Citrus Sinensis ID: 006679

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-----

MCFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

ccHHHHHHHHHHHHHHHccccEEcccccccccccccEEEEEEEEEccccccccccccccccccccccccccccHHHHHcccccccccEEEEEcccccEEEcccccccHHHHHHHHHHHHHccEEEEEEcccccEEEEccccccccEEEccccEEEEEEcccccccccEEEEEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccEEEEccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHEEHHHHccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

cHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEccccccccEEEEEcccccccccccccHHHHHHHcccccccccEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHcEEEEEEccccEEEEEEEccccccEEEccccEEEEEEccccccccEEEEEEEEEEEEEEEccccccccEEEEEEEEEcEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccHHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccEEEEcccccccccccEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccEEEHHHHHcccccccccccccccccccccccccccccHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

MCFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLtstktqlpysyyslpyckperiVDSAENLGevlrgdrienspyvfkmreplMCNVVCRLTLSKKTADEFKEKINDDYrvnmildnlplvvptrrpdqengivyqqgfhvglrgqyagskeekHFIHNHLAFTvkyhkdpqaetsrivgfevkpfsvkheyegdwsektrlttcdphakravtnsespqevddkkeIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEEtgwklvhgdvfrppansdllCVYVGTGVQFFGMFLVTMIFAVLGflspsnrgglMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIwgekssgavpfgTMFALVFLWFGISVPLVFVGsyigfrkpaiedpvktnkiprqipeqpwymnpifsiliggilpfGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTkleiskpvsgiLYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

MCFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLtstktqlpysyySLPYCKPERIVDSAENlgevlrgdrienSPYVFKMREPLMCNVVCRLTLSKKTADEFKekinddyrvnmILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSrivgfevkpfsvkheyegdwsektrlttcdphakravtnsespqevddkkEIIFTYdvefqesdvkWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFrkpaiedpvktnkIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

MCFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLetqeeaqeetGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQfyylfgflllvflilivTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSalylflyaafyffTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

*CFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWS*****************************EIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLE*******ETGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSV***

MCFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPY****************LRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAK***********VDDKKEIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDIS***********QEETGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

MCFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAK************DDKKEIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLE*********GWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

MCFSFVHHFCLTLDRVLSDDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYE*****KTRLTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

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SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo

SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		635	2.2.26 [Sep-21-2011]
Q92544		642	Transmembrane 9 superfami	yes	no	0.922	0.912	0.507	1e-180
Q5RDY2		642	Transmembrane 9 superfami	yes	no	0.922	0.912	0.507	1e-180
A5D7E2		642	Transmembrane 9 superfami	yes	no	0.922	0.912	0.508	1e-180
Q8BH24		643	Transmembrane 9 superfami	yes	no	0.922	0.911	0.496	1e-178
Q4KLL4		643	Transmembrane 9 superfami	yes	no	0.922	0.911	0.498	1e-177
Q55FP0		641	Putative phagocytic recep	yes	no	0.937	0.928	0.514	1e-176
Q99805		663	Transmembrane 9 superfami	no	no	0.916	0.877	0.480	1e-164
Q66HG5		663	Transmembrane 9 superfami	no	no	0.918	0.879	0.471	1e-163
Q5R8Y6		663	Transmembrane 9 superfami	no	no	0.916	0.877	0.479	1e-163
P58021		662	Transmembrane 9 superfami	no	no	0.918	0.880	0.471	1e-163

>sp\|Q92544\|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2	Back alignment and function desciption

 Score =  632 bits (1630), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 316/623 (50%), Positives = 430/623 (69%), Gaps = 37/623 (5%)

Query: 34  QGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMR 93
           Q D +++K  KLTS++TQLPY YYSLP+C+P +I   AENLGEVLRGDRI N+P+   M 
Sbjct: 36  QNDPVEIKAVKLTSSRTQLPYEYYSLPFCQPSKITYKAENLGEVLRGDRIVNTPFQVLMN 95

Query: 94  EPLMCNVVCR-----LTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQEN---- 144
               C V+C      +TL+ + +    E+I +DY V++I DNLP  V TR     N    
Sbjct: 96  SEKKCEVLCSQSNKPVTLTVEQSRLVAERITEDYYVHLIADNLP--VATRLELYSNRDSD 153

