Citrus Sinensis ID: 006695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-----
Protein Sequence
MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKFATRIGKLDDKAASPSGTSDEEELEPRICSMLHFPRYVQCPN
Secondary Structure (PSIPRED)
cEEEcccccEEEEcHHHHcccccccEEEcccccccccccccEEEEcccccccccccccEEEEccccccccccccccccccEEEccccccEEccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccEEEccccccEEEcccccccccccEEEcccccccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccccccccccccEEEccccccccccccccccccccEEEEcccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccccccEEEEEcccccccccEEEEEEEEEEEcccccccccEEEEEEEEEEccccccEEEEEccEEEccccccccccEEEEEEEccccccccccccEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccHHHHHHccccEEEEEEccccccccccccEEEcccccccccHHcEEEEccccccccccccccHHHHEEEcccccHHHHHcccccccccccEEEcccccccccccccccccccHEEEcccccccccccccHHHHHHcEEEEcccccccccccccccHHHHHEEEcccccHHHcccHHHHHHHHEEccccccHcccccHHHHHccEEEEccccccHccccccHHHHHcccEEEcccccHHHcccHHcccccHccEEEccccccccccHHHHHcccccEEEEEEccEEEEEccccccccccccHHHHHcccEEEccccccccccccccccccEEEcccccccccccccHHHHHHHHHcccHHHcccccccccccccEEEEEcccHcccHcHHHHHHHHHHHHHHHHcHHHHcccccccccccccEEEEcccccccHHEcccccccEEEEEcccccccccccEEEEEEEEccccccccccEEEEEEEEEccccccEccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEEEEEEEEEccccEEEEEcEEEEEEEcccccccccccccccccccccccccEEccccccccEEEccccccccccccccccc
Coil and Loop (DISEMBL)
mfldlskitsihlspqafanmpnlrflkfympehngvpIMISKVHldqgleylpnelrylhwheypskalpfdfepenlvklnlpysKVVQIWEGKKRAFKLKYVDihnsqylirmpdlsetpnlertnlkncinltcvpssvqnfnHLSMLCFEGckslrsfpsnlhfmspikidfsscfnltefpqisgnitdLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSicklkslhvlvlddcskleRFPEILEKMESVKCISLERtaitelpssfanleglkdlyiggsslrqlnlsrndseslpaSITQLSQLRSlhlkdcsmlsslpelpqslelldaenckqlqFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRlfdenkyshikgpsiilpgseipewfsnqssgssitvkppqnccrNLIGFALCAVldyneripsgfssVFCEYRFEVNALSGIEHVYENCLILASthelidsdhvvlgfnpcwnvgdgddhRIFLKFFDIHKHHTAISFEFIcdsykvkscgvcpvyanpsetkpntfTLKFATRigklddkaaspsgtsdeeelepricsmlhfpryvqcpn
Flexible Loop (DISEMBL)
mfldlskitsihlspqafaNMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLStsicklkslhvlvlddcsKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVyanpsetkpntfTLKFATRigklddkaaspsgtsdeeelepRICSmlhfpryvqcpn
Low Complexity Region (SEG)
MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMlsslpelpqslellDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKFATRIGKLDDKAASPSGTSDEEELEPRICSMLHFPRYVQCPN
Disordered region (IsUnstruct)
*******ITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS********************************************SLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFS********TVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKFATRI**********************ICSMLHFPRYV****
Disordered Region (DISOPRED)
MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVY********************************************MLHF*R******
Disordered Region (DISEMBL)
MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKFATRIGKLD****************PRICSMLHFPRYVQCPN
Disordered Region (DISPRO)
MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVYANP*******************************EEELEPRICSMLHFPRYVQCP*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKFATRIGKLDDKAASPSGTSDEEELEPRICSMLHFPRYVQCPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	635	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.491	0.164	0.389	9e-48
Q40392	1144	TMV resistance protein N	N/A	no	0.672	0.373	0.299	2e-40
O82500	1095	Putative disease resistan	no	no	0.609	0.353	0.283	6e-36
Q9FH83	1288	Probable WRKY transcripti	no	no	0.817	0.402	0.256	6e-33
Q9FL92	1372	Probable WRKY transcripti	no	no	0.814	0.376	0.254	8e-33
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.525	0.256	0.306	3e-28
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.770	0.303	0.238	2e-26
P0CB16	1201	Putative disease resistan	no	no	0.371	0.196	0.265	4e-11
B0W6M9	628	Leucine-rich repeat prote	N/A	no	0.548	0.554	0.231	6e-10
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.396	0.246	0.230	2e-09

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  192 bits (487), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 130/334 (38%), Positives = 177/334 (52%), Gaps = 22/334 (6%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFY---MPEHNGVPIMISKVHLDQGLEYLPNEL 57
            +FLD+  +     +P  F  M NLR LK Y     E +GV          QGLEYLP++L
Sbjct: 1156 IFLDMLNL-KFDANPNVFEKMCNLRLLKLYCSKAEEKHGV-------SFPQGLEYLPSKL 1207

Query: 58   RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF--------KLKYVDIHN 109
            R LHW  YP  +LP  F PENLV+LNLP S   ++W+GKK  F        KLK + +  
Sbjct: 1208 RLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSY 1267

Query: 110  SQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHF 169
            S  L ++P LS   NLE  +L+ C +L  +  S+     L  L  +GC  L + PS +  
Sbjct: 1268 SDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDL 1327

Query: 170  MSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKR 229
             S   ++ S C  L  FP+IS N+ +L +  T IQE+PSSI+ L  LEKL +     LK 
Sbjct: 1328 ESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKN 1387

Query: 230  LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKD 289
            L TSI KLK L  L L  C  LERFP+   +M+ ++ + L RT I ELPSS + L  L +
Sbjct: 1388 LPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDE 1447

Query: 290  LYIGGSSLRQ---LNLSRNDSESLPASITQLSQL 320
            L    S        N + N +E +P+  ++L  L
Sbjct: 1448 LLFVDSRRNSPVVTNPNANSTELMPSESSKLEIL 1481

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  167 bits (424), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 154/514 (29%), Positives = 234/514 (45%), Gaps = 87/514 (16%)

Query: 9    TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSK 68
            +++  S QA  NM  LR   F M          S  H    ++YLPN LR      YP +
Sbjct: 540  STLRFSNQAVKNMKRLRV--FNMGR--------SSTHY--AIDYLPNNLRCFVCTNYPWE 587

Query: 69   ALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERT 128
            + P  FE + LV L L ++ +  +W   K    L+ +D+  S+ L R PD +  PNLE  
Sbjct: 588  SFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYV 647

Query: 129  NLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ 188
            NL  C NL  V  S+   + +  L    CKSL+ FP  ++  S   +   SC +L + P+
Sbjct: 648  NLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEKLPE 706

Query: 189  ISGNITDLI---LSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLV 244
            I G +   I   +  + I+E+PSSI +  T++ KL +     L  L +SIC+LKSL  L 
Sbjct: 707  IYGRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLS 766

Query: 245  LDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANL--------EGLKD------- 289
            +  CSKLE  PE +  +++++      T I   PSS   L         G KD       
Sbjct: 767  VSGCSKLESLPEEIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFP 826

Query: 290  ------------------LYIGG--------SSLRQLNLSRNDSESLPASITQLSQLRSL 323
                              L  GG        SSL++L+LSRN+ E LP+SI QL  L+SL
Sbjct: 827  PVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSL 886

Query: 324  HLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLN 383
             LKDC  L+ LPELP  L  L  +    L+FI  +++  +++    L+ A   ++ + L 
Sbjct: 887  DLKDCQRLTQLPELPPELNELHVDCHMALKFIHYLVTKRKKLHRVKLDDAHN-DTMYNL- 944

Query: 384  SACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSE 443
                 F ++    ++   ++   +DS          +  +F    Y             +
Sbjct: 945  -----FAYTMFQNISSMRHDISASDS---------LSLTVFTGQPYP-----------EK 979

Query: 444  IPEWFSNQSSGSSITVKPPQNCC--RNLIGFALC 475
            IP WF +Q   SS++V  P+N       +GFA+C
Sbjct: 980  IPSWFHHQGWDSSVSVNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  152 bits (385), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 143/504 (28%), Positives = 224/504 (44%), Gaps = 117/504 (23%)

Query: 3   LDLSKITS-IHLSPQAFANMPNLRFLKFYMPEHNGVPI---MISKVHL-DQGLEYLPNEL 57
           LD+ +I   +++S + F  M NL +LKFYM      PI   M  K+ L ++GL YLP +L
Sbjct: 534 LDMCEIKEELYISEKTFEEMRNLVYLKFYMSS----PIDDKMKVKLQLPEEGLSYLP-QL 588

Query: 58  RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP 117
           R LHW  YP +  P  F PE LV+LN+ +SK+ ++W G +    L+ +++++S+ L  +P
Sbjct: 589 RLLHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTMNLNSSRNLEILP 648

Query: 118 DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDF 177
           +L E   L R +L  C +L  +PSS++N  HL +L    CK L   P+N++  S   + F
Sbjct: 649 NLMEATKLNRLDLGWCESLVELPSSIKNLQHLILLEMSCCKKLEIIPTNINLPSLEVLHF 708

Query: 178 SSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKL 237
             C  L  FP+IS NI  L L  TAI EVP S++  + ++++    CM   ++   +   
Sbjct: 709 RYCTRLQTFPEISTNIRLLNLIGTAITEVPPSVKYWSKIDEI----CMERAKVKRLVHVP 764

Query: 238 KSLHVLVLDDCSKLERFPEILEKMESVKCISLER-TAITELPSSFANLEGLKDLYIGGSS 296
             L  L L +  +LE  P  L+ +  ++ I +     I  LP                  
Sbjct: 765 YVLEKLCLRENKELETIPRYLKYLPRLQMIDISYCINIISLP------------------ 806

Query: 297 LRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIP 356
                        LP S++ L+                           A NC+ LQ   
Sbjct: 807 ------------KLPGSVSALT---------------------------AVNCESLQ--- 824

Query: 357 EILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHM 416
            IL G             F N +  LN       F NCLKL ++A  +I         H 
Sbjct: 825 -ILHG------------HFRNKSIHLN-------FINCLKLGQRAQEKI---------HR 855

Query: 417 AIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCA 476
           ++        ++ S+I   + +LPG  +P +FS +S+GSSI +   +        F +C 
Sbjct: 856 SVYI------HQSSYI---ADVLPGEHVPAYFSYRSTGSSIMIHSNKVDLSKFNRFKVCL 906

Query: 477 VLDYNERIPS----GFSSVFCEYR 496
           VL   +R        +   FC+ R
Sbjct: 907 VLGAGKRFEGCDIKFYKQFFCKPR 930

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  142 bits (359), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 156/608 (25%), Positives = 262/608 (43%), Gaps = 89/608 (14%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQG-LEYLPNELRY 59
            +FLD S +    L P AF NM NLR LK Y       P+    ++   G L  LPNELR 
Sbjct: 504  LFLDTSNL-RFDLQPSAFKNMLNLRLLKIYCSNPEVHPV----INFPTGSLHSLPNELRL 558

Query: 60   LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDL 119
            LHW  YP K+LP +F+P +LV++N+PYS++ ++W G K    L+ + + +S +L+ + DL
Sbjct: 559  LHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHLVDIDDL 618

