762 11247899999999887776654433222335667776532     111 124689


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      .|+-.+|+.
T Consensus       111 ~v~~~~~~p  119 (213)
T 2fca_A          111 RVYLNFSDP  119 (213)
T ss_dssp             EEEEESCCC
T ss_pred             EEEEECCCC
Confidence            988777654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=93.00  E-value=0.22  Score=46.85  Aligned_cols=46  Identities=11%  Similarity=0.030  Sum_probs=38.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .+.+|||+-||.|.+...|.+.|-. ..++++|+++.+....+..+.
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~-~~v~gvD~s~~~~~~a~~~~~   74 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSF-EQITGVDVSYSVLERAKDRLK   74 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTC-CEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCC-CEEEEEECCHHHHHHHHHHHH
Confidence            3579999999999999999988732 357899999999888877654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=92.99  E-value=0.11  Score=49.36  Aligned_cols=73  Identities=16%  Similarity=0.146  Sum_probs=51.1

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ++.+.+|||+-||.|.+...+.+. .   .++++|+++......+......+ ....+...|+.++..         .+.
T Consensus        31 ~~~~~~vLdiG~G~G~~~~~l~~~-~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~---------~~~   96 (243)
T 3d2l_A           31 VEPGKRIADIGCGTGTATLLLADH-Y---EVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL---------PEP   96 (243)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT-S---EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC---------SSC
T ss_pred             cCCCCeEEEecCCCCHHHHHHhhC-C---eEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC---------CCC
Confidence            444579999999999999888877 3   47899999999888877654332 222345667765531         146


Q ss_pred             ccEEEEc
Q 006634          581 IDFVICQ  587 (637)
Q Consensus       581 ~DLVIGG  587 (637)
                      +|+|+..
T Consensus        97 fD~v~~~  103 (243)
T 3d2l_A           97 VDAITIL  103 (243)
T ss_dssp             EEEEEEC
T ss_pred             cCEEEEe
Confidence            8888753

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=92.98  E-value=0.08  Score=49.66  Aligned_cols=72  Identities=11%  Similarity=-0.016  Sum_probs=53.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...|.+.|.   .++++|+++.+....+......  ....++..|+.++..         .+.||
T Consensus        51 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~---------~~~fD  116 (216)
T 3ofk_A           51 AVSNGLEIGCAAGAFTEKLAPHCK---RLTVIDVMPRAIGRACQRTKRW--SHISWAATDILQFST---------AELFD  116 (216)
T ss_dssp             SEEEEEEECCTTSHHHHHHGGGEE---EEEEEESCHHHHHHHHHHTTTC--SSEEEEECCTTTCCC---------SCCEE
T ss_pred             CCCcEEEEcCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHhcccC--CCeEEEEcchhhCCC---------CCCcc
Confidence            457899999999999999998874   4789999999988887654321  122356778876652         25799


Q ss_pred             EEEEcC
Q 006634          583 FVICQN  588 (637)
Q Consensus       583 LVIGGp  588 (637)
                      +|+...
T Consensus       117 ~v~~~~  122 (216)
T 3ofk_A          117 LIVVAE  122 (216)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            999753

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=92.96  E-value=0.13  Score=58.83  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=54.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcC------Cc-----------------------------------eeeEEEeecCHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLG------IK-----------------------------------LKGVISIETSETNR  541 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aG------i~-----------------------------------~k~vvaVEid~~a~  541 (637)
                      .+.+++|.|||.|++.+.+...+      +.                                   -..++++|+|+.+.
T Consensus       190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av  269 (703)
T 3v97_A          190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI  269 (703)
T ss_dssp             TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred             CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence            45789999999999976544332      10                                   02478999999999


Q ss_pred             HHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCccEEEEcCCC
Q 006634          542 RILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       542 ~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      ++-+.+....+-.. ..+..+|+.++....      ..+.+|+||.-||=
T Consensus       270 ~~A~~N~~~agv~~~i~~~~~D~~~~~~~~------~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          270 QRARTNARLAGIGELITFEVKDVAQLTNPL------PKGPYGTVLSNPPY  313 (703)
T ss_dssp             HHHHHHHHHTTCGGGEEEEECCGGGCCCSC------TTCCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCceEEEECChhhCcccc------ccCCCCEEEeCCCc
Confidence            98888766543222 224567777654210      11379999999983

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=92.93  E-value=0.23  Score=47.69  Aligned_cols=77  Identities=13%  Similarity=0.066  Sum_probs=50.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+||||-||.|.+...|.+. | . ..|+++|+++.+.+..+.+....  ....++.+|+.+...     .....+.|
T Consensus        74 ~~~~VLDlGcG~G~~~~~la~~~~-~-~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~-----~~~~~~~~  144 (230)
T 1fbn_A           74 RDSKILYLGASAGTTPSHVADIAD-K-GIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQE-----YANIVEKV  144 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTT-T-SEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGG-----GTTTSCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHcC-C-cEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccc-----ccccCccE
Confidence            4678999999999999888765 5 2 35789999999887776643221  222345677765211     00001578


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+...
T Consensus       145 D~v~~~~  151 (230)
T 1fbn_A          145 DVIYEDV  151 (230)
T ss_dssp             EEEEECC
T ss_pred             EEEEEec
Confidence            9998443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=92.93  E-value=0.15  Score=48.76  Aligned_cols=72  Identities=8%  Similarity=-0.013  Sum_probs=52.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccccccc-ccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ-ALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~-~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+.+|||+-||.|.+...+.+.|.   .|+++|+++......+..     .....++..|+. .+..       ...+.
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~-------~~~~~  111 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA---RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPA-------GLGAP  111 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCT-------TCCCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC---EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCC-------cCCCC
Confidence            4568999999999999999999886   478999999988877654     222335677874 2221       00257


Q ss_pred             ccEEEEcC
Q 006634          581 IDFVICQN  588 (637)
Q Consensus       581 ~DLVIGGp  588 (637)
                      ||+|+..+
T Consensus       112 fD~v~~~~  119 (226)
T 3m33_A          112 FGLIVSRR  119 (226)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEeCC
Confidence            99999764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=92.92  E-value=0.2  Score=49.87  Aligned_cols=73  Identities=18%  Similarity=0.233  Sum_probs=53.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +.+.+|||+-||.|++...+.+. |.   .|+++|+++......+......+.. ...+..+|+.++           .+
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----------~~  136 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDV---NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-----------DE  136 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-----------CC
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-----------CC
Confidence            34679999999999999998877 84   3789999999988887766543322 122456777665           14


Q ss_pred             CccEEEEcC
Q 006634          580 SIDFVICQN  588 (637)
Q Consensus       580 ~~DLVIGGp  588 (637)
                      .||+|+...
T Consensus       137 ~fD~v~~~~  145 (302)
T 3hem_A          137 PVDRIVSLG  145 (302)
T ss_dssp             CCSEEEEES
T ss_pred             CccEEEEcc
Confidence            789988653

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=92.90  E-value=0.17  Score=53.99  Aligned_cols=41  Identities=17%  Similarity=0.083  Sum_probs=35.2

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      +..+.|..|+.|||++..|.+|+..|+-+-  +.=+++|+.+.
T Consensus       324 ee~eaI~rL~~mGF~~~~a~~al~a~~~n~--e~A~~~L~~~~  364 (368)
T 1oqy_A          324 QEKEAIERLKALGFPESLVIQAYFACEKNE--NLAANFLLSQN  364 (368)
T ss_dssp             TTHHHHHHHHHHTCCSHHHHHHTSSSSSCS--SHHHHHHHHHH
T ss_pred             cCHHHHHHHHHcCCCHHHHHHHHHHcCCCH--HHHHHHHhhCc
Confidence            456789999999999999999999999764  56689999763

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=92.90  E-value=0.11  Score=51.33  Aligned_cols=79  Identities=14%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+-||.|...+.+..+.=. ..|+++|+++.+....+.+....+.....++.+|+.++....     ...+.|
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~-----~~~~~f  152 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE-LELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA-----GHREAY  152 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST-----TTTTCE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc-----ccCCCc
Confidence            45789999999999888877765211 247899999999998887765443222334556665543210     012579


Q ss_pred             cEEEE
Q 006634          582 DFVIC  586 (637)
Q Consensus       582 DLVIG  586 (637)
                      |+|+.
T Consensus       153 D~I~s  157 (249)
T 3g89_A          153 ARAVA  157 (249)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            99985

>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1

Probab=92.86  E-value=0.083  Score=38.20  Aligned_cols=27  Identities=22%  Similarity=0.316  Sum_probs=23.9

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSK  176 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~d  176 (637)
                      .+++..|+.|||++++|..|+..|+-+
T Consensus         5 ~~~i~~L~~mGf~~~~a~~AL~~~~~n   31 (40)
T 1z96_A            5 NSKIAQLVSMGFDPLEAAQALDAANGD   31 (40)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC
Confidence            357779999999999999999999865

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=92.85  E-value=0.21  Score=49.85  Aligned_cols=53  Identities=17%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  551 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t  551 (637)
                      .++.+.+-+|+|+=||.|-+.+.+.+.|. ...|+|+|+++.+....+.+....
T Consensus        16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~AvDi~~~al~~A~~N~~~~   68 (230)
T 3lec_A           16 ANYVPKGARLLDVGSDHAYLPIFLLQMGY-CDFAIAGEVVNGPYQSALKNVSEH   68 (230)
T ss_dssp             HTTSCTTEEEEEETCSTTHHHHHHHHTTC-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEECCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            34455678999999999999999999884 346889999999999888876544

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=92.79  E-value=0.15  Score=51.32  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=55.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIH  576 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~  576 (637)
                      +++.+||+|.||.|++...+.+. |.  .-+++||+|+...+..+.++...    +.+...++.+|..+.    +.   .
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~--~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~----l~---~  144 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSV--KKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMH----IA---K  144 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTC--SEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHH----HH---T
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCC--ceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHH----Hh---h
Confidence            45689999999999998888776 43  45889999999999998876431    112223455665431    11   1


Q ss_pred             ccCCccEEEEcCCC
Q 006634          577 KLGSIDFVICQNSV  590 (637)
Q Consensus       577 ~~g~~DLVIGGpPC  590 (637)
                      ..+.+|+|+-.+|.
T Consensus       145 ~~~~fD~Ii~d~~~  158 (275)
T 1iy9_A          145 SENQYDVIMVDSTE  158 (275)
T ss_dssp             CCSCEEEEEESCSS
T ss_pred             CCCCeeEEEECCCC
Confidence            12579999987765

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=92.78  E-value=0.19  Score=52.63  Aligned_cols=74  Identities=16%  Similarity=0.186  Sum_probs=53.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+||||.||.|.+++.+.++|.  +-|++||++ ......+.+....+... ..++.+|+.++...         +.|
T Consensus        63 ~~~~VLDlGcGtG~ls~~la~~g~--~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---------~~~  130 (376)
T 3r0q_C           63 EGKTVLDVGTGSGILAIWSAQAGA--RKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP---------EKV  130 (376)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTC--SEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS---------SCE
T ss_pred             CCCEEEEeccCcCHHHHHHHhcCC--CEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC---------Ccc
Confidence            467899999999999999999986  357899999 55555555544332222 23567888776521         579


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+..+
T Consensus       131 D~Iv~~~  137 (376)
T 3r0q_C          131 DVIISEW  137 (376)
T ss_dssp             EEEEECC
T ss_pred             eEEEEcC
Confidence            9999744

>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.69  E-value=0.082  Score=45.44  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=34.9

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      .+++..|+.|||++++|..|+..+|-+  ++.-+++++.-+
T Consensus        30 ee~I~~Lv~MGF~~~~A~~AL~~t~gd--ve~A~e~L~sh~   68 (83)
T 1veg_A           30 QESINQLVYMGFDTVVAEAALRVFGGN--VQLAAQTLAHHG   68 (83)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHTTTC--HHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            368889999999999999999999988  888899999854

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=92.64  E-value=0.26  Score=47.33  Aligned_cols=81  Identities=23%  Similarity=0.271  Sum_probs=54.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+.||.|.+...+.+.+-  ..++++|+++...+..+.+....+.....+..+|+. ..   +.    ..+.||
T Consensus        91 ~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~-~~---~~----~~~~fD  160 (235)
T 1jg1_A           91 PGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGS-KG---FP----PKAPYD  160 (235)
T ss_dssp             TTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGG-GC---CG----GGCCEE
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcc-cC---CC----CCCCcc
Confidence            457899999999999998887652  247899999998888777654332222223455551 11   11    123589


Q ss_pred             EEEEcCCCCCc
Q 006634          583 FVICQNSVPQI  593 (637)
Q Consensus       583 LVIGGpPCQ~F  593 (637)
                      +|+...++..+
T Consensus       161 ~Ii~~~~~~~~  171 (235)
T 1jg1_A          161 VIIVTAGAPKI  171 (235)
T ss_dssp             EEEECSBBSSC
T ss_pred             EEEECCcHHHH
Confidence            99988776655

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=92.63  E-value=0.13  Score=49.51  Aligned_cols=75  Identities=16%  Similarity=0.112  Sum_probs=52.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...|.+.+.  ..++++|+++...+..+.+....+ ....++.+|+.++..    .  ...+.||
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~----~--~~~~~fD  130 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAP----T--LPDGHFD  130 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGG----G--SCTTCEE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC--CeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhc----c--cCCCceE
Confidence            467999999999999999987764  367899999999888887654321 222234566654311    0  0125799


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus       131 ~V~~  134 (236)
T 1zx0_A          131 GILY  134 (236)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9997

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=92.60  E-value=0.16  Score=38.83  Aligned_cols=39  Identities=21%  Similarity=0.102  Sum_probs=32.0

Q ss_pred             hhhHHHHHHHhcCCC-HHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634           76 LHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITA  116 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~-~eeV~~AI~~~G~da~i~~Lld~I~a  116 (637)
                      ....++..|+.|||+ ++.+..|+..++-+  ++.-+|+|++
T Consensus         6 ~~~~~i~~L~~MGF~d~~~~~~AL~~~~gn--v~~Ave~L~~   45 (46)
T 2bwb_A            6 RYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLN   45 (46)
T ss_dssp             HTHHHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHc
Confidence            456788999999996 56689999999965  5788898874

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=92.59  E-value=0.22  Score=48.79  Aligned_cols=79  Identities=22%  Similarity=0.225  Sum_probs=53.8

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc-C--CCCCccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-G--QTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t-n--~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|||+.||.|.+...+.++ |-. ..++++|+++.+....+.+.... +  .....+..+|+.++..        ..
T Consensus        99 ~~~~vLdiG~G~G~~~~~l~~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~--------~~  169 (280)
T 1i9g_A           99 PGARVLEAGAGSGALTLSLLRAVGPA-GQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL--------PD  169 (280)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC--------CT
T ss_pred             CCCEEEEEcccccHHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC--------CC
Confidence            4578999999999999998874 311 24789999999988887765432 1  1122345677765421        12


Q ss_pred             CCccEEEEcCCC
Q 006634          579 GSIDFVICQNSV  590 (637)
Q Consensus       579 g~~DLVIGGpPC  590 (637)
                      +.+|+|+...|.
T Consensus       170 ~~~D~v~~~~~~  181 (280)
T 1i9g_A          170 GSVDRAVLDMLA  181 (280)
T ss_dssp             TCEEEEEEESSC
T ss_pred             CceeEEEECCcC
Confidence            479999987663

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=92.57  E-value=0.1  Score=58.16  Aligned_cols=84  Identities=12%  Similarity=0.082  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc-C-CceeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-G-IKLKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-G-i~~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|+|.+||.|||-+.+.+. . ..-..++++|+++.+.++.+.+..-++..  ...+..+|.-..+-   .  ....
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~---p--~~~~  295 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDW---P--TQEP  295 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCS---C--CSSC
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccc---c--cccc
Confidence            4689999999999998766543 1 01235899999999988877654333211  11233444332210   0  0123


Q ss_pred             CCccEEEEcCCCC
Q 006634          579 GSIDFVICQNSVP  591 (637)
Q Consensus       579 g~~DLVIGGpPCQ  591 (637)
                      +.||+|+|-||-.
T Consensus       296 ~~fD~IvaNPPf~  308 (542)
T 3lkd_A          296 TNFDGVLMNPPYS  308 (542)
T ss_dssp             CCBSEEEECCCTT
T ss_pred             ccccEEEecCCcC
Confidence            5799999999975

>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=92.56  E-value=0.095  Score=43.73  Aligned_cols=39  Identities=26%  Similarity=0.404  Sum_probs=33.6

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      .+++..|+.|||++++|..|+..||-  .++.=++.|+..+
T Consensus        30 ~~~v~~L~~MGF~~~~a~~AL~~t~~--nve~Ave~L~~~~   68 (73)
T 1wiv_A           30 QSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHhCC
Confidence            36777999999999999999999997  5777788888755

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=92.54  E-value=0.094  Score=49.59  Aligned_cols=73  Identities=15%  Similarity=0.144  Sum_probs=50.8

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006634          496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  575 (637)
Q Consensus       496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~  575 (637)
                      .|+.+.+.+.+|||+-||.|.+...|.+.|.   .++++|+++......+....     ...+...|+.++..       
T Consensus        33 ~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~---~v~~~D~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-------   97 (239)
T 3bxo_A           33 LVRSRTPEASSLLDVACGTGTHLEHFTKEFG---DTAGLELSEDMLTHARKRLP-----DATLHQGDMRDFRL-------   97 (239)
T ss_dssp             HHHHHCTTCCEEEEETCTTSHHHHHHHHHHS---EEEEEESCHHHHHHHHHHCT-----TCEEEECCTTTCCC-------
T ss_pred             HHHHhcCCCCeEEEecccCCHHHHHHHHhCC---cEEEEeCCHHHHHHHHHhCC-----CCEEEECCHHHccc-------
Confidence            3444445678999999999999999998875   47889999998887765431     12245566655431       


Q ss_pred             hccCCccEEE
Q 006634          576 HKLGSIDFVI  585 (637)
Q Consensus       576 ~~~g~~DLVI  585 (637)
                        .+.+|+|+
T Consensus        98 --~~~~D~v~  105 (239)
T 3bxo_A           98 --GRKFSAVV  105 (239)
T ss_dssp             --SSCEEEEE
T ss_pred             --CCCCcEEE
Confidence              13577777

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=92.46  E-value=0.15  Score=50.79  Aligned_cols=70  Identities=16%  Similarity=0.189  Sum_probs=51.2

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC---CCCccccccccccChhhHHHhhhccCCc
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ---TGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~---~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      -+||||-||.|.+...|.+.|..   |+++|+++......+......+.   ....++.+|+.++..         .+.|
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~f  151 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDLGWE---VTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL---------DKRF  151 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTTTCC---EEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC---------SCCE
T ss_pred             CcEEEEeccCCHHHHHHHHcCCe---EEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc---------CCCc
Confidence            49999999999999999999864   68999999998888776543210   122356778876542         2468


Q ss_pred             cEEEE
Q 006634          582 DFVIC  586 (637)
Q Consensus       582 DLVIG  586 (637)
                      |+|+.
T Consensus       152 D~v~~  156 (299)
T 3g2m_A          152 GTVVI  156 (299)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            87773

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=92.45  E-value=0.23  Score=46.98  Aligned_cols=74  Identities=22%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...+.+.|..  .++++|+++......+.....   ....+...|+.++..        ..+.||
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~~~--~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~--------~~~~fD  109 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHGAS--YVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL--------PQDSFD  109 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC--------CTTCEE
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCCCC--eEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC--------CCCCce
Confidence            4578999999999999999999862  478999999988877654321   122245566665431        124577


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +|+....
T Consensus       110 ~v~~~~~  116 (243)
T 3bkw_A          110 LAYSSLA  116 (243)
T ss_dssp             EEEEESC
T ss_pred             EEEEecc
Confidence            7776543

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=92.44  E-value=0.23  Score=50.06  Aligned_cols=53  Identities=11%  Similarity=-0.104  Sum_probs=43.2

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  551 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t  551 (637)
                      .++.+.+-+|+|+=||.|-+.+.+.+.|- ...|+++|+++.+....+.+....
T Consensus        16 ~~~v~~g~~VlDIGtGsG~l~i~la~~~~-~~~V~avDi~~~al~~A~~N~~~~   68 (244)
T 3gnl_A           16 ASYITKNERIADIGSDHAYLPCFAVKNQT-ASFAIAGEVVDGPFQSAQKQVRSS   68 (244)
T ss_dssp             HTTCCSSEEEEEETCSTTHHHHHHHHTTS-EEEEEEEESSHHHHHHHHHHHHHT
T ss_pred             HHhCCCCCEEEEECCccHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHc
Confidence            34455678999999999999999999884 346899999999999888776543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=92.39  E-value=0.3  Score=46.74  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=49.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+.||.|++...|.+. |-. ..++++|+++.+...+...-.. + ....++.+|+.+...  +.   ...+.|
T Consensus        77 ~~~~vLDlG~G~G~~~~~la~~~g~~-~~v~gvD~s~~~i~~~~~~a~~-~-~~v~~~~~d~~~~~~--~~---~~~~~~  148 (233)
T 2ipx_A           77 PGAKVLYLGAASGTTVSHVSDIVGPD-GLVYAVEFSHRSGRDLINLAKK-R-TNIIPVIEDARHPHK--YR---MLIAMV  148 (233)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEECCCHHHHHHHHHHHHH-C-TTEEEECSCTTCGGG--GG---GGCCCE
T ss_pred             CCCEEEEEcccCCHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHhhc-c-CCeEEEEcccCChhh--hc---ccCCcE
Confidence            4678999999999999888765 311 2478999998754433332222 1 223355677765321  11   113579


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+..+|
T Consensus       149 D~V~~~~~  156 (233)
T 2ipx_A          149 DVIFADVA  156 (233)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99998655

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=92.37  E-value=0.25  Score=50.89  Aligned_cols=76  Identities=17%  Similarity=0.163  Sum_probs=54.5

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+||||-||.|.+...+.+.|-.. .++++|+++.+....+.+....+.. ..+...|+.+..          .+.||+
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~----------~~~fD~  264 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKI-RLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV----------KGRFDM  264 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTC-BCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC----------CSCEEE
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCC-EEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc----------cCCeeE
Confidence            3589999999999999998887432 4689999999888887766543222 223455654321          247999


Q ss_pred             EEEcCCCC
Q 006634          584 VICQNSVP  591 (637)
Q Consensus       584 VIGGpPCQ  591 (637)
                      |+..+|..
T Consensus       265 Iv~~~~~~  272 (343)
T 2pjd_A          265 IISNPPFH  272 (343)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=92.32  E-value=0.18  Score=48.22  Aligned_cols=85  Identities=16%  Similarity=0.139  Sum_probs=56.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|++...+.+.. +-..++++|+++...+..+.++...+... ..+..+|+.+.-    .... ..+.|
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~-~~~~f  127 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLG----EKLE-LYPLF  127 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHC-TTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSH----HHHT-TSCCE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHH----Hhcc-cCCCc
Confidence            35689999999999999888762 11247899999999888888775443211 223456665431    1110 12579


Q ss_pred             cEEEEcCCCCCc
Q 006634          582 DFVICQNSVPQI  593 (637)
Q Consensus       582 DLVIGGpPCQ~F  593 (637)
                      |+|+...||...
T Consensus       128 D~I~~~~~~~~~  139 (233)
T 2gpy_A          128 DVLFIDAAKGQY  139 (233)
T ss_dssp             EEEEEEGGGSCH
T ss_pred             cEEEECCCHHHH
Confidence            999998888644

>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=92.29  E-value=0.21  Score=39.60  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  116 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a  116 (637)
                      ..|..|+.|||+.++|.+|+....-+  ++.-.++|+.
T Consensus        11 ~~I~~L~~lGF~r~~ai~AL~~a~nn--ve~Aa~iL~e   46 (53)
T 2d9s_A           11 SEIERLMSQGYSYQDIQKALVIAHNN--IEMAKNILRE   46 (53)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhcCC--HHHHHHHHHH
Confidence            45999999999999999999999876  4555555543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=92.25  E-value=0.25  Score=49.39  Aligned_cols=78  Identities=15%  Similarity=0.139  Sum_probs=52.5

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcC-CceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLG-IKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aG-i~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+-+||||=||.|.+.+.|.+.. .+---|++||+++......+......+... ..++.+|+.++..          
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~----------  137 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI----------  137 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC----------
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc----------
Confidence            3457899999999999999887642 111136899999998877776554332221 2245688876642          


Q ss_pred             CCccEEEEcC
Q 006634          579 GSIDFVICQN  588 (637)
Q Consensus       579 g~~DLVIGGp  588 (637)
                      +++|+|+...
T Consensus       138 ~~~d~v~~~~  147 (261)
T 4gek_A          138 ENASMVVLNF  147 (261)
T ss_dssp             CSEEEEEEES
T ss_pred             cccccceeee
Confidence            4678887654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=92.23  E-value=0.19  Score=48.14  Aligned_cols=75  Identities=13%  Similarity=0.213  Sum_probs=51.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+.+|||+-||.|.+...+.+. |.   .++++|+++......+......  ....++..|+.++..        ..+.
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~---~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~  120 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA---HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF--------PENN  120 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC--------CTTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC--------CCCc
Confidence            34679999999999999998886 65   4789999999888776543211  222345677766531        1246


Q ss_pred             ccEEEEcCC
Q 006634          581 IDFVICQNS  589 (637)
Q Consensus       581 ~DLVIGGpP  589 (637)
                      ||+|+....
T Consensus       121 fD~v~~~~~  129 (266)
T 3ujc_A          121 FDLIYSRDA  129 (266)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEeHHHH
Confidence            888886543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=92.15  E-value=0.19  Score=48.97  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=52.8

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+.+|||+-||.|.+...|.+.|..   ++++|+++...+..+....     .. +...|+.++..        ..+.
T Consensus        52 ~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~l~~a~~~~~-----~~-~~~~d~~~~~~--------~~~~  114 (260)
T 2avn_A           52 LKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKGV-----KN-VVEAKAEDLPF--------PSGA  114 (260)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHTC-----SC-EEECCTTSCCS--------CTTC
T ss_pred             cCCCCeEEEeCCCcCHHHHHHHHcCCe---EEEEeCCHHHHHHHHhhcC-----CC-EEECcHHHCCC--------CCCC
Confidence            345679999999999999999998863   7899999998887765321     12 55677776541        1247


Q ss_pred             ccEEEEcCC
Q 006634          581 IDFVICQNS  589 (637)
Q Consensus       581 ~DLVIGGpP  589 (637)
                      ||+|+...+
T Consensus       115 fD~v~~~~~  123 (260)
T 2avn_A          115 FEAVLALGD  123 (260)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEcch
Confidence            999996543

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=92.15  E-value=0.13  Score=52.29  Aligned_cols=103  Identities=10%  Similarity=0.043  Sum_probs=64.3