Query: 145 ------GIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDP----QAETSRIVGF 194
                  + ++ G+ +G       +   K ++HNHL+F + YH++     Q  T R+V F
Sbjct: 154 DKKKEKDVQFEHGYRLGF------TDVNKIYLHNHLSFILYYHREDMEEDQEHTYRVVRF 207

Query: 195 EVKPFSVKHEYEGDWSEKTRLTTCDPHAKRAVTNSESPQEVDDKKE--IIFTYDVEFQES 252
           EV P S++ E   D     + +   P      TNS SPQE+D  KE  + FTY V ++ES
Sbjct: 208 EVIPQSIRLE---DLKADEKSSCTLPEG----TNS-SPQEIDPTKENQLYFTYSVHWEES 259

Query: 253 DVKWASRWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQE 312
           D+KWASRWDTYL M+D QIHWFSI+NS+++V FLSG+++MI++RTL +DI+ YN+ +  E
Sbjct: 260 DIKWASRWDTYLTMSDVQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANYNKEDDIE 319

Query: 313 EAQEETGWKLVHGDVFRPPANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLM 372
           +  EE+GWKLVHGDVFRPP    +L   +G+G+Q F M L+ +  A+LG LSPS+RG LM
Sbjct: 320 DTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALM 379

Query: 373 TAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEK 432
           T    +++FMG+  G+++ RLY+  KG  WKK    TA ++PG+ F I FVLN  IWG+ 
Sbjct: 380 TTACFLFMFMGVFGGFSAGRLYRTLKGHRWKKGAFCTATLYPGVVFGICFVLNCFIWGKH 439

Query: 433 SSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNP 492
           SSGAVPF TM AL+ +WFGIS+PLV++G Y GFRK   ++PV+TN+IPRQIPEQ WYMN 
Sbjct: 440 SSGAVPFPTMVALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNR 499

Query: 493 IFSILIGGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQ 552
              IL+ GILPFGA+FIELFFI ++IW +QFYYLFGFL LVF+IL+V+C++I+IV+ YFQ
Sbjct: 500 FVGILMAGILPFGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQ 559

Query: 553 LCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVL 612
           LC+EDY WWWR++L SG SA Y+ +YA FYF  KL+I + +  +LYFGY  +   +F++L
Sbjct: 560 LCAEDYRWWWRNFLVSGGSAFYVLVYAIFYFVNKLDIVEFIPSLLYFGYTALMVLSFWLL 619

Query: 613 TGTIGFYACFWFTRLIYSSVKID 635
           TGTIGFYA + F R IY++VKID
Sbjct: 620 TGTIGFYAAYMFVRKIYAAVKID 642

Homo sapiens (taxid: 9606)

>sp\|Q5RDY2\|TM9S4_PONAB Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1	Back alignment and function description

>sp\|A5D7E2\|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2	Back alignment and function description

>sp\|Q8BH24\|TM9S4_MOUSE Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|Q4KLL4\|TM9S4_RAT Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|Q55FP0\|PHG1A_DICDI Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1	Back alignment and function description

>sp\|Q99805\|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1	Back alignment and function description

>sp\|Q66HG5\|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

>sp\|Q5R8Y6\|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1	Back alignment and function description

>sp\|P58021\|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		635
255576995		640	Endosomal P24A protein precursor, putati	0.949	0.942	0.903	0.0
225445861		646	PREDICTED: transmembrane 9 superfamily m	0.948	0.931	0.885	0.0
224088282		645	predicted protein [Populus trichocarpa]	0.946	0.931	0.882	0.0
224143946		645	predicted protein [Populus trichocarpa]	0.949	0.934	0.867	0.0
449455513		642	PREDICTED: transmembrane 9 superfamily m	0.948	0.937	0.847	0.0
356516998		644	PREDICTED: transmembrane 9 superfamily m	0.948	0.934	0.847	0.0
255548734		645	Endosomal P24A protein precursor, putati	0.949	0.934	0.857	0.0
225430488		638	PREDICTED: transmembrane 9 superfamily m	0.948	0.943	0.848	0.0
449457879		638	PREDICTED: transmembrane 9 superfamily m	0.948	0.943	0.855	0.0
224141971		639	predicted protein [Populus trichocarpa]	0.948	0.942	0.855	0.0

>gi\|255576995\|ref\|XP_002529382.1\| Endosomal P24A protein precursor, putative [Ricinus communis] gi\|223531130\|gb\|EEF32978.1\| Endosomal P24A protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1120 bits (2896), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 546/604 (90%), Positives = 574/604 (95%), Gaps = 1/604 (0%)