Query: 120  SETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
             +  NLE  +L                        +GC  L++FP+    +    ++ S 
Sbjct: 619  LKAENLEVIDL------------------------QGCTRLQNFPAAGRLLRLRVVNLSG 654

Query: 180  CFNLTEFPQISGNITDLILSETAIQEVPSS---------IECLTNLEKLY--INRCMRLK 228
            C  +    +I  NI  L L  T I  +P S         +  LT +  L   + R   L 
Sbjct: 655  CIKIKSVLEIPPNIEKLHLQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERLTSLL 714

Query: 229  RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLK 288
              ++S   L  L  L L DCS L+  P     M ++    L+ +  + L S       LK
Sbjct: 715  ESNSSCQDLGKLICLELKDCSCLQSLP----NMANLDLNVLDLSGCSSLNSIQGFPRFLK 770

Query: 289  DLYIGGSSLRQ----------LNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELP 338
             LY+GG+++R+          LN   +   SLP ++  L  L+ L L  CS L ++   P
Sbjct: 771  QLYLGGTAIREVPQLPQSLEILNAHGSCLRSLP-NMANLEFLKVLDLSGCSELETIQGFP 829

Query: 339  QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLN 398
            ++L+ L       L+ +P++   LE ++A   +               + + F+N   L+
Sbjct: 830  RNLKELYFAGTT-LREVPQLPLSLEVLNAHGSDSEKL----------PMHYKFNNFFDLS 878

Query: 399  EKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSIT 458
            ++  N+ L  +  +++H+     R + +   +     S   P         +  SGSS+ 
Sbjct: 879  QQVVNDFLLKTLTYVKHIP----RGYTQELINKAPTFSFSAPSHTNQNATFDLQSGSSVM 934

Query: 459  VKPPQNCCRNLIGFALCAVL----DYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLI 514
             +   +    L+GF +   +    DY +    G S V C +  +      IE  + +C  
Sbjct: 935  TRLNHSWRNTLVGFGMLVEVAFPEDYCDATDVGISCV-CRWSNKEGRSCRIERKF-HCWA 992

Query: 515  LASTHELIDSDH--VVLGFNPCWNVGDGDDHRIF-----LKFFDIHKHHTAISFEFICDS 567
                   +  DH  V    N   + G+G+D  I+      +FF I++    ++     D 
Sbjct: 993  PWQVVPKVRKDHTFVFSDVNMRPSTGEGNDPDIWAGLVVFEFFPINQQTKCLN-----DR 1047

Query: 568  YKVKSCGV 575
            + V+ CGV
Sbjct: 1048 FTVRRCGV 1055

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  142 bits (358), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 170/669 (25%), Positives = 272/669 (40%), Gaps = 152/669 (22%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYM--PEHNGVPIMISKVHLDQGLEYLPNELR 58
            MFLD S + S  +   AF NM NLR  K Y   PE + V        L   L  LPN LR
Sbjct: 497  MFLDTSNL-SFDIKHVAFDNMLNLRLFKIYSSNPEVHHV-----NNFLKGSLSSLPNVLR 550

Query: 59   YLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD 118
             LHW  YP + LP +F+P +LV++N+PYS++ ++W G K    LK + + +SQ L+ + D
Sbjct: 551  LLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLVDIDD 610

Query: 119  LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFS 178
            L +  NLE  +L                        +GC  L+SFP+    +    ++ S
Sbjct: 611  LLKAQNLEVVDL------------------------QGCTRLQSFPATGQLLHLRVVNLS 646

Query: 179  SCFNLTEFPQISGNITDLILSETAIQEVPSSI------------------ECLTNLEKLY 220
             C  +  FP+I  NI  L L  T I E+P SI                    ++NLE+  
Sbjct: 647  GCTEIKSFPEIPPNIETLNLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSD 706

Query: 221  INRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS 280
            +     L ++STS      L  L L+DCS+L   P ++  +E +K + L  +  +EL + 
Sbjct: 707  LKPLTSLMKISTSYQNPGKLSCLELNDCSRLRSLPNMV-NLELLKALDL--SGCSELETI 763

Query: 281  FANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQS 340
                  LK+LY+ G+++RQ                                  +P+LPQS
Sbjct: 764  QGFPRNLKELYLVGTAVRQ----------------------------------VPQLPQS 789

Query: 341  LELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEK 400
            LE  +A  C  L+ I                               V + FSNC  L+ +
Sbjct: 790  LEFFNAHGCVSLKSI-----------------------RLDFKKLPVHYTFSNCFDLSPQ 826

Query: 401  ANNEILADSQRWI--------QHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQS 452
              N+ L  +   +        +H+   + +    +     +  +  L  S      +NQ+
Sbjct: 827  VVNDFLVQAMANVIAKHIPRERHVTGFSQKTVQRSSRDSQQELNKTLAFSFCAPSHANQN 886

Query: 453  S------GSSITVKPPQNCCRNLIGFALCAVLDYNE----RIPSGFSSVFCEYRFEVNAL 502
            S      GSS   +   +    L+GFA+   + ++E        G S V C+++ +    
Sbjct: 887  SKLDLQPGSSSMTRLDPSWRNTLVGFAMLVQVAFSEGYCDDTDFGISCV-CKWKNK---- 941

Query: 503  SGIEHVYENCLILASTHELIDSDHVVLGF--NPCWNVGDGDDHRIF-----LKFFDIHKH 555
             G  H  E  L   +  + ++ DH  + F  N   +  +G+D  I+      +FF ++K 
Sbjct: 942  EGHSHRREINLHCWALGKAVERDHTFVFFDVNMRPDTDEGNDPDIWADLVVFEFFPVNKQ 1001

Query: 556  HTAISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKFATRIGKLDDKAASPSGTSDEE 615
               ++     DS  V  CGV  + A    T     +++  + +  LD      SG  DEE
Sbjct: 1002 RKPLN-----DSCTVTRCGVRLITAVNCNT-----SIENISPVLSLD--PMEVSGNEDEE 1049

Query: 616  ELEPRICSM 624
             L  R   +
Sbjct: 1050 VLRVRYAGL 1058

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 124/405 (30%), Positives = 189/405 (46%), Gaps = 71/405 (17%)

Query: 13  LSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPF 72
           +  ++F  M NL++L+  +  +  +P         Q L YLP +LR L W + P K+LP 
Sbjct: 537 IDKESFKGMRNLQYLE--IGYYGDLP---------QSLVYLPLKLRLLDWDDCPLKSLPS 585

Query: 73  DFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKN 132
            F+ E LV L + YSK+ ++WEG      LK +++  S  L  +PDLS   NLE  +L  
Sbjct: 586 TFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVG 645

Query: 133 CINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGN 192
           C +L  +PSS+QN   L  L    CK L SFP++L+  S   ++ + C NL  FP I   
Sbjct: 646 CKSLVTLPSSIQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFPAIKMG 705

Query: 193 ITDLIL----SETAIQE------VPSS---IECLTNL-------EKL-YIN-RCMRLKRL 230
            +D+      +E  +++      +P+    ++CLT         E+L ++N R  + ++L
Sbjct: 706 CSDVDFPEGRNEIVVEDCFWNKNLPAGLDYLDCLTRCMPCEFRPEQLAFLNVRGYKHEKL 765

Query: 231 STSICKLKSLHVLVLDDCSKLERFPEILE--KMESV---KCISL---------------- 269
              I  L SL  + L +   L   P++ +  K+ES+    C SL                
Sbjct: 766 WEGIQSLGSLEGMDLSESENLTEIPDLSKATKLESLILNNCKSLVTLPSTIGNLHRLVRL 825

Query: 270 ---ERTAITELPSSFANLEGLKDLYIGG-SSLRQ----------LNLSRNDSESLPASIT 315
              E T +  LP+   NL  L+ L + G SSLR           L L     E +P++I 
Sbjct: 826 EMKECTGLEVLPTD-VNLSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIG 884

Query: 316 QLSQLRSLHLKDCSMLSSLPELPQ--SLELLDAENCKQLQFIPEI 358
            L +L  L +K C+ L  LP      SLE LD   C  L+  P I
Sbjct: 885 NLHRLVRLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLI 929

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  121 bits (303), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 145/607 (23%), Positives = 263/607 (43%), Gaps = 118/607 (19%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            +FLD S +    +   AF NM NL+FLK Y    N     IS ++  +GL+ LP ELR L
Sbjct: 522  IFLDTSNV-KFDVKHDAFKNMFNLKFLKIY----NSCSKYISGLNFPKGLDSLPYELRLL 576

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            HW  YP ++LP DF+  +LVKL++PYS++ ++    K    LK + + +S  L+    L 
Sbjct: 577  HWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRVKDLVMLKRLILSHSLQLVECDILI 636

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSF---PSNLH--FMSPIKI 175
               N+E  +L+ C  L   P + Q   +L ++   GC  ++ F   P N+    +   +I
Sbjct: 637  YAQNIELIDLQGCTGLQRFPDTSQ-LQNLRVVNLSGCTEIKCFSGVPPNIEELHLQGTRI 695

Query: 176  DFSSCFNLTEFPQIS---GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST 232
                 FN T  P++      + +L+ + + ++ +   +EC+TNL  +  N  +       
Sbjct: 696  REIPIFNATHPPKVKLDRKKLWNLLENFSDVEHI--DLECVTNLATVTSNNHV------- 746

Query: 233  SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292
                +  L  L +  CS L   P+++  +ES+K + L  +  +EL         LK LY+
Sbjct: 747  ----MGKLVCLNMKYCSNLRGLPDMV-SLESLKVLYL--SGCSELEKIMGFPRNLKKLYV 799

Query: 293  GGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQL 352
            GG+++R+                                  LP+LP SLE L+A  CK L
Sbjct: 800  GGTAIRE----------------------------------LPQLPNSLEFLNAHGCKHL 825

Query: 353  QFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRW 412
            + I         +D   L +                F+FSNC +     +++++A+   +
Sbjct: 826  KSI--------NLDFEQLPR---------------HFIFSNCYRF----SSQVIAE---F 855

Query: 413  IQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLI-- 470
            ++   +A+     + +   IK P +I+    IP    +    SS  ++  +N   +L+  
Sbjct: 856  VEKGLVASLARAKQEEL--IKAPEVIIC---IP---MDTRQRSSFRLQAGRNAMTDLVPW 907

Query: 471  ------GFALCAVL----DYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHE 520
                  GF++  V+    DY+  +      V   ++   N    I   +  C       +
Sbjct: 908  MQKPISGFSMSVVVSFQDDYHNDVGLRIRCVGT-WKTWNNQPDRIVERFFQCWAPTEAPK 966

Query: 521  LIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEF--ICDSYKVKSCGVCPV 578
            ++ +DH+ + ++   +  D +++ I +   ++      +S E   +  S KV  CGV  +
Sbjct: 967  VV-ADHIFVLYDTKMHPSDSEENHISMWAHEVKFEFHTVSGENNPLGASCKVTECGVEVI 1025

Query: 579  YANPSET 585
             A   +T
Sbjct: 1026 TAATGDT 1032

Arabidopsis thaliana (taxid: 3702)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 70.5 bits (171), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 140/324 (43%), Gaps = 88/324 (27%)

Query: 93  WEGKKRAFK----LKYVDIHNSQYLIRMP---------DLSETPNLERTNLKNCINLTCV 139
           ++GK + F     L+++D   ++ +IR+P         D S  P L R  L+NC  L  +
Sbjct: 589 YKGKNKNFAQLQLLEHLDFSETK-IIRLPIFHLKDSTNDFSTMPILTRLLLRNCTRLKRL 647