Q ss_pred             Hhhhhhhccc--chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCc-eeeEEEeecCHHHHHHHHHHhhhcCCCC
Q 006634          479 ESLRHCFQTD--TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIK-LKGVISIETSETNRRILKRWWESSGQTG  555 (637)
Q Consensus       479 k~Lgnsfqvd--tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~-~k~vvaVEid~~a~~t~r~~~~~tn~~g  555 (637)
                      |.+|..|-+|  .+..++..+..  ..+-+|||+=||.|.++..|.+.|-+ -..|+++|+|+.....++..+ ..   .
T Consensus        18 k~~GQ~fL~d~~i~~~iv~~~~~--~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-~~---~   91 (279)
T 3uzu_A           18 KRFGQNFLVDHGVIDAIVAAIRP--ERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-GE---L   91 (279)
T ss_dssp             CCCSCCEECCHHHHHHHHHHHCC--CTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-GG---G
T ss_pred             ccCCccccCCHHHHHHHHHhcCC--CCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-CC---C
Confidence            3446656444  33333433321  24678999999999999999887642 011789999999999887753 11   2


Q ss_pred             CccccccccccChhhHHHhhhccCCccEEEEcCC
Q 006634          556 ELVQIEDIQALTTKKFESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       556 ~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpP  589 (637)
                      ..++.+|+.+++-..+..  ........|+|-.|
T Consensus        92 v~~i~~D~~~~~~~~~~~--~~~~~~~~vv~NlP  123 (279)
T 3uzu_A           92 LELHAGDALTFDFGSIAR--PGDEPSLRIIGNLP  123 (279)
T ss_dssp             EEEEESCGGGCCGGGGSC--SSSSCCEEEEEECC
T ss_pred             cEEEECChhcCChhHhcc--cccCCceEEEEccC
Confidence            236789998887543310  00013457777776

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=92.11  E-value=0.27  Score=51.00  Aligned_cols=76  Identities=17%  Similarity=0.157  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|.++..+.++|.  .-|+++|+++ .....+......+... ..++.+|+.++..        ..+.|
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~--~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~f  134 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGA--RKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVEL--------PVEKV  134 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTC--SEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC--------SSSCE
T ss_pred             CCCEEEEEeccchHHHHHHHHCCC--CEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccC--------CCCce
Confidence            357899999999999999999986  3578999996 4444444433322222 2356788877632        12579


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+.-++
T Consensus       135 D~Iis~~~  142 (349)
T 3q7e_A          135 DIIISEWM  142 (349)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEccc
Confidence            99997543

>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=92.06  E-value=0.094  Score=41.65  Aligned_cols=31  Identities=13%  Similarity=0.395  Sum_probs=29.2

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||++++|.+|++..|....+.-||-|+.-+
T Consensus        19 MGFd~erae~Alk~Tg~~Gle~AmewL~k~~   49 (54)
T 2cos_A           19 AGCDQEMAGRALKQTGSRSIEAALEYISKMS   49 (54)
T ss_dssp             HHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence            8999999999999999999999999998865

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=92.05  E-value=0.28  Score=47.96  Aligned_cols=83  Identities=12%  Similarity=0.136  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|||+-||.|+..+.+.++   +.   .++++|+++......+.++...+... ..+..+|+.+.    +..+ ...
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~----l~~~-~~~  134 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADG---QLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS----LESL-GEC  134 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHTC-CSC
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHhc-CCC
Confidence            3578999999999999998876   43   47899999999988888776543221 22345565432    1111 112


Q ss_pred             CCccEEEEcCCCCCc
Q 006634          579 GSIDFVICQNSVPQI  593 (637)
Q Consensus       579 g~~DLVIGGpPCQ~F  593 (637)
                      +.||+|+-..++..+
T Consensus       135 ~~fD~V~~d~~~~~~  149 (248)
T 3tfw_A          135 PAFDLIFIDADKPNN  149 (248)
T ss_dssp             CCCSEEEECSCGGGH
T ss_pred             CCeEEEEECCchHHH
Confidence            479999977776543

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=92.04  E-value=0.34  Score=45.85  Aligned_cols=85  Identities=11%  Similarity=0.108  Sum_probs=55.2

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhcc--C
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKL--G  579 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~--g  579 (637)
                      .+.+|||+.||.|...+.+.++.-+-..++++|+++......+.++...+.. ...++.+|+.+.    +..+....  +
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----~~~~~~~~~~~  144 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALET----LDELLAAGEAG  144 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHH----HHHHHHTTCTT
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHH----HHHHHhcCCCC
Confidence            3568999999999999998875110125789999999998888877654321 122345565432    12221111  5


Q ss_pred             CccEEEEcCCCC
Q 006634          580 SIDFVICQNSVP  591 (637)
Q Consensus       580 ~~DLVIGGpPCQ  591 (637)
                      .||+|+.-+|..
T Consensus       145 ~~D~v~~d~~~~  156 (229)
T 2avd_A          145 TFDVAVVDADKE  156 (229)
T ss_dssp             CEEEEEECSCST
T ss_pred             CccEEEECCCHH
Confidence            799999877644

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=92.00  E-value=0.24  Score=51.18  Aligned_cols=76  Identities=14%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|.++..+.++|.  ..|++||+++.+ ...+......+. ....++.+|+.++..         .+.+
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~g~--~~V~~vD~s~~~-~~a~~~~~~~~l~~~v~~~~~d~~~~~~---------~~~~  117 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEASTMA-QHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  117 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEECSTHH-HHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CcCEEEEcCCCccHHHHHHHhCCC--CEEEEECCHHHH-HHHHHHHHHcCCCCcEEEEEcchhhCCC---------CCce
Confidence            356899999999999999999886  357899999743 444444332221 122345677776532         1469


Q ss_pred             cEEEEcCCC
Q 006634          582 DFVICQNSV  590 (637)
Q Consensus       582 DLVIGGpPC  590 (637)
                      |+|+...+.
T Consensus       118 D~Ivs~~~~  126 (348)
T 2y1w_A          118 DIIISEPMG  126 (348)
T ss_dssp             EEEEECCCB
T ss_pred             eEEEEeCch
Confidence            999987663

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=91.94  E-value=0.22  Score=39.32  Aligned_cols=40  Identities=25%  Similarity=0.131  Sum_probs=33.4

Q ss_pred             hhHHHHHHHhcCCCHHH-HHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           77 HIEKRASLLMMNFSVNE-VDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~ee-V~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ...++..|+.|||+.+. +.+|++.++-+  ++.-+|+|+...
T Consensus         9 ~~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~~   49 (54)
T 2dah_A            9 FQVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQSS   49 (54)
T ss_dssp             SHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            35688999999997765 69999999965  688899999764

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=91.90  E-value=0.21  Score=39.99  Aligned_cols=41  Identities=20%  Similarity=0.095  Sum_probs=34.3

Q ss_pred             chhhHHHHHHHhcCCC-HHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           75 GLHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        75 s~~~~~~~~lv~MGF~-~eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      .....++..|+.|||+ ++.+.+|+..++-+  ++.-+|+|+..
T Consensus        15 ~~~~~qi~~L~~MGF~d~~~~~~AL~~~~gn--ve~Ave~L~~~   56 (58)
T 1wr1_B           15 ERYEHQLRQLNDMGFFDFDRNVAALRRSGGS--VQGALDSLLNG   56 (58)
T ss_dssp             HHTHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhC
Confidence            4556789999999996 77889999999965  58889999875

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=91.89  E-value=0.17  Score=48.40  Aligned_cols=74  Identities=16%  Similarity=0.066  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+-||.|.+...|.+.|.  ..++++|+++......+......  ....+...|+.++..        ..+.||
T Consensus        93 ~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~--------~~~~fD  160 (254)
T 1xtp_A           93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL--------PPNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC--------CSSCEE
T ss_pred             CCCEEEEECCCcCHHHHHHHHhhc--CEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC--------CCCCeE
Confidence            467999999999999999888874  35789999999988887654321  122245567665431        124688


Q ss_pred             EEEEcC
Q 006634          583 FVICQN  588 (637)
Q Consensus       583 LVIGGp  588 (637)
                      +|+...
T Consensus       161 ~v~~~~  166 (254)
T 1xtp_A          161 LIVIQW  166 (254)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            888543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=91.69  E-value=0.14  Score=48.80  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=55.6

Q ss_pred             CCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--
Q 006634          504 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--  577 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~--  577 (637)
                      +.+||||.||.|+.++.+.++   |.   .|+++|+++......+.++...+... ..++.+|+.++-    +.+...  
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l----~~~~~~~~  131 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGA---RLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLI----PQLKKKYD  131 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHG----GGTTTTSC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCC---EEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHH----HHHHHhcC
Confidence            468999999999999998874   33   47899999999998888776543211 224456654321    111111  


Q ss_pred             cCCccEEEEcCCCCCc
Q 006634          578 LGSIDFVICQNSVPQI  593 (637)
Q Consensus       578 ~g~~DLVIGGpPCQ~F  593 (637)
                      .+.||+|+-..++..+
T Consensus       132 ~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A          132 VDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             CCCCSEEEECSCGGGH
T ss_pred             CCceEEEEEcCCcccc
Confidence            1579999977766554

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=91.64  E-value=0.29  Score=45.56  Aligned_cols=75  Identities=24%  Similarity=0.158  Sum_probs=50.9

Q ss_pred             ccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhh
Q 006634          497 LKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIH  576 (637)
Q Consensus       497 LK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~  576 (637)
                      |+.+.+.+.+|||+-||.|.+...+   |+  ..++++|+++.+.+..+...     ....+...|+.++..        
T Consensus        30 l~~~~~~~~~vLdiG~G~G~~~~~l---~~--~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------   91 (211)
T 2gs9_A           30 LKGLLPPGESLLEVGAGTGYWLRRL---PY--PQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF--------   91 (211)
T ss_dssp             HHTTCCCCSEEEEETCTTCHHHHHC---CC--SEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------
T ss_pred             HHHhcCCCCeEEEECCCCCHhHHhC---CC--CeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------
Confidence            3344446789999999999988776   65  24789999999887776543     122345667766531        


Q ss_pred             ccCCccEEEEcCC
Q 006634          577 KLGSIDFVICQNS  589 (637)
Q Consensus       577 ~~g~~DLVIGGpP  589 (637)
                      ..+.||+|+....
T Consensus        92 ~~~~fD~v~~~~~  104 (211)
T 2gs9_A           92 PGESFDVVLLFTT  104 (211)
T ss_dssp             CSSCEEEEEEESC
T ss_pred             CCCcEEEEEEcCh
Confidence            1246899986543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=91.55  E-value=0.15  Score=44.94  Aligned_cols=80  Identities=15%  Similarity=0.102  Sum_probs=51.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccCh-hhHHHhhhccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTT-KKFESLIHKLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~-~~Ie~l~~~~g  579 (637)
                      ..+.+|||+-||.|++...+.+. |-. ..++++|+++ ....          ....+...|+.+... +.+.... ..+
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~-~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~-~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERV-GDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHH-TTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCC-CeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccC-CCC
Confidence            34578999999999999988876 432 2468999998 4321          122245667765431 0111111 125


Q ss_pred             CccEEEEcCCCCCcC
Q 006634          580 SIDFVICQNSVPQIP  594 (637)
Q Consensus       580 ~~DLVIGGpPCQ~FS  594 (637)
                      .||+|+..+|+..+.
T Consensus        88 ~~D~i~~~~~~~~~~  102 (180)
T 1ej0_A           88 KVQVVMSDMAPNMSG  102 (180)
T ss_dssp             CEEEEEECCCCCCCS
T ss_pred             ceeEEEECCCccccC
Confidence            799999999987654

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=91.55  E-value=0.33  Score=50.17  Aligned_cols=75  Identities=16%  Similarity=0.121  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||+-||.|.++..+.++|.  ..|+++|+++ .....+......+. ....++.+|+.++..        ..+.+
T Consensus        64 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~  132 (340)
T 2fyt_A           64 KDKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL--------PVEKV  132 (340)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SCSCE
T ss_pred             CCCEEEEeeccCcHHHHHHHHcCC--CEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC--------CCCcE
Confidence            356899999999999999999985  3588999997 55555555443322 122345677776531        12479


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+...
T Consensus       133 D~Ivs~~  139 (340)
T 2fyt_A          133 DVIISEW  139 (340)
T ss_dssp             EEEEECC
T ss_pred             EEEEEcC
Confidence            9999654

>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A

Probab=91.52  E-value=0.095  Score=40.16  Aligned_cols=37  Identities=24%  Similarity=0.185  Sum_probs=29.7

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  188 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A  188 (637)
                      .+++..|+.|||++..|..|+..||.+  ++.=++.++.
T Consensus         5 ~eaI~rL~~mGF~~~~a~~Al~a~~~n--~e~A~~~Lf~   41 (47)
T 1dv0_A            5 KEAIERLKALGFPESLVIQAYFACEKN--ENLAANFLLS   41 (47)
T ss_dssp             HHHHTTTTTTTCCHHHHHHHHTTTTSC--HHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHh
Confidence            467889999999999999999999965  4444666654

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=91.51  E-value=0.38  Score=48.18  Aligned_cols=72  Identities=15%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+-||.|++...+.+. |.   .++++|+++......+......+.. ...+..+|+.++.           +.
T Consensus        90 ~~~~vLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~  155 (318)
T 2fk8_A           90 PGMTLLDIGCGWGTTMRRAVERFDV---NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-----------EP  155 (318)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-----------CC
T ss_pred             CcCEEEEEcccchHHHHHHHHHCCC---EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-----------CC
Confidence            4679999999999999888876 86   4789999999988877665432211 1224456665542           35


Q ss_pred             ccEEEEcC
Q 006634          581 IDFVICQN  588 (637)
Q Consensus       581 ~DLVIGGp  588 (637)
                      ||+|+...
T Consensus       156 fD~v~~~~  163 (318)
T 2fk8_A          156 VDRIVSIE  163 (318)
T ss_dssp             CSEEEEES
T ss_pred             cCEEEEeC
Confidence            77777553

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=91.48  E-value=0.44  Score=43.97  Aligned_cols=75  Identities=15%  Similarity=0.208  Sum_probs=53.6

Q ss_pred             cccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCccE
Q 006634          506 TMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       506 ~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +|||+-||.|.+...+.+. |.   .++++|+++......+......+.. ...+...|+.++.-        ..+.+|+
T Consensus        46 ~vLdiG~G~G~~~~~l~~~~~~---~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~~D~  114 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQSDF---SIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI--------EDNYADL  114 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHHSEE---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS--------CTTCEEE
T ss_pred             EEEEECCCCCHHHHHHHHcCCC---eEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC--------CcccccE
Confidence            9999999999999999887 42   5789999999988887765543322 22345677776541        1247999


Q ss_pred             EEEcCCCC
Q 006634          584 VICQNSVP  591 (637)
Q Consensus       584 VIGGpPCQ  591 (637)
                      |+......
T Consensus       115 v~~~~~l~  122 (219)
T 3dlc_A          115 IVSRGSVF  122 (219)
T ss_dssp             EEEESCGG
T ss_pred             EEECchHh
Confidence            99765443

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=91.45  E-value=0.37  Score=40.49  Aligned_cols=42  Identities=17%  Similarity=0.179  Sum_probs=34.8

Q ss_pred             chhhHHHHHHHhcCCC-HHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           75 GLHIEKRASLLMMNFS-VNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        75 s~~~~~~~~lv~MGF~-~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      .....++..|+.|||. ++.+.+|+..++-+  ++.-+|+|+...
T Consensus        27 ~~ye~qi~qL~eMGF~dr~~~~~AL~~t~Gn--ve~Ave~L~~~~   69 (74)
T 1vej_A           27 GRYQQELEELKALGFANRDANLQALVATDGD--IHAAIEMLLGAS   69 (74)
T ss_dssp             TTSHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHhCCC--HHHHHHHHHhCC
Confidence            3456789999999995 78889999999865  588899999763

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=91.43  E-value=0.39  Score=47.69  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc--CCCCCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS--GQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t--n~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+-||.|.+...|.+.--+...++++|+++......+......  ......++..|+.++....-..  ...+.
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~--~~~~~  113 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADS--VDKQK  113 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTT--TTSSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCcccccc--ccCCC
Confidence            5789999999999999998852101135789999999888777655432  1223335678887765211000  01257


Q ss_pred             ccEEEEcCC
Q 006634          581 IDFVICQNS  589 (637)
Q Consensus       581 ~DLVIGGpP  589 (637)
                      ||+|+....
T Consensus       114 fD~V~~~~~  122 (299)
T 3g5t_A          114 IDMITAVEC  122 (299)
T ss_dssp             EEEEEEESC
T ss_pred             eeEEeHhhH
Confidence            999987643

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=91.33  E-value=0.17  Score=50.38  Aligned_cols=44  Identities=16%  Similarity=0.196  Sum_probs=37.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .+-.|||+|||.|...++..++|-+   ++++|+++.+..+.+..+.
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~gr~---~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKLGRN---FIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHH
Confidence            4567999999999999999999964   6789999999887776543

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=91.22  E-value=0.45  Score=46.70  Aligned_cols=72  Identities=15%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             CCCCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +.+.+|||+-||.|++...+. +.|.   .++++|+++......+......+.. ...+...|+.++.           +
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-----------~  128 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV---NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-----------E  128 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-----------C
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC---EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-----------C
Confidence            346799999999999998887 6675   4789999999888777655432211 2224456665442           3


Q ss_pred             CccEEEEc
Q 006634          580 SIDFVICQ  587 (637)
Q Consensus       580 ~~DLVIGG  587 (637)
                      .||+|+..
T Consensus       129 ~fD~v~~~  136 (287)
T 1kpg_A          129 PVDRIVSI  136 (287)
T ss_dssp             CCSEEEEE
T ss_pred             CeeEEEEe
Confidence            67887754

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=91.09  E-value=0.41  Score=49.11  Aligned_cols=76  Identities=18%  Similarity=0.196  Sum_probs=51.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|.++..+.++|.  ..|++||+++ .....+......+... ..++.+|+.++..        ..+.+
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~--~~v~~vD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~~~  106 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGA--KHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL--------PFPKV  106 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCC--SEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC--------SSSCE
T ss_pred             CCCEEEEecCccHHHHHHHHHCCC--CEEEEEChHH-HHHHHHHHHHHcCCCCCEEEEECchhhccC--------CCCcc
Confidence            356899999999999999999986  3588999995 4455555443322211 2245677776531        12479


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+..++
T Consensus       107 D~Ivs~~~  114 (328)
T 1g6q_1          107 DIIISEWM  114 (328)
T ss_dssp             EEEEECCC
T ss_pred             cEEEEeCc
Confidence            99997654

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=91.01  E-value=0.18  Score=56.09  Aligned_cols=80  Identities=18%  Similarity=0.079  Sum_probs=49.1

Q ss_pred             CcccccCCCCChHHHHHHHc--------CC------ceeeEEEeecCHHHHHHHHHHhhhcCCCCCc-cccccccccChh
Q 006634          505 LTMLSVFSGIGGAEVTLHRL--------GI------KLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTK  569 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~a--------Gi------~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~  569 (637)
                      .+|+|.+||.|||-+.+.+.        +.      .-..++++|+++.+.++.+.+..-++....+ +..+|.-.... 
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~-  324 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQ-  324 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCS-
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCcc-
Confidence            39999999999998775321        10      0135789999999988877654333222211 13444321110 


Q ss_pred             hHHHhhhccCCccEEEEcCCCC
Q 006634          570 KFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       570 ~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                            .....||+|++-||=.
T Consensus       325 ------~~~~~fD~Iv~NPPf~  340 (544)
T 3khk_A          325 ------HPDLRADFVMTNPPFN  340 (544)
T ss_dssp             ------CTTCCEEEEEECCCSS
T ss_pred             ------cccccccEEEECCCcC
Confidence                  1125799999999954

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=90.96  E-value=0.32  Score=45.27  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=35.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  546 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~  546 (637)
                      ..+.+|||+-||.|.+...+.+.|.   .++++|+++......+.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~---~~~~~D~~~~~~~~~~~   72 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENGT---RVSGIEAFPEAAEQAKE   72 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTTC---EEEEEESSHHHHHHHHT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcCC---eEEEEeCCHHHHHHHHH
Confidence            4568999999999999999998874   47899999998776653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=90.92  E-value=0.42  Score=47.87  Aligned_cols=52  Identities=13%  Similarity=0.173  Sum_probs=39.4

Q ss_pred             hhccccccCCCCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHH
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRW  547 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~  547 (637)
                      .++.|......+.+|||+-||.|.+.+.+.+.  +.   .+++|||++......+.+
T Consensus        36 ~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~---~v~gvDis~~~i~~A~~~   89 (292)
T 3g07_A           36 RLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPS---RMVGLDIDSRLIHSARQN   89 (292)
T ss_dssp             GGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCS---EEEEEESCHHHHHHHHHT
T ss_pred             HHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCC---EEEEECCCHHHHHHHHHH
Confidence            34455544345789999999999999998876  33   578999999987776654

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=90.90  E-value=0.61  Score=43.11  Aligned_cols=74  Identities=19%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             CCCcccccCCCCChHH-HHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAE-VTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGls-lGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|.+. ..+.+.|.   .++++|+++.+.+..+......+ ....+...|+.++..        ..+.+
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~---~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~--------~~~~f   90 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGY---KTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF--------KDESM   90 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTC---EEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS--------CTTCE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC--------CCCce
Confidence            4679999999998873 44566776   36899999999888776654332 223345677766531        12468


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+...
T Consensus        91 D~v~~~~   97 (209)
T 2p8j_A           91 SFVYSYG   97 (209)
T ss_dssp             EEEEECS
T ss_pred             eEEEEcC
Confidence            8888653

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=90.71  E-value=0.025  Score=55.43  Aligned_cols=77  Identities=14%  Similarity=0.040  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||+.||.|+++..+.+.|.   -++++|+++......+....  ......++.+|+.++...       ..+.| 
T Consensus        29 ~~~~VLDiG~G~G~~~~~l~~~~~---~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~-------~~~~f-   95 (245)
T 1yub_A           29 ETDTVYEIGTGKGHLTTKLAKISK---QVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFP-------NKQRY-   95 (245)
T ss_dssp             SSEEEEECSCCCSSCSHHHHHHSS---EEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCC-------CSSEE-
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhCC---eEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcc-------cCCCc-
Confidence            467899999999999999988883   47899999987655443221  111223556787766421       01346 


Q ss_pred             EEEEcCCCCC
Q 006634          583 FVICQNSVPQ  592 (637)
Q Consensus       583 LVIGGpPCQ~  592 (637)
                      +|++-+|...
T Consensus        96 ~vv~n~Py~~  105 (245)
T 1yub_A           96 KIVGNIPYHL  105 (245)
T ss_dssp             EEEEECCSSS
T ss_pred             EEEEeCCccc
Confidence            7888888654

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=90.65  E-value=0.48  Score=45.38  Aligned_cols=72  Identities=25%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+=||.|.+...|.+. |.   .++++|+++......+......+.. ...+..+|+.++..         .+.
T Consensus        36 ~~~~VLDiGcG~G~~~~~la~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~  103 (256)
T 1nkv_A           36 PGTRILDLGSGSGEMLCTWARDHGI---TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA---------NEK  103 (256)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHTCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC---------SSC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc---------CCC
Confidence            4679999999999999888765 64   3689999999888777665433211 12245667765532         135


Q ss_pred             ccEEEE
Q 006634          581 IDFVIC  586 (637)
Q Consensus       581 ~DLVIG  586 (637)
                      ||+|+.
T Consensus       104 fD~V~~  109 (256)
T 1nkv_A          104 CDVAAC  109 (256)
T ss_dssp             EEEEEE
T ss_pred             CCEEEE
Confidence            777775

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=90.45  E-value=0.89  Score=53.23  Aligned_cols=99  Identities=15%  Similarity=0.130  Sum_probs=66.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHhhhhcCCCCCCCcccCcCCCCCCCCCCCccCCCCCCCCCCccccchhhHH
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYNALQESNSQSSDSLDTLFGDKDANSPPEISTMVQPKEEPNVMDEGLHIEK   80 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltysal~~~~s~ss~s~~~~~~d~~~~~~s~~~~~~~~~~e~~~~~~s~~~~~   80 (637)
                      |||++.-..||+...|..+.+.-++-|+..-.            |.++++........-+..   ...   .......+.
T Consensus       662 mGf~~~~~~kal~~t~n~~~e~a~~wl~~hmd------------d~di~~p~~~~~~~~~~s---~~~---~~~~~~~e~  723 (854)
T 3ihp_A          662 MGFPMDACRKAVYYTGNSGAEAAMNWVMSHMD------------DPDFANPLILPGSSGPGS---TSA---AADPPPEDC  723 (854)
T ss_dssp             HTCCHHHHHHHHHHTTSCCHHHHHHHHHHHTT------------SCGGGSCCCCC--------------------CCHHH
T ss_pred             cCCCHHHHHHHHhhcCCCchHHHhHHHhhccC------------cccccccccccccccccc---ccc---ccCCCCHHH
Confidence            89999999999999999999999999986631            111222111100000000   000   001234567


Q ss_pred             HHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           81 RASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        81 ~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      +..|..|||+.+.+.+|+++.+.+  ++.-+|.|++...
T Consensus       724 i~~l~~mGf~~~~a~~aL~~t~~~--~eraidwlfs~~d  760 (854)
T 3ihp_A          724 VTTIVSMGFSRDQALKALRATNNS--LERAVDWIFSHID  760 (854)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHhhcCc--HHHHHHhhhcCcc
Confidence            889999999999999999999874  5888999998644

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=90.37  E-value=0.29  Score=48.51  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=53.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      ..+.+|||+-||.|.+...|.+.   |.   .++++|+++......+......+ ....+..+|+.++..         .
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~-~~v~~~~~d~~~~~~---------~   87 (284)
T 3gu3_A           21 TKPVHIVDYGCGYGYLGLVLMPLLPEGS---KYTGIDSGETLLAEARELFRLLP-YDSEFLEGDATEIEL---------N   87 (284)
T ss_dssp             CSCCEEEEETCTTTHHHHHHTTTSCTTC---EEEEEESCHHHHHHHHHHHHSSS-SEEEEEESCTTTCCC---------S
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHhcC-CceEEEEcchhhcCc---------C
Confidence            35689999999999999998776   43   46899999998887776554321 122346678776542         1


Q ss_pred             CCccEEEEcCC
Q 006634          579 GSIDFVICQNS  589 (637)
Q Consensus       579 g~~DLVIGGpP  589 (637)
                      +.||+|+....
T Consensus        88 ~~fD~v~~~~~   98 (284)
T 3gu3_A           88 DKYDIAICHAF   98 (284)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEEECCh
Confidence            46899987553

>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=90.32  E-value=0.21  Score=40.53  Aligned_cols=39  Identities=26%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      +++..|+.|||++++|..|+-.||- ..++.=++.|+.-+
T Consensus        21 ~~i~~L~~MGF~~~~a~~AL~~t~~-~nve~A~ewL~~~~   59 (64)
T 2cpw_A           21 SALDVLLSMGFPRARAQKALASTGG-RSVQTACDWLFSHS   59 (64)
T ss_dssp             CHHHHHHHHTCCHHHHHHHHHHTTT-SCHHHHHHHHHSCC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCC-CCHHHHHHHHHhCC
Confidence            5677999999999999999999996 24777788887644