Query: 33  MQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKM 92
           + GDELKVKVNKLTSTKTQLPYSYYSLPYC PERIVDSAENLGEVLRGDRIENSPYVFKM
Sbjct: 37  LMGDELKVKVNKLTSTKTQLPYSYYSLPYCHPERIVDSAENLGEVLRGDRIENSPYVFKM 96

Query: 93  REPLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGF 152
           REP MC ++CR+TL  KTA EFKEKI+D+YRVNMILDNLPLV P +R DQEN IVYQ GF
Sbjct: 97  REPQMCKILCRITLDAKTAKEFKEKIDDEYRVNMILDNLPLVFPIQRSDQENSIVYQHGF 156

Query: 153 HVGLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWS-E 211
           HVGLRGQYAGSKE+KHFIHNHLAFTVKYHKD Q +++RIVGFEVKPFSVKHE+EG+W  E
Sbjct: 157 HVGLRGQYAGSKEQKHFIHNHLAFTVKYHKDAQTDSARIVGFEVKPFSVKHEFEGEWKKE 216

Query: 212 KTRLTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWASRWDTYLLMADDQI 271
            TRLTTCDPHAKR VT+SE+PQEV+DKK+IIFTYDVEFQESDVKWASRWDTYLLMADDQI
Sbjct: 217 NTRLTTCDPHAKRLVTSSETPQEVEDKKDIIFTYDVEFQESDVKWASRWDTYLLMADDQI 276

Query: 272 HWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPP 331
           HWFSIVNSLMIV+FLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPP
Sbjct: 277 HWFSIVNSLMIVLFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPP 336

Query: 332 ANSDLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASA 391
            NSDLLCVYVGTGVQFFGM LVTMIFA LGFLSPSNRGGLMTAMLL+W+FMGL AGY+SA
Sbjct: 337 MNSDLLCVYVGTGVQFFGMILVTMIFAALGFLSPSNRGGLMTAMLLLWVFMGLFAGYSSA 396

Query: 392 RLYKMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFG 451
           RLYKMFKGTEWKKITLKTA MFP I FAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFG
Sbjct: 397 RLYKMFKGTEWKKITLKTACMFPAIVFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFG 456

Query: 452 ISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIEL 511
           ISVPLVFVGSYIGF+KPAIEDPVKTNKIPRQIPEQ WYMNP FSILIGGILPFGA+FIEL
Sbjct: 457 ISVPLVFVGSYIGFKKPAIEDPVKTNKIPRQIPEQAWYMNPAFSILIGGILPFGAVFIEL 516

Query: 512 FFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSS 571
           FFILTSIWLHQFYY+FGFL +VF+IL+VTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSS
Sbjct: 517 FFILTSIWLHQFYYIFGFLFIVFIILLVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSS 576

Query: 572 ALYLFLYAAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSS 631
           ALYLFLYAAFYFFTKLEI+KPVSGILYFGYMLI SYAFFVLTG IGFYACFWFTRLIYSS
Sbjct: 577 ALYLFLYAAFYFFTKLEITKPVSGILYFGYMLIVSYAFFVLTGAIGFYACFWFTRLIYSS 636