Query: 140 PS-------------SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEF 186
           P                 +   +  +C E  K LR             +D S     T  
Sbjct: 648 PQLRPLTNLQILDACGATDLVEMLEVCLEEKKELRI------------LDMSK----TSL 691

Query: 187 PQISGNITD-------LILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS------ 233
           P+++  I D       L+ + + I+E+PS IE LT+LE   ++ C++LK ++ S      
Sbjct: 692 PELADTIADVVNLNKLLLRNCSLIEELPS-IEKLTHLEVFDVSGCIKLKNINGSFGEMSY 750

Query: 234 -----------------ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER-TAIT 275
                            I +L +L  L++  CSKL+  P  LEK+ +++   +   T + 
Sbjct: 751 LHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPN-LEKLTNLEIFDVSGCTELE 809

Query: 276 ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP 335
            +  SF NL          S L ++NLS  +   LP  I++LS L+ L L++CS L +LP
Sbjct: 810 TIEGSFENL----------SCLHKVNLSETNLGELPNKISELSNLKELILRNCSKLKALP 859

Query: 336 ELPQ--SLELLDAENCKQLQFIPE 357
            L +   L + D   C  L  I E
Sbjct: 860 NLEKLTHLVIFDVSGCTNLDKIEE 883

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 176/428 (41%), Gaps = 80/428 (18%)

Query: 5   LSKITSIHLSPQAFANMP----NLRFLKFYMPEHNG---VPIMISKVH------------ 45
           LS + ++ L+  +  ++P    NL+ LK     HN    +P +I K+H            
Sbjct: 192 LSNLKTLALNENSLTSLPDSLQNLKALKVLDLRHNKLSEIPDVIYKLHTLTTLYLRFNRI 251

Query: 46  --LDQGLEYLPN----ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRA 99
             +   L+ L +     LR    HE P+          NL  L+L ++ +  + E     
Sbjct: 252 KVVGDNLKNLSSLTMLSLRENKIHELPAAIGHL----RNLTTLDLSHNHLKHLPEAIGNC 307

Query: 100 FKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS 159
             L  +D+ ++  L     +    NL+R  L+    LT +P S++N  H+     EG  S
Sbjct: 308 VNLTALDLQHNDLLDIPETIGNLANLQRLGLRYN-QLTAIPVSLRNCIHMDEFNVEG-NS 365

Query: 160 LRSFP-------SNLHFMS-------------PIKIDFSSCFNLTEFPQI---------- 189
           +   P       SNL  ++             P +    +  N+ E  QI          
Sbjct: 366 ISQLPDGLLASLSNLTTITLSRNAFHSYPSGGPAQFTNVTSINM-EHNQIDKIQYGIFSR 424

Query: 190 SGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS 249
           +  +T L + E A+  +P  I   + + +L       L +L   I  L++L +L+L + +
Sbjct: 425 AKGLTKLNMKENALTSLPLDIGTWSQMVELNFG-TNSLAKLPDDIHCLQNLEILILSN-N 482

Query: 250 KLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQ---------- 299
            L+R P  +  ++ ++ + LE   +  LPS    L  L+ L +  ++L+           
Sbjct: 483 MLKRIPNTIGNLKKLRVLDLEENRLESLPSEIGLLHDLQKLILQSNALQSLPRTIGHLTN 542

Query: 300 ---LNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP---ELPQSLELLDAENCKQLQ 353
              L++  N+ + LP  I  L  L SL++ D + L  LP    L Q+L ++  ENC    
Sbjct: 543 LTYLSVGENNLQYLPEEIGTLENLESLYINDNASLVKLPYELALCQNLAIMSIENCPLSA 602

Query: 354 FIPEILSG 361
             PE++ G
Sbjct: 603 LPPEVVGG 610

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 64.7 bits (156), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 131/295 (44%), Gaps = 43/295 (14%)

Query: 47  DQGLEYLP-----NELRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAF 100
           + GL+ LP     + L+ L   + P + LP  F + + L  L+L  +K+ ++  G  +  
Sbjct: 280 ETGLKSLPPVGGGSALQRLTIEDSPLEQLPAGFADLDQLASLSLSNTKLEKLSSGIGQLP 339

Query: 101 KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL 160
            LK + + ++  L R+P           +L     LT +   +      ++    G  SL
Sbjct: 340 ALKSLSLQDNPKLERLPK----------SLGQVEELTLIGGRIH-----ALPSASGMSSL 384

Query: 161 RSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLY 220
           +    +   ++ +  DF +           GN+  + LS T ++++P+SI  L  L+ L 
Sbjct: 385 QKLTVDNSSLAKLPADFGAL----------GNLAHVSLSNTKLRDLPASIGNLFTLKTLS 434

Query: 221 INRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS 280
           +    +L  L  S  +L  L  L L + +++   P  +    S++ ++++ TA+  LP+ 
Sbjct: 435 LQDNPKLGSLPASFGQLSGLQELTL-NGNRIHELPS-MGGASSLQTLTVDDTALAGLPAD 492

Query: 281 FANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP 335
           F  L  L  L +  + LR+          LPA+   L  L++L L+    L++LP
Sbjct: 493 FGALRNLAHLSLSNTQLRE----------LPANTGNLHALKTLSLQGNQQLATLP 537

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	635
255537139	1137	leucine-rich repeat-containing protein,	0.858	0.479	0.356	4e-81
297813715	1212	hypothetical protein ARALYDRAFT_327329 [	0.806	0.422	0.350	4e-79
224127750	1018	tir-nbs-lrr resistance protein [Populus	0.795	0.496	0.375	4e-79
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.807	0.456	0.363	5e-78
15234388	1219	TIR-NBS-LRR class disease resistance pro	0.858	0.447	0.338	2e-77
227438287	1207	disease resistance protein [Brassica rap	0.806	0.424	0.351	2e-76
359495285	1557	PREDICTED: TMV resistance protein N-like	0.856	0.349	0.341	1e-72
255563202	1158	leucine-rich repeat containing protein,	0.691	0.379	0.341	3e-72
225460354	1174	PREDICTED: TMV resistance protein N-like	0.886	0.479	0.319	1e-69
227438275	1226	disease resistance protein [Brassica rap	0.870	0.451	0.334	3e-69

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 315/594 (53%), Gaps = 49/594 (8%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            M L+ S I  I L+  AF  M NLRFLKFY    +G     +K+ L QGL+ L NELRYL
Sbjct: 528  MCLNTSMINKIELNSNAFGRMYNLRFLKFYQSYIHGGFKECTKIRLPQGLDSLSNELRYL 587

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            HWH YP K+LP      NLV L LPYSKV ++W+G K   KLK +D+  SQ LIR+ +L+
Sbjct: 588  HWHGYPLKSLPARIHLMNLVVLVLPYSKVKRLWKGCKDLKKLKVIDLSYSQALIRITELT 647

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK-IDFSS 179
               NL    L  C NL  +PS+ + +  LS L    C  L S PS++  +  ++ +    
Sbjct: 648  TASNLSYMKLSGCKNLRSMPSTTR-WKSLSTLEMNYCTKLESLPSSICKLKSLESLSLCG 706

Query: 180  CFNLTEFPQI---SGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICK 236
            C NL  FP+I      +  L+L+ TAI+E+PSSIE L  L  +Y+  C  L  L  S C 
Sbjct: 707  CSNLQSFPEILESMDRLKVLVLNGTAIKELPSSIERLKGLSSIYLENCRNLAHLPESFCN 766

Query: 237  LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS 296
            LK+L+ L L  C KLE+ PE L  + +++ +S+    + +LPS   +L          S 
Sbjct: 767  LKALYWLFLTFCPKLEKLPEKLSNLTTLEDLSVGVCNLLKLPSHMNHL----------SC 816

Query: 297  LRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIP 356
            + +L+LS N  + LP S   L  LR L +  C  L SLPE+P SL  +DA +C+ L    
Sbjct: 817  ISKLDLSGNYFDQLP-SFKYLLNLRCLDISSCRRLRSLPEVPHSLTDIDAHDCRSL---- 871

Query: 357  EILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHM 416
            E +SGL+++              +T      K +F++C K++E A ++ LAD+Q WIQ +
Sbjct: 872  ETISGLKQI----------FQLKYTHTFYDKKIIFTSCFKMDESAWSDFLADAQFWIQKV 921

Query: 417  AIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVK-PPQNCCRNLIGFALC 475
            A+   R  DE  +      SI  PGS+IP+WF  QS GSSI ++  P++   NL+GF LC
Sbjct: 922  AM---RAKDEESF------SIWYPGSKIPKWFGYQSEGSSIVIQLHPRSHKHNLLGFTLC 972

Query: 476  AVLDYNERIP--SGFSSVFCEYRFE--VNALSGIEHVYENCLILASTHELIDSDHVVLGF 531
             VL + +     + F  V C Y+ +      +  + VY +   ++  ++ + SDHV+L +
Sbjct: 973  VVLAFEDEFEYHNSFFDVLCVYQLKNYRGEYTDCKEVYSSRTHVSGKNKYVGSDHVILFY 1032

Query: 532  NPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFIC-DSYKVKSCGVCPVYANPSE 584
            +P ++  + ++       F+ +  +     E  C  S  VK C   P+Y+   E
Sbjct: 1033 DPNFSSTEANELSYNEASFEFYWQNN----ESCCMQSSMVKKCAAIPLYSREEE 1082

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813715|ref|XP_002874741.1| hypothetical protein ARALYDRAFT_327329 [Arabidopsis lyrata subsp. lyrata] gi|297320578|gb|EFH51000.1| hypothetical protein ARALYDRAFT_327329 [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 304/591 (51%), Gaps = 79/591 (13%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            +FLD SK+ ++ LS +A   M NL++LK Y    +    +  K+HL +GL+YLPNEL YL
Sbjct: 533  IFLDTSKLRAMRLSAKALKGMYNLKYLKIYDSHCSRGCEVEFKLHLRKGLDYLPNELTYL 592

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            HWH YP +++P DF+P+NLV L LP+S++ +IW+ +K A  LK+VD+ +S  L +   L+
Sbjct: 593  HWHGYPLQSIPLDFDPKNLVDLKLPHSQLAEIWDDEKDAGMLKWVDLSHSLNLHQCLGLA 652

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
               NLER NL+ C +L  +P+++     L  L    C SLRS P  L   S   +  S C
Sbjct: 653  NAQNLERLNLEGCTSLKKLPTTINGLEKLVYLNLRDCTSLRSLPKGLKTQSLQTLILSGC 712

Query: 181  FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240
              L +FP IS N+  L+L  TAI+ +P SIE L  L  L +  C +LK LS+ + KLK L
Sbjct: 713  SRLKKFPLISENVEVLLLDGTAIKSLPESIETLRRLALLNLKNCKKLKHLSSDLYKLKCL 772

Query: 241  HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS--SFANLEG------------ 286
              L+L  CS+LE FPEI E MES++ + ++ TAITE+P     +N++             
Sbjct: 773  QELILSGCSRLEVFPEIKEDMESLEILLMDDTAITEMPKMMHLSNIQTFSLCGTSSQVSV 832

Query: 287  -------------LKDLYIGGSSLRQL-------------NLSRNDSESLPASITQLSQL 320
                         L DLY+   SL +L              LS N+ E+LP S  QL  L
Sbjct: 833  SMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPESFNQLHNL 892