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=90.31  E-value=0.35  Score=51.54  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=47.6

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      +-+|||+=||.|-+++-..++|..  -|+|||.++.+.. .+..-...+... ..++.+|+.++..         ...+|
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~--~V~ave~s~~~~~-a~~~~~~n~~~~~i~~i~~~~~~~~l---------pe~~D  151 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGAR--RVYAVEASAIWQQ-AREVVRFNGLEDRVHVLPGPVETVEL---------PEQVD  151 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHH-HHHHHHHTTCTTTEEEEESCTTTCCC---------SSCEE
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCC--EEEEEeChHHHHH-HHHHHHHcCCCceEEEEeeeeeeecC---------Ccccc
Confidence            447999999999999999999974  5899999975432 232222222212 2245678877642         24799


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +||.
T Consensus       152 vivs  155 (376)
T 4hc4_A          152 AIVS  155 (376)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9984

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=90.24  E-value=0.28  Score=50.25  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=54.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +++-+||+|.||.|++...+.+.+ +...+++||+|+...+..+.++...    +.....++.+|..+.    +.   ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~----l~---~~  165 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEF----MK---QN  165 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHH----HH---TC
T ss_pred             CCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHH----Hh---hC
Confidence            456799999999999999887764 2346889999999999888876531    111222445665431    11   12


Q ss_pred             cCCccEEEEcCCC
Q 006634          578 LGSIDFVICQNSV  590 (637)
Q Consensus       578 ~g~~DLVIGGpPC  590 (637)
                      .+.||+|+..+|.
T Consensus       166 ~~~fD~Ii~d~~~  178 (304)
T 2o07_A          166 QDAFDVIITDSSD  178 (304)
T ss_dssp             SSCEEEEEEECC-
T ss_pred             CCCceEEEECCCC
Confidence            3579999987664

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=90.20  E-value=0.24  Score=47.98  Aligned_cols=82  Identities=12%  Similarity=0.106  Sum_probs=53.7

Q ss_pred             CCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-C-CccccccccccChhhHHHhhhccCC
Q 006634          504 GLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-G-ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g-~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      +.+|||+-||.|..++.|.++ +-. -.+++||+++...+..+.++...+.. . ..++.+|..++-.    .+  ..+.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~-~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~----~~--~~~~  129 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADN-TTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS----RL--ANDS  129 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTT-SEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG----GS--CTTC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCC-CEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH----Hh--cCCC
Confidence            358999999999999988764 211 24789999999999999888764322 1 1234455443211    10  1267


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      ||+|+-..+...
T Consensus       130 fD~V~~d~~~~~  141 (221)
T 3dr5_A          130 YQLVFGQVSPMD  141 (221)
T ss_dssp             EEEEEECCCTTT
T ss_pred             cCeEEEcCcHHH
Confidence            999987665544

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=90.16  E-value=0.39  Score=52.44  Aligned_cols=75  Identities=15%  Similarity=0.151  Sum_probs=51.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCC-CCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQ-TGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|.+.+.+.++|.  .-|+++|+++ .....+......+. ....++.+|+.++..         .+.|
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~~~--~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~---------~~~f  225 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQAGA--RKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSL---------PEQV  225 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHTTC--SEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCC---------SSCE
T ss_pred             CCCEEEEecCcccHHHHHHHHcCC--CEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCcc---------CCCe
Confidence            357899999999999999988875  3578999998 54555544433221 122355677766531         1479


Q ss_pred             cEEEEcCC
Q 006634          582 DFVICQNS  589 (637)
Q Consensus       582 DLVIGGpP  589 (637)
                      |+|+..+|
T Consensus       226 D~Ivs~~~  233 (480)
T 3b3j_A          226 DIIISEPM  233 (480)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCc
Confidence            99997554

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=90.10  E-value=0.49  Score=48.20  Aligned_cols=83  Identities=24%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc------CC-----CCCccccccccccChhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS------GQ-----TGELVQIEDIQALTTKK  570 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t------n~-----~g~l~~~~DI~~Lt~~~  570 (637)
                      .+.+|||+.||.|.++..+.++ |-. ..++++|+++.+....+.+....      |+     ....+..+|+.++.. .
T Consensus       105 ~g~~VLDiG~G~G~~~~~la~~~g~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~-~  182 (336)
T 2b25_A          105 PGDTVLEAGSGSGGMSLFLSKAVGSQ-GRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATE-D  182 (336)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC---
T ss_pred             CCCEEEEeCCCcCHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHccc-c
Confidence            4679999999999999998886 532 24789999999888887765431      11     112245677766531 1


Q ss_pred             HHHhhhccCCccEEEEcCCCCC
Q 006634          571 FESLIHKLGSIDFVICQNSVPQ  592 (637)
Q Consensus       571 Ie~l~~~~g~~DLVIGGpPCQ~  592 (637)
                      +.     .+.||+|+...|+..
T Consensus       183 ~~-----~~~fD~V~~~~~~~~  199 (336)
T 2b25_A          183 IK-----SLTFDAVALDMLNPH  199 (336)
T ss_dssp             ----------EEEEEECSSSTT
T ss_pred             cC-----CCCeeEEEECCCCHH
Confidence            11     136999998766543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=90.05  E-value=0.5  Score=45.21  Aligned_cols=74  Identities=9%  Similarity=0.023  Sum_probs=52.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+-||.|.+...+.+.  |.   .++++|+++......+..     .....+...|+.++..         .+.
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~---------~~~   95 (259)
T 2p35_A           33 RVLNGYDLGCGPGNSTELLTDRYGVN---VITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKP---------AQK   95 (259)
T ss_dssp             CCSSEEEETCTTTHHHHHHHHHHCTT---SEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCC---------SSC
T ss_pred             CCCEEEEecCcCCHHHHHHHHhCCCC---EEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCc---------cCC
Confidence            4578999999999999998877  54   478999999988777653     1223355677766541         246


Q ss_pred             ccEEEEcCCCCCc
Q 006634          581 IDFVICQNSVPQI  593 (637)
Q Consensus       581 ~DLVIGGpPCQ~F  593 (637)
                      ||+|+.....+-+
T Consensus        96 fD~v~~~~~l~~~  108 (259)
T 2p35_A           96 ADLLYANAVFQWV  108 (259)
T ss_dssp             EEEEEEESCGGGS
T ss_pred             cCEEEEeCchhhC
Confidence            8888876544433

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=89.87  E-value=0.67  Score=42.98  Aligned_cols=74  Identities=14%  Similarity=0.113  Sum_probs=49.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc-CCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL-GSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~-g~~D  582 (637)
                      +.+|||+-||.|.+...|.+.|..   ++++|+++......+..      ....+...|+.++...     .... +.||
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~~~~---v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~-----~~~~~~~fD  118 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADRGIE---AVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEA-----KVPVGKDYD  118 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTT-----CSCCCCCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHCCCE---EEEEcCCHHHHHHHHHh------cccccchhhHHhhccc-----ccccCCCcc
Confidence            489999999999999999999873   68999999987776642      1122344555444111     0111 3488


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+......
T Consensus       119 ~v~~~~~l~  127 (227)
T 3e8s_A          119 LICANFALL  127 (227)
T ss_dssp             EEEEESCCC
T ss_pred             EEEECchhh
Confidence            887765443

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=89.69  E-value=0.32  Score=49.04  Aligned_cols=81  Identities=22%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn----~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++...+    .+...++.+|+.+.    +.   ..
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  148 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  148 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHH----HH---hC
Confidence            456799999999999998887763 23468899999999998888764321    11222445555432    11   11


Q ss_pred             cCCccEEEEcCCC
Q 006634          578 LGSIDFVICQNSV  590 (637)
Q Consensus       578 ~g~~DLVIGGpPC  590 (637)
                      .+.+|+|+..++.
T Consensus       149 ~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          149 TNTYDVIIVDSSD  161 (283)
T ss_dssp             CSCEEEEEEECCC
T ss_pred             CCCceEEEEcCCC
Confidence            3579999986543

>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1

Probab=89.65  E-value=0.36  Score=39.17  Aligned_cols=31  Identities=23%  Similarity=0.481  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||+++.+.||+...|..|.+.-+|.||...
T Consensus        19 MGF~~~~a~~AL~~t~~~nve~A~ewLl~~~   49 (64)
T 1whc_A           19 MGFPRGRAEKALALTGNQGIEAAMDWLMEHE   49 (64)
T ss_dssp             TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence            9999999999999999889999999999874

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=89.44  E-value=0.86  Score=48.25  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=57.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcc--ccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELV--QIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~--~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||++||.||=+..+-.++-. ..++|+|+++.-.+.++.+........ +.  ..-.|...+...+...  ..+.
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~-~~l~A~D~~~~R~~~l~~~l~r~~~~~-~~~~~~v~v~~~D~~~~~~~--~~~~  223 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCC-RNLAANDLSPSRIARLQKILHSYVPEE-IRDGNQVRVTSWDGRKWGEL--EGDT  223 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCE-EEEEEECSCHHHHHHHHHHHHHHSCTT-TTTSSSEEEECCCGGGHHHH--STTC
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCC-CcEEEEcCCHHHHHHHHHHHHHhhhhh-hccCCceEEEeCchhhcchh--cccc
Confidence            3678999999999999998888743 458899999998888877654331110 00  0112333333333221  2357


Q ss_pred             ccEEEEcCCCCCc
Q 006634          581 IDFVICQNSVPQI  593 (637)
Q Consensus       581 ~DLVIGGpPCQ~F  593 (637)
                      ||.|+-=+||.+-
T Consensus       224 fD~VLlDaPCSg~  236 (359)
T 4fzv_A          224 YDRVLVDVPCTTD  236 (359)
T ss_dssp             EEEEEEECCCCCH
T ss_pred             CCEEEECCccCCC
Confidence            9999999999874

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=89.41  E-value=0.19  Score=50.19  Aligned_cols=76  Identities=17%  Similarity=0.142  Sum_probs=52.4

Q ss_pred             ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634          495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      ..|..+.+.+-+||||=||.|.++..|.+.|.+   |++||+++...+..+      .+++..+..+|+.++.-      
T Consensus        31 ~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~~---v~gvD~s~~ml~~a~------~~~~v~~~~~~~e~~~~------   95 (257)
T 4hg2_A           31 RWLGEVAPARGDALDCGCGSGQASLGLAEFFER---VHAVDPGEAQIRQAL------RHPRVTYAVAPAEDTGL------   95 (257)
T ss_dssp             HHHHHHSSCSSEEEEESCTTTTTHHHHHTTCSE---EEEEESCHHHHHTCC------CCTTEEEEECCTTCCCC------
T ss_pred             HHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCCE---EEEEeCcHHhhhhhh------hcCCceeehhhhhhhcc------
Confidence            334444566678999999999999999999863   689999998754332      12233345667665532      


Q ss_pred             hhccCCccEEEEc
Q 006634          575 IHKLGSIDFVICQ  587 (637)
Q Consensus       575 ~~~~g~~DLVIGG  587 (637)
                        ..+.||+|+.+
T Consensus        96 --~~~sfD~v~~~  106 (257)
T 4hg2_A           96 --PPASVDVAIAA  106 (257)
T ss_dssp             --CSSCEEEEEEC
T ss_pred             --cCCcccEEEEe
Confidence              12579999874

>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}

Probab=89.39  E-value=0.55  Score=37.43  Aligned_cols=39  Identities=10%  Similarity=0.082  Sum_probs=30.6

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  116 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a  116 (637)
                      ..+..+..|+.|||+.+.|.+|+.....|-  +.-.++|+.
T Consensus         6 p~e~~Ia~L~smGfsr~da~~AL~ia~Ndv--~~AtNiLlE   44 (56)
T 2juj_A            6 QLSSEIENLMSQGYSYQDIQKALVIAQNNI--EMAKNILRE   44 (56)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHTTTCS--HHHHHHHHH
T ss_pred             CChHHHHHHHHcCCCHHHHHHHHHHhcccH--HHHHHHHHH
Confidence            345689999999999999999999988764  455555553

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=89.13  E-value=0.76  Score=43.93  Aligned_cols=44  Identities=20%  Similarity=0.267  Sum_probs=36.6

Q ss_pred             ccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHH
Q 006634          499 SMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILK  545 (637)
Q Consensus       499 ~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r  545 (637)
                      +.++.+.+|||+-||.|.+...|.+.|.+   ++++|+++......+
T Consensus        37 ~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~gvD~s~~~~~~a~   80 (240)
T 3dli_A           37 PYFKGCRRVLDIGCGRGEFLELCKEEGIE---SIGVDINEDMIKFCE   80 (240)
T ss_dssp             GGTTTCSCEEEETCTTTHHHHHHHHHTCC---EEEECSCHHHHHHHH
T ss_pred             hhhcCCCeEEEEeCCCCHHHHHHHhCCCc---EEEEECCHHHHHHHH
Confidence            34456789999999999999999998874   589999999876654

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=89.08  E-value=0.84  Score=44.79  Aligned_cols=76  Identities=20%  Similarity=0.241  Sum_probs=49.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC----CCccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT----GELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~----g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|||+-||.|.+...|.+.|.   .++++|+++......+.........    ...+..+|+.++..+    + ...
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----~-~~~  128 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEGF---SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD----V-PAG  128 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH----S-CCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC---eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc----c-ccC
Confidence            457899999999999999999987   4689999999887776533211110    111234555443211    0 123


Q ss_pred             CCccEEEE
Q 006634          579 GSIDFVIC  586 (637)
Q Consensus       579 g~~DLVIG  586 (637)
                      +.||+|+.
T Consensus       129 ~~fD~V~~  136 (293)
T 3thr_A          129 DGFDAVIC  136 (293)
T ss_dssp             TCEEEEEE
T ss_pred             CCeEEEEE
Confidence            57999995

>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}

Probab=89.07  E-value=0.73  Score=35.44  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=29.4

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  115 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~  115 (637)
                      -+..+..|+.|||+.+.|.+|+.....+  |+.-.+.|+
T Consensus         4 ~e~~I~~L~s~Gf~~~~~~rAL~ia~Nn--ie~A~nIL~   40 (46)
T 2oo9_A            4 LSSEIENLMSQGYSYQDIQKALVIAQNN--IEMAKNILR   40 (46)
T ss_dssp             HHHHHHHHHHTTBCHHHHHHHHHHTTTC--HHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHhhcc--HHHHHHHHH
Confidence            3567899999999999999999998875  455555554

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=89.03  E-value=0.46  Score=43.58  Aligned_cols=77  Identities=12%  Similarity=0.090  Sum_probs=46.3

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCc-------eeeEEEeecCHHHHHHHHHHhhhcCCCCCccc-cccccccChh-hH
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIK-------LKGVISIETSETNRRILKRWWESSGQTGELVQ-IEDIQALTTK-KF  571 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~-------~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~-~~DI~~Lt~~-~I  571 (637)
                      +.+.+||||-||.|+++..+.+. |-.       -..++++|+++...           .....+. ..|+.+.... .+
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-----------~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-----------LEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-----------CTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-----------CCCCeEEEeccCCCHHHHHHH
Confidence            34679999999999999988776 421       01478999998520           1122244 6677654321 11


Q ss_pred             HHhhhccCCccEEEEcCCC
Q 006634          572 ESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       572 e~l~~~~g~~DLVIGGpPC  590 (637)
                      .... ..+.||+|+...++
T Consensus        90 ~~~~-~~~~fD~V~~~~~~  107 (196)
T 2nyu_A           90 LEVL-PGRRADVILSDMAP  107 (196)
T ss_dssp             HHHS-GGGCEEEEEECCCC
T ss_pred             HHhc-CCCCCcEEEeCCCC
Confidence            1111 11379999976543

>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}

Probab=89.00  E-value=0.38  Score=37.57  Aligned_cols=39  Identities=23%  Similarity=0.314  Sum_probs=31.8

Q ss_pred             hhhHHHHHhcCC-CHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          150 MEITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       150 ~~k~~~L~~MGf-seeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      .+++..|+.||| +++.+..|+..||-+  ++.-++.++..+
T Consensus        12 ~~~l~~L~~MGF~~~~~~~~AL~~t~gn--ve~Ave~L~~~~   51 (53)
T 2knz_A           12 QQQLEQLNSMGFINREANLQALIATGGD--INAAIERLLGSQ   51 (53)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHHcC
Confidence            367779999999 899999999999985  666677777643

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=88.99  E-value=0.67  Score=44.55  Aligned_cols=49  Identities=10%  Similarity=0.237  Sum_probs=37.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  551 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t  551 (637)
                      .+.+|||+-||.|.....+.+..=+-..++++|+++......+.++...
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~  108 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN  108 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence            3568999999999999988876210124789999999988888877543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=88.85  E-value=0.45  Score=48.71  Aligned_cols=81  Identities=17%  Similarity=0.180  Sum_probs=55.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC-----CCCCccccccccccChhhHHHhhh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG-----QTGELVQIEDIQALTTKKFESLIH  576 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn-----~~g~l~~~~DI~~Lt~~~Ie~l~~  576 (637)
                      +.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++...+     .+...++.+|+.+.    +..   
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~----l~~---  147 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAY----LER---  147 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHH----HHH---
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHH----HHh---
Confidence            456799999999999998887752 22457899999999988888765311     12223455666542    111   


Q ss_pred             ccCCccEEEEcCCC
Q 006634          577 KLGSIDFVICQNSV  590 (637)
Q Consensus       577 ~~g~~DLVIGGpPC  590 (637)
                      ..+.+|+|+..+|.
T Consensus       148 ~~~~fD~Ii~d~~~  161 (314)
T 1uir_A          148 TEERYDVVIIDLTD  161 (314)
T ss_dssp             CCCCEEEEEEECCC
T ss_pred             cCCCccEEEECCCC
Confidence            23579999987654

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=88.80  E-value=0.77  Score=45.24  Aligned_cols=75  Identities=19%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +.+.+|||+-||.|.+...|.+. |.   .++++|+++......+......+.. ...+..+|+.++.-        ..+
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~  149 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRKFGV---SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------EDN  149 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CTT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC--------CCC
Confidence            35679999999999999988876 76   3789999999877776654332211 12245667665531        113


Q ss_pred             CccEEEEc
Q 006634          580 SIDFVICQ  587 (637)
Q Consensus       580 ~~DLVIGG  587 (637)
                      .||+|+..
T Consensus       150 ~fD~v~~~  157 (297)
T 2o57_A          150 SYDFIWSQ  157 (297)
T ss_dssp             CEEEEEEE
T ss_pred             CEeEEEec
Confidence            57777754

>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=88.77  E-value=0.45  Score=38.71  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=29.1

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||+++.+.||+...|-.|.+.=+|-||...
T Consensus        19 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h~   49 (64)
T 2crn_A           19 MGFPVHTALKALAATGRKTAEEALAWLHDHC   49 (64)
T ss_dssp             TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            9999999999999999889999999999773

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=88.73  E-value=0.37  Score=49.64  Aligned_cols=80  Identities=23%  Similarity=0.242  Sum_probs=53.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +.+.+||++-||.|++...+.+.. +...+++||+|+.+.+..+.++...    +.+...++.+|+.+.    +.   ..
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~----l~---~~  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKF----LE---NV  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHH----Hh---hc
Confidence            356799999999999998887752 1245789999999999888876431    011122345555431    11   11


Q ss_pred             cCCccEEEEcCC
Q 006634          578 LGSIDFVICQNS  589 (637)
Q Consensus       578 ~g~~DLVIGGpP  589 (637)
                      .+.||+|+..++
T Consensus       187 ~~~fDvIi~d~~  198 (321)
T 2pt6_A          187 TNTYDVIIVDSS  198 (321)
T ss_dssp             CSCEEEEEEECC
T ss_pred             CCCceEEEECCc
Confidence            357999998764

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=88.65  E-value=0.19  Score=51.92  Aligned_cols=90  Identities=17%  Similarity=0.097  Sum_probs=58.0

Q ss_pred             hhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChh
Q 006634          490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTK  569 (637)
Q Consensus       490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~  569 (637)
                      +...|++++.+  ++-.+||||+|.|.+.+-+-+ |.  .-++.||.++.+.++++.+....  ....++..|...    
T Consensus        80 l~~yf~~l~~~--n~~~~LDlfaGSGaLgiEaLS-~~--d~~vfvE~~~~a~~~L~~Nl~~~--~~~~V~~~D~~~----  148 (283)
T 2oo3_A           80 FLEYISVIKQI--NLNSTLSYYPGSPYFAINQLR-SQ--DRLYLCELHPTEYNFLLKLPHFN--KKVYVNHTDGVS----  148 (283)
T ss_dssp             GHHHHHHHHHH--SSSSSCCEEECHHHHHHHHSC-TT--SEEEEECCSHHHHHHHTTSCCTT--SCEEEECSCHHH----
T ss_pred             HHHHHHHHHHh--cCCCceeEeCCcHHHHHHHcC-CC--CeEEEEeCCHHHHHHHHHHhCcC--CcEEEEeCcHHH----
Confidence            45667777773  456799999999998666656 33  46789999999999998765321  112233344321    


Q ss_pred             hHHHhhhccCCccEEEEcCCC
Q 006634          570 KFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       570 ~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      -+..+......+|||.-=||=
T Consensus       149 ~L~~l~~~~~~fdLVfiDPPY  169 (283)
T 2oo3_A          149 KLNALLPPPEKRGLIFIDPSY  169 (283)
T ss_dssp             HHHHHCSCTTSCEEEEECCCC
T ss_pred             HHHHhcCCCCCccEEEECCCC
Confidence            122222222359999999984

>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.56  E-value=0.36  Score=41.26  Aligned_cols=39  Identities=23%  Similarity=0.289  Sum_probs=33.5

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      .+++..|+.|||++++|..|+-.|+.  .++.=+++|+..+
T Consensus        30 e~~i~~L~~MGF~~~~a~~AL~~t~~--nve~A~ewL~~~~   68 (83)
T 2dai_A           30 EAALRQLTEMGFPENRATKALQLNHM--SVPQAMEWLIEHA   68 (83)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHGG
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            35677999999999999999999964  5888889998866

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=88.54  E-value=1.2  Score=43.06  Aligned_cols=80  Identities=23%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||+-||.|++...+.+. |.   .++++|+++......+......+.. ...+..+|+.++..        ..+.
T Consensus        61 ~~~~vLDiGcG~G~~~~~l~~~~~~---~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~  129 (273)
T 3bus_A           61 SGDRVLDVGCGIGKPAVRLATARDV---RVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF--------EDAS  129 (273)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHSCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS--------CTTC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhcCC---EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC--------CCCC
Confidence            4679999999999999888764 54   4789999999888777665433221 12345677766531        1246


Q ss_pred             ccEEEEcCCCCCc
Q 006634          581 IDFVICQNSVPQI  593 (637)
Q Consensus       581 ~DLVIGGpPCQ~F  593 (637)
                      ||+|+....-.-+
T Consensus       130 fD~v~~~~~l~~~  142 (273)
T 3bus_A          130 FDAVWALESLHHM  142 (273)
T ss_dssp             EEEEEEESCTTTS
T ss_pred             ccEEEEechhhhC
Confidence            8999876544433

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=88.40  E-value=0.61  Score=46.60  Aligned_cols=82  Identities=12%  Similarity=0.008  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||+=||.|.++. +.+.+ + ..|+++|+|+.....++......  ....++.+|+.+++-..+.   ...+..+
T Consensus        21 ~~~~VLEIG~G~G~lt~-l~~~~-~-~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~---~~~~~~~   92 (252)
T 1qyr_A           21 KGQAMVEIGPGLAALTE-PVGER-L-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELA---EKMGQPL   92 (252)
T ss_dssp             TTCCEEEECCTTTTTHH-HHHTT-C-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHH---HHHTSCE
T ss_pred             CcCEEEEECCCCcHHHH-hhhCC-C-CeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhh---cccCCce
Confidence            45789999999999999 87632 1 12789999999988887543211  1233578999887644321   0013468


Q ss_pred             EEEEcCCCCC
Q 006634          583 FVICQNSVPQ  592 (637)
Q Consensus       583 LVIGGpPCQ~  592 (637)
                      +|+|.+|=+-
T Consensus        93 ~vvsNlPY~i  102 (252)
T 1qyr_A           93 RVFGNLPYNI  102 (252)
T ss_dssp             EEEEECCTTT
T ss_pred             EEEECCCCCc
Confidence            9999998543

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=88.36  E-value=0.58  Score=45.44  Aligned_cols=71  Identities=13%  Similarity=0.103  Sum_probs=48.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +.+.+|||+-||.|.+...+.+.  |.   .++++|+++...+..+...     ....+...|+.++..        ..+
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~---~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------~~~  147 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEI---TTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF--------SDT  147 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTS---EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB--------CTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCC---eEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC--------CCC
Confidence            35678999999999999988886  54   4789999999887766532     122345667665431        114


Q ss_pred             CccEEEEcC
Q 006634          580 SIDFVICQN  588 (637)
Q Consensus       580 ~~DLVIGGp  588 (637)
                      .||+|+...
T Consensus       148 ~fD~v~~~~  156 (269)
T 1p91_A          148 SMDAIIRIY  156 (269)
T ss_dssp             CEEEEEEES
T ss_pred             ceeEEEEeC
Confidence            678877543

>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1

Probab=88.31  E-value=0.54  Score=41.97  Aligned_cols=40  Identities=20%  Similarity=0.232  Sum_probs=34.0

Q ss_pred             hhHHHHHHHhc-CCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           77 HIEKRASLLMM-NFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        77 ~~~~~~~lv~M-GF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ..+++..|+.| ||++++|..|+.+|+-|  ++.-+++|+...
T Consensus        39 ~eekVk~L~EmtG~seeeAr~AL~~~ngD--l~~AI~~Lleg~   79 (104)
T 1wj7_A           39 FEEKVKQLIDITGKNQDECVIALHDCNGD--VNRAINVLLEGN   79 (104)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhhCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            45788999999 99999999999999987  467788888653

>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1

Probab=88.30  E-value=0.77  Score=37.07  Aligned_cols=40  Identities=15%  Similarity=0.112  Sum_probs=32.0

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHh---CCCCcHHHHHHHHH
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKL---GKDAPVYELVDFIT  115 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~---G~da~i~~Lld~I~  115 (637)
                      ..++.++.|+.+||++.|+.+|++++   +++.++++++-.-+
T Consensus        16 ~~~ea~~AL~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~AL   58 (62)
T 1ixs_A           16 AAEEAVMALAALGFKEAQARAVVLDLLAQNPKARAQDLIKEAL   58 (62)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            34678999999999999999999998   44566777765544

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=88.28  E-value=0.81  Score=44.45  Aligned_cols=83  Identities=14%  Similarity=0.076  Sum_probs=55.9