Query: 632 VKID 635
           VKID
Sbjct: 637 VKID 640

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225445861\|ref\|XP_002278700.1\| PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224088282\|ref\|XP_002308404.1\| predicted protein [Populus trichocarpa] gi\|222854380\|gb\|EEE91927.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224143946\|ref\|XP_002325132.1\| predicted protein [Populus trichocarpa] gi\|222866566\|gb\|EEF03697.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449455513\|ref\|XP_004145497.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus] gi\|449485197\|ref\|XP_004157096.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356516998\|ref\|XP_003527177.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|255548734\|ref\|XP_002515423.1\| Endosomal P24A protein precursor, putative [Ricinus communis] gi\|223545367\|gb\|EEF46872.1\| Endosomal P24A protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225430488\|ref\|XP_002285526.1\| PREDICTED: transmembrane 9 superfamily member 4 isoform 1 [Vitis vinifera] gi\|296082138\|emb\|CBI21143.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449457879\|ref\|XP_004146675.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus] gi\|449503161\|ref\|XP_004161864.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224141971\|ref\|XP_002324334.1\| predicted protein [Populus trichocarpa] gi\|222865768\|gb\|EEF02899.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		635
TAIR\|locus:2047565		637	AT2G24170 [Arabidopsis thalian	0.946	0.943	0.788	4e-264
TAIR\|locus:2183710		648	EMP1 "endomembrane protein 1"	0.948	0.929	0.772	6.1e-261
TAIR\|locus:2091561		641	TMN7 "transmembrane nine 7" [A	0.946	0.937	0.698	2.3e-236
TAIR\|locus:2205682		637	TMN6 "transmembrane nine 6" [A	0.946	0.943	0.688	2.3e-229
UNIPROTKB\|Q92544		642	TM9SF4 "Transmembrane 9 superf	0.924	0.914	0.472	9.8e-151
UNIPROTKB\|F1PWE3		642	TM9SF4 "Uncharacterized protei	0.924	0.914	0.472	1.2e-150
UNIPROTKB\|A5D7E2		642	TM9SF4 "Transmembrane 9 superf	0.924	0.914	0.474	1.6e-150
UNIPROTKB\|F1NVX7		642	TM9SF4 "Uncharacterized protei	0.925	0.915	0.479	5.4e-150
ZFIN\|ZDB-GENE-040426-1575		651	tm9sf4 "transmembrane 9 superf	0.932	0.909	0.477	2.3e-149
MGI\|MGI:2139220		643	Tm9sf4 "transmembrane 9 superf	0.925	0.914	0.463	7.9e-149

TAIR\|locus:2047565 AT2G24170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2541 (899.5 bits), Expect = 4.0e-264, P = 4.0e-264
 Identities = 474/601 (78%), Positives = 508/601 (84%)

Query:    35 GDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMRE 94
             GD L VKVNKLTSTKTQLPYSYYSLPYC+PE IVDSAENLGEVLRGDRIENSP+VFKMRE
Sbjct:    37 GDALMVKVNKLTSTKTQLPYSYYSLPYCRPEHIVDSAENLGEVLRGDRIENSPFVFKMRE 96

Query:    95 PLMCNVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHV 154
               MC  VCR+ L KKTA  FKEKI D+YRVNMILDNLPLVVP +RPDQ+N +VYQ GFHV
Sbjct:    97 SQMCAAVCRVKLDKKTAKAFKEKIADEYRVNMILDNLPLVVPVQRPDQDNVVVYQHGFHV 156

Query:   155 GLRGQYAGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTR 214
             GL+G +AG KEEK+FIHNHL FTV+YH+D Q ++SRIVGFEVKPFSVKHEYEG W+EK R
Sbjct:   157 GLKGIFAGKKEEKYFIHNHLTFTVRYHRDIQTDSSRIVGFEVKPFSVKHEYEGQWNEKAR 216

Query:   215 LTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWASRWDTYLLMADDQIHWF 274
             LTTCDPH KRAVTNSESPQEV++  EIIFTYDV+FQES+VKWASRWDTYLLMADDQIHWF
Sbjct:   217 LTTCDPHTKRAVTNSESPQEVEEGNEIIFTYDVDFQESEVKWASRWDTYLLMADDQIHWF 276

Query:   275 SIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLXXXXXXXXXXGWKLVHGDVFRPPANS 334
             SIVNS+MIV+FLSGMVAMIMLRTLYRDIS YNQL          GWKLVHGDVFRPP N 
Sbjct:   277 SIVNSMMIVLFLSGMVAMIMLRTLYRDISNYNQLESHEEALEETGWKLVHGDVFRPPTNP 336

Query:   335 DLLCVYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLY 394
             +LLCVY GTGVQ FGM LVTMIFA LGFLSPSNRGGLMTAMLL+W+FMGLLAGYAS+RLY
Sbjct:   337 ELLCVYAGTGVQCFGMILVTMIFACLGFLSPSNRGGLMTAMLLLWVFMGLLAGYASSRLY 396

Query:   395 KMFKGTEWKKITLKTAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISV 454
             K  +GTEWK+  LKTAFMFP   F  FFVLNA+IWG+KSSGAVPFGTMFALV LWFGISV
Sbjct:   397 KTLRGTEWKRNALKTAFMFPATVFVAFFVLNAIIWGQKSSGAVPFGTMFALVVLWFGISV 456

Query:   455 PLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFI 514
             PLVF+G YIGFRKPA EDPVKTNKIPRQIP Q WYMNPIFSILIGGILPFGA+FIELFFI
Sbjct:   457 PLVFIGGYIGFRKPAPEDPVKTNKIPRQIPTQAWYMNPIFSILIGGILPFGAVFIELFFI 516