Query: 321  RSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAF 380
            +   LK C ML SLP LPQ+L+ LDA  C+ L+ +   L+ L     +V E+   +    
Sbjct: 893  KWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLENPLTPL-----TVGERIHSM---- 943

Query: 381  TLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKG------ 434
                    F+FSNC KLN+        D+Q  + H  I +  + + +   + +G      
Sbjct: 944  --------FIFSNCYKLNQ--------DAQSLVGHARIKSQLMANASVKRYYRGFIPEPL 987

Query: 435  PSIILPGSEIPEWFSNQSSGSSITVK-PPQNCCRNLIGFALCAVLDYNERIPSGFS-SVF 492
              I    ++IP WF +Q  G S+ +  PP  C  + +G AL  V+ + +   S    SV 
Sbjct: 988  VGICYAATDIPSWFCHQRLGRSLEIPLPPHWCDTDFVGLALSVVVSFMDYEDSAKRFSVK 1047

Query: 493  CEYRFEVNALSGIEHVY------ENCLILASTHELIDSDHVVLGFNPCWNV 537
            C  +FE    S     +      E C  L+     + SDHV +G+N C++V
Sbjct: 1048 CCGKFENQDGSFTRFDFTLAGWNEPCGSLSHEPRKLASDHVFMGYNSCFHV 1098

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127750|ref|XP_002329168.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870949|gb|EEF08080.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 238/634 (37%), Positives = 323/634 (50%), Gaps = 129/634 (20%)

Query: 3    LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISK--VHLD-QGLEYLPNELRY 59
            LD+SK+  +HL    FA M +LRFLKFY P +     M SK  VHL   GL+YL +EL+Y
Sbjct: 448  LDISKMPEMHLESDTFARMNSLRFLKFYHPFY----FMDSKDKVHLPLSGLKYLSDELKY 503

Query: 60   LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDL 119
            LHWH +P+K+LP +F  EN+V L L  S+V Q+W G +    L+++D+  S YL+ +PDL
Sbjct: 504  LHWHRFPAKSLPQNFCAENIVDLTLHSSRVEQLWTGVQDLLNLRWIDLSRSTYLLEIPDL 563

Query: 120  SETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL------------------- 160
            S   NLE  +L  C +L  V SS+Q+   L +L   GCK+L                   
Sbjct: 564  SRAKNLEYIDLSFCESLLEVHSSIQHLEKLEILILSGCKNLGIVPKRIESKFLRILDLSH 623

Query: 161  ------------------------RSFPSNLHFMSPIKI-DFSSCFNLTEFPQISGNITD 195
                                       P ++  +  I+I D S C N+T+FPQI GNI  
Sbjct: 624  CKKVRKCPEISGYLEELMLQGTAIEELPQSISKVKEIRILDLSGCSNITKFPQIPGNIKQ 683

Query: 196  LILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP 255
            L L  T I+EVPSSIE L  L  L +N C +L  L T ICKLK L  L L  C KLE FP
Sbjct: 684  LRLLWTVIEEVPSSIEFLATLGVLEMNFCEQLSSLPTCICKLKCLERLELSYCPKLESFP 743

Query: 256  EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDS-ESLPASI 314
            EILE MES+KC+ L  TAI ELPSS   L          S L  L L+R D+  SLP+ I
Sbjct: 744  EILEPMESLKCLDLSGTAIKELPSSIKFL----------SCLYMLQLNRCDNLVSLPSFI 793

Query: 315  TQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKAT 374
             +L  L+ L L  C  L SLPELP S+E L+A  C+ L+ +            S+ +++ 
Sbjct: 794  EKLPVLKYLKLNYCKSLLSLPELPPSVEFLEAVGCESLETL------------SIGKESN 841

Query: 375  FLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKG 434
            F    + LN       F+NC KL++K    +LAD+Q  IQ   +              + 
Sbjct: 842  F----WYLN-------FANCFKLDQKP---LLADTQMKIQSGKMR-------------RE 874

Query: 435  PSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCE 494
             +IILPGSEIP WF +QS GSS+ +K P NC ++  GFA   V  +    P   + + C 
Sbjct: 875  VTIILPGSEIPGWFCDQSMGSSVAIKLPTNCHQH-NGFAFGMVFVF----PDPPTELQCN 929

Query: 495  YRF--EVNALSGIEHVYENCLILAS-THEL--IDSDHVVLGFNPCWNVGDGDDHRIFLKF 549
              F  E +A    +  ++    L++  +EL  ++SD ++L +NPC           F+K 
Sbjct: 930  RIFICECHARGENDEHHDVIFNLSTCAYELRSVESDQMLLLYNPCE----------FVKR 979

Query: 550  FDIHKHHTA-ISFEFICDS-------YKVKSCGV 575
              I ++    ISFEF  D         KVK CGV
Sbjct: 980  DCISQYSGKEISFEFYLDEPSGLQNRCKVKRCGV 1013

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  298 bits (763), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 228/628 (36%), Positives = 315/628 (50%), Gaps = 115/628 (18%)

Query: 3    LDLSKITSIHLSPQAFANMPNLRFLKFYMPEH---NGVPIMISK--VHL-DQGLEYLPNE 56
            LD+S+   +HL   AF+ M  LR LKF+   H   + + IM +K  VHL   GL+YL +E
Sbjct: 536  LDISESREMHLKSDAFSRMDRLRILKFF--NHFSLDEIFIMDNKDKVHLPHSGLDYLSDE 593

Query: 57   LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRM 116
            LRYLHW  +P K LP  F  EN+V+L  P SK+ ++W G +    L+ +D+  S YL+ +
Sbjct: 594  LRYLHWDGFPLKTLPQSFCAENIVELIFPDSKIEKLWTGVQDLVHLRRMDLSGSPYLLEI 653

Query: 117  PDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL--------- 167
            PDLS   N+E  NLK C +L  V  S+Q    L +L    C +LRS PS +         
Sbjct: 654  PDLSMAENIESINLKFCKSLIEVNPSIQYLTKLEVLQLSYCDNLRSLPSRIGSKVLRILD 713

Query: 168  --HFM-----------SPI--KIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIEC 212
              H +           SP+  K+D   C N+T+FP+ISGNI  L L  TAI+EVPSSIE 
Sbjct: 714  LYHCINVRICPAISGNSPVLRKVDLQFCANITKFPEISGNIKYLYLQGTAIEEVPSSIEF 773

Query: 213  LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272
            LT L +LY+  C +L  + +SICKLKSL VL L  CSKLE FPEI+E MES++ + L+ T
Sbjct: 774  LTALVRLYMTNCKQLSSIPSSICKLKSLEVLGLSGCSKLENFPEIMEPMESLRRLELDAT 833

Query: 273  AITELPSSFANLEGLKDLYIGGS-------------SLRQLNLSRNDSESLPASITQLSQ 319
            AI ELPSS   L+ L  L +G +             SL  L+L     + LP+SI  L  
Sbjct: 834  AIKELPSSIKYLKFLTQLKLGVTAIEELSSSIAQLKSLTHLDLGGTAIKELPSSIEHLKC 893

Query: 320  LRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEI-LSGLEEVDASVLEKATFLNS 378
            L+ L L     +  LPELP SL  LD  +CK LQ +    L   +E++            
Sbjct: 894  LKHLDLSGTG-IKELPELPSSLTALDVNDCKSLQTLSRFNLRNFQELN------------ 940

Query: 379  AFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGP--S 436
                        F+NC KL++K   +++AD Q  IQ                 IKG    
Sbjct: 941  ------------FANCFKLDQK---KLMADVQCKIQS--------------GEIKGEIFQ 971

Query: 437  IILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYR 496
            I+LP SEIP WF  Q+ GSS+T K P N C  + G A C V      + S  ++  C  +
Sbjct: 972  IVLPKSEIPPWFRGQNMGSSVTKKLPLN-CHQIKGIAFCIVFASPTPLLSDCANFSC--K 1028

Query: 497  FEVNALSGIEHVYENCLIL-------ASTHELIDSDHVVLGFNPCWN--VGDGDDHRIFL 547
             +  + +G EH + N L         A+  +L DSDH++L +         +     +  
Sbjct: 1029 CDAKSDNG-EHDHVNLLWYDLDPQPKAAVFKLDDSDHMLLWYESTRTGLTSEYSGSEVTF 1087

Query: 548  KFFDIHKHHTAISFEFICDSYKVKSCGV 575
            +F+D  +H             K+K CGV
Sbjct: 1088 EFYDKIEHS------------KIKRCGV 1103

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234388|ref|NP_192938.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] gi|4586106|emb|CAB40942.1| putative disease resistance protein (TMV N-like) [Arabidopsis thaliana] gi|7267902|emb|CAB78244.1| putative disease resistance protein (TMV N-like) [Arabidopsis thaliana] gi|332657683|gb|AEE83083.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 215/635 (33%), Positives = 314/635 (49%), Gaps = 90/635 (14%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            +FLD SK+ ++ LS +AF  M NL++LK Y    +       K+HL +GL +LPNEL YL
Sbjct: 544  IFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFLPNELTYL 603

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            HWH YP +++P DF+P+NLV L LP+S++ +IW+ +K    LK+VD+ +S  L +   L+
Sbjct: 604  HWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLGLA 663

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
               NLER NL+ C +L  +PS++     L  L    C SLRS P  +   S   +  S C
Sbjct: 664  NAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGC 723

Query: 181  FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240
             +L +FP IS N+  L+L  T I+ +P SI+    L  L +  C +LK LS+ + KLK L
Sbjct: 724  SSLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCL 783

Query: 241  HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS---- 296
              L+L  CS+LE FPEI E MES++ + ++ T+ITE+P    +L  +K   + G+S    
Sbjct: 784  QELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMP-KMMHLSNIKTFSLCGTSSHVS 842

Query: 297  --------------LRQLNLSR-----------------------NDSESLPASITQLSQ 319
                          L  L LSR                       N+ E+LP S  QL+ 
Sbjct: 843  VSMFFMPPTLGCSRLTDLYLSRCSLYKLPDNIGGLSSLQSLCLSGNNIENLPESFNQLNN 902

Query: 320  LRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSA 379
            L+   LK C ML SLP LPQ+L+ LDA  C+ L+ +   L+ L     +V E+   +   
Sbjct: 903  LKWFDLKFCKMLKSLPVLPQNLQYLDAHECESLETLANPLTPL-----TVGERIHSM--- 954

Query: 380  FTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGP--SI 437
                     F+FSNC KLN+ A   ++  ++   Q MA A+ + +       +  P   I
Sbjct: 955  ---------FIFSNCYKLNQDAQASLVGHARIKSQLMANASAKRY---YRGFVPEPLVGI 1002

Query: 438  ILPGSEIPEWFSNQSSGSSITVK-PPQNCCRNLIGFALCAVLDYNERIPSGFS-SVFCEY 495
              P +EIP WF +Q  G S+ +  PP  C  N +G AL  V+ + +   S    SV C  
Sbjct: 1003 CYPATEIPSWFCHQRLGRSLEIPLPPHWCDINFVGLALSVVVSFKDYEDSAKRFSVKCCG 1062

Query: 496  RFEVNALSGIEHVY------ENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKF 549
             FE    S     +      E C  L+     + SDHV +G+N C+ V            
Sbjct: 1063 NFENKDSSFTRFDFTLAGWNEPCGSLSHESRKLTSDHVFMGYNSCFLVK----------- 1111