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  577 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~-  577 (637)
                      .+-+||++-||.|+..+.+.++   +.   .++++|+++......+.+|...+... ..++.+|..++    ++.+... 
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  142 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDG---KITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLA----LDNLLQGQ  142 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTC---EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHST
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcc
Confidence            3468999999999999988775   43   47899999999999998887543211 12344555432    1222111 


Q ss_pred             --cCCccEEEEcCCCCC
Q 006634          578 --LGSIDFVICQNSVPQ  592 (637)
Q Consensus       578 --~g~~DLVIGGpPCQ~  592 (637)
                        .+.||+|+-..+|..
T Consensus       143 ~~~~~fD~I~~d~~~~~  159 (237)
T 3c3y_A          143 ESEGSYDFGFVDADKPN  159 (237)
T ss_dssp             TCTTCEEEEEECSCGGG
T ss_pred             CCCCCcCEEEECCchHH
Confidence              357999998776654

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=88.25  E-value=0.52  Score=45.85  Aligned_cols=38  Identities=26%  Similarity=0.254  Sum_probs=33.4

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  116 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a  116 (637)
                      .++++..|+.|||+++.|..|+.+++-|  ++.-++.|+.
T Consensus       163 ~eekV~~l~~MGf~~~~a~~AL~~~~wd--~~~A~e~L~~  200 (201)
T 3k9o_A          163 YTKKIENLCAMGFDRNAVIVALSSKSWD--VETATELLLS  200 (201)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHTTTC--HHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHhc
Confidence            4789999999999999999999999875  5788888875

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=88.22  E-value=0.77  Score=43.06  Aligned_cols=78  Identities=18%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             CCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006634          504 GLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +.+|||+.||.|..+..+.++   |.   .++++|+++...+..+.++...+... ..++.+|..++    +.   ...+
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~---~~~~  126 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISS---RVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGI----AA---GQRD  126 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTC---EEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHH----HT---TCCS
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHH----hc---cCCC
Confidence            468999999999999998876   43   47899999999988888776442111 11334444321    11   1124


Q ss_pred             CccEEEEcCCCCC
Q 006634          580 SIDFVICQNSVPQ  592 (637)
Q Consensus       580 ~~DLVIGGpPCQ~  592 (637)
                       ||+|+...++..
T Consensus       127 -fD~v~~~~~~~~  138 (210)
T 3c3p_A          127 -IDILFMDCDVFN  138 (210)
T ss_dssp             -EEEEEEETTTSC
T ss_pred             -CCEEEEcCChhh
Confidence             999987766544

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=88.12  E-value=0.39  Score=48.90  Aligned_cols=82  Identities=18%  Similarity=0.185  Sum_probs=53.5

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh---c-CCCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES---S-GQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~---t-n~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +.+.+||+|-||.|++...+.+.. ....+++||+|+...+..+.++..   . ......++.+|+.++...      ..
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~------~~  166 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQ------TP  166 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHS------SC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHh------cc
Confidence            456799999999999999888763 234678999999998888876631   1 111222445665432110      01


Q ss_pred             cCCccEEEEcCCC
Q 006634          578 LGSIDFVICQNSV  590 (637)
Q Consensus       578 ~g~~DLVIGGpPC  590 (637)
                      .+.||+|+..+|.
T Consensus       167 ~~~fDvIi~d~~~  179 (304)
T 3bwc_A          167 DNTYDVVIIDTTD  179 (304)
T ss_dssp             TTCEEEEEEECC-
T ss_pred             CCceeEEEECCCC
Confidence            3579999986543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=88.12  E-value=1.2  Score=45.24  Aligned_cols=47  Identities=9%  Similarity=0.013  Sum_probs=37.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      |.+.+||||=||.|+....+.+.|.  ..|+++|+++.+.+.-+..+..
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~~~--~~v~GiD~S~~~l~~A~~~~~~   93 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYGEI--ALLVATDPDADAIARGNERYNK   93 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCcHhHHHHHhcCC--CeEEEEECCHHHHHHHHHHHHh
Confidence            5578999999999997666666664  2478999999999888776543

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=87.92  E-value=0.5  Score=48.73  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=53.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcC----CCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSG----QTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn----~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +.+.+||+|-||.|++...+.+.. +...+++||+|+...+..+.++...+    .....++.+|+.+.    +.   ..
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~----l~---~~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEF----LK---NH  178 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHH----HH---HC
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHH----HH---hc
Confidence            355789999999999998887752 23468899999999999888775321    11122345555431    11   12


Q ss_pred             cCCccEEEEcCC
Q 006634          578 LGSIDFVICQNS  589 (637)
Q Consensus       578 ~g~~DLVIGGpP  589 (637)
                      .+.||+|+..+|
T Consensus       179 ~~~fD~Ii~d~~  190 (314)
T 2b2c_A          179 KNEFDVIITDSS  190 (314)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCceEEEEcCC
Confidence            357999997664

>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}

Probab=87.54  E-value=1.3  Score=46.47  Aligned_cols=86  Identities=13%  Similarity=0.066  Sum_probs=44.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCC--CCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCC-CCCccccc----chhh
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGK--DAPVYELVDFITAAQISENFEKETDDAPHDNDGTNE-DKSDETLY----GTME  151 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~--da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~-e~~~e~~~----~~~~  151 (637)
                      .++++|...||+++.|.++|.++-.  ..+++.|...|-..+..+-..         ++-..= -.-+.-+.    ..+.
T Consensus        80 ~~i~~L~~LGls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~---------~~i~~ll~~~P~lL~~s~e~i~~  150 (335)
T 4fp9_B           80 DIISEFILLGLNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGE---------GKLKRVLYCCPEIFTMRQQDIND  150 (335)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTT---------TTHHHHHHHCGGGGTSCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCH---------HHHHHHHHhCchhhccChHHHHH
Confidence            4677788888888888888888743  122333333333222222110         000000 00001010    1124


Q ss_pred             hHHHHH-hcCCCHHHHHHHHHhh
Q 006634          152 ITLQLL-EMGFSENQVSLAIEKF  173 (637)
Q Consensus       152 k~~~L~-~MGfseeEas~Ai~r~  173 (637)
                      ++..|. .|||+.+|+..+|-+|
T Consensus       151 ~v~~L~~~lGfS~~ev~~mv~r~  173 (335)
T 4fp9_B          151 TVRLLKEKCLFTVQQVTKILHSC  173 (335)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHhC
Confidence            445665 8999999999887775

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=87.54  E-value=0.97  Score=44.27  Aligned_cols=71  Identities=14%  Similarity=0.187  Sum_probs=51.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+=||.|.+...+.+.|.   .++++|+++......+..+     ....+...|+.++..         .+.||
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~---------~~~fD  119 (279)
T 3ccf_A           57 PGEFILDLGCGTGQLTEKIAQSGA---EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRV---------DKPLD  119 (279)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC---EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCC---------SSCEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhCCC---eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCc---------CCCcC
Confidence            457899999999999999988775   4789999999887776543     122355677766542         14688


Q ss_pred             EEEEcCCC
Q 006634          583 FVICQNSV  590 (637)
Q Consensus       583 LVIGGpPC  590 (637)
                      +|+....-
T Consensus       120 ~v~~~~~l  127 (279)
T 3ccf_A          120 AVFSNAML  127 (279)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcchh
Confidence            88875543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=87.46  E-value=1.2  Score=39.79  Aligned_cols=43  Identities=12%  Similarity=-0.035  Sum_probs=36.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  547 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~  547 (637)
                      ..+.+|||+-||.|.+...+.+.+.   .++++|+++......+..
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~   58 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT---KLYCIDINVIALKEVKEK   58 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE---EEEEECSCHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC---eEEEEeCCHHHHHHHHHh
Confidence            3467899999999999999999873   578999999988877654

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=87.42  E-value=1.5  Score=51.43  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhhcccccccCCCCCCCCCCCCCCCCccc--ccchhhhHH
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQISENFEKETDDAPHDNDGTNEDKSDET--LYGTMEITL  154 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~~~~~~~e~~d~~~d~d~~~~e~~~e~--~~~~~~k~~  154 (637)
                      ..+.++.|+.||||+.-..+|+..-|..+. +.-++.|+++..-...+.    .+....... ......  -....+.+.
T Consensus       652 d~~~l~~L~~mGf~~~~~~kal~~t~n~~~-e~a~~wl~~hmdd~di~~----p~~~~~~~~-~~s~~~~~~~~~~e~i~  725 (854)
T 3ihp_A          652 DESVIIQLVEMGFPMDACRKAVYYTGNSGA-EAAMNWVMSHMDDPDFAN----PLILPGSSG-PGSTSAAADPPPEDCVT  725 (854)
T ss_dssp             -CHHHHHHHHHTCCHHHHHHHHHHTTSCCH-HHHHHHHHHHTTSCGGGS----CCCCC---------------CCHHHHH
T ss_pred             CHHHHHHHHhcCCCHHHHHHHHhhcCCCch-HHHhHHHhhccCcccccc----ccccccccc-ccccccccCCCCHHHHH
Confidence            456788999999999999999999999875 888899987743221110    000000000 000000  001235677


Q ss_pred             HHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634          155 QLLEMGFSENQVSLAIEKFGSKTPISELADKIFS  188 (637)
Q Consensus       155 ~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~A  188 (637)
                      .|..|||+.++|..|+...+.  .++.-+|.|+.
T Consensus       726 ~l~~mGf~~~~a~~aL~~t~~--~~eraidwlfs  757 (854)
T 3ihp_A          726 TIVSMGFSRDQALKALRATNN--SLERAVDWIFS  757 (854)
T ss_dssp             HHHTTTCCHHHHHHHHHHTTT--CHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHhhcC--cHHHHHHhhhc
Confidence            899999999999999999976  57777777776

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=87.09  E-value=1.1  Score=41.15  Aligned_cols=55  Identities=9%  Similarity=-0.055  Sum_probs=36.7

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  567 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt  567 (637)
                      +.+.+||||-||.|+++..+.+. +-.-..++++|+++.+.           ..+..++.+|+.+..
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-----------~~~v~~~~~d~~~~~   76 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-----------IPNVYFIQGEIGKDN   76 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-----------CTTCEEEECCTTTTS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-----------CCCceEEEccccchh
Confidence            35678999999999999988764 20012478999998421           122334567776654

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=87.02  E-value=0.56  Score=46.12  Aligned_cols=84  Identities=10%  Similarity=0.095  Sum_probs=56.1

Q ss_pred             CCCcccccCCCCChHHHHHHHc---CCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc-
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL---GIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK-  577 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a---Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~-  577 (637)
                      .+-+|||+-||.|...+.|.++   |.   .++++|+++......+.++...+... ..++.+|..++    +..+... 
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~---~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~----l~~l~~~~  151 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDG---KILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPV----LDEMIKDE  151 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTC---EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHSG
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCC---EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHH----HHHHHhcc
Confidence            3468999999999999988775   43   47899999999999888886543211 11344555432    1212111 


Q ss_pred             --cCCccEEEEcCCCCCc
Q 006634          578 --LGSIDFVICQNSVPQI  593 (637)
Q Consensus       578 --~g~~DLVIGGpPCQ~F  593 (637)
                        .+.||+|+-..++..+
T Consensus       152 ~~~~~fD~V~~d~~~~~~  169 (247)
T 1sui_A          152 KNHGSYDFIFVDADKDNY  169 (247)
T ss_dssp             GGTTCBSEEEECSCSTTH
T ss_pred             CCCCCEEEEEEcCchHHH
Confidence              3579999987776543

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=86.64  E-value=0.74  Score=38.05  Aligned_cols=43  Identities=16%  Similarity=-0.006  Sum_probs=35.1

Q ss_pred             chhhHHHHHHHhcCCCHHHH-HHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           75 GLHIEKRASLLMMNFSVNEV-DFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        75 s~~~~~~~~lv~MGF~~eeV-~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ......+..|..|||..... .+|+..++-+  ++.-+|+|+..+.
T Consensus        17 ~~y~~ql~qL~~MGF~d~~an~~AL~at~Gn--ve~Ave~L~~~~~   60 (67)
T 2dna_A           17 VRFSKEMECLQAMGFVNYNANLQALIATDGD--TNAAIYKLKSSQG   60 (67)
T ss_dssp             HHTHHHHHHHHHHTCCCHHHHHHHHHHTTSC--HHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhCCC
Confidence            34567899999999976655 9999999954  6899999998754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=86.34  E-value=0.54  Score=45.02  Aligned_cols=45  Identities=16%  Similarity=0.212  Sum_probs=37.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      .+.+|||+-||.|.+...+.+.|.  ..++++|+++.+....+.+..
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~--~~v~gvD~s~~~l~~a~~~~~  100 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF--TEIIVSDYTDQNLWELQKWLK  100 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE--EEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHhhccc--CeEEEecCCHHHHHHHHHHHh
Confidence            457899999999999988888886  457899999999888877654

>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=86.31  E-value=0.56  Score=40.29  Aligned_cols=39  Identities=15%  Similarity=0.308  Sum_probs=32.4

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      .+++..|+.|||++++|..|+..++-+  ++.-+++++.-.
T Consensus        22 ~~~I~qL~~MGF~~~~a~~AL~~~n~n--~e~A~ewL~~h~   60 (85)
T 2dkl_A           22 SRLIKQLTDMGFPREPAEEALKSNNMN--LDQAMSALLEKK   60 (85)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHHCc
Confidence            467779999999999999999777765  777788888765

>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B

Probab=86.09  E-value=0.71  Score=35.92  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=28.8

Q ss_pred             hhHHHHHhcCC-CHHHHHHHHHhhCCCCChhhhhhhhhh
Q 006634          151 EITLQLLEMGF-SENQVSLAIEKFGSKTPISELADKIFS  188 (637)
Q Consensus       151 ~k~~~L~~MGf-seeEas~Ai~r~G~da~i~eLvD~I~A  188 (637)
                      +++..|+.||| +++.+..|+..+|-+  ++.-++.++.
T Consensus        14 ~~l~~L~~MGF~~~~~~~~AL~~t~gn--~e~A~e~L~~   50 (52)
T 2jy5_A           14 QQLEQLSAMGFLNREANLQALIATGGD--INAAIERLLG   50 (52)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHTTC--HHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHh
Confidence            57779999999 888889999999875  5555666553

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=86.09  E-value=1.4  Score=42.40  Aligned_cols=84  Identities=13%  Similarity=0.167  Sum_probs=53.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc--CC
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL--GS  580 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~--g~  580 (637)
                      +-+|||+-||.|...+.+.++--+--.++++|+++...+..+.++...+... ..+..+|+.+.    +..+....  +.
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~----l~~l~~~~~~~~  148 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALAT----LEQLTQGKPLPE  148 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HHHHHTSSSCCC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH----HHHHHhcCCCCC
Confidence            4689999999999999888751101247899999999988888876543211 11334554321    22221111  67


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      ||+|+-..++.
T Consensus       149 fD~V~~d~~~~  159 (232)
T 3cbg_A          149 FDLIFIDADKR  159 (232)
T ss_dssp             EEEEEECSCGG
T ss_pred             cCEEEECCCHH
Confidence            99999766543

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=85.82  E-value=1.5  Score=47.90  Aligned_cols=80  Identities=10%  Similarity=0.128  Sum_probs=52.9

Q ss_pred             CCCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHh-------hhcC--CCCCccccccccccChhhHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWW-------ESSG--QTGELVQIEDIQALTTKKFE  572 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~-------~~tn--~~g~l~~~~DI~~Lt~~~Ie  572 (637)
                      .+-+||||=||.|.+.+.+. ..|.  .-+++||+++.+..+-+...       ...+  .....++.+|+.++.-..  
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~--~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d--  248 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNC--KHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRE--  248 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCC--SEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHH--
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC--CEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccc--
Confidence            46789999999999998776 4565  34789999987766554421       1111  112335678988764211  


Q ss_pred             HhhhccCCccEEEEcCCC
Q 006634          573 SLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       573 ~l~~~~g~~DLVIGGpPC  590 (637)
                          .++.+|+|+..++|
T Consensus       249 ----~~~~aDVVf~Nn~~  262 (438)
T 3uwp_A          249 ----RIANTSVIFVNNFA  262 (438)
T ss_dssp             ----HHHTCSEEEECCTT
T ss_pred             ----ccCCccEEEEcccc
Confidence                12468999987776

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=85.73  E-value=0.69  Score=45.59  Aligned_cols=49  Identities=8%  Similarity=-0.048  Sum_probs=40.8

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS  551 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t  551 (637)
                      +..-+||||=||.|.+++.+....=.. .++++|||+.+..+.+++....
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~   96 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKL   96 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHS
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhc
Confidence            456799999999999999998774333 6899999999999999887543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=85.55  E-value=0.54  Score=48.93  Aligned_cols=81  Identities=21%  Similarity=0.235  Sum_probs=53.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +.+.+||+|-||.|++...+.+.. +...|++||+++...+..+.++...    +.....++.+|+.+.    +..+  .
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~----l~~~--~  191 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAF----LKNA--A  191 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHH----HHTS--C
T ss_pred             CCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHH----HHhc--c
Confidence            355789999999999999888762 2245789999999999888876431    111222455665432    1110  1


Q ss_pred             cCCccEEEEcCC
Q 006634          578 LGSIDFVICQNS  589 (637)
Q Consensus       578 ~g~~DLVIGGpP  589 (637)
                      .+.||+|+.-++
T Consensus       192 ~~~fDlIi~d~~  203 (334)
T 1xj5_A          192 EGSYDAVIVDSS  203 (334)
T ss_dssp             TTCEEEEEECCC
T ss_pred             CCCccEEEECCC
Confidence            257999997543

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=85.47  E-value=0.5  Score=47.37  Aligned_cols=73  Identities=8%  Similarity=-0.030  Sum_probs=48.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhc----CCCCCccccccccccChhhHHHhhhc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESS----GQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~t----n~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +++-+||++-||.|++...+.+.|   ..+++||+|+...+..+.++...    ..+...++.+|..+.-          
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~---~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----------  137 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYD---THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----------  137 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSS---CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----------
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCC---CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----------
Confidence            355789999999999988777765   46789999999877766554320    0111223445554321          


Q ss_pred             cCCccEEEEcC
Q 006634          578 LGSIDFVICQN  588 (637)
Q Consensus       578 ~g~~DLVIGGp  588 (637)
                       +.+|+|+...
T Consensus       138 -~~fD~Ii~d~  147 (262)
T 2cmg_A          138 -KKYDLIFCLQ  147 (262)
T ss_dssp             -CCEEEEEESS
T ss_pred             -hhCCEEEECC
Confidence             4689998764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=85.46  E-value=0.56  Score=44.06  Aligned_cols=40  Identities=15%  Similarity=0.134  Sum_probs=31.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRI  543 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t  543 (637)
                      .+.+|||+-||.|.+...|.+.+- -..++++|+++.....
T Consensus        27 ~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~   66 (218)
T 3mq2_A           27 YDDVVLDVGTGDGKHPYKVARQNP-SRLVVALDADKSRMEK   66 (218)
T ss_dssp             SSEEEEEESCTTCHHHHHHHHHCT-TEEEEEEESCGGGGHH
T ss_pred             CCCEEEEecCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHH
Confidence            467899999999999999988731 1357899999985553

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=85.32  E-value=0.59  Score=48.75  Aligned_cols=76  Identities=14%  Similarity=0.219  Sum_probs=51.8

Q ss_pred             CCcccccCCCCChHHHHHHHc--CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRL--GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~a--Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .++||+|=||.|++...+.+.  +.   -+.+||||+...+..+.|+.........++++|..++-    ..+  ..+.|
T Consensus        90 ~~rVLdIG~G~G~la~~la~~~p~~---~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l----~~~--~~~~f  160 (317)
T 3gjy_A           90 KLRITHLGGGACTMARYFADVYPQS---RNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVA----ESF--TPASR  160 (317)
T ss_dssp             GCEEEEESCGGGHHHHHHHHHSTTC---EEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHH----HTC--CTTCE
T ss_pred             CCEEEEEECCcCHHHHHHHHHCCCc---EEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHH----hhc--cCCCC
Confidence            469999999999999888873  54   35789999999999888875321122234566665421    110  12579


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+||...
T Consensus       161 DvIi~D~  167 (317)
T 3gjy_A          161 DVIIRDV  167 (317)
T ss_dssp             EEEEECC
T ss_pred             CEEEECC
Confidence            9999754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=84.98  E-value=0.8  Score=54.01  Aligned_cols=45  Identities=16%  Similarity=0.163  Sum_probs=36.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  547 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~  547 (637)
                      .+.+||||-||.|.+...|.+.|-+..-|++||+++.+.+..+..
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReR  765 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKM  765 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHH
Confidence            467999999999999999999872223578999999988877653

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=84.77  E-value=0.34  Score=47.55  Aligned_cols=85  Identities=13%  Similarity=0.144  Sum_probs=53.8

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhc--cCC
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHK--LGS  580 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~--~g~  580 (637)
                      +-+|||+-||.|+.++.|.++-=+--.|++||+++......+.++...+... ..++.+|..++-    ..+...  .+.
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l----~~~~~~~~~~~  136 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTL----HSLLNEGGEHQ  136 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHH----HHHHHHHCSSC
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH----HHHhhccCCCC
Confidence            4689999999999999988741001247899999987777777665543221 224456654432    111111  368


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      ||+|+-..++..
T Consensus       137 fD~V~~d~~~~~  148 (242)
T 3r3h_A          137 FDFIFIDADKTN  148 (242)
T ss_dssp             EEEEEEESCGGG
T ss_pred             EeEEEEcCChHH
Confidence            999987766543

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=84.24  E-value=1.9  Score=44.72  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=49.2

Q ss_pred             CCCCcccccCCCCChHHH-HHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634          502 PGGLTMLSVFSGIGGAEV-TLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlsl-GL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +.+-+|||+=||.||++. -+.+ .|.   .|+++|+++.....-+.+....+.....++.+|..++.          .+
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga---~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~----------d~  187 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGM---RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID----------GL  187 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCC---EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG----------GC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCC---EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC----------CC
Confidence            457899999999998763 3333 465   37899999999888777665433222234567776542          24


Q ss_pred             CccEEEE
Q 006634          580 SIDFVIC  586 (637)
Q Consensus       580 ~~DLVIG  586 (637)
                      .||+|+-
T Consensus       188 ~FDvV~~  194 (298)
T 3fpf_A          188 EFDVLMV  194 (298)
T ss_dssp             CCSEEEE
T ss_pred             CcCEEEE
Confidence            7999973

>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.15  E-value=0.85  Score=38.03  Aligned_cols=31  Identities=16%  Similarity=0.269  Sum_probs=28.9

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||+++.+.||+...|-.|.+.=+|.||...
T Consensus        19 MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~   49 (74)
T 2dag_A           19 MGFPMDACRKAVYYTGNSGAEAAMNWVMSHM   49 (74)
T ss_dssp             HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            9999999999999999878999999999874

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=83.97  E-value=0.86  Score=43.02  Aligned_cols=70  Identities=26%  Similarity=0.310  Sum_probs=46.5

Q ss_pred             cccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhh
Q 006634          496 VLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLI  575 (637)
Q Consensus       496 vLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~  575 (637)
                      .|..+.| +.+|||+-||.|.+...+.+.       +++|+++...+..+..       +..+...|+.++..       
T Consensus        41 ~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~-------   98 (219)
T 1vlm_A           41 AVKCLLP-EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL-------   98 (219)
T ss_dssp             HHHHHCC-SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------
T ss_pred             HHHHhCC-CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC-------
Confidence            3444445 779999999999998877554       7899999988776542       22244566655431       


Q ss_pred             hccCCccEEEEcC
Q 006634          576 HKLGSIDFVICQN  588 (637)
Q Consensus       576 ~~~g~~DLVIGGp  588 (637)
                       ..+.+|+|+...
T Consensus        99 -~~~~fD~v~~~~  110 (219)
T 1vlm_A           99 -KDESFDFALMVT  110 (219)
T ss_dssp             -CTTCEEEEEEES
T ss_pred             -CCCCeeEEEEcc
Confidence             113577777543

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=83.06  E-value=1.8  Score=38.80  Aligned_cols=39  Identities=21%  Similarity=0.130  Sum_probs=33.2

Q ss_pred             hhHHHHHHHhcCCCH-HHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           77 HIEKRASLLMMNFSV-NEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~-eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      ...++..|..|||+. +.+.+|+.+++-+  ++.-||+|+..
T Consensus        66 ~~~qL~qL~eMGF~d~~~ni~AL~~t~Gd--ve~AVe~L~~~  105 (108)
T 2cwb_A           66 WQPQLQQLRDMGIQDDELSLRALQATGGD--IQAALELIFAG  105 (108)
T ss_dssp             THHHHHHHHTTTCCCHHHHHHHHHHHTSC--HHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCCHHHHHHHHHHhCCC--HHHHHHHHHhc
Confidence            467899999999964 7999999999954  68999999875

>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A

Probab=82.95  E-value=0.98  Score=35.63  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=26.0

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCCh
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPI  179 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i  179 (637)
                      .+++..|+.|||+.++|-.|+..+.-+..+
T Consensus        12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~   41 (52)
T 2ooa_A           12 DAKIAKLMGEGYAFEEVKRALEIAQNNVEV   41 (52)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCHHH
Confidence            378999999999999999999998887433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=82.52  E-value=2.6  Score=41.70  Aligned_cols=80  Identities=11%  Similarity=0.082  Sum_probs=47.0

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ..+.+||||-||.|+++.-+.+. |=. -.|+++|+++...+.+...-..  ......+.+|++.....  .   ...+.
T Consensus        75 ~~g~~VLDlG~GtG~~t~~la~~v~~~-G~V~avD~s~~~l~~l~~~a~~--r~nv~~i~~Da~~~~~~--~---~~~~~  146 (232)
T 3id6_C           75 RKGTKVLYLGAASGTTISHVSDIIELN-GKAYGVEFSPRVVRELLLVAQR--RPNIFPLLADARFPQSY--K---SVVEN  146 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHTTT-SEEEEEECCHHHHHHHHHHHHH--CTTEEEEECCTTCGGGT--T---TTCCC
T ss_pred             CCCCEEEEEeecCCHHHHHHHHHhCCC-CEEEEEECcHHHHHHHHHHhhh--cCCeEEEEcccccchhh--h---ccccc
Confidence            34789999999999998777643 321 1478999999764333221111  12223456787653210  0   01246


Q ss_pred             ccEEEEcCC
Q 006634          581 IDFVICQNS  589 (637)
Q Consensus       581 ~DLVIGGpP  589 (637)
                      ||+|+-..|
T Consensus       147 ~D~I~~d~a  155 (232)
T 3id6_C          147 VDVLYVDIA  155 (232)
T ss_dssp             EEEEEECCC
T ss_pred             eEEEEecCC
Confidence            888875543