Query:   515 LTSIWLHQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSXXX 574
             LTSIWLHQ                 TCAEIT+VLCYFQLCSEDY WWWRSYLTSGSS   
Sbjct:   517 LTSIWLHQFYYIFGFLFIVFIILIITCAEITVVLCYFQLCSEDYQWWWRSYLTSGSSAVY 576

Query:   575 XXXXXXXXXXTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKI 634
                       TKLEI+K VS +LYFGYMLI SY FFV TG IGFYACFWFTRLIYSSVKI
Sbjct:   577 LFLYAVFYFYTKLEITKLVSAVLYFGYMLIVSYVFFVFTGAIGFYACFWFTRLIYSSVKI 636

Query:   635 D 635
             D
Sbjct:   637 D 637

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

TAIR\|locus:2183710 EMP1 "endomembrane protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2091561 TMN7 "transmembrane nine 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2205682 TMN6 "transmembrane nine 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q92544 TM9SF4 "Transmembrane 9 superfamily member 4" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWE3 TM9SF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|A5D7E2 TM9SF4 "Transmembrane 9 superfamily member 4" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVX7 TM9SF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1575 tm9sf4 "transmembrane 9 superfamily protein member 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

MGI\|MGI:2139220 Tm9sf4 "transmembrane 9 superfamily protein member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BH24	TM9S4_MOUSE	No assigned EC number	0.4967	0.9228	0.9113	yes	no
Q5RDY2	TM9S4_PONAB	No assigned EC number	0.5072	0.9228	0.9127	yes	no
Q4KLL4	TM9S4_RAT	No assigned EC number	0.4983	0.9228	0.9113	yes	no
Q04562	TMN2_YEAST	No assigned EC number	0.3459	0.9165	0.8660	yes	no
A5D7E2	TM9S4_BOVIN	No assigned EC number	0.5088	0.9228	0.9127	yes	no
Q55FP0	PHG1A_DICDI	No assigned EC number	0.5147	0.9370	0.9282	yes	no
Q92544	TM9S4_HUMAN	No assigned EC number	0.5072	0.9228	0.9127	yes	no
Q9Y819	YON8_SCHPO	No assigned EC number	0.3901	0.8818	0.8903	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		635
pfam02990		518	pfam02990, EMP70, Endomembrane protein 70	0.0

>gnl\|CDD\|217309 pfam02990, EMP70, Endomembrane protein 70	Back alignment and domain information

 Score =  734 bits (1898), Expect = 0.0
 Identities = 304/546 (55%), Positives = 394/546 (72%), Gaps = 32/546 (5%)

Query: 52  LPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMCNVVCRLTLSKKTA 111
            PY YYSLP+C+PE+I   +E+LGEVL GDRI NSPY  K  E   C V+C + L+ +  
Sbjct: 1   EPYEYYSLPFCRPEKIKHKSESLGEVLFGDRIYNSPYKLKFLEEKECEVLCAVKLTSEDV 60

Query: 112 DEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIH 171
             F++ I + Y V  ++DNLP+     + D   G+ ++ GF +G         EEK+++ 
Sbjct: 61  KFFRKAIEEGYYVQWLIDNLPVAGFVGKVD-NKGVGFESGFPLGF------QTEEKYYLF 113

Query: 172 NHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAKRAVTNSES 231
           NHL F ++YH D   +  RIVG EV P SVK             + C            S
Sbjct: 114 NHLDFVIEYH-DRDNDDYRIVGIEVTPRSVKP------------SGCSTT--------SS 152

Query: 232 PQEVDDKKE--IIFTYDVEFQESDVKWASRWDTYLL-MADDQIHWFSIVNSLMIVVFLSG 288
           PQE+D+ KE  + FTY V+++ESDVKWASRWD YL  M D QIHWFSI+NSL+IV+FLSG
Sbjct: 153 PQELDEGKENELTFTYSVKWKESDVKWASRWDKYLDAMHDLQIHWFSIINSLVIVLFLSG 212

Query: 289 MVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLCVYVGTGVQFF 348
           +V+MI++RTL RDI++YN+L+  E+AQEE+GWKLVHGDVFRPP N  LL   VG+GVQ  
Sbjct: 213 IVSMILMRTLRRDIARYNELDEDEDAQEESGWKLVHGDVFRPPRNPMLLSALVGSGVQLL 272