Query: 550  FDIHKH-----HTAISFEF-ICDSYKVKSCGVCPV 578
             ++H       +T  SFEF + D    K    C V
Sbjct: 1112 -NVHGESNSCCYTKASFEFYVTDDETRKKIETCEV 1145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438287|gb|ACP30633.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 208/592 (35%), Positives = 299/592 (50%), Gaps = 80/592 (13%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            +FLD SK   + L P AF  M NL++LK Y    +     + K+H  +GL++LP+EL YL
Sbjct: 535  IFLDTSKRGKLRLRPDAFKGMYNLKYLKIYDSRCSRGCEAVFKLHF-KGLDFLPDELAYL 593

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            HWH +P +  P DF+P+NLV L LP+S++ +IW   K A  LK+VD+ +S  L R+  L+
Sbjct: 594  HWHGFPLQRFPLDFDPKNLVDLKLPHSELEEIWGDDKVAGMLKWVDLSHSSNLCRLLGLA 653

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
            +  NLER NL+ C +L  +PSS+     L  L    C SL+S P      S   +  S C
Sbjct: 654  KAHNLERLNLEGCTSLKMLPSSINCLEKLVYLNLRECTSLKSLPEETKSQSLQTLILSGC 713

Query: 181  FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240
             +L +FP IS +I  L+L  TAI+ +P SIE  + L  L +  C RLK LS+++ KLK L
Sbjct: 714  SSLKKFPLISESIEVLLLDGTAIKSLPDSIETSSKLASLNLKNCKRLKHLSSNLYKLKCL 773

Query: 241  HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS--SFANLEG------------ 286
              L+L  CS+LE FPEI E MES++ + L+ T+ITE+P+    +N++             
Sbjct: 774  QELILSGCSQLEVFPEIKEDMESLEILLLDDTSITEMPNMKHLSNIKTFSLCGTNCEVSV 833

Query: 287  -------------LKDLYIGGSSLRQL-NLSRNDS-------------ESLPASITQLSQ 319
                         L DLY+   SL ++ N+S N               E+LP S  QL  
Sbjct: 834  RVLFLSPPLGCSRLTDLYLSRCSLYRIPNISGNGLSSLQSLCLSGNSIENLPESFNQLHN 893

Query: 320  LRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSA 379
            L+   LK C  L SLP LPQ+L+ LDA  C+ L+ +   L+ L     +V E+   +   
Sbjct: 894  LKWFDLKYCKNLKSLPVLPQNLQYLDAHECESLETLANPLTPL-----TVRERIHSM--- 945

Query: 380  FTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGP--SI 437
                     F+FSNC KLN+ A   ++  ++   Q MA A+ + +       I  P   +
Sbjct: 946  ---------FMFSNCYKLNQDAQESLVGHARIKSQLMANASVKRYYRG---FIPEPLVGV 993

Query: 438  ILPGSEIPEWFSNQSSGSSITVK-PPQNCCRNLIGFALCAVLDYNE------RIPSGFSS 490
              P +EIP WF  Q  G S+ +  PP  C  N +G A   V+ + E      R    FS 
Sbjct: 994  CFPATEIPSWFFYQRLGRSLDISLPPHWCDTNFVGLAFSVVVSFKEYEDCAKRFSVKFSG 1053

Query: 491  VFCEY-----RFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNV 537
             F +      RF    L+G     E C  L      + SDHV +G+N C+ V
Sbjct: 1054 KFEDQDGSFTRFNF-TLAGWN---EPCGTLRHEPRKLTSDHVFMGYNSCFQV 1101

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495285|ref|XP_002276740.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 224/656 (34%), Positives = 327/656 (49%), Gaps = 112/656 (17%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            + L+LS++T IH++ +AFA M NLR LK +    +      +KV L +  E+  +ELRYL
Sbjct: 743  ILLNLSRLTRIHITTEAFAMMKNLRLLKIHWDLESASTREDNKVKLSKDFEFPSHELRYL 802

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            HWH YP ++LP  F  E+LV+L++ YS + ++WEG     KL  + +  SQ+LI +PD++
Sbjct: 803  HWHGYPLESLPLGFYAEDLVELDMCYSSLKRLWEGDLLLEKLNTIRVSCSQHLIEIPDIT 862

Query: 121  -ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
               PNLE+  L  C +L  V  S+   N L +L  + CK L  FPS +   +   ++FS 
Sbjct: 863  VSAPNLEKLILDGCSSLLEVHPSIGKLNKLILLNLKNCKKLICFPSIIDMKALEILNFSG 922

Query: 180  CFNLTEFPQISGNITDLI---LSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICK 236
            C  L +FP I GN+ +L+   L+ TAI+E+PSSI  LT L  L +  C  LK L TSICK
Sbjct: 923  CSGLKKFPNIQGNMENLLELYLASTAIEELPSSIGHLTGLVLLDLKWCKNLKSLPTSICK 982

Query: 237  LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI---- 292
            LKSL  L L  CS+LE FPE+ E M+++K + L+ T I  LPSS   L+GL  L +    
Sbjct: 983  LKSLENLSLSGCSQLESFPEVTENMDNLKELLLDGTPIEVLPSSIERLKGLVLLNLRKCK 1042

Query: 293  ----------GGSSLR-------------------------------------QLNLSRN 305
                       G  LR                                     +L+LSRN
Sbjct: 1043 NLLSLSNGISNGIGLRLPSSFSSFRSLSNLDISDCKLIEGAIPNGICSLISLKKLDLSRN 1102

Query: 306  DSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEV 365
            +  S+PA I++L+ L+ L L  C  L+ +PELP S+  +DA NC  L      L G   V
Sbjct: 1103 NFLSIPAGISELTNLKDLRLAQCQSLTGIPELPPSVRDIDAHNCTSL------LPGSSSV 1156

Query: 366  DASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHM--------- 416
                           TL    ++F+F NC K  E  +++      +   H+         
Sbjct: 1157 S--------------TLQG--LQFLFYNCSKPVEDQSSDDKRTELQIFPHIYVSSTASDS 1200

Query: 417  AIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNC-CRNLIGFALC 475
            ++ T  +  +    +I   SI+ PG+ IPEW  +Q+ GSSI ++ P N    + +GFALC
Sbjct: 1201 SVTTSPVMMQKLLENI-AFSIVFPGTGIPEWIWHQNVGSSIKIQLPTNWYSDDFLGFALC 1259

Query: 476  AVLDY-NERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPC 534
            +VL++  ERI    +S      F    L    H +        T  ++ S+HV LG+ PC
Sbjct: 1260 SVLEHLPERIICHLNSDV----FNYGDLKDFGHDFH------WTGNIVGSEHVWLGYQPC 1309

Query: 535  WNVGDGDDHRIFLKFFDIHK-HHTAISFEFI-----CDSYKVKSCGVCPVYANPSE 584
              +      R+F +F D ++ +H  ISFE         S  VK CGVC +YA   E
Sbjct: 1310 SQL------RLF-QFNDPNEWNHIEISFEAAHRFNSSASNVVKKCGVCLIYAEDLE 1358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 184/539 (34%), Positives = 272/539 (50%), Gaps = 100/539 (18%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            + L +S+   + L+  AF  + NL+FL   M  + G      KV   +GLE LP +LRYL
Sbjct: 572  ILLGMSEARKLELNRNAFTRISNLKFLILRMSNNCGGFEEECKVQFPEGLESLPQQLRYL 631

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            +WH YP K LP +F P NL++LN PYS++  +WEG K                       
Sbjct: 632  YWHGYPLKFLPANFHPTNLIELNFPYSRLEGLWEGDK----------------------- 668

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
                              VPSS+     L+ +     K++RSFP+ +   S   +D S C
Sbjct: 669  ------------------VPSSIGQLTKLTFMSLRCSKNIRSFPTTIDLQSLETLDLSGC 710

Query: 181  FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240
             NL  FP++S NI  L L+ETAIQEVP SIE L+ L  L +  C  L+ + ++I KLKSL
Sbjct: 711  SNLKIFPEVSRNIRYLYLNETAIQEVPLSIEHLSKLVVLNMKNCNELECIPSTIFKLKSL 770

Query: 241  HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLK------------ 288
             VL+L  C KLE FPEILE    ++ +SL+ TA+  LP +F NL+ L             
Sbjct: 771  GVLILSGCKKLESFPEILETTNHLQHLSLDETAMVNLPDTFCNLKALNMLNFSDCSKLGK 830

Query: 289  ------------DLYIGG-------------SSLRQLNLSRNDSESLPASITQLSQLRSL 323
                        +L  GG             SS+ +LNLS ++ +++PA I QLS+LR +
Sbjct: 831  LPKNMKNLKSLAELRAGGCNLSTLPADLKYLSSIVELNLSGSNFDTMPAGINQLSKLRWI 890

Query: 324  HLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLN 383
            ++  C  L SLPELP  +  L+A +C+ L            V  S L++   L  + +L+
Sbjct: 891  NVTGCKRLQSLPELPPRIRYLNARDCRSL------------VSISGLKQLFELGCSNSLD 938

Query: 384  SACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSE 443
                 FVF+NC KL++    +ILA +Q  IQH A+   + +D   Y          PG+E
Sbjct: 939  DET--FVFTNCFKLDQDNWADILASAQLKIQHFAMGR-KHYDRELYDET-FICFTYPGTE 994

Query: 444  IPEWFSNQSSGSSITVK--PPQNCCRNLIGFALCAVLDYNERI----PSGFSSVFCEYR 496
            IPEWF+++S GSS+T++  PP       +GF++C V+ +++R     P G  +  C ++
Sbjct: 995  IPEWFADKSIGSSVTIQHLPPDWLNHRFLGFSVCLVVAFDDRFLCEYPRGVVACKCNFQ 1053

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 210/658 (31%), Positives = 323/658 (49%), Gaps = 95/658 (14%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            + LDLS    +H S  AF  M  LR L+FY  + NG             L++L N LR L
Sbjct: 541  LVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNG------------NLKFLSNNLRSL 588

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            +WHEYP K+LP +F P+ LV+LN+  S++ Q+W+G K   KLK++ + +SQYL R PD S
Sbjct: 589  YWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFS 648

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
              PNLER  L+ C ++  V  S+     L  L  EGCK+L+SF S++H  S   +  S C
Sbjct: 649  GAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTLSGC 708

Query: 181  FNLTEFPQISGNIT---DLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKL 237
              L +FP++  N+     L+L ETA++E+PSSI  L  L  L +  C +L  L  S+CKL
Sbjct: 709  SKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKL 768

Query: 238  KSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSL 297
             SL +L L  CS+L++ P+ L  +  +  ++ + + I E+P S   L  L+ L + G   
Sbjct: 769  TSLQILTLAGCSELKKLPDELGSLRCLVNLNADGSGIQEVPPSITLLTNLQVLSLAGCKK 828

Query: 298  RQLNLSRNDSESL---PASITQLSQLRSLHLKDCSM---------------------LSS 333
            R +  S   S ++     S+  LS +++L L DC++                      ++
Sbjct: 829  RNVVFSLWSSPTVCLQLRSLLNLSSVKTLSLSDCNLSEGALPSDLSSLSSLESLDLSKNN 888

Query: 334  LPELPQSLE------LLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSAC- 386
               +P SL        L   +CK LQ +PE+ S +++V A            F+L SAC 
Sbjct: 889  FITIPASLNRLSQLLYLSLSHCKSLQSVPELPSTIQKVYADHCPSL----ETFSL-SACA 943