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=82.50  E-value=1  Score=43.81  Aligned_cols=72  Identities=24%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+.+|||+=||.|.+...|.+.|.   .++++|+++......+.      .....+..+|+.++.-        ..+.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~~~~a~~------~~~~~~~~~d~~~~~~--------~~~~f   95 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGL---FVYAVEPSIVMRQQAVV------HPQVEWFTGYAENLAL--------PDKSV   95 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTC---EEEEECSCHHHHHSSCC------CTTEEEECCCTTSCCS--------CTTCB
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCC---EEEEEeCCHHHHHHHHh------ccCCEEEECchhhCCC--------CCCCE
Confidence            3568999999999999999998875   36899999976543221      1122345677766542        12468


Q ss_pred             cEEEEcCCC
Q 006634          582 DFVICQNSV  590 (637)
Q Consensus       582 DLVIGGpPC  590 (637)
                      |+|+.....
T Consensus        96 D~v~~~~~l  104 (261)
T 3ege_A           96 DGVISILAI  104 (261)
T ss_dssp             SEEEEESCG
T ss_pred             eEEEEcchH
Confidence            888876543

>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1

Probab=82.06  E-value=1.1  Score=38.21  Aligned_cols=31  Identities=23%  Similarity=0.257  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||+++.+.||+...|..|.+.=+|.|+...
T Consensus        39 MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h~   69 (84)
T 1vek_A           39 MGFSQLHCQKAAINTSNAGVEEAMNWLLSHM   69 (84)
T ss_dssp             HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence            9999999999999999889999999999874

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=80.65  E-value=1.2  Score=35.06  Aligned_cols=38  Identities=21%  Similarity=0.238  Sum_probs=29.6

Q ss_pred             hhhHHHHHhcCCCHHHH-HHHHHhhCCCCChhhhhhhhhhc
Q 006634          150 MEITLQLLEMGFSENQV-SLAIEKFGSKTPISELADKIFSG  189 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEa-s~Ai~r~G~da~i~eLvD~I~Aa  189 (637)
                      .+++..|..|||+.+++ ..|+.+++-|  |+.-++.++..
T Consensus        10 ~~~l~~L~~MGF~d~~~n~~AL~~~~Gd--v~~Ave~L~~~   48 (54)
T 2dah_A           10 QVQLEQLRSMGFLNREANLQALIATGGD--VDAAVEKLRQS   48 (54)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHTSC--HHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHcCCC--HHHHHHHHHhC
Confidence            35777999999988875 8899999966  55557777654

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=80.50  E-value=2.1  Score=41.82  Aligned_cols=85  Identities=12%  Similarity=0.105  Sum_probs=51.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh------cCCCCCccccccccccChhhHHHhhh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES------SGQTGELVQIEDIQALTTKKFESLIH  576 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~------tn~~g~l~~~~DI~~Lt~~~Ie~l~~  576 (637)
                      .+.+||||=||.|.+.+.|.+.. +-..+++||+++......+.....      .+.....++.+|+.+.    +...+ 
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~----l~~~~-  119 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKH----LPNFF-  119 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTC----HHHHC-
T ss_pred             CCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHh----hhhhC-
Confidence            45789999999999999987763 113578999999887655543221      1111223456777641    11111 


Q ss_pred             ccCCccEEEEcCCCCCc
Q 006634          577 KLGSIDFVICQNSVPQI  593 (637)
Q Consensus       577 ~~g~~DLVIGGpPCQ~F  593 (637)
                      ..+.+|+|+-.+|..-+
T Consensus       120 ~~~~~D~v~~~~~dp~~  136 (235)
T 3ckk_A          120 YKGQLTKMFFLFPDPHF  136 (235)
T ss_dssp             CTTCEEEEEEESCC---
T ss_pred             CCcCeeEEEEeCCCchh
Confidence            23579999877765443

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=80.43  E-value=0.91  Score=46.76  Aligned_cols=38  Identities=13%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRR  542 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~  542 (637)
                      .+.+|||+=||.|+++..|.+.|.  .-|++||+++....
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~ga--~~V~aVDvs~~mL~  122 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQNGA--KLVYAVDVGTNQLV  122 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTC--SEEEEECSSSSCSC
T ss_pred             cccEEEecCCCccHHHHHHHhCCC--CEEEEEECCHHHHH
Confidence            567899999999999998888885  35899999987543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=80.32  E-value=1.2  Score=43.21  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=50.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +.+-+|||+=||.|.....+.+.+.  ..+++||+++...+..+.+....+ ....++.+|...+...      ...+.|
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~--~~v~~id~~~~~~~~a~~~~~~~~-~~~~~~~~~a~~~~~~------~~~~~F  129 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPT------LPDGHF  129 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCE--EEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGG------SCTTCE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCC--cEEEEEeCCHHHHHHHHHHHhhCC-CceEEEeehHHhhccc------ccccCC
Confidence            4688999999999999888877653  457899999999888877654332 1222334454332211      112568


Q ss_pred             cEEEE
Q 006634          582 DFVIC  586 (637)
Q Consensus       582 DLVIG  586 (637)
                      |.|+.
T Consensus       130 D~i~~  134 (236)
T 3orh_A          130 DGILY  134 (236)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            98874

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=80.05  E-value=1.7  Score=45.35  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=52.0

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhc-----C---CCCCccccccccccChhhHHH
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESS-----G---QTGELVQIEDIQALTTKKFES  573 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~t-----n---~~g~l~~~~DI~~Lt~~~Ie~  573 (637)
                      .+.+||||-||.|.+...|.+. |-. -.++++|+++.+....+.+....     +   .....+..+|+.++....  .
T Consensus        83 ~~~~VLDlGcG~G~~~~~la~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~--~  159 (383)
T 4fsd_A           83 EGATVLDLGCGTGRDVYLASKLVGEH-GKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAE--P  159 (383)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHTTT-CEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCB--S
T ss_pred             CCCEEEEecCccCHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcc--c
Confidence            4679999999999999888764 211 24789999999888777643211     0   022335667887653210  0


Q ss_pred             hhhccCCccEEEEcC
Q 006634          574 LIHKLGSIDFVICQN  588 (637)
Q Consensus       574 l~~~~g~~DLVIGGp  588 (637)
                      .....+.||+|+...
T Consensus       160 ~~~~~~~fD~V~~~~  174 (383)
T 4fsd_A          160 EGVPDSSVDIVISNC  174 (383)
T ss_dssp             CCCCTTCEEEEEEES
T ss_pred             CCCCCCCEEEEEEcc
Confidence            000124799999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	637
d1g55a_	343	c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId:	5e-05

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 5e-05
 Identities = 16/94 (17%), Positives = 37/94 (39%), Gaps = 10/94 (10%)

Query: 505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ 564
           L +L ++SG+GG    L    I  + V +I+ +     + K  +  +      +  + I+
Sbjct: 3   LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHT-----QLLAKTIE 57

Query: 565 ALTTKKFESLIHKLGSIDFVICQNSVPQIPNSKQ 598
            +T ++F+       S D ++            +
Sbjct: 58  GITLEEFDR-----LSFDMILMSPPCQPFTRIGR 86

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	637
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.91
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	99.91
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	99.05
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	98.85
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.17
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	97.95
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	97.92
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	97.84
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.79
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	97.75
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	97.71
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.68
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.59
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	97.54
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	97.41
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.33
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	97.06
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	96.76
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	96.67
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	96.58
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	96.49
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	96.44
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.39
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	96.34
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	96.32
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	96.15
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.14
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	96.12
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	96.09
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	96.07
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	95.7
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.61
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.53
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	95.45
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	95.06
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	95.05
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.0
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	94.94
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	94.32
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	94.32
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	94.28
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	94.26
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	94.16
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.13
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	94.1
d1wgna_	63	Ubiquitin-associated protein 1, UBAP1 {Human (Homo	94.07
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	94.04
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	94.0
d2g3qa1	43	Endocytic protein Ede1, YBL047C {Saccharomyces cer	93.9
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.51
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	93.13
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	92.77
d2h00a1	250	Methyltransferase 10 domain containing protein MET	92.42
d1wiva_	73	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	92.37
d1wjia_	63	Tudor domain containing protein 3, TDRD3 {Human (H	92.29
d1oqya1	41	DNA repair protein Hhr23a {Human (Homo sapiens) [T	92.27
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	92.23
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	91.96
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	91.86
d1whca_	64	UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta	91.5
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	91.41
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.2
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	90.09
d1ttea1	55	Ubiquitin-protein ligase ubc1 {Baker's yeast (Sacc	89.74
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	89.61
d2crna1	51	Suppressor of T-cell receptor signaling 2 (STS-2)	89.56
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	89.53
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	89.44
d2cpwa1	51	Cbl-interacting protein p70, STS1 {Human (Homo sap	89.12
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	89.01
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	87.8
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	86.42
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	86.07
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	85.92
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	85.79
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	85.73
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	85.25
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	85.0
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	84.36
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	84.12
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	83.92
d2cosa1	41	Serine/threonine protein kinase LATS2 {Mouse (Mus	83.9
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	83.7
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	83.48
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	83.47
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	83.46
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	83.32
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	83.1
d1z96a1	38	UBA-domain protein mud1 {Schizosaccharomyces pombe	82.43
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	81.31
d1veka_	84	Ubiquitin isopeptidase T {Thale cress (Arabidopsis	80.09

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.91  E-value=3.6e-25  Score=222.94  Aligned_cols=111  Identities=19%  Similarity=0.305  Sum_probs=96.4

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      ++...++|+||||||||||+++||+++||  ++++++|+|+.|+++|+.+|..+       ..+||++++.+.+      
T Consensus         5 ~~~~~~~lrv~~lFsG~Gg~~~gl~~aG~--~~v~a~e~d~~a~~~~~~N~~~~-------~~~Di~~~~~~~~------   69 (327)
T d2c7pa1           5 KDKQLTGLRFIDLFAGLGGFRLALESCGA--ECVYSNEWDKYAQEVYEMNFGEK-------PEGDITQVNEKTI------   69 (327)
T ss_dssp             SSCTTTTCEEEEETCTTTHHHHHHHHTTC--EEEEEECCCHHHHHHHHHHHSCC-------CBSCGGGSCGGGS------
T ss_pred             ccccCCCCeEEEECccccHHHHHHHHCCC--eEEEEEeCCHHHHHHHHHHCCCC-------CcCchhcCchhhc------
Confidence            55566889999999999999999999998  57899999999999999987432       2589999987654      


Q ss_pred             cCCccEEEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          578 LGSIDFVICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       578 ~g~~DLVIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                       .++|||+||||||+||.+            |+++|..|+|+.||++|+|+|+++||..
T Consensus        70 -~~~Dll~ggpPCq~fS~a------------g~~~g~~d~r~~l~~~~~~~i~~~kP~~  115 (327)
T d2c7pa1          70 -PDHDILCAGFPCQAFSIS------------GKQKGFEDSRGTLFFDIARIVREKKPKV  115 (327)
T ss_dssp             -CCCSEEEEECCCTTTCTT------------SCCCGGGSTTSCHHHHHHHHHHHHCCSE
T ss_pred             -ceeeeeecccccchhhhh------------hhhcCCcccchhHHHHHHHHHhccCCcE
Confidence             479999999999999975            3466889999999999999999999863

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=99.91  E-value=2.1e-25  Score=221.82  Aligned_cols=105  Identities=17%  Similarity=0.352  Sum_probs=92.3

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  584 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  584 (637)
                      |+||||||||||+++||++|||  ++++++|+|+.|+++|+.+|.     . .+..+||++++.+.+       +.+|||
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG~--~~~~a~e~d~~a~~~~~~N~~-----~-~~~~~Di~~~~~~~~-------~~~dll   65 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAGF--RIICANEYDKSIWKTYESNHS-----A-KLIKGDISKISSDEF-------PKCDGI   65 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHTC--EEEEEEECCHHHHHHHHHHCC-----S-EEEESCTTTSCGGGS-------CCCSEE
T ss_pred             CeEEEeCcCcCHHHHHHHHCCC--EEEEEEeCCHHHHHHHHHHCC-----C-CCccCChhhCCHhHc-------ccccEE
Confidence            6899999999999999999998  578999999999999987652     2 356799999988655       479999


Q ss_pred             EEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHhhccc
Q 006634          585 ICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRVRSMK  636 (637)
Q Consensus       585 IGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~vK~~~  636 (637)
                      +||||||+||.+            |++.|.+|+|+.||++|+|+|+++||..
T Consensus        66 ~~g~PCq~fS~a------------g~~~g~~d~r~~l~~~~~~~i~~~~Pk~  105 (324)
T d1dcta_          66 IGGPPCQSWSEG------------GSLRGIDDPRGKLFYEYIRILKQKKPIF  105 (324)
T ss_dssp             EECCCCTTTSSS------------SCCCCSSSHHHHHHHHHHHHHHHHCCSE
T ss_pred             eecccccccccc------------cccccccccccchHHHHHHHHHhhCCce
Confidence            999999999965            4577899999999999999999999864

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.8e-25  Score=221.33  Aligned_cols=110  Identities=16%  Similarity=0.319  Sum_probs=81.0

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +|+||||||||||+++||+++||.+++++|+|+++.|++||+.+|     ++..++.+||++++.+.+..     +++||
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~-----~~~Dl   71 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDR-----LSFDM   71 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHH-----HCCSE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCC-----CCccE
Confidence            489999999999999999999999899999999999999998764     33446679999999887753     37999


Q ss_pred             EEEcCCCCCcCccCccCCCCCccccccCCCCCCCCcchHHHHHHHHHHh--hcc
Q 006634          584 VICQNSVPQIPNSKQISNSKDPKMAAESDNLPDFDFSLYYEFVRVVQRV--RSM  635 (637)
Q Consensus       584 VIGGpPCQ~FS~sn~~~~~~~~~~aGkR~Gl~D~Rs~LF~Ey~RIV~~v--K~~  635 (637)
                      |+||||||+||.+            |++.|+.|+|+.||++|+|+|+++  ||.
T Consensus        72 l~ggpPCq~fS~a------------g~~~~~~d~r~~l~~~~~~~i~~~~~kPk  113 (343)
T d1g55a_          72 ILMSPPCQPFTRI------------GRQGDMTDSRTNSFLHILDILPRLQKLPK  113 (343)
T ss_dssp             EEECCC------------------------------CHHHHHHHHGGGCSSCCS
T ss_pred             EEeeccccccccc------------ccccccccccccccchhhhhHhhhcCCCc
Confidence            9999999999964            557789999999999999999987  564

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=99.05  E-value=3.6e-11  Score=119.80  Aligned_cols=178  Identities=15%  Similarity=0.174  Sum_probs=106.1

Q ss_pred             cCCCCccccccccccchh----hHHHhhhhh----ccCCceeeccccc-chhccccccc----ccCCCCCCCCCCCCC--
Q 006634          307 VAQPPYFFYGNVVDVSID----CWVKMSHFL----YSLEPEFVNSQYF-SALSRREGYL----HNLPTTNRFHIPPEP--  371 (637)
Q Consensus       307 ~~~ppfF~yeNV~~~~~~----~w~~IsrfL----~~i~Pe~vds~~f-saa~R~Rgy~----hNLP~~~R~~~~p~~--  371 (637)
                      ..+|+||++|||..+-..    .+..|...|    |.++..++|+..| .|++|+|.|+    +++...+.  ..|.|  
T Consensus       110 ~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY~~~~~vl~a~~~GvPQ~R~R~fivg~r~~~~~~~~--~~p~p~~  187 (327)
T d2c7pa1         110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNF--QFPKPFE  187 (327)
T ss_dssp             HHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTBCCEEEEEEGGGGTCSBCCEEEEEEEEBGGGCCCCC--CCCCCCC
T ss_pred             ccCCcEEecccchhhhhhccchhhHHhhhHHHhcCCcceeeEecHHHcCCCchhhhheeeeeccCcccccc--ccccccc
Confidence            458999999999998543    455555555    7889999999999 8999999987    34444432  22332  


Q ss_pred             -CCccccccCCCCC-----------------CCCCcCcccccceecccCcchhHHHHHHHHHHhhhcCCCchhhhHHHHH
Q 006634          372 -PMTIQDAIPHTKK-----------------WWPSWDTRKHLSCINSGTSGISQLCERFEKLLRDSRGVLSSQQQRDILH  433 (637)
Q Consensus       372 -p~ti~e~lp~~~~-----------------~wp~wd~r~k~~ci~t~~~~~~~l~~ri~~~~~~~~~~~~~~~q~~vl~  433 (637)
                       ..+|.|++.....                 ++.......+..++.....+..-...        ..-.++.....   .
T Consensus       188 ~~~~i~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~t~~~~~---~  256 (327)
T d2c7pa1         188 LNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYST--------RGIAITLSAYG---G  256 (327)
T ss_dssp             CCCCGGGTCCCGGGTGGGEECCTTCEECSCCCSSCCSSCCEEEESTTCCTTCEEEET--------TSCBCCCCSSC---C
T ss_pred             cccccccccccccchhhhcccccccccchhhhhcccchhhhhccccCCCCCcccccc--------ccccccccccC---c
Confidence             5677777632111                 11111111122222111100000000        00000000000   0


Q ss_pred             hhcccceeeecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634          434 RSEKLNLVWVGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  499 (637)
Q Consensus       434 ~c~~~nlvW~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~  499 (637)
                      ......-.+...++.+.|++.|+.||+|||.+|+.  ..+.+++++.+||++.++.+.++...++.
T Consensus       257 ~~~~~~~~~~~~~~~R~lT~rE~arLqgFPd~f~~--~~s~~~~~~~iGNAVp~~v~~~I~~~I~~  320 (327)
T d2c7pa1         257 GIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKV--HPSTSQAYKQFGNSVVINVLQYIAYNIGS  320 (327)
T ss_dssp             STTTTTCEEEETTEEEECCHHHHHHHTTCCTTSCC--CSSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred             cccCCCCcccCCCcCcCCCHHHHHHhCCCCCCcEe--CCCHHHHHhHccCCCCHHHHHHHHHHHHH
Confidence            00000112335678999999999999999999987  56899999999999999988888666543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=3.9e-10  Score=111.77  Aligned_cols=56  Identities=18%  Similarity=0.298  Sum_probs=50.1

Q ss_pred             ecCccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhcccc
Q 006634          443 VGAYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLK  498 (637)
Q Consensus       443 ~g~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK  498 (637)
                      ..+.+++.|+|.|+.||+|||.+|+...+++.++++|.+||+..++.++++++.|.
T Consensus       287 ~~~~~~R~LT~rE~arLQgFPd~f~~~~~~s~~~~ykqiGNaVp~~v~~~i~k~l~  342 (343)
T d1g55a_         287 LLILKLRYFTPKEIANLLGFPPEFGFPEKITVKQRYRLLGNSLNVHVVAKLIKILY  342 (343)
T ss_dssp             HHTTCEECCCHHHHHHHTTCCTTCCCCTTSCHHHHHHHHHHSCCHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCHHHHHHhCCCCCCCEECCCCCHHHHhhhEeCCccHHHHHHHHHHhc
Confidence            45677899999999999999999998889999999999999999999888877653

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=98.85  E-value=3.2e-10  Score=111.34  Aligned_cols=54  Identities=11%  Similarity=0.089  Sum_probs=46.5

Q ss_pred             CccccCCChhhHHHHhcCCCCCcccCCCChHHHHHhhhhhhcccchhhhhccccc
Q 006634          445 AYKLGPVDPEHIELILGYPSNHTQAAGNSLTARLESLRHCFQTDTLGYHLSVLKS  499 (637)
Q Consensus       445 ~~~~~ple~~E~E~i~GfP~~~T~~~~~~~teR~k~Lgnsfqvdtv~~~lsvLK~  499 (637)
                      ++.++.|+|.|+.||+|||.+|+.- ..+.++++|.+||+..++++.+++..|++
T Consensus       269 ~~~~R~LT~rE~arLqgFPd~~~f~-~~s~~~~y~~iGNaV~p~v~~~I~~~I~~  322 (324)
T d1dcta_         269 EHLYRRLTVRECARVQGFPDDFIFH-YESLNDGYKMIGNAVPVNLAYEIAKTIKS  322 (324)
T ss_dssp             GGGCCBCBHHHHHHHHTCCTTCCCC-CSBHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             CCcCcCCCHHHHHHHCCCCCCCEeC-CCCHHHHHeeEccCccHHHHHHHHHHHHH
Confidence            4567899999999999999999852 35899999999999999998888877764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.17  E-value=1.2e-06  Score=82.97  Aligned_cols=75  Identities=21%  Similarity=0.205  Sum_probs=57.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||||||+|++.+++...|..  .|++||+|+.+.+..+.+....+ ....+...|+.++.           +.||
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g~~--~v~~vdi~~~~~~~a~~N~~~~~-~~~~~~~~d~~~~~-----------~~fD  111 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLGAK--EVICVEVDKEAVDVLIENLGEFK-GKFKVFIGDVSEFN-----------SRVD  111 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHTGGGT-TSEEEEESCGGGCC-----------CCCS
T ss_pred             CCCEEEECcCcchHHHHHHHHcCCC--EEEEEcCcHHHHHHHHHHHHHcC-CCceEEECchhhhC-----------CcCc
Confidence            4678999999999999998888863  57899999999999988765432 22223455554432           4799


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+.-|||.
T Consensus       112 ~Vi~nPP~~  120 (201)
T d1wy7a1         112 IVIMNPPFG  120 (201)
T ss_dssp             EEEECCCCS
T ss_pred             EEEEcCccc
Confidence            999999984

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.95  E-value=9e-06  Score=73.19  Aligned_cols=88  Identities=15%  Similarity=0.264  Sum_probs=62.7

Q ss_pred             hhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhh
Q 006634          492 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKK  570 (637)
Q Consensus       492 ~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~  570 (637)
                      .+|+.|.+++ .+-+|||||||+|++.+.+-..|..  -|.+||+|+.++++++.+....+... ..++.+|+.+.    
T Consensus         4 ~~fn~l~~~~-~g~~vlDl~~GtG~~~iea~~rga~--~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~----   76 (152)
T d2esra1           4 AIFNMIGPYF-NGGRVLDLFAGSGGLAIEAVSRGMS--AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERA----   76 (152)
T ss_dssp             HHHHHHCSCC-CSCEEEEETCTTCHHHHHHHHTTCC--EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHH----
T ss_pred             HHHHHHHhhC-CCCeEEEcCCccCHHHHHHHHhCcc--eeeeehhchhhhhhhhhhhhhcccccchhhhccccccc----
Confidence            3566677766 4678999999999999877777863  68899999999999999876543222 12334454432    


Q ss_pred             HHHhhhccCCccEEEEcCC
Q 006634          571 FESLIHKLGSIDFVICQNS  589 (637)
Q Consensus       571 Ie~l~~~~g~~DLVIGGpP  589 (637)
                      ++   ...+.+|+|+--||
T Consensus        77 l~---~~~~~fDiIf~DPP   92 (152)
T d2esra1          77 ID---CLTGRFDLVFLDPP   92 (152)
T ss_dssp             HH---HBCSCEEEEEECCS
T ss_pred             cc---ccccccceeEechh
Confidence            11   12467999999998

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=97.92  E-value=7.6e-06  Score=75.38  Aligned_cols=87  Identities=17%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634          495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      +.|....+.+-+|||||||.|++.+.+...|..   +++||+|+.+.+..+.++...+..      ..|.....+.....
T Consensus        33 ~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~---vv~vD~~~~a~~~~~~N~~~~~~~------~~v~~~~~d~~~~~  103 (171)
T d1ws6a1          33 DYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWE---AVLVEKDPEAVRLLKENVRRTGLG------ARVVALPVEVFLPE  103 (171)
T ss_dssp             HHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCE---EEEECCCHHHHHHHHHHHHHHTCC------CEEECSCHHHHHHH
T ss_pred             HHhhccccCCCeEEEeccccchhhhhhhhccch---hhhcccCHHHHhhhhHHHHhhccc------cceeeeehhccccc
Confidence            334445566779999999999999988888863   457999999999999988755321      12334444433222


Q ss_pred             h-hccCCccEEEEcCCC
Q 006634          575 I-HKLGSIDFVICQNSV  590 (637)
Q Consensus       575 ~-~~~g~~DLVIGGpPC  590 (637)
                      . .....||+|+--||.
T Consensus       104 ~~~~~~~fD~If~DPPY  120 (171)
T d1ws6a1         104 AKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             HHHTTCCEEEEEECCCT
T ss_pred             ccccCCccceeEEcccc
Confidence            2 234679999999983

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.84  E-value=1.4e-05  Score=74.38  Aligned_cols=89  Identities=19%  Similarity=0.282  Sum_probs=61.8

Q ss_pred             hccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHH
Q 006634          494 LSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFE  572 (637)
Q Consensus       494 lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie  572 (637)
                      |+.|..++ .+-+|||||||.|++.+.+-.-|..  -|+.||+|+.+.++++.+....+.. ...++..|+.+.    ++
T Consensus        33 Fn~l~~~~-~~~~vLDlfaGsG~~g~ea~srGa~--~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~----l~  105 (182)
T d2fhpa1          33 FNMIGPYF-DGGMALDLYSGSGGLAIEAVSRGMD--KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA----LE  105 (182)
T ss_dssp             HHHHCSCC-SSCEEEETTCTTCHHHHHHHHTTCS--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH----HH
T ss_pred             HHHHHHhc-CCCEEEEcccccccccceeeecchh--HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhh----hh
Confidence            44454444 4678999999999999977777864  5789999999999999887654321 112344555432    23


Q ss_pred             HhhhccCCccEEEEcCC
Q 006634          573 SLIHKLGSIDFVICQNS  589 (637)
Q Consensus       573 ~l~~~~g~~DLVIGGpP  589 (637)
                      .+......||+|+--||
T Consensus       106 ~~~~~~~~fDlIflDPP  122 (182)
T d2fhpa1         106 QFYEEKLQFDLVLLDPP  122 (182)
T ss_dssp             HHHHTTCCEEEEEECCC
T ss_pred             hhcccCCCcceEEechh
Confidence            33333457999999999

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.79  E-value=1.2e-05  Score=76.51  Aligned_cols=69  Identities=20%  Similarity=0.258  Sum_probs=56.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .|-+||||+||.|.+++++..+|..  .|++||+|+.+.++.+.+..     ..-+...|+.++.           +.||
T Consensus        48 ~Gk~VLDlGcGtG~l~i~a~~~ga~--~V~~vDid~~a~~~ar~N~~-----~~~~~~~D~~~l~-----------~~fD  109 (197)
T d1ne2a_          48 GGRSVIDAGTGNGILACGSYLLGAE--SVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS-----------GKYD  109 (197)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHTTBS--EEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC-----------CCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHcCCC--cccccccCHHHHHHHHHccc-----cccEEEEehhhcC-----------Ccce
Confidence            4679999999999999999999963  58999999999998887542     2235678887654           4799


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +|+.-||
T Consensus       110 ~Vi~NPP  116 (197)
T d1ne2a_         110 TWIMNPP  116 (197)
T ss_dssp             EEEECCC
T ss_pred             EEEeCcc
Confidence            9999988