Query: 349 GMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLK 408
            M + T++FA LGFLSPSNRG L+TA ++++   G +AGY SARLYK FKG +WK+  + 
Sbjct: 273 LMVIGTIVFACLGFLSPSNRGSLLTAAIVLYALTGFVAGYVSARLYKTFKGKKWKRNLIL 332

Query: 409 TAFMFPGICFAIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKP 468
           TAF+FPGI F IFFVLN ++W   SSGA+PFGT+ AL+ LWF +SVPL F+G  +GFR  
Sbjct: 333 TAFLFPGIVFVIFFVLNFVLWAYGSSGAIPFGTIVALLLLWFLVSVPLTFLGGIVGFRNR 392

Query: 469 AI-EDPVKTNKIPRQIPEQPWYMNPIFSILIGGILPFGAIFIELFFILTSIWLHQFYYLF 527
           A  + PV+TN+IPRQIPEQPWY++P+  IL+GGILPFGAIFIELFFI TS+WLH+ YY+F
Sbjct: 393 AGEQHPVRTNQIPRQIPEQPWYLSPLPGILMGGILPFGAIFIELFFIFTSLWLHKIYYMF 452

Query: 528 GFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKL 587
           GFL LVF+IL+V C+E+TIVL YFQLC+EDY WWWRS+LTSGS+A+Y+FLY+ +YFFTKL
Sbjct: 453 GFLFLVFIILVVVCSEVTIVLTYFQLCAEDYRWWWRSFLTSGSTAVYVFLYSIYYFFTKL 512

Query: 588 EISKPV 593
           +IS  V
Sbjct: 513 KISGFV 518

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		635
KOG1278		628	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
KOG1277		593	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
PF02990		521	EMP70: Endomembrane protein 70; InterPro: IPR00424	100.0
PF11368		248	DUF3169: Protein of unknown function (DUF3169); In	86.33
PF12670		116	DUF3792: Protein of unknown function (DUF3792); In	82.59

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=1.5e-201  Score=1594.45  Aligned_cols=605  Identities=65%  Similarity=1.167  Sum_probs=580.1

Q ss_pred             cCccccCCCCCcCCCCCCeEEEEEeeccCCCCCcccccccCCCCCCCCccccccCcCcceecCeeeeCceEEEecccccc
Q 006679           19 DDMKLFCGFYTFALMQGDELKVKVNKLTSTKTQLPYSYYSLPYCKPERIVDSAENLGEVLRGDRIENSPYVFKMREPLMC   98 (635)
Q Consensus        19 ~~~f~lpg~~p~~Y~~Gd~V~l~vNkl~s~~~~~~Y~Yy~lpfC~p~~~~~~~~slGe~L~Gdr~~~S~y~i~f~~~~~c   98 (635)
                      +.|||+||++|..|++||+++++|||++|.++|.||+||++|||+|+++++++|||||+|+|||++||||+++|++|++|
T Consensus        24 ~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~~i~~~~EnLGeVl~GDRi~nSPy~~~m~e~~~C  103 (628)
T KOG1278|consen   24 SSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPEKIKKQSENLGEVLRGDRIENSPYKFKMLENQPC  103 (628)
T ss_pred             ccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCccccCCcccchhceeccCcccCCCceEecccCCcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeecCHHHHHHHHHHHhhccEEEEEEeeeeeeeeccCCCCCCceeeecCccccccccccCCCCCceEEeeeEEEEE
Q 006679           99 NVVCRLTLSKKTADEFKEKINDDYRVNMILDNLPLVVPTRRPDQENGIVYQQGFHVGLRGQYAGSKEEKHFIHNHLAFTV  178 (635)
Q Consensus        99 ~~lC~~~~t~~~~~~l~~~I~~~Y~~~~~ID~LPv~~~~~~~~~~~~~~~~~GfplG~~~~~~~~~~~~~yl~NH~~f~I  178 (635)
                      +.+|+.++++++++.++|+|+++|++||++||||++.+.... ++++.+|++|||+|+.++   ++.+++|++||++|+|
T Consensus       104 ~~lC~~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~-~~~~~~y~~GfplG~~~~---~~~~~~y~~NHl~~~i  179 (628)
T KOG1278|consen  104 ETLCATKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERS-DDGKVYYGTGFPLGFKGP---KDEDKYYLHNHLDFVI  179 (628)
T ss_pred             hhhhcccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeec-CCCceEeccCccceeccC---CCccceeEeeeEEEEE
Confidence            999999999999999999999999999999999998876542 357899999999999842   2456789999999999