Query: 387  ------VKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHI--KGPSII 438
                  + F FS+C +L E  +++ +    + IQ +A +  +  D NK S +      +I
Sbjct: 944  SRKLNQLNFTFSDCFRLVENEHSDTVGAILQGIQ-LASSIPKFVDANKGSPVPYNDFHVI 1002

Query: 439  LPGSEIPEWFSNQSSGSSITVK-PPQNCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRF 497
            +PGS IPEWF +Q+ GSS+TV+ PP      L+G A+CAV  + + I  G+   +  YR 
Sbjct: 1003 VPGSSIPEWFIHQNMGSSVTVELPPHWYNAKLMGLAVCAVF-HADPIDWGYLQ-YSLYRG 1060

Query: 498  EVNALSGIEHVYENCLILASTHELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHT 557
                    EH Y++ ++   T   +  DHV  G+     VG  DD   F           
Sbjct: 1061 --------EHKYDSYML--QTWSPMKGDHVWFGYQSL--VGQEDDRMWF--------GER 1100

Query: 558  AISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKFATRI----GKLDDKAASPSGT 611
            + + + +   + +KSC VC         +P     K   R+    G  D + + P GT
Sbjct: 1101 SGTLKILFSGHCIKSCIVC--------VQPEVVVKKCGVRLAYEQGDKDGECSFPYGT 1150

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227438275|gb|ACP30627.1| disease resistance protein [Brassica rapa subsp. pekinensis]

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 216/646 (33%), Positives = 319/646 (49%), Gaps = 93/646 (14%)

Query: 1    MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            +FLD+S + S+ LS   FA M NL+FLKFY    +       ++   +GL+  P+EL YL
Sbjct: 537  IFLDMSNVDSMKLSADIFARMWNLKFLKFYNSHCSKWCENDCRLRFPKGLDCFPDELVYL 596

Query: 61   HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            HW  YP + LP +F P+ LV LNL YS ++Q+ E +K   +L++VD+  S+ L+ +  L 
Sbjct: 597  HWQGYPLEYLPSNFNPKKLVYLNLRYSNIMQLCEDEKNTGELRWVDLSYSKELMNLTGLL 656

Query: 121  ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
            E   LER NL+NC +LT   S+++  + L  L    C +L+S P  +   S   +  S C
Sbjct: 657  EARKLERLNLENCTSLTKC-SAIRQMDSLVSLNLRDCINLKSLPKRISLKSLKFVILSGC 715

Query: 181  FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240
              L +FP IS NI  L L  TA++ VP SIE L  L  L + +C RL  L T++CKLKSL
Sbjct: 716  SKLKKFPTISENIESLYLDGTAVKRVPESIENLQKLTVLNLKKCSRLMHLPTTLCKLKSL 775

Query: 241  HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-------------------- 280
              L+L  CSKLE FP+I E MES++ + ++ TAI + P                      
Sbjct: 776  KELLLSGCSKLESFPDINEDMESLEILLMDDTAIKQTPRKMDMSNLKLFSFGGSKVHDLT 835

Query: 281  ------FANLEGLKDLYIGG-------------SSLRQLNLSRNDSESLPASITQLSQLR 321
                  F+    L D+Y+               S L+ L LSRN+ ++LP SI +L  L+
Sbjct: 836  CLELLPFSGCSRLSDMYLTDCNLYKLPDSFSCLSLLQTLCLSRNNIKNLPGSIKKLHHLK 895

Query: 322  SLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT 381
            SL+LK C  L SLP LP +L+ LDA  C  L+              +V +  T L  A  
Sbjct: 896  SLYLKHCQQLVSLPVLPSNLQYLDAHGCISLE--------------TVAKPMTLLVVAER 941

Query: 382  LNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGP--SIIL 439
              S    FVF++C KLN  A   I+A +Q   Q +   + +    N    +  P  S   
Sbjct: 942  NQST---FVFTDCFKLNRDAQESIVAHTQLKSQILGNGSLQ---RNHKGLVSEPLASASF 995

Query: 440  PGSEIPEWFSNQSSGSSI-TVKPPQNCCRNLIGFALCAVLDYNERI-PSGFSSVFCEYRF 497
            PG+++P WF +Q  GSS+ T  PP  C    IG +LC V+ + + +  +   SV C+ +F
Sbjct: 996  PGNDLPLWFRHQRMGSSMETHLPPHWCDDKFIGLSLCVVVSFKDYVDKTNRFSVICKCKF 1055

Query: 498  E------VNALSGIEHVYENCLILASTHE---LIDSDHVVLGFNPCWNVGDGDDHRIFLK 548
                   ++    +    E C   +S  E    + SDHV + +N C++           K
Sbjct: 1056 RNEDGDCISFTCNLGGWKEQCGSSSSREEEPRKLTSDHVFISYNNCFHAK---------K 1106

Query: 549  FFDIHK-HHTAISFEFIC---------DSYKVKSCGVCPVYANPSE 584
              D+++  +T  SF+F           D  +V  CG+  +YA P E
Sbjct: 1107 SHDLNRCCNTTASFKFFVTDGVSKRKLDCCEVVKCGMSLLYA-PDE 1151

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	635
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.874	0.470	0.323	3.4e-64
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.822	0.413	0.324	3e-62
TAIR|locus:2827639	1195	AT2G17060 [Arabidopsis thalian	0.751	0.399	0.337	1.5e-55
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.507	0.264	0.394	1.6e-55
TAIR|locus:2118116	1895	WRKY19 [Arabidopsis thaliana (	0.496	0.166	0.386	6.1e-49
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.510	0.250	0.367	8e-49
TAIR|locus:2115870	1234	AT4G08450 [Arabidopsis thalian	0.853	0.439	0.290	5.2e-48
TAIR|locus:2122985	1167	AT4G19530 [Arabidopsis thalian	0.540	0.293	0.364	1.3e-45
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.486	0.258	0.386	4.8e-45
TAIR|locus:2158475	1217	RPS4 "RESISTANT TO P. SYRINGAE	0.541	0.282	0.343	3.6e-44

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 3.4e-64, P = 3.4e-64
 Identities = 194/600 (32%), Positives = 309/600 (51%)

Query:     1 MFLDLSKITS-IHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
             +FLD+S++   + L    F  M NLR+LKFY    +      SK++  +GLE+  +E+RY
Sbjct:   552 IFLDMSELKKKLPLDRSTFIKMRNLRYLKFYSSRCDRECEADSKLNFPEGLEFPLDEIRY 611

Query:    60 LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDL 119
             L+W ++P   LP DF P+NL   NLPYS++ ++WEG K   KLK+VD+ +S+ L  +  L
Sbjct:   612 LYWLKFPLMKLPKDFNPKNLTDFNLPYSEIEELWEGAKDTQKLKWVDLSHSRKLCNLSGL 671

Query:   120 SETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
                 +L+R NL+ C +L  +P  ++    L  L   GC SLR  P  ++ +S   +  ++
Sbjct:   672 LNAESLQRLNLEGCTSLEELPREMKRMKSLIFLNMRGCTSLRVLP-RMNLISLKTLILTN 730

Query:   180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
             C ++ +F  IS N+  L L  TAI ++P+ +  L  L  L +  C  L  +   + KLK+
Sbjct:   731 CSSIQKFQVISDNLETLHLDGTAIGKLPTDMVKLQKLIVLNLKDCKMLGAVPEFLGKLKA 790

Query:   240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS----SFANLEGLKDLY--IG 293
             L  LVL  CSKL+ F   +E M+ ++ + L+ TA+ E+P     + + +E L +L   I 
Sbjct:   791 LQELVLSGCSKLKTFSVPIETMKCLQILLLDGTALKEMPKLLRFNSSRVEDLPELRRGIN 850

Query:   294 G-SSLRQLNLSRNDSES-LPASITQLSQLRSLHLKDCSMXXXXXXXXXXXXXXDAENCKQ 351
             G SSLR+L LSRN+  S L   I QL  L+ L LK C                DA  C++
Sbjct:   851 GLSSLRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGCEK 910

Query:   352 LQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQR 411
             L+ +   ++ L+     ++E+   + S         KF+F+NC  L + A N I + +QR
Sbjct:   911 LKTVASPMALLK-----LMEQ---VQS---------KFIFTNCNNLEQVAKNSITSYAQR 953

Query:   412 WIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVK-PPQNCCRNLI 470
               Q   +   R + E   S     +   PGS++P WF+ Q+ GS++ +K PP  C   L 
Sbjct:   954 KSQ---LDARRCYKEGGVSEALFIACF-PGSDVPSWFNYQTFGSALRLKLPPHWCDNRLS 1009

Query:   471 GFALCAVL---DYNERIPSGFS-SVFCEYRFEVNALSGIEHVYENCLILASTHEL--IDS 524
               ALCAV+   D  + I + FS    CE++ E+        +  +C +  S  E   IDS
Sbjct:  1010 TIALCAVVTFPDTQDEI-NRFSIECTCEFKNELGTC-----IRFSCTLGGSWIESRKIDS 1063

Query:   525 DHVVLGFNPCWNVGDGDDHRIFLKFFD-IHKHHTAISFEFICDSYKVKSCGVCPVYANPS 583
             DHV +G+    ++    +  + LK  D       +I FE I  + ++ +CG+  VY  P+
Sbjct:  1064 DHVFIGYTSSSHITKHLEGSLKLKEHDKCVPTEASIEFEVIDGAGEIVNCGLSLVYEEPN 1123

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 3.0e-62, P = 3.0e-62
 Identities = 183/564 (32%), Positives = 277/564 (49%)

Query:     1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPE-HNGVPIMISKVHLDQGLEYLPNELRY 59
             ++LD+ ++  + L    F  M +LR+LKFY    H       SK++  +GLE+LP ELRY
Sbjct:   562 VYLDMFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAEDSKLNFPEGLEFLPQELRY 621

Query:    60 LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDL 119
             L+W +YP K LP +F+P+NL+ L LPYS++ QIWE +K    L+++D+++S  L  +  L
Sbjct:   622 LNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTSNLQWLDLNHSSKLHSLSGL 681

Query:   120 SETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
             S    L+  NL+ C  L  +P  +QN   L  L   GC SL S P ++  +    +  S+
Sbjct:   682 SRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCTSLESLP-DITLVGLRTLILSN 740

Query:   180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
             C    EF  I+ N+ +L L  TAI+E+PS+I  L  L  L +  C  L  L  SI  LK+
Sbjct:   741 CSRFKEFKLIAKNLEELYLDGTAIKELPSTIGDLQKLISLKLKDCKNLLSLPDSIGNLKA 800

Query:   240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANL---EGL--------- 287
             +  ++L  CS LE FPE+ + ++ +K + L+ TAI ++P    +L   +GL         
Sbjct:   801 IQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAIKKIPDILHHLSPDQGLTSSQSNCHL 860

Query:   288 ----KDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMXXXXXXXXXXXXX 343
                 + +Y G SS+R+L+LS N+   LP SI  L  L  L LK C               
Sbjct:   861 CEWPRGIY-GLSSVRRLSLSSNEFRILPRSIGYLYHLNWLDLKHCKNLVSVPMLPPNLQW 919

Query:   344 XDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANN 403
              DA  C  L+ I  ILS        +L +   L+S F         +F+NC KL +   N
Sbjct:   920 LDAHGCISLETI-SILSD------PLLAETEHLHSTF---------IFTNCTKLYKVEEN 963