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.7e-05  Score=73.61  Aligned_cols=79  Identities=15%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||||||.|.+.+.+-.-|..  -|++||+|+.+.++++.+....+.....++..|+       +.-+......||
T Consensus        43 ~~~~vLDlfaGsG~~giealsrGa~--~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~-------~~~l~~~~~~fD  113 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRYAA--GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA-------MSFLAQKGTPHN  113 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCH-------HHHHSSCCCCEE
T ss_pred             chhhhhhhhccccceeeeEEecCcc--eeEEEEEeechhhHHHHHHhhccccceeeeeecc-------cccccccccccC
Confidence            3568999999999999877777874  5789999999999999887643221112233333       222212346799


Q ss_pred             EEEEcCCC
Q 006634          583 FVICQNSV  590 (637)
Q Consensus       583 LVIGGpPC  590 (637)
                      +|+--||.
T Consensus       114 lIf~DPPY  121 (183)
T d2fpoa1         114 IVFVDPPF  121 (183)
T ss_dssp             EEEECCSS
T ss_pred             EEEEcCcc
Confidence            99999994

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=97.71  E-value=3.7e-05  Score=77.41  Aligned_cols=85  Identities=20%  Similarity=0.132  Sum_probs=60.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||||||.||+++++.+.|   .-|++||+++.+.+..+.++...+.....++..|+.++.    ..+....+.||
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~---~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~----~~~~~~~~~fD  217 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGF---REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL----RRLEKEGERFD  217 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHE---EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH----HHHHHTTCCEE
T ss_pred             CCCeeeccCCCCcHHHHHHHhcC---CcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHh----hhhHhhhcCCC
Confidence            46799999999999999987644   357899999999999998876543222223445554332    12222346899


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+-=|||...+
T Consensus       218 ~Vi~DpP~~~~~  229 (318)
T d1wxxa2         218 LVVLDPPAFAKG  229 (318)
T ss_dssp             EEEECCCCSCCS
T ss_pred             EEEEcCCccccc
Confidence            999999997655

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.68  E-value=5.3e-05  Score=76.24  Aligned_cols=88  Identities=20%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      ...+-+|||+|||.||+++.+-+.|.  +-|++||+++.+.+..+.++...+-.. ..++.+|+.+.    +..+.....
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga--~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~----~~~~~~~~~  216 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGA--DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE----MEKLQKKGE  216 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH----HHHHHHTTC
T ss_pred             cCCCCeeecccCcccchhhhhhhcCC--cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh----hHHHHhccC
Confidence            34578999999999999999988886  358899999999999998876543211 12345665432    222223346


Q ss_pred             CccEEEEcCCCCCcC
Q 006634          580 SIDFVICQNSVPQIP  594 (637)
Q Consensus       580 ~~DLVIGGpPCQ~FS  594 (637)
                      .||+|+--|||-.-+
T Consensus       217 ~fD~Vi~DpP~~~~~  231 (324)
T d2as0a2         217 KFDIVVLDPPAFVQH  231 (324)
T ss_dssp             CEEEEEECCCCSCSS
T ss_pred             CCCchhcCCccccCC
Confidence            899999999996554

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.59  E-value=3.6e-05  Score=75.64  Aligned_cols=81  Identities=16%  Similarity=0.118  Sum_probs=61.1

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +..+-+|||+|||+|++++-+.+.|-  .-|++||+|+.+.+.++.+-...+-.+ ..++.+|.+++..         .+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~--~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~---------~~  173 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG---------EN  173 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC---------CS
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCC--cEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc---------CC
Confidence            34578999999999999998777774  247899999999999988765443333 2245788876643         24


Q ss_pred             CccEEEEcCCCCC
Q 006634          580 SIDFVICQNSVPQ  592 (637)
Q Consensus       580 ~~DLVIGGpPCQ~  592 (637)
                      .+|.|+-++|+..
T Consensus       174 ~~D~Ii~~~p~~~  186 (260)
T d2frna1         174 IADRILMGYVVRT  186 (260)
T ss_dssp             CEEEEEECCCSSG
T ss_pred             CCCEEEECCCCch
Confidence            6999999999754

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=97.54  E-value=0.00011  Score=74.11  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=60.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||||||.||+++.+...|.  +.|++||+++.+.+..+.++..++...  .-++.+|+.+    .+..+..+...
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~ga--~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~----~l~~~~~~~~~  217 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMGGA--MATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFD----YFKYARRHHLT  217 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTTB--SEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHH----HHHHHHHTTCC
T ss_pred             CCCceeecCCCCcHHHHHHHhCCC--ceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHH----HHHHHHhhcCC
Confidence            467899999999999999888886  458899999999999998886432211  1234555542    23333334457


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      ||+||-=|||=+
T Consensus       218 fD~Ii~DPP~f~  229 (317)
T d2b78a2         218 YDIIIIDPPSFA  229 (317)
T ss_dssp             EEEEEECCCCC-
T ss_pred             CCEEEEcChhhc
Confidence            999999999543

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.41  E-value=0.00013  Score=73.64  Aligned_cols=82  Identities=16%  Similarity=0.117  Sum_probs=60.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||||||.||+++.+-+.|.  + |++||+++.+....+.+...++...  .-++.+|+.++    +.....+-..
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~GA--~-V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~----l~~~~~~~~~  204 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAGA--E-VTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKF----IQREERRGST  204 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC--E-EEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHH----HHHHHHHTCC
T ss_pred             CCCeEEEecCCCcHHHHHHHhCCC--e-EEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHh----HHHHhhcCCC
Confidence            467999999999999999999996  3 6799999999999988776433221  22456777544    2222333467


Q ss_pred             ccEEEEcCCCC
Q 006634          581 IDFVICQNSVP  591 (637)
Q Consensus       581 ~DLVIGGpPCQ  591 (637)
                      ||+||-=||+=
T Consensus       205 fD~IilDPP~f  215 (309)
T d2igta1         205 YDIILTDPPKF  215 (309)
T ss_dssp             BSEEEECCCSE
T ss_pred             CCEEEECCCcc
Confidence            99999999963

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.33  E-value=0.00012  Score=67.78  Aligned_cols=80  Identities=16%  Similarity=0.074  Sum_probs=54.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+|||||||.|.+.+-.-.-|..  -|+.||.|..++++++.+....+...  ..+...|+.+.-     ......+.
T Consensus        43 ~~~~vLDlFaGsG~~glEalSRGA~--~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l-----~~~~~~~~  115 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSRQAK--KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL-----KQPQNQPH  115 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTTCS--EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT-----TSCCSSCC
T ss_pred             ccceEeecccCccceeeeeeeecce--eeEEeecccchhhhHhhHHhhhcccccccccccccccccc-----cccccCCc
Confidence            4578999999999998777788874  58899999999999999876543211  112223321110     01112356


Q ss_pred             ccEEEEcCC
Q 006634          581 IDFVICQNS  589 (637)
Q Consensus       581 ~DLVIGGpP  589 (637)
                      ||||+--||
T Consensus       116 fDlIFlDPP  124 (183)
T d2ifta1         116 FDVVFLDPP  124 (183)
T ss_dssp             EEEEEECCC
T ss_pred             ccEEEechh
Confidence            999999999

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=97.06  E-value=0.00045  Score=50.43  Aligned_cols=39  Identities=23%  Similarity=0.199  Sum_probs=33.1

Q ss_pred             chhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634           75 GLHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  115 (637)
Q Consensus        75 s~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~  115 (637)
                      +.++.-++.|++|||+++++.+|+++|.=+  +++-+++|+
T Consensus         2 tpk~~ai~eL~~MGF~e~~A~~AL~k~~wn--leaAtN~LL   40 (43)
T d2g3qa1           2 TPKSLAVEELSGMGFTEEEAHNALEKCNWD--LEAATNFLL   40 (43)
T ss_dssp             CHHHHHHHHHHTTTSCHHHHHHHHHHHTSC--HHHHHHHHH
T ss_pred             CcHHHHHHHHHhcCCCHHHHHHHHHHcCCC--HHHHHHHHH
Confidence            457788999999999999999999999875  467777776

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00063  Score=53.67  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=36.4

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ...+.+..|+.|||+++.+.+|+..||-+  ++.-+|+|+++.
T Consensus        18 ~de~~v~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Lls~~   58 (63)
T d1wgna_          18 SERQCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            34678899999999999999999999974  699999999874

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.0011  Score=66.17  Aligned_cols=80  Identities=16%  Similarity=0.154  Sum_probs=56.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||||||+|.+++.|.+.+   +-|++||+++.+.+..+.+....+-....++.+|+.+.-...    ......+|
T Consensus       212 ~~~~vlDLycG~G~fsl~La~~~---~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~----~~~~~~~d  284 (358)
T d1uwva2         212 PEDRVLDLFCGMGNFTLPLATQA---ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ----PWAKNGFD  284 (358)
T ss_dssp             TTCEEEEESCTTTTTHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS----GGGTTCCS
T ss_pred             CCceEEEecccccccchhccccc---cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhh----hhhhccCc
Confidence            34679999999999999998865   458999999999998887765433222334556665432211    12235689


Q ss_pred             EEEEcCC
Q 006634          583 FVICQNS  589 (637)
Q Consensus       583 LVIGGpP  589 (637)
                      +||==||
T Consensus       285 ~vilDPP  291 (358)
T d1uwva2         285 KVLLDPA  291 (358)
T ss_dssp             EEEECCC
T ss_pred             eEEeCCC
Confidence            9999998

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00059  Score=49.57  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=32.9

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHH
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITA  116 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a  116 (637)
                      +.++.+..|+.|||+++.|.+|+..++-+  ++.=+|+|++
T Consensus         3 ~~e~~i~~L~~MGF~~~~a~~AL~~~~~N--~e~A~~~LlS   41 (41)
T d1oqya1           3 EYETMLTEIMSMGYERERVVAALRASYNN--PHRAVEYLLT   41 (41)
T ss_dssp             THHHHHHHHHTTTCCSHHHHHHHHHSCSS--TTHHHHTTTT
T ss_pred             hHHHHHHHHHHcCCCHHHHHHHHHHhCCC--HHHHHHHHhC
Confidence            45678999999999999999999999864  3777887763

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.0009  Score=50.75  Aligned_cols=39  Identities=23%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHh
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAA  117 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~  117 (637)
                      +..+..|+.|||+++.+.+|+...|..+ ++.-+|.|+++
T Consensus        13 ~~~l~~L~~MGF~~~~a~~AL~~t~n~~-ve~A~~WLl~H   51 (51)
T d2cpwa1          13 GSALDVLLSMGFPRARAQKALASTGGRS-VQTACDWLFSH   51 (51)
T ss_dssp             CCHHHHHHHHTCCHHHHHHHHHHTTTSC-HHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHcC
Confidence            3467899999999999999999999644 69999999864

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.44  E-value=0.0014  Score=52.91  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ...+.+..|+.|||+++.+..|++.|+-+  ++.-+|+|+..+.
T Consensus        28 ~~ee~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          28 ASEEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG   69 (73)
T ss_dssp             CCHHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred             cCHHHHHHHHHhCCCHHHHHHHHHHhCCC--HHHHHHHHHhCCC
Confidence            45678999999999999999999999995  6999999998764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.39  E-value=0.0012  Score=64.45  Aligned_cols=73  Identities=14%  Similarity=0.180  Sum_probs=53.2

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ...+-+|||+.||.|.+++++.++|.  + |++||+|+.+.+..+.+.... +....+..+|+...         ...+.
T Consensus       118 ~~~g~~VLDiGcGsG~l~i~aa~~g~--~-V~gvDis~~av~~A~~na~~n-~~~~~~~~~d~~~~---------~~~~~  184 (254)
T d2nxca1         118 LRPGDKVLDLGTGSGVLAIAAEKLGG--K-ALGVDIDPMVLPQAEANAKRN-GVRPRFLEGSLEAA---------LPFGP  184 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTC--E-EEEEESCGGGHHHHHHHHHHT-TCCCEEEESCHHHH---------GGGCC
T ss_pred             cCccCEEEEcccchhHHHHHHHhcCC--E-EEEEECChHHHHHHHHHHHHc-CCceeEEecccccc---------ccccc
Confidence            34567999999999999999999996  3 679999999999988876543 32223344554321         12368


Q ss_pred             ccEEEE
Q 006634          581 IDFVIC  586 (637)
Q Consensus       581 ~DLVIG  586 (637)
                      ||+|+.
T Consensus       185 fD~V~a  190 (254)
T d2nxca1         185 FDLLVA  190 (254)
T ss_dssp             EEEEEE
T ss_pred             cchhhh
Confidence            999985

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.34  E-value=0.0037  Score=50.44  Aligned_cols=41  Identities=20%  Similarity=0.296  Sum_probs=36.0

Q ss_pred             hhhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           76 LHIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        76 ~~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ...+.+..|+.|||+++.|.+|+..||-+  ++.=+++|++..
T Consensus        28 ~d~~~i~~L~~MGF~~~~a~~AL~~~~~n--~e~Av~~Lls~~   68 (73)
T d1wiva_          28 IDQSSVDTLLSFGFAEDVARKALKASGGD--IEKATDWVFNNS   68 (73)
T ss_dssp             SCHHHHHHHHHHTCCHHHHHHHHHHTTSC--HHHHHHHHHHSC
T ss_pred             CCHHHHHHHHhcCCCHHHHHHHHHHcCCC--HHHHHHHHHcCC
Confidence            34578999999999999999999999973  699999999863

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0025  Score=49.93  Aligned_cols=41  Identities=15%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      ..+.+..|+.|||+++.+.+|+..+|-  .++.-+++|+....
T Consensus         9 d~~~v~~L~~MGF~~~~a~~AL~~~~~--~~e~A~~wL~~~~~   49 (63)
T d1wjia_           9 DEKALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSNK   49 (63)
T ss_dssp             CHHHHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCCC
Confidence            456889999999999999999999985  47999999999843

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.15  E-value=0.0026  Score=50.14  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=35.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      +.+.+|+.|||+++.+.+|+..+|..+ ++.-+++|+++..
T Consensus        11 ~~l~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h~~   50 (64)
T d1whca_          11 TALESLIEMGFPRGRAEKALALTGNQG-IEAAMDWLMEHED   50 (64)
T ss_dssp             CHHHHHHTTTCCHHHHHHHHHHHTSCC-HHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCCC-HHHHHHHHHHCCC
Confidence            367899999999999999999998854 6999999999753

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.14  E-value=0.0051  Score=59.40  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ++-+||||-||.|.++..|.+.|++   |++||+++...+..+....... ........++.+++...+.......+.||
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~---v~gvD~S~~ml~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~fd  131 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFS---VTSVDASDKMLKYALKERWNRR-KEPAFDKWVIEEANWLTLDKDVPAGDGFD  131 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTT-TSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCe---eeeccCchHHHHHHHHHHHhcc-cccccceeeeeeccccccccccCCCCCce
Confidence            4568999999999999999999974   6899999998877766544332 12122334455544433332222235789


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus       132 ~v~~  135 (292)
T d1xvaa_         132 AVIC  135 (292)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.12  E-value=0.0046  Score=56.50  Aligned_cols=76  Identities=12%  Similarity=0.041  Sum_probs=53.0

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC--CccccccccccChhhHHHhhhccCC
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG--ELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g--~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+-+|||++||.|.+++.+.+.+-   -|.++|+++.+....+.+....+-..  ..+..+|+.+--         ..+.
T Consensus        52 ~~~~VLDiGcG~G~~~~~la~~~~---~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~---------~~~~  119 (194)
T d1dusa_          52 KDDDILDLGCGYGVIGIALADEVK---STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV---------KDRK  119 (194)
T ss_dssp             TTCEEEEETCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC---------TTSC
T ss_pred             CCCeEEEEeecCChhHHHHHhhcc---ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhh---------ccCC
Confidence            357899999999999999988774   36789999999998887665433221  112334543211         1247


Q ss_pred             ccEEEEcCCC
Q 006634          581 IDFVICQNSV  590 (637)
Q Consensus       581 ~DLVIGGpPC  590 (637)
                      ||+|+.-+|.
T Consensus       120 fD~Ii~~~p~  129 (194)
T d1dusa_         120 YNKIITNPPI  129 (194)
T ss_dssp             EEEEEECCCS
T ss_pred             ceEEEEcccE
Confidence            9999987774

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0038  Score=61.54  Aligned_cols=84  Identities=10%  Similarity=0.052  Sum_probs=59.0

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ...+.+||||.||.|.+.+++...--. ..++++|+++.|.++-+.+-...+-....+..+|+.+       .+  ....
T Consensus       106 ~~~~~~vlDlGtGSG~I~i~la~~~p~-~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~-------~~--~~~~  175 (274)
T d2b3ta1         106 PEQPCRILDLGTGTGAIALALASERPD-CEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFS-------AL--AGQQ  175 (274)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHHCTT-SEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTG-------GG--TTCC
T ss_pred             cccccceeeeehhhhHHHHHHHhhCCc-ceeeeccchhHHHhHHHHHHHHhCcccceeeeccccc-------cc--CCCc
Confidence            345689999999999998888765433 3578999999999998887654432222244555432       11  1247


Q ss_pred             ccEEEEcCCCCCcC
Q 006634          581 IDFVICQNSVPQIP  594 (637)
Q Consensus       581 ~DLVIGGpPCQ~FS  594 (637)
                      ||+|+.-||.=+.+
T Consensus       176 fDlIvsNPPYi~~~  189 (274)
T d2b3ta1         176 FAMIVSNPPYIDEQ  189 (274)
T ss_dssp             EEEEEECCCCBCTT
T ss_pred             eeEEEecchhhhhh
Confidence            99999999987654

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0026  Score=48.01  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=34.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhh
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQ  118 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q  118 (637)
                      ..+..|+.|||+++-+.+|+...|..+ ++.=++.|++++
T Consensus         4 ~~v~~L~~MGF~~~~a~~Al~~t~n~~-ve~A~~Wl~~h~   42 (51)
T d2crna1           4 SLLEPLLAMGFPVHTALKALAATGRKT-AEEALAWLHDHC   42 (51)
T ss_dssp             SSHHHHHHTSCCHHHHHHHHHHHTSCC-HHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHCCCC-HHHHHHHHHHcC
Confidence            457899999999999999999998865 699999999985

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=95.70  E-value=0.0082  Score=58.95  Aligned_cols=80  Identities=14%  Similarity=-0.003  Sum_probs=51.8

Q ss_pred             CCCcccccCCCCChHHHHHH----HcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLH----RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~----~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+|+|.+||.||+-+++.    ..+..-..++++|+|+.+.++.+.+........ ....+|....         ...
T Consensus       117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~-~~~~~d~~~~---------~~~  186 (328)
T d2f8la1         117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKM-TLLHQDGLAN---------LLV  186 (328)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCC-EEEESCTTSC---------CCC
T ss_pred             CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhh-hhhccccccc---------ccc
Confidence            46889999999999988764    234333357899999998887665544332111 1223332111         123


Q ss_pred             CCccEEEEcCCCCC
Q 006634          579 GSIDFVICQNSVPQ  592 (637)
Q Consensus       579 g~~DLVIGGpPCQ~  592 (637)
                      +.||+|+|=||...
T Consensus       187 ~~fD~vi~NPPy~~  200 (328)
T d2f8la1         187 DPVDVVISDLPVGY  200 (328)
T ss_dssp             CCEEEEEEECCCSE
T ss_pred             ccccccccCCCCCC
Confidence            57999999999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.61  E-value=0.011  Score=53.71  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCC-ccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||++||.|++++.+-+.+-   -|++||+++.+.+..+.+....+.... .++.+|..++        ......|
T Consensus        33 ~g~~VLDiGcGsG~~s~~lA~~~~---~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--------~~~~~~~  101 (186)
T d1l3ia_          33 KNDVAVDVGCGTGGVTLELAGRVR---RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--------LCKIPDI  101 (186)
T ss_dssp             TTCEEEEESCTTSHHHHHHHTTSS---EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--------HTTSCCE
T ss_pred             CCCEEEEEECCeEcccccccccce---EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--------ccccCCc
Confidence            367899999999999999877653   478999999999999888765432222 2344554322        2234679


Q ss_pred             cEEEEcC
Q 006634          582 DFVICQN  588 (637)
Q Consensus       582 DLVIGGp  588 (637)
                      |+|+.+.
T Consensus       102 D~v~~~~  108 (186)
T d1l3ia_         102 DIAVVGG  108 (186)
T ss_dssp             EEEEESC
T ss_pred             CEEEEeC
Confidence            9888553

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.53  E-value=0.011  Score=54.66  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=54.4

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ..-+|||+=||.|..+..|.++|++   |++||+++......++.....+. ...+..+|+.++..+         +.||
T Consensus        41 ~~~~iLDiGcGtG~~~~~l~~~~~~---v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~---------~~fD  107 (251)
T d1wzna1          41 EVRRVLDLACGTGIPTLELAERGYE---VVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFK---------NEFD  107 (251)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCC---------SCEE
T ss_pred             CCCEEEEeCCCCCccchhhcccceE---EEEEeeccccccccccccccccc-cchheehhhhhcccc---------cccc
Confidence            3457999999999999999999974   67999999998888776544332 233567888887632         3689


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus       108 ~I~~  111 (251)
T d1wzna1         108 AVTM  111 (251)
T ss_dssp             EEEE
T ss_pred             hHhh
Confidence            8875

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.45  E-value=0.018  Score=47.49  Aligned_cols=42  Identities=21%  Similarity=0.147  Sum_probs=36.7

Q ss_pred             hhHHHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHHHhhh
Q 006634           77 HIEKRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFITAAQI  119 (637)
Q Consensus        77 ~~~~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~a~q~  119 (637)
                      +.+.+..|+.|||+++.+.+|+..-|..+ ++.-+++|++++-
T Consensus        29 d~~~v~~L~~MGF~~~~a~~AL~~t~n~~-~e~A~~Wl~~h~~   70 (84)
T d1veka_          29 NEEIVAQLVSMGFSQLHCQKAAINTSNAG-VEEAMNWLLSHMD   70 (84)
T ss_dssp             CHHHHHHHHHHTCCHHHHHHHHHHTTTCC-HHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHcCCC-HHHHHHHHHHcCC
Confidence            45788999999999999999999987754 6999999998853

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.06  E-value=0.017  Score=56.33  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=51.2

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccE
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDF  583 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DL  583 (637)
                      +-+||||-||.|.+++.+.++|.  +.|+++|+++.+..+.+....+.......++.+|+.++...        ...+|+
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga--~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~--------~~~~D~  105 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGA--KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLP--------VEKVDV  105 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC--SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCS--------CSCEEE
T ss_pred             cCEEEEECCCCCHHHHHHHHcCC--CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCc--------cccceE
Confidence            45799999999999999999997  46899999998876554432222122223456777766421        247999


Q ss_pred             EEE
Q 006634          584 VIC  586 (637)
Q Consensus       584 VIG  586 (637)
                      |+.
T Consensus       106 Ivs  108 (311)
T d2fyta1         106 IIS  108 (311)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            985

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=95.05  E-value=0.014  Score=54.49  Aligned_cols=79  Identities=15%  Similarity=0.087  Sum_probs=57.3

Q ss_pred             ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634          495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      ..++..-+.+-+|||+=||.|.++..|.++|.+   +++||+++...+..+......+. ...++.+|+.++..      
T Consensus        29 ~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~~---v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~------   98 (246)
T d1y8ca_          29 EKCVENNLVFDDYLDLACGTGNLTENLCPKFKN---TWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI------   98 (246)
T ss_dssp             HHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSE---EEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC------
T ss_pred             HHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCCc---cEeeccchhhhhhccccccccCc-cceeeccchhhhcc------
Confidence            334444455568999999999999999999975   57999999988777665443322 23356788887652      


Q ss_pred             hhccCCccEEEE
Q 006634          575 IHKLGSIDFVIC  586 (637)
Q Consensus       575 ~~~~g~~DLVIG  586 (637)
                         .+.||+|+.
T Consensus        99 ---~~~fD~i~~  107 (246)
T d1y8ca_          99 ---NRKFDLITC  107 (246)
T ss_dssp             ---SCCEEEEEE
T ss_pred             ---cccccccce
Confidence               247999883

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.00  E-value=0.013  Score=55.23  Aligned_cols=79  Identities=14%  Similarity=0.132  Sum_probs=53.5

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhh
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIH  576 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~  576 (637)
                      +.+.+.+-+||||=||.||...-+.+.|+.  -|+++|+++.+.+..+..+...+.. ...+..+|+......       
T Consensus        19 ~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~--~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~-------   89 (252)
T d1ri5a_          19 RLYTKRGDSVLDLGCGKGGDLLKYERAGIG--EYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD-------   89 (252)
T ss_dssp             HHHCCTTCEEEEETCTTTTTHHHHHHHTCS--EEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC-------
T ss_pred             HHhCCCcCEEEEecccCcHHHHHHHHcCCC--eEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccc-------
Confidence            344556789999999999999999998873  4789999999988777655433221 222456676443210       


Q ss_pred             ccCCccEEE
Q 006634          577 KLGSIDFVI  585 (637)
Q Consensus       577 ~~g~~DLVI  585 (637)
                      ..+.||+|+
T Consensus        90 ~~~~fD~V~   98 (252)
T d1ri5a_          90 LGKEFDVIS   98 (252)
T ss_dssp             CSSCEEEEE
T ss_pred             ccccceEEE
Confidence            123577776

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.94  E-value=0.025  Score=50.93  Aligned_cols=78  Identities=21%  Similarity=0.300  Sum_probs=54.7

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhc
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHK  577 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~  577 (637)
                      +.+.+.+-+||||=||.|.++..|.+.|.+   ++++|+++...+..+....+.+. ....+..|+.++.-        .
T Consensus        32 ~~~l~~~~~ILDiGcG~G~~~~~la~~~~~---v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~--------~   99 (226)
T d1ve3a1          32 MKYMKKRGKVLDLACGVGGFSFLLEDYGFE---VVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSF--------E   99 (226)
T ss_dssp             HHSCCSCCEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCS--------C
T ss_pred             HHhcCCCCEEEEECCCcchhhhhHhhhhcc---cccccccccchhhhhhhhccccc-cccccccccccccc--------c
Confidence            334455679999999999999999999863   68999999998887765444322 22234567766542        1


Q ss_pred             cCCccEEEEc
Q 006634          578 LGSIDFVICQ  587 (637)
Q Consensus       578 ~g~~DLVIGG  587 (637)
                      .+.||+|+.-
T Consensus       100 ~~~fD~I~~~  109 (226)
T d1ve3a1         100 DKTFDYVIFI  109 (226)
T ss_dssp             TTCEEEEEEE
T ss_pred             CcCceEEEEe
Confidence            2468888753

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=94.32  E-value=0.035  Score=50.55  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+||||=||.|.++..+.+.|-   -|+++|+++...+..+......+.+...+..+|+.++.-        ..+.||
T Consensus        15 ~~~rVLDiGcG~G~~~~~l~~~~~---~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~--------~~~~fD   83 (231)
T d1vl5a_          15 GNEEVLDVATGGGHVANAFAPFVK---KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPF--------TDERFH   83 (231)
T ss_dssp             SCCEEEEETCTTCHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCS--------CTTCEE
T ss_pred             CcCEEEEecccCcHHHHHHHHhCC---EEEEEECCHHHHhhhhhcccccccccccccccccccccc--------cccccc
Confidence            467999999999999999999985   368999999887766654433333333356677776641        124677