Q ss_pred             EEecCCCCCccEEEEEEEEeeeeeccCCCCcccccccccCCCcccccccCCCCCcccCCCcEEEEEEEEEEEecccccch
Q 006679          179 KYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRLTTCDPHAKRAVTNSESPQEVDDKKEIIFTYDVEFQESDVKWAS  258 (635)
Q Consensus       179 ~y~~~~~~~~~~IVg~~v~p~Sv~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~i~fTYSV~w~~s~~~w~~  258 (635)
                      +||..+ +++||||||||+|+|++|+.++.++++ .+.+|+.+.++..++|      .+++++.|||||+|+|||++|++
T Consensus       180 ~yH~~~-~~~~riVgfeV~P~Si~~~~~~~~~~~-~~~~c~~~~~~~~~~e------~~~~~i~fTYsV~f~esdi~Was  251 (628)
T KOG1278|consen  180 RYHRDD-NDKYRIVGFEVKPVSIKHEHEKGDSKN-SLPTCSIPEKPLELDE------GEETEIVFTYSVKFEESDIKWAS  251 (628)
T ss_pred             EEEecC-CCceEEEEEEEEeeeeecccCCCcccc-cCCcccCCCCccccCC------CCceEEEEEEEEEEEeccCcchh
Confidence            999887 677999999999999999876543333 6677887766555444      23567999999999999999999


Q ss_pred             hhhhhcccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhhhhhhhhcCceEEeccccCCCCCcccch
Q 006679          259 RWDTYLLMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISKYNQLETQEEAQEETGWKLVHGDVFRPPANSDLLC  338 (635)
Q Consensus       259 Rwd~yl~~~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~yn~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lLs  338 (635)
                      |||+||++++.|||||||+||++||+||+++|++|++||||||++|||++|.|||+|||+|||+|||||||||+++|+||
T Consensus       252 RWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d~~~d~~Ee~GWKLVhGDVFR~P~~~~lLs  331 (628)
T KOG1278|consen  252 RWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELDLDDDAQEESGWKLVHGDVFRPPRNSMLLS  331 (628)
T ss_pred             hHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhccccchhhhhhhcceEEeecccccCCCCCeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeccchHHHHHHHHHHHHHHhhccCCCCcchHHHHHHHHHHHHhhhhHHHHHHHHHhhcCccchhhhhhhccchhHHHH
Q 006679          339 VYVGTGVQFFGMFLVTMIFAVLGFLSPSNRGGLMTAMLLVWIFMGLLAGYASARLYKMFKGTEWKKITLKTAFMFPGICF  418 (635)
Q Consensus       339 ~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~~~iaGy~S~~~yk~~~g~~W~~~~~lt~~l~P~~~~  418 (635)
                      ++||+|+|+++|+++++++|++|++||++||+|+|+++++|+++|++|||+|+|+||+++|+.||+++++|++++||+++
T Consensus       332 v~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~agY~s~rlyk~~~g~~wk~~~~lta~l~PGivf  411 (628)
T KOG1278|consen  332 VLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVAGYVSARLYKTFKGREWKRNAILTAFLFPGIVF  411 (628)
T ss_pred             EEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhhhhhhhhhHhhhcCCcchhhHHhhhhhcchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhccCCCccChhHHHHHHHHHHHhhhchhhhhhhhcccCCCCCCCCccCCCCCCCCCCCCccccchhhhc
Q 006679          419 AIFFVLNALIWGEKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGFRKPAIEDPVKTNKIPRQIPEQPWYMNPIFSILI  498 (635)
Q Consensus       419 ~i~~~~N~i~~~~~Ss~a~pf~ti~~l~~lw~~vs~PL~~iG~~~g~k~~~~~~P~~~n~ipR~IP~~~~y~~~~~~~l~  498 (635)
                      ++++++|++.|+++||+|+||+|++++++||++||+||+++|+++|+|++++|+|+||||||||||.||||+++++.+++
T Consensus       412 ~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili  491 (628)
T KOG1278|consen  412 AIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFGFKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILI  491 (628)
T ss_pred             HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhhccCCCCCCCcccCCCcccCCCCccccchhhHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccchhhhHHHHHHHHhhhchhhHHHHHHHHHHHHHHHHHHHhHHhhhhhccccCCCCceeeeheeccCchhHHHHHH
Q 006679          499 GGILPFGAIFIELFFILTSIWLHQFYYLFGFLLLVFLILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLY  578 (635)
Q Consensus       499 ~G~lPF~~i~iEl~~i~~S~W~~~~yy~fgfL~~~~iilii~~a~vsI~~tY~~L~~Edy~WwWrSF~~~gs~~~y~f~Y  578 (635)
                      ||++||++|||||+||++|+|.+|+||+||||+++++||+++|||+||++||+|||+||||||||||++||++|+|+|+|
T Consensus       492 ~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaeisIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiY  571 (628)
T KOG1278|consen  492 AGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEISIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIY  571 (628)
T ss_pred             hcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeeeeeccCcchhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhheeccccCceeehhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccCC
Q 006679          579 AAFYFFTKLEISKPVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID  635 (635)
Q Consensus       579 si~y~~~~~~~~g~~~~~~yf~ys~l~s~~~~l~~G~IGflas~~Fv~~IY~~iK~D  635 (635)
                      |++|+++|++++|++++++|||||++++++++|+||||||+||+|||||||+++|+|
T Consensus       572 si~Y~~~kL~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~Fv~kIYssvKiD  628 (628)
T KOG1278|consen  572 SIFYFFTKLEISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFWFVRKIYSSVKID  628 (628)
T ss_pred             HHhhhheeeeecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhheecC
Confidence            999999999999999999999999999999999999999999999999999999998