Query:   404 EILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQ 463
              I +  ++ IQ M+ A  R         + G  I  PG ++P WF++++ G  +    P+
Sbjct:   964 SIESYPRKKIQLMSNALARYEKGLALDVLIG--ICFPGWQVPGWFNHRTVGLELKQNLPR 1021

Query:   464 NC-CRNLIGFALCAVLDYNERIPSGFSS-VFC--EYRFEVNALSGIEHVYENCLILASTH 519
             +     L G ALCAV+ + + I       V C  E++ E   L     +        S  
Sbjct:  1022 HWNAGGLAGIALCAVVSFKDYISKNNRLLVTCSGEFKKEDKTLFQFSCILGGWTEHGSYE 1081

Query:   520 EL-IDSDHVVLGFNPCWNVGDGDD 542
                I SDHV +G+    N    DD
Sbjct:  1082 AREIKSDHVFIGYTSWLNFMKSDD 1105

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.5e-55, P = 1.5e-55
 Identities = 174/516 (33%), Positives = 255/516 (49%)

Query:     1 MFLDLSKI-TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
             + LD+S++  ++ L  + F+ M NLR+LK Y  + +    +  K+    GL+     +RY
Sbjct:   581 ILLDVSEMDNNMTLDSKFFSEMCNLRYLKVYNSQCSRDCDVGCKLTFPDGLKCSMENVRY 640

Query:    60 LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDL 119
             L+W ++P K L   F P+NL++LNLPYSK+ ++W+  K   KLK+VD+ +S  L  +  L
Sbjct:   641 LYWLQFPLKKLSKAFNPKNLIELNLPYSKITRLWKESKEISKLKWVDLSHSSELCDISGL 700

Query:   120 SETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
                 N+ R NL+ CI L  +P  +Q    L  L   GC  L S P      S   +  S 
Sbjct:   701 IGAHNIRRLNLEGCIELKTLPQEMQEMESLIYLNLGGCTRLVSLPE-FKLKSLKTLILSH 759

Query:   180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
             C N  +FP IS  +  L L  TAI+ +P+SIE L  L  L +  C  L  L   +  L+S
Sbjct:   760 CKNFEQFPVISECLEALYLQGTAIKCIPTSIENLQKLILLDLKDCEVLVSLPDCLGNLRS 819

Query:   240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP----------SSFANL---EG 286
             L  L+L  CSKL+ FPE+ E M+S+K + L+ TAI ++P           S AN      
Sbjct:   820 LQELILSGCSKLKFFPELKETMKSIKILLLDGTAIKQMPILLQCIQSQGHSVANKTLPNS 879

Query:   287 LKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMXXXXXXXXXXXXXXDA 346
             L D Y+  SSL  L LS ND ESL A+I+QL  L+ L LK+C                DA
Sbjct:   880 LSDYYLP-SSLLSLCLSGNDIESLHANISQLYHLKWLDLKNCKKLKSVSVLPPNLKCLDA 938

Query:   347 ENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEIL 406
               C            LEEV + +   A  +    T    C  ++F+NC KL++ A + I+
Sbjct:   939 HGC----------DSLEEVGSPL---AVLM---VTGKIHCT-YIFTNCNKLDQVAESNII 981

Query:   407 ADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCC 466
             + + R  Q M+ A  R         +   S   PG E+P  F +Q+ G+ +  K P++ C
Sbjct:   982 SFTWRKSQMMSDALNRYNGGFVLESLV--STCFPGCEVPASFDHQAYGALLQTKLPRHWC 1039

Query:   467 RN-LIGFALCAVL---DYNERIPSGFSSVFCEYRFE 498
              + L G ALCAV+   DY  +         CE+  E
Sbjct:  1040 DSRLTGIALCAVILFPDYQHQSNRFLVKCTCEFGTE 1075

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 583 (210.3 bits), Expect = 1.6e-55, P = 1.6e-55
 Identities = 131/332 (39%), Positives = 197/332 (59%)

Query:     1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEH--NGVPIMISKVHLDQGLEYLPNELR 58
             +FLD SK+ ++ LS +AF  M NL++LK Y   H   G      K+HL +GL +LPNEL 
Sbjct:   544 IFLDTSKLRAMRLSAKAFQGMYNLKYLKIY-DSHCSRGCEAEF-KLHLRRGLSFLPNELT 601

Query:    59 YLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD 118
             YLHWH YP +++P DF+P+NLV L LP+S++ +IW+ +K    LK+VD+ +S  L +   
Sbjct:   602 YLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLG 661

Query:   119 LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFS 178
             L+   NLER NL+ C +L  +PS++     L  L    C SLRS P  +   S   +  S
Sbjct:   662 LANAHNLERLNLEGCTSLKKLPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILS 721

Query:   179 SCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK 238
              C +L +FP IS N+  L+L  T I+ +P SI+    L  L +  C +LK LS+ + KLK
Sbjct:   722 GCSSLKKFPLISENVEVLLLDGTVIKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLK 781

Query:   239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLR 298
              L  L+L  CS+LE FPEI E MES++ + ++ T+ITE+P    +L  +K   + G+S  
Sbjct:   782 CLQELILSGCSQLEVFPEIKEDMESLEILLMDDTSITEMPKMM-HLSNIKTFSLCGTS-S 839

Query:   299 QLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330
              +++S      +P ++   S+L  L+L  CS+
Sbjct:   840 HVSVSMF---FMPPTLG-CSRLTDLYLSRCSL 867

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2118116 WRKY19 [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 6.1e-49, P = 6.1e-49
 Identities = 128/331 (38%), Positives = 175/331 (52%)

Query:     1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
             +FLD+  +     +P  F  M NLR LK Y  +          V   QGLEYLP++LR L
Sbjct:  1156 IFLDMLNL-KFDANPNVFEKMCNLRLLKLYCSKAEEK----HGVSFPQGLEYLPSKLRLL 1210

Query:    61 HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF--------KLKYVDIHNSQY 112
             HW  YP  +LP  F PENLV+LNLP S   ++W+GKK  F        KLK + +  S  
Sbjct:  1211 HWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQ 1270

Query:   113 LIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
             L ++P LS   NLE  +L+ C +L  +  S+     L  L  +GC  L + PS +   S 
Sbjct:  1271 LTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESL 1330

Query:   173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST 232
               ++ S C  L  FP+IS N+ +L +  T IQE+PSSI+ L  LEKL +     LK L T
Sbjct:  1331 EVLNLSGCSKLGNFPEISPNVKELYMGGTMIQEIPSSIKNLVLLEKLDLENSRHLKNLPT 1390

Query:   233 SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292
             SI KLK L  L L  C  LERFP+   +M+ ++ + L RT I ELPSS + L  L +L  
Sbjct:  1391 SIYKLKHLETLNLSGCISLERFPDSSRRMKCLRFLDLSRTDIKELPSSISYLTALDELLF 1450

Query:   293 GGSSLRQ---LNLSRNDSESLPASITQLSQL 320
               S        N + N +E +P+  ++L  L
Sbjct:  1451 VDSRRNSPVVTNPNANSTELMPSESSKLEIL 1481

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009556 "microsporogenesis" evidence=RCA

GO:0052543 "callose deposition in cell wall" evidence=RCA

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 8.0e-49, Sum P(2) = 8.0e-49
 Identities = 125/340 (36%), Positives = 184/340 (54%)

Query:     3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW 62
             L+LS+I+ +  S +AF  + NL+ L FY    +G     ++VHL  GL YLP +LRYL W
Sbjct:   532 LNLSEISEVFASDRAFEGLSNLKLLNFYDLSFDGE----TRVHLPNGLSYLPRKLRYLRW 587

Query:    63 HEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSET 122
               YP K +P  F PE LV+L +  S + ++W+G +    LK +D+   +YL+ +PDLS+ 
Sbjct:   588 DGYPLKTMPSRFFPEFLVELCMSNSNLEKLWDGIQPLRNLKKMDLSRCKYLVEVPDLSKA 647

Query:   123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFN 182
              NLE  NL  C +L  V  S++N   LS      C  L+  P  +   S   +  S C +
Sbjct:   648 TNLEELNLSYCQSLVEVTPSIKNLKGLSCFYLTNCIQLKDIPIGIILKSLETVGMSGCSS 707

Query:   183 LTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHV 242
             L  FP+IS N   L LS T I+E+PSSI  L+ L KL ++ C RL+ L + +  L SL  
Sbjct:   708 LKHFPEISWNTRRLYLSSTKIEELPSSISRLSCLVKLDMSDCQRLRTLPSYLGHLVSLKS 767

Query:   243 LVLDDCSKLERFPEILEKMESVK------CISLER-----TAITELPSSFANLEGLKDLY 291
             L LD C +LE  P+ L+ + S++      C+++       T+I  L  S  ++E +    
Sbjct:   768 LNLDGCRRLENLPDTLQNLTSLETLEVSGCLNVNEFPRVSTSIEVLRISETSIEEIPARI 827

Query:   292 IGGSSLRQLNLSRNDS-ESLPASITQLSQLRSLHLKDCSM 330
                S LR L++S N    SLP SI++L  L  L L  CS+
Sbjct:   828 CNLSQLRSLDISENKRLASLPVSISELRSLEKLKLSGCSV 867

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2115870 AT4G08450 [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 5.2e-48, P = 5.2e-48
 Identities = 174/598 (29%), Positives = 280/598 (46%)

Query:     3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW 62
             LD+ +I  +HL   AF  M NLRFLK Y   +  +     K+ L +   YLPN LR L W
Sbjct:   537 LDMDEIEELHLQVDAFKKMLNLRFLKLYT--NTNISEKEDKLLLPKEFNYLPNTLRLLSW 594

Query:    63 HEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSET 122
               +P + +P DF P+ LVKL +P SK+ ++W+G      LK +++  S+ L   P+LS  
Sbjct:   595 QRFPMRCMPSDFFPKYLVKLLMPGSKLEKLWDGVMPLQCLKNMNLFGSENLKEFPNLSLA 654

Query:   123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFN 182
              NLE  +L  C++L  VPS++ N N L+ L   GC +L  FP++++  S   +  + C  
Sbjct:   655 TNLETLSLGFCLSLVEVPSTIGNLNKLTYLNMSGCHNLEKFPADVNLKSLSDLVLNGCSR 714

Query:   183 LTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHV 242
             L  FP IS NI++L L+  A++E PS++  L NL  L I     +K L   +  L SL  
Sbjct:   715 LKIFPAISSNISELCLNSLAVEEFPSNLH-LENLVYLLIWGMTSVK-LWDGVKVLTSLKT 772

Query:   243 LVLDDCSKLERFPEILEKMESVKCISLERT-AITELPSSFANLEGLKDLYIGGSSLRQLN 301
             + L D   L+  P+ L    ++  ++LE+  +I ELPSS  NL  L +L + G +    N
Sbjct:   773 MHLRDSKNLKEIPD-LSMASNLLILNLEQCISIVELPSSIRNLHNLIELDMSGCT----N 827

Query:   302 LSRNDSESLPASITQLSQLRSLHLKDCSMXXXXXXXXXXXXXXDAENCKQLQFIPEILSG 361
             L     E+ P  I  L  L+ ++L  CS               D      ++ +P  +  
Sbjct:   828 L-----ETFPTGIN-LQSLKRINLARCSRLKIFPDISTNISELDLSQTA-IEEVPLWIEN 880