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus        84 ~v~~   87 (231)
T d1vl5a_          84 IVTC   87 (231)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            7763

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.32  E-value=0.03  Score=54.91  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=49.3

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      +-+||||.||.|.+++-+.++|..  .|++||+++.+..+.+. -...+... ..++.+|+.++..        ....+|
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga~--~V~avd~s~~~~~a~~~-~~~n~~~~~v~~~~~~~~~~~~--------~~~~~D  102 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGAR--KVIGIECSSISDYAVKI-VKANKLDHVVTIIKGKVEEVEL--------PVEKVD  102 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCS--EEEEEECSTTHHHHHHH-HHHTTCTTTEEEEESCTTTCCC--------SSSCEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhCCC--EEEEEcCcHHHhhhhhH-HHHhCCccccceEeccHHHccc--------ccceeE
Confidence            457999999999999999999963  57899999876544332 22222222 2245677776653        124799


Q ss_pred             EEEEc
Q 006634          583 FVICQ  587 (637)
Q Consensus       583 LVIGG  587 (637)
                      +|+.-
T Consensus       103 ~ivs~  107 (316)
T d1oria_         103 IIISE  107 (316)
T ss_dssp             EEEEC
T ss_pred             EEeee
Confidence            99854

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.28  E-value=0.031  Score=50.47  Aligned_cols=74  Identities=20%  Similarity=0.260  Sum_probs=52.3

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  584 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  584 (637)
                      -+||||=||.|.....|.+.|++   |++||+++.+.+..+.+....+-....+...|+.++..+         +.||+|
T Consensus        32 grvLDiGcG~G~~~~~la~~g~~---v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~---------~~fD~I   99 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAANGYD---VTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFD---------GEYDFI   99 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHTTCE---EEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCC---------CCEEEE
T ss_pred             CcEEEECCCCCHHHHHHHHHhhh---hccccCcHHHHHHHHHHhhhccccchhhhheeccccccc---------ccccEE
Confidence            38999999999999999999985   679999999988887765443222222344565554421         468888


Q ss_pred             EEcCCC
Q 006634          585 ICQNSV  590 (637)
Q Consensus       585 IGGpPC  590 (637)
                      +.....
T Consensus       100 ~~~~~~  105 (198)
T d2i6ga1         100 LSTVVM  105 (198)
T ss_dssp             EEESCG
T ss_pred             EEeeee
Confidence            865543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.26  E-value=0.035  Score=54.62  Aligned_cols=73  Identities=19%  Similarity=0.223  Sum_probs=49.5

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      +-+||||-||.|.+++-+.++|..  .|+++|.++.+..+ +..-...+... ..++.+|+.++.-.        ...+|
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~Ga~--~V~avd~s~~~~~a-~~~~~~~~~~~~i~~i~~~~~~l~~~--------~~~~D  107 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHGAK--HVIGVDMSSIIEMA-KELVELNGFSDKITLLRGKLEDVHLP--------FPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTCCS--EEEEEESSTHHHHH-HHHHHHTTCTTTEEEEESCTTTSCCS--------SSCEE
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCCC--EEEEEeCCHHHHHH-HHHHHHhCccccceEEEeehhhccCc--------cccee
Confidence            568999999999999999999974  68899999865333 33222333222 22456777766421        24699


Q ss_pred             EEEEc
Q 006634          583 FVICQ  587 (637)
Q Consensus       583 LVIGG  587 (637)
                      +|+.-
T Consensus       108 ~i~se  112 (328)
T d1g6q1_         108 IIISE  112 (328)
T ss_dssp             EEEEC
T ss_pred             EEEEE
Confidence            99863

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.16  E-value=0.02  Score=46.01  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=35.5

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhccc
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQI  191 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq~  191 (637)
                      .+.+..|+.|||+++++..|+..|+-+  |+.-+|+++..+.
T Consensus        30 ee~i~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Ll~~~~   69 (73)
T d1vg5a_          30 EEQIQKLVAMGFDRTQVEVALAAADDD--LTVAVEILMSQSG   69 (73)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHTSC--HHHHHHHHHTCSC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHhCCC--HHHHHHHHHhCCC
Confidence            356779999999999999999999996  8999999988774

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.13  E-value=0.024  Score=51.66  Aligned_cols=75  Identities=17%  Similarity=0.208  Sum_probs=55.8

Q ss_pred             ccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHh
Q 006634          495 SVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESL  574 (637)
Q Consensus       495 svLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l  574 (637)
                      +.++.+.+.+.+|||+=||.|.+..-|.+.|.+   |+++|+++...+..+...      ...++.+|+.++.-      
T Consensus        34 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~---v~giD~s~~~l~~a~~~~------~~~~~~~~~~~l~~------   98 (246)
T d2avna1          34 SFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE---VVLVDPSKEMLEVAREKG------VKNVVEAKAEDLPF------   98 (246)
T ss_dssp             HHHHHHCCSCCEEEEETCTTCHHHHHHHTTTCE---EEEEESCHHHHHHHHHHT------CSCEEECCTTSCCS------
T ss_pred             HHHHHhcCCCCEEEEECCCCchhcccccccceE---EEEeeccccccccccccc------cccccccccccccc------
Confidence            335566677889999999999999999999974   689999999988776531      12245677777642      


Q ss_pred             hhccCCccEEEE
Q 006634          575 IHKLGSIDFVIC  586 (637)
Q Consensus       575 ~~~~g~~DLVIG  586 (637)
                        ..+.||+|+.
T Consensus        99 --~~~~fD~ii~  108 (246)
T d2avna1          99 --PSGAFEAVLA  108 (246)
T ss_dssp             --CTTCEEEEEE
T ss_pred             --ccccccceee
Confidence              1257999874

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=94.10  E-value=0.022  Score=52.63  Aligned_cols=67  Identities=13%  Similarity=0.078  Sum_probs=47.6

Q ss_pred             hhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccccccccc
Q 006634          492 YHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQAL  566 (637)
Q Consensus       492 ~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~L  566 (637)
                      |.++.+..++. +-+|||+=||.|.+...|.+.|.+   |++||+++......+....    .+..+..+|+.++
T Consensus        10 ~~~~~~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~~---v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~   76 (225)
T d2p7ia1          10 FMVRAFTPFFR-PGNLLELGSFKGDFTSRLQEHFND---ITCVEASEEAISHAQGRLK----DGITYIHSRFEDA   76 (225)
T ss_dssp             HHHHHHGGGCC-SSCEEEESCTTSHHHHHHTTTCSC---EEEEESCHHHHHHHHHHSC----SCEEEEESCGGGC
T ss_pred             HHHHHhhhhCC-CCcEEEEeCCCcHHHHHHHHcCCe---EEEEeCcHHHhhhhhcccc----ccccccccccccc
Confidence            44555566665 448999999999999999999964   6899999998877765321    1222445565544

>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-associated protein 1, UBAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.07  E-value=0.014  Score=45.66  Aligned_cols=38  Identities=26%  Similarity=0.429  Sum_probs=33.5

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      +.+..|+.|||++++|..|+.+||-+  ++.-+|.++.-.
T Consensus        21 ~~v~~L~~MGF~~~~a~~AL~~~~~n--~e~A~~~Lls~~   58 (63)
T d1wgna_          21 QCVETVVNMGYSYECVLRAMKKKGEN--IEQILDYLFAHS   58 (63)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHCSC--HHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHcCCC--HHHHHHHHHhCC
Confidence            56679999999999999999999985  888899988754

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.04  E-value=0.021  Score=52.60  Aligned_cols=74  Identities=19%  Similarity=0.118  Sum_probs=50.1

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+||||-||.|++...|...+.  .-|.+||+++......+......+.....++.+|+.++...        .+.||
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~~--~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~--------~~~fD  129 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPLF--REVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPE--------PDSYD  129 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTC--SEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCC--------SSCEE
T ss_pred             CCCEEEEeccCCCHhhHHHHHhcC--CEEEEeecCHHHhhccccccccccccccccccccccccccc--------ccccc
Confidence            356899999999999988765554  35789999999888777655433222223456777776531        24677


Q ss_pred             EEEE
Q 006634          583 FVIC  586 (637)
Q Consensus       583 LVIG  586 (637)
                      +|+.
T Consensus       130 ~I~~  133 (222)
T d2ex4a1         130 VIWI  133 (222)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            7763

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=94.00  E-value=0.041  Score=50.81  Aligned_cols=77  Identities=13%  Similarity=0.218  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+||||=||.|.++..|.+.|.   .+++||+++...+..+.+....+.....+..+|+.++.-        ..+.||
T Consensus        16 ~~~rILDiGcGtG~~~~~la~~~~---~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~--------~~~~fD   84 (234)
T d1xxla_          16 AEHRVLDIGAGAGHTALAFSPYVQ---ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF--------PDDSFD   84 (234)
T ss_dssp             TTCEEEEESCTTSHHHHHHGGGSS---EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS--------CTTCEE
T ss_pred             CCCEEEEeCCcCcHHHHHHHHhCC---eEEEEeCChhhhhhhhhhhcccccccccccccccccccc--------cccccc
Confidence            478999999999999999999885   368999999877766655433322233456778776542        125799


Q ss_pred             EEEEcCCC
Q 006634          583 FVICQNSV  590 (637)
Q Consensus       583 LVIGGpPC  590 (637)
                      +|+...-.
T Consensus        85 ~v~~~~~l   92 (234)
T d1xxla_          85 IITCRYAA   92 (234)
T ss_dssp             EEEEESCG
T ss_pred             eeeeecee
Confidence            99875443

>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Endocytic protein Ede1, YBL047C
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=93.90  E-value=0.017  Score=41.96  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHhhCCC
Q 006634          153 TLQLLEMGFSENQVSLAIEKFGSK  176 (637)
Q Consensus       153 ~~~L~~MGfseeEas~Ai~r~G~d  176 (637)
                      +..|+.|||+++||..|+++|.=+
T Consensus         8 i~eL~~MGF~e~~A~~AL~k~~wn   31 (43)
T d2g3qa1           8 VEELSGMGFTEEEAHNALEKCNWD   31 (43)
T ss_dssp             HHHHHTTTSCHHHHHHHHHHHTSC
T ss_pred             HHHHHhcCCCHHHHHHHHHHcCCC
Confidence            458999999999999999999765

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.51  E-value=0.03  Score=50.70  Aligned_cols=73  Identities=8%  Similarity=-0.009  Sum_probs=47.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||.+||.|+|-.++.+.-..-..++++|+++.+.+..         ....++.+|-....         ....+|
T Consensus        19 ~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~---------~~~~fd   80 (223)
T d2ih2a1          19 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWE---------PGEAFD   80 (223)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCC---------CSSCEE
T ss_pred             CcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhccc---------cccccc
Confidence            457899999999999888865433334588999998863221         11123344432221         235799


Q ss_pred             EEEEcCCCCCc
Q 006634          583 FVICQNSVPQI  593 (637)
Q Consensus       583 LVIGGpPCQ~F  593 (637)
                      ++++-||....
T Consensus        81 ~ii~npP~~~~   91 (223)
T d2ih2a1          81 LILGNPPYGIV   91 (223)
T ss_dssp             EEEECCCCCCB
T ss_pred             eecccCccccc
Confidence            99999998554

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.13  E-value=0.094  Score=51.28  Aligned_cols=88  Identities=10%  Similarity=0.154  Sum_probs=58.9

Q ss_pred             CCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+-+|||++||.||=+..+..+ +=. -.++|+|+++.-.+.++.+....+.....+...|-..+....     ...+.|
T Consensus        94 ~g~~vLD~cAapGgKt~~la~l~~~~-~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~-----~~~~~f  167 (293)
T d2b9ea1          94 PGSHVIDACAAPGNKTSHLAALLKNQ-GKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSD-----PRYHEV  167 (293)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTC-----GGGTTE
T ss_pred             ccceEEecccchhhHHHHHHHHhcCC-ceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccc-----ccccee
Confidence            3678999999999977766543 211 247899999998888888776554333334445665554421     234789


Q ss_pred             cEEEEcCCCCCcCcc
Q 006634          582 DFVICQNSVPQIPNS  596 (637)
Q Consensus       582 DLVIGGpPCQ~FS~s  596 (637)
                      |.|+-=+||.+....
T Consensus       168 D~VL~DaPCSg~G~~  182 (293)
T d2b9ea1         168 HYILLDPSCSGSGMP  182 (293)
T ss_dssp             EEEEECCCCCC----
T ss_pred             eEEeecCcccchhhh
Confidence            999999999988753

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=92.77  E-value=0.087  Score=51.40  Aligned_cols=82  Identities=16%  Similarity=0.227  Sum_probs=56.1

Q ss_pred             CCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhccCCcc
Q 006634          504 GLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ..+++|+.||.|...+++.... +. .|+++||++.|..+-+.|-.+.+-.... ++.+|..+.       +....+.||
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~-~~-~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~-------~~~~~~~fD  181 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFS-DA-IVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-------FKEKFASIE  181 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHS-SC-EEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-------GGGGTTTCC
T ss_pred             ccEEEEeeeeeehhhhhhhhcc-cc-eeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccc-------cccccCccc
Confidence            3579999999998887776543 32 4789999999999998876554322211 233444322       112347899


Q ss_pred             EEEEcCCCCCcC
Q 006634          583 FVICQNSVPQIP  594 (637)
Q Consensus       583 LVIGGpPCQ~FS  594 (637)
                      +|+.-||.-+-+
T Consensus       182 lIVsNPPYI~~~  193 (271)
T d1nv8a_         182 MILSNPPYVKSS  193 (271)
T ss_dssp             EEEECCCCBCGG
T ss_pred             EEEEcccccCcc
Confidence            999999998754

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.14  Score=48.78  Aligned_cols=87  Identities=13%  Similarity=0.038  Sum_probs=51.6

Q ss_pred             CCCCcccccCCCCChHHHHH--HHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCc-cccccccccChhhHHHhhhcc
Q 006634          502 PGGLTMLSVFSGIGGAEVTL--HRLGIKLKGVISIETSETNRRILKRWWESSGQTGEL-VQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL--~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l-~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      ...+++|||-||.|...+.|  +.-+.   -++++||++.|.++-+.+-...+-...+ +...+....-...+..  ...
T Consensus        60 ~~~~~~LDiGtGsg~I~~~l~~~~~~~---~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~--~~~  134 (250)
T d2h00a1          60 STLRRGIDIGTGASCIYPLLGATLNGW---YFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKE--ESE  134 (250)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHHCC---EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTT--CCS
T ss_pred             cccceEEEeCCCchHHHHHHHHhCCCc---cccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhh--ccc
Confidence            34588999999999776554  44455   3689999999999988876544322211 1111211111111100  112


Q ss_pred             CCccEEEEcCCCCCc
Q 006634          579 GSIDFVICQNSVPQI  593 (637)
Q Consensus       579 g~~DLVIGGpPCQ~F  593 (637)
                      +.||+|+.=||=-+-
T Consensus       135 ~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         135 IIYDFCMCNPPFFAN  149 (250)
T ss_dssp             CCBSEEEECCCCC--
T ss_pred             CceeEEEecCccccc
Confidence            579999999996543

>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.37  E-value=0.047  Score=43.71  Aligned_cols=39  Identities=26%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             hhhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          150 MEITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       150 ~~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      .+++..|+.|||++++|..|+..||-  .++.=++.|+.-.
T Consensus        30 ~~~i~~L~~MGF~~~~a~~AL~~~~~--n~e~Av~~Lls~~   68 (73)
T d1wiva_          30 QSSVDTLLSFGFAEDVARKALKASGG--DIEKATDWVFNNS   68 (73)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHTTS--CHHHHHHHHHHSC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHcCC--CHHHHHHHHHcCC
Confidence            35677999999999999999999997  4888888888643

>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Tudor domain containing protein 3, TDRD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.053  Score=42.12  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=33.6

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCCCChhhhhhhhhhcc
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSKTPISELADKIFSGQ  190 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~da~i~eLvD~I~Aaq  190 (637)
                      +.+..|+.|||+++.+..|+..|+.  .++.-++.|+.-.
T Consensus        11 ~~v~~L~~MGF~~~~a~~AL~~~~~--~~e~A~~wL~~~~   48 (63)
T d1wjia_          11 KALKHITEMGFSKEASRQALMDNGN--NLEAALNVLLTSN   48 (63)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHTTS--CHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCC--CHHHHHHHHHHCC
Confidence            3456999999999999999999986  7999999999865

>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DNA repair protein Hhr23a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.044  Score=39.37  Aligned_cols=26  Identities=15%  Similarity=0.355  Sum_probs=23.6

Q ss_pred             hhHHHHHhcCCCHHHHHHHHHhhCCC
Q 006634          151 EITLQLLEMGFSENQVSLAIEKFGSK  176 (637)
Q Consensus       151 ~k~~~L~~MGfseeEas~Ai~r~G~d  176 (637)
                      +++..|+.|||++++|..|+..++-+
T Consensus         6 ~~i~~L~~MGF~~~~a~~AL~~~~~N   31 (41)
T d1oqya1           6 TMLTEIMSMGYERERVVAALRASYNN   31 (41)
T ss_dssp             HHHHHHHTTTCCSHHHHHHHHHSCSS
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhCCC
Confidence            56779999999999999999999876

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=92.23  E-value=0.14  Score=48.64  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=52.5

Q ss_pred             CCCCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhcc
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKL  578 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~  578 (637)
                      .+.+.+|||+=||.|++..-|.+ .|..   |++||+++......+.+....+-.. ..++.+|+.++.-        ..
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~~---v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~--------~~  133 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGVS---IDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC--------ED  133 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCE---EEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS--------CT
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCcE---EEEEeccchhhhhhhcccccccccccccccccccccccc--------cc
Confidence            35678999999999999988865 4753   6899999998887777665443221 2245677766642        12


Q ss_pred             CCccEEEE
Q 006634          579 GSIDFVIC  586 (637)
Q Consensus       579 g~~DLVIG  586 (637)
                      +.||+|+.
T Consensus       134 ~sfD~V~~  141 (282)
T d2o57a1         134 NSYDFIWS  141 (282)
T ss_dssp             TCEEEEEE
T ss_pred             cccchhhc
Confidence            46888875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=91.96  E-value=0.12  Score=44.80  Aligned_cols=50  Identities=22%  Similarity=0.118  Sum_probs=41.5

Q ss_pred             hhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHH
Q 006634          493 HLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRW  547 (637)
Q Consensus       493 ~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~  547 (637)
                      +|+.|.  .+.+-+|||+=||.|-..+-|-+.|+.   |+++|+++...+..+..
T Consensus        12 ~~~~l~--~~~~~rvLd~GCG~G~~a~~la~~G~~---V~gvD~S~~~i~~a~~~   61 (201)
T d1pjza_          12 YWSSLN--VVPGARVLVPLCGKSQDMSWLSGQGYH---VVGAELSEAAVERYFTE   61 (201)
T ss_dssp             HHHHHC--CCTTCEEEETTTCCSHHHHHHHHHCCE---EEEEEECHHHHHHHHHH
T ss_pred             HHHHcC--CCCCCEEEEecCcCCHHHHHHHHcCCc---eEeecccHHHHHHHHHH
Confidence            355553  346789999999999999999999985   68999999999888764

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.86  E-value=0.15  Score=47.26  Aligned_cols=91  Identities=21%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             chhhhhccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccC
Q 006634          489 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALT  567 (637)
Q Consensus       489 tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt  567 (637)
                      .++..+..|.  ...+.+|||+=||.|.++..+.+ .|=. -.|+++|+++......+.+....+.....+..+|..+.-
T Consensus        63 ~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~-g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~  139 (213)
T d1dl5a1          63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEK-GLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (213)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             hhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCC-CcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc
Confidence            3455555553  34588999999999999988855 4422 247899999998887777665443333334456665433


Q ss_pred             hhhHHHhhhccCCccEEEEcCCC
Q 006634          568 TKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       568 ~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      .        ..+.||+|+-+..+
T Consensus       140 ~--------~~~~fD~I~~~~~~  154 (213)
T d1dl5a1         140 P--------EFSPYDVIFVTVGV  154 (213)
T ss_dssp             G--------GGCCEEEEEECSBB
T ss_pred             c--------cccchhhhhhhccH
Confidence            2        23579998865543

>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA/UBX 33.3 kDa protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.50  E-value=0.092  Score=40.92  Aligned_cols=31  Identities=23%  Similarity=0.481  Sum_probs=29.4

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||+++.+.||+..+|-.+.+.-+|-||+..
T Consensus        19 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~   49 (64)
T d1whca_          19 MGFPRGRAEKALALTGNQGIEAAMDWLMEHE   49 (64)
T ss_dssp             TTCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHhCCCCHHHHHHHHHHCC
Confidence            9999999999999999889999999999874

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=91.41  E-value=0.078  Score=48.52  Aligned_cols=81  Identities=15%  Similarity=0.106  Sum_probs=52.4

Q ss_pred             CCCCCcccccCCCCChHHHHHH-HcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLH-RLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLG  579 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~-~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g  579 (637)
                      +..+.+||||-|+-||.+..+. +.+-. ..++++|+.+..           ...+..++.+||.+.............+
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~-~~v~~vDl~~~~-----------~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGK-GRIIACDLLPMD-----------PIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTT-CEEEEEESSCCC-----------CCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEeccCCcceEEEEeecccc-ceEEEeeccccc-----------ccCCceEeecccccchhhhhhhhhccCc
Confidence            4567899999999999998554 45543 457899987652           2345556788887644322211112336


Q ss_pred             CccEEE--EcCCCCCc
Q 006634          580 SIDFVI--CQNSVPQI  593 (637)
Q Consensus       580 ~~DLVI--GGpPCQ~F  593 (637)
                      .+|||+  |+|.|++-
T Consensus        88 ~~DlVlSD~ap~~sg~  103 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGT  103 (180)
T ss_dssp             CEEEEEECCCCCCCSC
T ss_pred             ceeEEEecccchhccc
Confidence            799998  56666544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.16  Score=46.88  Aligned_cols=42  Identities=19%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  546 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~  546 (637)
                      +.+-+|||+=||.|-..+-|.+.|++   |++||+++.+.+..+.
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~~---V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGHS---VVGVEISELGIQEFFT   85 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTCE---EEEECSCHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCCc---EEEEeCCHHHHHHHHH
Confidence            35679999999999999999999985   6899999999876654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=0.21  Score=46.23  Aligned_cols=71  Identities=25%  Similarity=0.245  Sum_probs=48.8

Q ss_pred             CCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCCCC-CccccccccccChhhHHHhhhccCCc
Q 006634          504 GLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQTG-ELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       504 ~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g-~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      +-+|||+=||.|++...+.+ .|..   |++||+++......+......+-.. ..++.+|+.++..+         +.|
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~~~~---v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~---------~~f  101 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDHGIT---GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVAN---------EKC  101 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTCCE---EEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCS---------SCE
T ss_pred             CCEEEEEcCCCCHHHHHHHHhcCCE---EEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcccc---------Cce
Confidence            67899999999999988765 5753   6899999998877776554432211 22456777765321         356


Q ss_pred             cEEEE
Q 006634          582 DFVIC  586 (637)
Q Consensus       582 DLVIG  586 (637)
                      |+|+.
T Consensus       102 D~v~~  106 (245)
T d1nkva_         102 DVAAC  106 (245)
T ss_dssp             EEEEE
T ss_pred             eEEEE
Confidence            77664

>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin-protein ligase ubc1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.74  E-value=0.17  Score=38.36  Aligned_cols=27  Identities=15%  Similarity=0.177  Sum_probs=24.2

Q ss_pred             hHHHHHHHhcCCCHHHHHHHHHHhCCC
Q 006634           78 IEKRASLLMMNFSVNEVDFALDKLGKD  104 (637)
Q Consensus        78 ~~~~~~lv~MGF~~eeV~~AI~~~G~d  104 (637)
                      .+.+..|+.||||.+-|.-+++|+|-.
T Consensus        10 ~~~V~~f~~mGF~rdKvI~VLrrlgik   36 (55)
T d1ttea1          10 HDLIDEFESQGFEKDKIVEVLRRLGVK   36 (55)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHhCcC
Confidence            356789999999999999999999975

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=89.61  E-value=0.42  Score=44.97  Aligned_cols=84  Identities=15%  Similarity=0.121  Sum_probs=55.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      ..|.+||||-||.|++..-|.+. |-. =.|++||+++...+.++......  .....+..|......     .......
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~-G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~-----~~~~~~~  143 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWE-GKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEE-----YRALVPK  143 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTT-SEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGG-----GTTTCCC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCccc-----ccccccc
Confidence            35899999999999999888763 422 14789999999988887653321  122234455543322     1112357


Q ss_pred             ccEEEEcCCCCCc
Q 006634          581 IDFVICQNSVPQI  593 (637)
Q Consensus       581 ~DLVIGGpPCQ~F  593 (637)
                      +|+|+-..||.+.
T Consensus       144 vD~i~~d~~~~~~  156 (227)
T d1g8aa_         144 VDVIFEDVAQPTQ  156 (227)
T ss_dssp             EEEEEECCCSTTH
T ss_pred             eEEEEEEccccch
Confidence            8988888777653

>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Suppressor of T-cell receptor signaling 2 (STS-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.56  E-value=0.19  Score=37.37  Aligned_cols=31  Identities=23%  Similarity=0.283  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||++....||+...|-.+.+.-++-|+...
T Consensus        12 MGF~~~~a~~Al~~t~n~~ve~A~~Wl~~h~   42 (51)
T d2crna1          12 MGFPVHTALKALAATGRKTAEEALAWLHDHC   42 (51)
T ss_dssp             TSCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHHCCCCHHHHHHHHHHcC
Confidence            9999999999999999989999999999884

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=89.53  E-value=0.22  Score=47.35  Aligned_cols=69  Identities=12%  Similarity=0.078  Sum_probs=49.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||+=||.|.+...|.+++-.. .++++|+++.+.+..+..     .+...+..+|+.++.-.        .+.||
T Consensus        84 ~~~~iLDiGcG~G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~--------~~sfD  149 (268)
T d1p91a_          84 KATAVLDIGCGEGYYTHAFADALPEI-TTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS--------DTSMD  149 (268)
T ss_dssp             TCCEEEEETCTTSTTHHHHHHTCTTS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC--------TTCEE
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCCC-EEEEecchHhhhhhhhcc-----cccccceeeehhhccCC--------CCCEE
Confidence            56789999999999999999886543 467999999987766542     12233556788776521        24678


Q ss_pred             EEE
Q 006634          583 FVI  585 (637)
Q Consensus       583 LVI  585 (637)
                      +|+
T Consensus       150 ~v~  152 (268)
T d1p91a_         150 AII  152 (268)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            877

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.44  E-value=0.14  Score=36.10  Aligned_cols=27  Identities=15%  Similarity=0.438  Sum_probs=24.7