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter	Back alignment and domain information

>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed	Back alignment and domain information

>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		635
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 41.4 bits (96), Expect = 9e-04
 Identities = 92/609 (15%), Positives = 159/609 (26%), Gaps = 168/609 (27%)

Query: 108 KKTADEFKEKINDDYRVNMILDNLPLVVPTR-------RPDQENGIVYQQGFHVGLRGQY 160
           K     F++   D++    + D    ++            D  +G +    F   L  + 
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL--FWT-LLSK- 74

Query: 161 AGSKEEKHFIHNHLAFTVKYHKDPQAETSRIVGFEVKPFSVKHEYEGDWSEKTRL-TTCD 219
              +  + F+   L    K+   P     R      +P  +   Y     ++ RL     
Sbjct: 75  -QEEMVQKFVEEVLRINYKFLMSPIKTEQR------QPSMMTRMYI---EQRDRLYNDNQ 124

Query: 220 PHAKRAVTNSESPQEVDDKKEIIFTYDVEFQ-ESDV---------KW-----ASRWDTYL 264
             AK  V+     Q     ++ +     E +   +V         K              
Sbjct: 125 VFAKYNVS---RLQPYLKLRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 265 LMADDQIHWFSIVNSLMIVVFLSGMVAMIMLRTLYRDISK-YNQLETQ--------EEAQ 315
              D +I W ++ N        S    + ML+ L   I   +                 Q
Sbjct: 178 CKMDFKIFWLNLKNC------NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231

Query: 316 EETGWKLVHGDVFRPPANSDLLC---VYVGTGVQFFG----MFLVTMIFAVLGFLSPSNR 368
            E    L      +P  N  LL    V        F     + L T    V  FLS +  
Sbjct: 232 AELRRLLKS----KPYENC-LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 369 GGLMTAMLLVWIF-----MGLLAGYAS---------------------ARLYKMFKGT-- 400
             + +               LL  Y                       A   +    T  
Sbjct: 287 THI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD 345

Query: 401 EWKKIT---LKTAF--------------MFPGICFAIF--------FVLNALIWGEKSSG 435
            WK +    L T                MF     ++F         +L +LIW +    
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTILL-SLIWFDVIK- 401

Query: 436 AVPFGTM-----FALVFLW---FGISVPLVFVGSYIGFRKPAIEDPVKTNKI--PRQIPE 485
           +     +     ++LV        IS+P +    Y+  +     +      I     IP+
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPK 457

Query: 486 --QPWYMNPIFSILIGGILPFGAIFIELFFI---LTSIWLHQFYYLFG--FLLLVFLI-- 536
                 + P +             +     I   L +I   +   LF   FL   FL   
Sbjct: 458 TFDSDDLIPPYL--------DQYFY---SHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 537 LIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYAAFYFFTKLE---ISKPV 593
           +                  +  L +++ Y+          + A   F  K+E   I    
Sbjct: 507 IRHDSTAWNASGSILNTLQQ--LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

Query: 594 SGILYFGYM 602
           + +L    M
Sbjct: 565 TDLLRIALM 573

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00