Q ss_pred             CCCHHHHHHHHHHhCCCCHHHHHHHHH
Q 006634            2 GFSPSLVDKVIEEKGQDNVDLLLETLI   28 (637)
Q Consensus         2 GF~~e~V~KaI~e~Ge~~~d~iLE~Ll   28 (637)
                      ||.++||.+|+++.|-.+.++-||.+-
T Consensus        13 G~D~~m~iral~qt~~rsieaaie~is   39 (41)
T d2cosa1          13 GCDQEMAGRALKQTGSRSIEAALEYIS   39 (41)
T ss_dssp             HCCHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCcccHHHHHHHHh
Confidence            899999999999999999998888764

>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Cbl-interacting protein p70, STS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.12  E-value=0.14  Score=38.37  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIE   29 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Llt   29 (637)
                      |||+++...||+...|-.+.+.-+|-||+
T Consensus        22 MGF~~~~a~~AL~~t~n~~ve~A~~WLl~   50 (51)
T d2cpwa1          22 MGFPRARAQKALASTGGRSVQTACDWLFS   50 (51)
T ss_dssp             HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            99999999999999998889999998885

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=89.01  E-value=0.3  Score=46.79  Aligned_cols=89  Identities=18%  Similarity=0.116  Sum_probs=55.8

Q ss_pred             hhhhhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCC-ccccccccccC
Q 006634          490 LGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGE-LVQIEDIQALT  567 (637)
Q Consensus       490 v~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~-l~~~~DI~~Lt  567 (637)
                      .++.+..| +.. .+.+|||+=||.|++++.|.++ |-. -.|+++|+++...+..+.++........ .+..+|+.+.-
T Consensus        74 ~~~Ii~~l-~i~-pG~rVLEiG~GsG~lt~~la~~v~~~-g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~  150 (250)
T d1yb2a1          74 ASYIIMRC-GLR-PGMDILEVGVGSGNMSSYILYALNGK-GTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFI  150 (250)
T ss_dssp             -------C-CCC-TTCEEEEECCTTSHHHHHHHHHHTTS-SEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCC
T ss_pred             HHHHHHHc-CCC-CcCEEEEeeeeCcHHHHHHHHHhCCC-cEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeeccc
Confidence            34444443 333 4789999999999999998875 422 2578999999988888877654322222 24567776542


Q ss_pred             hhhHHHhhhccCCccEEEEcCCC
Q 006634          568 TKKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       568 ~~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                      .         -+.||.|+-..|.
T Consensus       151 ~---------~~~fD~V~ld~p~  164 (250)
T d1yb2a1         151 S---------DQMYDAVIADIPD  164 (250)
T ss_dssp             C---------SCCEEEEEECCSC
T ss_pred             c---------cceeeeeeecCCc
Confidence            2         1468998866664

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=87.80  E-value=0.26  Score=46.52  Aligned_cols=77  Identities=16%  Similarity=0.059  Sum_probs=52.7

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      ...+|||+=||+|.++..|...++  ..|.+||+++...+..+......  ....+++.|+++++..        .+.+|
T Consensus        93 ~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~~~--~~~~~~~~d~~~~~~~--------~~~fD  160 (254)
T d1xtpa_          93 GTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLP--------PNTYD  160 (254)
T ss_dssp             CCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCC--------SSCEE
T ss_pred             CCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccccc--ccceeEEccccccccC--------CCccc
Confidence            457899999999999988665554  35789999999988887654322  1122456777766531        24688


Q ss_pred             EEEEcCCCC
Q 006634          583 FVICQNSVP  591 (637)
Q Consensus       583 LVIGGpPCQ  591 (637)
                      +|+.....+
T Consensus       161 ~I~~~~vl~  169 (254)
T d1xtpa_         161 LIVIQWTAI  169 (254)
T ss_dssp             EEEEESCGG
T ss_pred             eEEeecccc
Confidence            888655443

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.42  E-value=0.33  Score=49.16  Aligned_cols=45  Identities=18%  Similarity=0.078  Sum_probs=37.8

Q ss_pred             CCCcccccCCCCChHHH-HHHHcCCceeeEEEeecCHHHHHHHHHHhh
Q 006634          503 GGLTMLSVFSGIGGAEV-TLHRLGIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlsl-GL~~aGi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      ++.+|||.|||.|+.++ ....+|.  +-|+++|+|+.+....+.+..
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~--~~V~~nDis~~A~~~i~~N~~   90 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPA--EEVWLNDISEDAYELMKRNVM   90 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSC--SEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCC--CEEEEecCCHHHHHHHHHHHH
Confidence            35789999999999998 4566775  468899999999999998764

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.07  E-value=0.91  Score=41.77  Aligned_cols=83  Identities=18%  Similarity=0.055  Sum_probs=58.5

Q ss_pred             CcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEE
Q 006634          505 LTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFV  584 (637)
Q Consensus       505 l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLV  584 (637)
                      ..|||+=||.|.+.+.+.+..=. ..+++||+++...........+.+-....++.+|++.+.. .+     ..+.+|.|
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~-~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~-~~-----~~~~~d~v  103 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPD-INYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTD-VF-----EPGEVKRV  103 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTT-SEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHH-HC-----CTTSCCEE
T ss_pred             ceEEEEEecCcHHHHHHHHhCCC-CcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhc-cc-----Cchhhhcc
Confidence            45899999999999988877433 3578999999987766655544433334456788876531 11     23578999


Q ss_pred             EEcCCCCCcC
Q 006634          585 ICQNSVPQIP  594 (637)
Q Consensus       585 IGGpPCQ~FS  594 (637)
                      .--+|+.-+.
T Consensus       104 ~i~fp~P~~k  113 (204)
T d2fcaa1         104 YLNFSDPWPK  113 (204)
T ss_dssp             EEESCCCCCS
T ss_pred             ccccccccch
Confidence            8888877665

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.92  E-value=0.82  Score=44.78  Aligned_cols=85  Identities=11%  Similarity=0.030  Sum_probs=56.9

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+|||++||.||=+..+..+--.--.++|+|+++.-.+.++......+.....+...|-..+.        ...+.||
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~--------~~~~~fD  187 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG--------ELNVEFD  187 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG--------GGCCCEE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc--------ccccccc
Confidence            46789999999999877776543221247899999988888776655443322222333333221        1235799


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      .|.-=+||.+-..
T Consensus       188 ~ILvDaPCSg~G~  200 (313)
T d1ixka_         188 KILLDAPCTGSGT  200 (313)
T ss_dssp             EEEEECCTTSTTT
T ss_pred             EEEEccccccCCc
Confidence            9999999998775

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=85.79  E-value=0.41  Score=45.63  Aligned_cols=95  Identities=13%  Similarity=0.119  Sum_probs=58.9

Q ss_pred             cccchhhhhccccccCCCCCcccccCCCCChHHHHHHHc-CCceeeEEEeecCHHHHHHHHHHhhhcCCCCCcccccccc
Q 006634          486 QTDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL-GIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQ  564 (637)
Q Consensus       486 qvdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a-Gi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~  564 (637)
                      +.+-+.++...+.. +..+.+|||+=||.|.+..-|... +-. ..++++|+++......+......+. ...+...|+.
T Consensus        11 n~d~l~~l~~~~~~-~~~~~~ILDiGcG~G~~~~~la~~~~~~-~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~   87 (281)
T d2gh1a1          11 NDDYVSFLVNTVWK-ITKPVHIVDYGCGYGYLGLVLMPLLPEG-SKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDAT   87 (281)
T ss_dssp             CHHHHHHHHHTTSC-CCSCCEEEEETCTTTHHHHHHTTTSCTT-CEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTT
T ss_pred             hHHHHHHHHHHHhc-cCCcCEEEEecCcCCHHHHHHHHhCCCC-CEEEEEecchhHhhhhhcccccccc-cccccccccc
Confidence            34434444333322 345689999999999988877653 111 1367999999988877765543321 2234567777


Q ss_pred             ccChhhHHHhhhccCCccEEEEcCCCCC
Q 006634          565 ALTTKKFESLIHKLGSIDFVICQNSVPQ  592 (637)
Q Consensus       565 ~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ~  592 (637)
                      ++..         .+.||+|+...-++-
T Consensus        88 ~~~~---------~~~fD~v~~~~~l~~  106 (281)
T d2gh1a1          88 EIEL---------NDKYDIAICHAFLLH  106 (281)
T ss_dssp             TCCC---------SSCEEEEEEESCGGG
T ss_pred             cccc---------cCCceEEEEehhhhc
Confidence            6542         146999997654443

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=85.73  E-value=0.64  Score=42.15  Aligned_cols=48  Identities=13%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             cccCCCCCcccccCCCCChHHHHHHHc----CCceeeEEEeecCHHHHHHHHHHh
Q 006634          498 KSMFPGGLTMLSVFSGIGGAEVTLHRL----GIKLKGVISIETSETNRRILKRWW  548 (637)
Q Consensus       498 K~~f~~~l~vLsLFSGiGGlslGL~~a----Gi~~k~vvaVEid~~a~~t~r~~~  548 (637)
                      +.+.+.+-+||||=||.|.++..|.+.    |.   -+.++|+++...+..+..-
T Consensus        34 ~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~---~v~giD~S~~ml~~A~~~~   85 (225)
T d1im8a_          34 ERFVTADSNVYDLGCSRGAATLSARRNINQPNV---KIIGIDNSQPMVERCRQHI   85 (225)
T ss_dssp             HHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSC---EEEEECSCHHHHHHHHHHH
T ss_pred             HHhcCCCCEEEEeccchhhHHHHHHHhhcCCCC---ceEEeCCCHHHHHHHHHHh
Confidence            444566789999999999999888763    44   3689999999887776543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.25  E-value=0.63  Score=44.92  Aligned_cols=85  Identities=11%  Similarity=0.105  Sum_probs=58.5

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+.+|||++||-||=+..+..++-. -.++|+|+++.-.+.++......+.....+...|-.      ... ....+.||
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~------~~~-~~~~~~fd  173 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY------PSQ-WCGEQQFD  173 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC------THH-HHTTCCEE
T ss_pred             ccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceeeeccccc------cch-hccccccc
Confidence            3678999999999999999888765 347899999999888887665443222111111111      010 11235799


Q ss_pred             EEEEcCCCCCcCc
Q 006634          583 FVICQNSVPQIPN  595 (637)
Q Consensus       583 LVIGGpPCQ~FS~  595 (637)
                      .|.-=+||.+...
T Consensus       174 ~IL~DaPCSg~G~  186 (284)
T d1sqga2         174 RILLDAPCSATGV  186 (284)
T ss_dssp             EEEEECCCCCGGG
T ss_pred             EEEEeccccccCc
Confidence            9999999998875

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.00  E-value=1.2  Score=40.81  Aligned_cols=84  Identities=11%  Similarity=0.018  Sum_probs=53.5

Q ss_pred             CCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCC
Q 006634          501 FPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGS  580 (637)
Q Consensus       501 f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~  580 (637)
                      .+.+.+||||=||.|+....+.+.-=. ..|++||+++...+.++..-...+  ....+..|......     .......
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~-g~V~gvDis~~~i~~a~~~a~~~~--ni~~i~~d~~~~~~-----~~~~~~~  125 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDE-GIIYAVEYSAKPFEKLLELVRERN--NIIPLLFDASKPWK-----YSGIVEK  125 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTT-SEEEEECCCHHHHHHHHHHHHHCS--SEEEECSCTTCGGG-----TTTTCCC
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccC-CeEEEEeCCHHHHHHHHHHhhccC--CceEEEeeccCccc-----cccccce
Confidence            345889999999999999888865212 258999999999887766543321  22234566654322     1112346


Q ss_pred             ccEEEEcCCCCC
Q 006634          581 IDFVICQNSVPQ  592 (637)
Q Consensus       581 ~DLVIGGpPCQ~  592 (637)
                      +|+|..-.++..
T Consensus       126 vd~v~~~~~~~~  137 (209)
T d1nt2a_         126 VDLIYQDIAQKN  137 (209)
T ss_dssp             EEEEEECCCSTT
T ss_pred             EEEEEecccChh
Confidence            777766555443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=84.36  E-value=0.46  Score=43.30  Aligned_cols=42  Identities=17%  Similarity=0.214  Sum_probs=35.2

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHH
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKR  546 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~  546 (637)
                      ..+=.|||.|+|.|...+|.+++|-   ..+++|+++...++-+.
T Consensus       211 ~~gd~VlDpF~GSGTT~~aa~~~~R---~~ig~El~~~y~~~a~~  252 (256)
T d1g60a_         211 NPNDLVLDCFMGSGTTAIVAKKLGR---NFIGCDMNAEYVNQANF  252 (256)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTC---EEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEECCCCchHHHHHHHHcCC---eEEEEeCCHHHHHHHHH
Confidence            3456799999999999999999995   46799999998776554

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=84.12  E-value=0.39  Score=45.04  Aligned_cols=44  Identities=16%  Similarity=0.106  Sum_probs=37.1

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWW  548 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~  548 (637)
                      +.+-.|||.|+|.|..-+|.+++|-+   .+++|+++...++.+..+
T Consensus       249 ~~gdiVlDpF~GSGTT~~AA~~lgR~---~Ig~El~~~y~~~a~~Rl  292 (320)
T d1booa_         249 EPDDLVVDIFGGSNTTGLVAERESRK---WISFEMKPEYVAASAFRF  292 (320)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTCE---EEEEESCHHHHHHHHGGG
T ss_pred             cCCCEEEecCCCCcHHHHHHHHcCCc---EEEEeCCHHHHHHHHHHH
Confidence            34568999999999999999999964   579999999888776543

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.92  E-value=1  Score=41.86  Aligned_cols=96  Identities=18%  Similarity=0.124  Sum_probs=61.6

Q ss_pred             ccchhhhhccccccCCCCCcccccCCCCChHHHHHHH-cCCceeeEEEeecCHHHHHHHHHHhhhcCC-----CCCcccc
Q 006634          487 TDTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-LGIKLKGVISIETSETNRRILKRWWESSGQ-----TGELVQI  560 (637)
Q Consensus       487 vdtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-aGi~~k~vvaVEid~~a~~t~r~~~~~tn~-----~g~l~~~  560 (637)
                      ..++++.|..|......+.+||++=||.|-++.-|.+ .|-. -.|+++|+++...+..+.+..+.+.     ....+..
T Consensus        60 P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~-g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~  138 (224)
T d1i1na_          60 PHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCT-GKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV  138 (224)
T ss_dssp             HHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTT-CEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred             hHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCC-ceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence            3466788888877667789999999999988766655 3422 2578999999887777665543221     1112334


Q ss_pred             ccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634          561 EDIQALTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       561 ~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                      +|....-.        ..+.||+|+-+.-+.
T Consensus       139 gD~~~~~~--------~~~~fD~I~~~~~~~  161 (224)
T d1i1na_         139 GDGRMGYA--------EEAPYDAIHVGAAAP  161 (224)
T ss_dssp             SCGGGCCG--------GGCCEEEEEECSBBS
T ss_pred             eecccccc--------hhhhhhhhhhhcchh
Confidence            55543322        234688877665443

>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Serine/threonine protein kinase LATS2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.90  E-value=0.6  Score=32.72  Aligned_cols=35  Identities=14%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHhCCCCcHHHHHHHHH
Q 006634           80 KRASLLMMNFSVNEVDFALDKLGKDAPVYELVDFIT  115 (637)
Q Consensus        80 ~~~~lv~MGF~~eeV~~AI~~~G~da~i~~Lld~I~  115 (637)
                      .+..|+.-||.++||..|+++-|... |++-++||.
T Consensus         5 Mlqdl~~aG~D~~m~iral~qt~~rs-ieaaie~is   39 (41)
T d2cosa1           5 MLQELVNAGCDQEMAGRALKQTGSRS-IEAALEYIS   39 (41)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHTSCC-HHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHhCccc-HHHHHHHHh
Confidence            45678999999999999999999976 799999985

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=83.70  E-value=1.1  Score=42.06  Aligned_cols=70  Identities=17%  Similarity=0.126  Sum_probs=48.8

Q ss_pred             chhhhhccccccCCCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccc
Q 006634          489 TLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQA  565 (637)
Q Consensus       489 tv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~  565 (637)
                      .+++.|..|.  ...+.+||++=||.|-++.-|.+++-   -|+++|+++......+..+...+  ...+..+|...
T Consensus        58 ~~a~ml~~L~--l~~g~~VLdIG~GsGy~ta~La~l~~---~V~aiE~~~~~~~~A~~~~~~~~--nv~~~~~d~~~  127 (224)
T d1vbfa_          58 LGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIVD---KVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTL  127 (224)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHSS---EEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGG
T ss_pred             hHHHHHHHhh--hcccceEEEecCCCCHHHHHHHHHhc---ccccccccHHHHHHHHHHHhccc--ccccccCchhh
Confidence            3344555553  34578999999999999988888874   47899999999888877654321  22234555543

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=83.48  E-value=0.67  Score=48.28  Aligned_cols=108  Identities=15%  Similarity=0.086  Sum_probs=56.3

Q ss_pred             hhhhhhcccchhhh-hccccccCCCCCcccccCCCCChHHHHHHH-c---CC-------------ceeeEEEeecCHHHH
Q 006634          480 SLRHCFQTDTLGYH-LSVLKSMFPGGLTMLSVFSGIGGAEVTLHR-L---GI-------------KLKGVISIETSETNR  541 (637)
Q Consensus       480 ~Lgnsfqvdtv~~~-lsvLK~~f~~~l~vLsLFSGiGGlslGL~~-a---Gi-------------~~k~vvaVEid~~a~  541 (637)
                      ..|--|....|... ...+.+ . .+.+|+|-+||.|||-++..+ +   +-             ....++++|+++.+.
T Consensus       142 ~~GqfyTP~~Iv~~mv~ll~~-~-~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~  219 (524)
T d2ar0a1         142 GAGQYFTPRPLIKTIIHLLKP-Q-PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTR  219 (524)
T ss_dssp             ---CCCCCHHHHHHHHHHHCC-C-TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHH
T ss_pred             ccchhccccchhHhhhhcccC-c-cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHH
Confidence            34555544433333 333333 2 357899999999999776432 1   10             012478999999988


Q ss_pred             HHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCccEEEEcCCCC
Q 006634          542 RILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSIDFVICQNSVP  591 (637)
Q Consensus       542 ~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~DLVIGGpPCQ  591 (637)
                      ++.+.+.--+..... +..++...... .+.........||+|+|=||=.
T Consensus       220 ~la~~nl~l~~~~~~-i~~~~~~~~~~-~l~~d~~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         220 RLALMNCLLHDIEGN-LDHGGAIRLGN-TLGSDGENLPKAHIVATNPPFG  267 (524)
T ss_dssp             HHHHHHHHTTTCCCB-GGGTBSEEESC-TTSHHHHTSCCEEEEEECCCCT
T ss_pred             HHHHHHHHhhccccc-ccccchhhhhh-hhhhcccccccceeEEecCCcc
Confidence            776654432222222 22222211111 1111112345799999999964

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.47  E-value=1.3  Score=41.29  Aligned_cols=60  Identities=15%  Similarity=0.176  Sum_probs=41.1

Q ss_pred             cchhhhhccccccCCCCCcccccCCCCChHHHHHHHc------CCceeeEEEeecCHHHHHHHHHHhh
Q 006634          488 DTLGYHLSVLKSMFPGGLTMLSVFSGIGGAEVTLHRL------GIKLKGVISIETSETNRRILKRWWE  549 (637)
Q Consensus       488 dtv~~~lsvLK~~f~~~l~vLsLFSGiGGlslGL~~a------Gi~~k~vvaVEid~~a~~t~r~~~~  549 (637)
                      ..+...+..|... +..++|||+=||.|.++..+-+.      +..+ .+++||+++.....++....
T Consensus        26 ~~l~~~l~~l~~~-~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~-~~~~vD~s~~~l~~a~~~~~   91 (280)
T d1jqea_          26 KKLPGIIGRIGDT-KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI-NNEVVEPSAEQIAKYKELVA   91 (280)
T ss_dssp             HTHHHHTTTTTTT-CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEE-EEEEECCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccC-CCCCeEEEEcCCCCHHHHHHHHHhhhhccCCce-EEEEEeCcHHHHHHHHHHHh
Confidence            3444455555443 34678999999999998776432      3332 35799999999888877654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=83.46  E-value=0.83  Score=43.80  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=52.3

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCC-CCccccccccccChhhHHHhhhccCCc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQT-GELVQIEDIQALTTKKFESLIHKLGSI  581 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~-g~l~~~~DI~~Lt~~~Ie~l~~~~g~~  581 (637)
                      .+.+|||+-||.|+++..|-++.-+--.|+++|+++...+..+.+....+.. ...+..+|+..-.         ....+
T Consensus       103 pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~---------~~~~~  173 (266)
T d1o54a_         103 EGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF---------DEKDV  173 (266)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC---------SCCSE
T ss_pred             CCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc---------cccce
Confidence            4789999999999999999765222124789999999888888776654321 1113345543211         12467


Q ss_pred             cEEEEcCCCC
Q 006634          582 DFVICQNSVP  591 (637)
Q Consensus       582 DLVIGGpPCQ  591 (637)
                      |.|+-.-|..
T Consensus       174 D~V~~d~p~p  183 (266)
T d1o54a_         174 DALFLDVPDP  183 (266)
T ss_dssp             EEEEECCSCG
T ss_pred             eeeEecCCCH
Confidence            8887776653

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=83.32  E-value=0.67  Score=46.82  Aligned_cols=79  Identities=14%  Similarity=0.081  Sum_probs=47.4

Q ss_pred             CCCcccccCCCCChHHHHHHHc----CCc--------eeeEEEeecCHHHHHHHHHHhhhcCCC--CCccccccccccCh
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRL----GIK--------LKGVISIETSETNRRILKRWWESSGQT--GELVQIEDIQALTT  568 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~a----Gi~--------~k~vvaVEid~~a~~t~r~~~~~tn~~--g~l~~~~DI~~Lt~  568 (637)
                      .+.+|+|-+||.|||-+++.+.    +..        -..++++|+++.+.++.+.+..-+...  ...+..+|.-.-  
T Consensus       162 ~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~~i~~~d~l~~--  239 (425)
T d2okca1         162 MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPIVCEDSLEK--  239 (425)
T ss_dssp             TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSEEECCTTTS--
T ss_pred             ccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccceeecCchhhh--
Confidence            3578999999999998776432    100        123789999999887766543322111  011122222111  


Q ss_pred             hhHHHhhhccCCccEEEEcCCC
Q 006634          569 KKFESLIHKLGSIDFVICQNSV  590 (637)
Q Consensus       569 ~~Ie~l~~~~g~~DLVIGGpPC  590 (637)
                             .....+|+|+|=||=
T Consensus       240 -------~~~~~fD~Ii~NPPf  254 (425)
T d2okca1         240 -------EPSTLVDVILANPPF  254 (425)
T ss_dssp             -------CCSSCEEEEEECCCS
T ss_pred             -------hcccccceEEecCCC
Confidence                   123579999999995

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.6  Score=42.95  Aligned_cols=47  Identities=21%  Similarity=0.196  Sum_probs=39.4

Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhh
Q 006634          502 PGGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWES  550 (637)
Q Consensus       502 ~~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~  550 (637)
                      +.+.+|||+=||.|+....+.+.+.  ..+++||+++...+..+.+...
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~--~~v~~id~s~~~~~~a~~~~~~   98 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPI--DEHWIIECNDGVFQRLRDWAPR   98 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCE--EEEEEEECCHHHHHHHHHHGGG
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCC--CeEEEeCCCHHHHHHHHHHhhh
Confidence            4678999999999999999988763  4578999999999888877644

>d1z96a1 a.5.2.1 (A:295-332) UBA-domain protein mud1 {Schizosaccharomyces pombe [TaxId: 4896]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: UBA-domain protein mud1
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=82.43  E-value=0.84  Score=31.13  Aligned_cols=25  Identities=36%  Similarity=0.335  Sum_probs=21.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHhCC
Q 006634           79 EKRASLLMMNFSVNEVDFALDKLGK  103 (637)
Q Consensus        79 ~~~~~lv~MGF~~eeV~~AI~~~G~  103 (637)
                      .++.+||.|||.+-|+..|++-..-
T Consensus         4 skiaqlvsmgfdpleaaqaldaang   28 (38)
T d1z96a1           4 SKIAQLVSMGFDPLEAAQALDAANG   28 (38)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred             hHHHHHHHcCCCHHHHHHHHhhhcC
Confidence            4789999999999999999987543

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=81.31  E-value=1.3  Score=41.75  Aligned_cols=75  Identities=15%  Similarity=0.005  Sum_probs=54.8

Q ss_pred             CCCcccccCCCCChHHHHHHHcCCceeeEEEeecCHHHHHHHHHHhhhcCCCCCccccccccccChhhHHHhhhccCCcc
Q 006634          503 GGLTMLSVFSGIGGAEVTLHRLGIKLKGVISIETSETNRRILKRWWESSGQTGELVQIEDIQALTTKKFESLIHKLGSID  582 (637)
Q Consensus       503 ~~l~vLsLFSGiGGlslGL~~aGi~~k~vvaVEid~~a~~t~r~~~~~tn~~g~l~~~~DI~~Lt~~~Ie~l~~~~g~~D  582 (637)
                      .+-+||++=+|.|.++..|-+.|-   .+.+||+|+.....++..+..  +....++.+|+-+++-..        ....
T Consensus        21 ~~d~VlEIGpG~G~LT~~Ll~~~~---~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~~--------~~~~   87 (235)
T d1qama_          21 EHDNIFEIGSGKGHFTLELVQRCN---FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPK--------NQSY   87 (235)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHSS---EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCS--------SCCC
T ss_pred             CCCeEEEECCCchHHHHHHHhCcC---ceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccccc--------cccc
Confidence            567899999999999999999884   478999999999998875532  233346788998775211        1234


Q ss_pred             EEEEcCCC
Q 006634          583 FVICQNSV  590 (637)
Q Consensus       583 LVIGGpPC  590 (637)
                      .|+|--|=
T Consensus        88 ~vv~NLPY   95 (235)
T d1qama_          88 KIFGNIPY   95 (235)
T ss_dssp             EEEEECCG
T ss_pred             eeeeeehh
Confidence            56676663

>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquitin isopeptidase T
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.09  E-value=0.67  Score=37.65  Aligned_cols=31  Identities=23%  Similarity=0.257  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHh
Q 006634            1 MGFSPSLVDKVIEEKGQDNVDLLLETLIEYN   31 (637)
Q Consensus         1 MGF~~e~V~KaI~e~Ge~~~d~iLE~Lltys   31 (637)
                      |||++..+.||+...|..+.+.-++-||...
T Consensus        39 MGF~~~~a~~AL~~t~n~~~e~A~~Wl~~h~   69 (84)
T d1veka_          39 MGFSQLHCQKAAINTSNAGVEEAMNWLLSHM   69 (84)
T ss_dssp             HTCCHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             cCCCHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence            9999999999999999889999999999874