Query:   362 LEEVDASVLEKATFLNSAFTLNSACVKFV----FSNCLKLNEKANNEIL-----ADSQ-- 410
               ++   ++ K   L   F LN + +K +    FS+C  L+ KA+  +L     A S   
Sbjct:   881 FSKLKYLIMGKCNMLEYVF-LNISKLKHLKSVDFSDCGILS-KADMYMLQVPNEASSSLP 938

Query:   411 -RWIQHMAIATFRLFDENKYSHIKGP----SIILPGSEIPEWFSNQSSGSSITVKPPQNC 465
                +Q   +     +  N+ + I+       +ILPG E+P +F++Q+ GSSI + P  + 
Sbjct:   939 INCVQKAELIFINCYKLNQKALIRQQFFLKKMILPGEEVPFYFTHQTIGSSIGI-PLLHI 997

Query:   466 C--RNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELID 523
                +    F  C V+D     P+        Y   +      + +Y N    A       
Sbjct:   998 LLSQQYFRFKACVVVDPKFVFPAR------RYHVNIQVSCRFKGIYGNYFDYADQPHCFS 1051

Query:   524 ---SDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTAISFEFICDSY---KVKSCGV 575
                +D+ V  F+ C+ +   D+  +    +D    H  I F  + D+Y   K+K CG+
Sbjct:  1052 PSQTDNYVYVFDCCFPLNK-DNAPLAELDYD----HVDIEFH-LDDNYNHHKIKGCGI 1103

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122985 AT4G19530 [Arabidopsis thaliana (taxid:3702)]

 Score = 490 (177.5 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 132/362 (36%), Positives = 185/362 (51%)

Query:     2 FLDLSKI-TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
             FLD+  + T + L      NM NLR+LKFY             +H+   LE    E+R L
Sbjct:   566 FLDMYVMKTDVTLGTDYLKNMRNLRYLKFYSSHCPQECTPKENIHIPGELELPLEEVRCL 625

Query:    61 HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
             HW  +P   LP DF P+NLV L LPYSK+ QIW  +K A KL++VD+++S  L  +  LS
Sbjct:   626 HWLNFPKDELPQDFIPKNLVDLKLPYSKIRQIWREEKDAPKLRWVDLNHSSKLENLSGLS 685

Query:   121 ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS-NLHFMSPIKIDFSS 179
             +  NLER NL+ C  L  +    +N   L  L  +GC  L S P  NL  +  + +  S+
Sbjct:   686 QALNLERLNLEGCTALKTLLLGPENMASLVFLNLKGCTGLESLPKINLRSLKTLIL--SN 743

Query:   180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
             C NL EF  IS  +  L L  TAI+ +P  +  LT+L KLY+  C  L +L     KLK 
Sbjct:   744 CSNLEEFWVISETLYTLYLDGTAIKTLPQDMVKLTSLVKLYMKDCEMLVKLPEEFDKLKV 803

Query:   240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQ 299
             L  LV   C +L   P++++ M+ ++ + L+ TAIT++P            +I  SSL +
Sbjct:   804 LQELVCSGCKRLSSLPDVMKNMQCLQILLLDGTAITKIP------------HI--SSLER 849

Query:   300 LNLSRNDSES-LPASITQLSQLRSLHLKDCSMXXXXXXXXXXXXXXDAENCKQLQFIPEI 358
             L LSRN+  S L   I  LSQL+ L LK C+               DA  C+ L  +   
Sbjct:   850 LCLSRNEKISCLSNDIRLLSQLKWLDLKYCTKLVSIPELPTNLQCLDANGCESLTTVANP 909

Query:   359 LS 360
             L+
Sbjct:   910 LA 911

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 4.8e-45, P = 4.8e-45
 Identities = 129/334 (38%), Positives = 184/334 (55%)

Query:     1 MFLDLSKITSIH-LSPQAFANMPNLRFLKFYM---PEHNGVPIMISKVHLDQGLEYLP-N 55
             +FLDLS IT        AFA M +LR+LK Y    P+     I   K++  +GL  LP N
Sbjct:   560 IFLDLSDITRKWCFYRHAFAMMRDLRYLKIYSTHCPQECESDI---KLNFPEGL-LLPLN 615

Query:    56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR 115
             E+RYLHW ++P K +P DF P NLV L LPYS++ ++WE  K A KLK+V++++S+ L  
Sbjct:   616 EVRYLHWLKFPLKEVPQDFNPGNLVDLKLPYSEIERVWEDNKDAPKLKWVNLNHSKKLNT 675

Query:   116 MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175
             +  L +  NL+  NL+ C  L  +   ++N   L  L   GC SL+S P  +  +S   +
Sbjct:   676 LAGLGKAQNLQELNLEGCTALKEMHVDMENMKFLVFLNLRGCTSLKSLPE-IQLISLKTL 734

Query:   176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC 235
               S C     F  IS  +  L L  TAI+E+P  I  L  L  L +  C +LKRL  S+ 
Sbjct:   735 ILSGCSKFKTFQVISDKLEALYLDGTAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLG 794

Query:   236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS 295
             +LK+L  L+L  CSKL  FPE    M  ++ + L+ TAI ++P         K L     
Sbjct:   795 QLKALEELILSGCSKLNEFPETWGNMSRLEILLLDETAIKDMP---------KIL----- 840

Query:   296 SLRQLNLSRNDSES-LPASITQLSQLRSLHLKDC 328
             S+R+L L++N+  S LP  + + SQL+ LHLK C
Sbjct:   841 SVRRLCLNKNEKISRLPDLLNKFSQLQWLHLKYC 874

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 477 (173.0 bits), Expect = 3.6e-44, P = 3.6e-44
 Identities = 124/361 (34%), Positives = 185/361 (51%)

Query:     1 MFLDLSKITS-IHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
             +FLDLS++     L    F NM NLR+LKFY           +K+++   L+    E+R 
Sbjct:   560 IFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRC 619

Query:    60 LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDL 119
             LHW ++P + LP DF P NLV L LPYS++ Q+WEG K    L++VD+++S  L  +  L
Sbjct:   620 LHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGL 679

Query:   120 SETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
             S+   L+R NL+ C  L   P  ++    L+ L  +GC SL S P  ++ +S   +  S 
Sbjct:   680 SKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPE-MNLISLKTLTLSG 738

Query:   180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
             C    EFP IS NI  L L  TAI ++P ++E L  L  L +  C  L+ +   + +LK+
Sbjct:   739 CSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKA 798

Query:   240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQ 299
             L  L+L DC  L+ FPEI   +  +  + L+ TAI  +P     L  ++ L +     R 
Sbjct:   799 LQELILSDCLNLKIFPEI--DISFLNILLLDGTAIEVMPQ----LPSVQYLCLS----RN 848

Query:   300 LNLSRNDSESLPASITQLSQLRSLHLKDCSMXXXXXXXXXXXXXXDAENCKQLQFIPEIL 359
               +S      LP  I+QLSQL+ L LK C+               DA  C  L+ + + L
Sbjct:   849 AKIS-----CLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPL 903

Query:   360 S 360
             +
Sbjct:   904 A 904

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0004872 "receptor activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0012505 "endomembrane system" evidence=IDA

GO:0009870 "defense response signaling pathway, resistance gene-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	635
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-58
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	7e-06
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.001
pfam07725	20	pfam07725, LRR_3, Leucine Rich Repeat	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  212 bits (540), Expect = 2e-58
 Identities = 158/526 (30%), Positives = 245/526 (46%), Gaps = 74/526 (14%)

Query: 3    LDLSKITSIHLSPQAFANMPNLRFLKFY---MPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            LD+ +I  +H+   AF  M NL FLKFY     +   V     + HL +G +YLP +LR 
Sbjct: 539  LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEV-----RWHLPEGFDYLPPKLRL 593

Query: 60   LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDL 119
            L W +YP + +P +F PENLVKL +  SK+ ++W+G      L+ +D+  S+ L  +PDL
Sbjct: 594  LRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL 653

Query: 120  SETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
            S   NLE   L +C +L  +PSS+Q  N L  L    C++L   P+ ++  S  +++ S 
Sbjct: 654  SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG 713

Query: 180  CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK- 238
            C  L  FP IS NI+ L L ETAI+E PS++  L NL++L +   M+ ++L   +  L  
Sbjct: 714  CSRLKSFPDISTNISWLDLDETAIEEFPSNLR-LENLDELILCE-MKSEKLWERVQPLTP 771

Query: 239  -------SLHVLVLDDCSKLERFPEILEKMESVKCISLER-TAITELPSSFANLEGLKDL 290
                   SL  L L D   L   P  ++ +  ++ + +E    +  LP+   NLE L+ L
Sbjct: 772  LMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESL 830

Query: 291  YIGG-SSLR----------QLNLSRNDSESLPASITQLSQLRSLHLKDCSML---SSLPE 336
             + G S LR           LNLSR   E +P  I + S L  L +  C+ L   S    
Sbjct: 831  DLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS 890

Query: 337  LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLK 396
              + LE +D  +C  L       S  E   A+     + L S   +N       F NC  
Sbjct: 891  KLKHLETVDFSDCGALTEASWNGSPSEVAMATD-NIHSKLPSTVCIN-------FINCFN 942

Query: 397  LNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPEWFSNQSSGSS 456
            L+++A                     L  +          +IL G E+P +F+++++G+S
Sbjct: 943  LDQEA---------------------LLQQQSIFK----QLILSGEEVPSYFTHRTTGAS 977

Query: 457  ITVKP-PQ-NCCRNLIGFALCAVLDYNERIPSGFSSVFCEYRFEVN 500
            +T  P    + C+    F  CAV+D        F  +   +  +V 
Sbjct: 978  LTNIPLLHISPCQPFFRFRACAVVDSES-----FFIISVSFDIQVC 1018

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 51/175 (29%), Positives = 81/175 (46%), Gaps = 17/175 (9%)

Query: 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL 251
           N+ +L LS+  I+ +PS +  L NL+ L ++    L  L   +  L +L+ L L   +K+
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLSG-NKI 198

Query: 252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG-------------SSLR 298
              P  +E + +++ + L   +I EL SS +NL+ L  L +               S+L 
Sbjct: 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258

Query: 299 QLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQ 353
            L+LS N   S+  S+  L+ LR L L   S LS+   L   L LL       L 
Sbjct: 259 TLDLSNNQISSIS-SLGSLTNLRELDLSGNS-LSNALPLIALLLLLLELLLNLLL 311

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 14/178 (7%)

Query: 190 SGNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDC 248
           SGN+  LIL   +++ E+P S+    +L ++ +        L +   KL  ++ L + + 
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 249 SKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRND- 306
           +   R       M S++ +SL R      LP SF           G   L  L+LSRN  
Sbjct: 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-----------GSKRLENLDLSRNQF 487

Query: 307 SESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEE 364
           S ++P  +  LS+L  L L +  +   +P+   S + L + +    Q   +I +   E
Sbjct: 488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSE 545

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 0.001
 Identities = 61/230 (26%), Positives = 95/230 (41%), Gaps = 33/230 (14%)

Query: 154 FEGCKSLRSFP-SNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ-EVPSSIE 211
           F    SLR    SN +F   I                   +  L LS   +  E+P+ I 
Sbjct: 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPN------------LETLDLSNNMLSGEIPNDIG 161

Query: 212 CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISL-- 269
             ++L+ L +   + + ++  S+  L SL  L L     + + P  L +M+S+K I L  
Sbjct: 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221

Query: 270 ------------ERTAITELPSSFANLEGLKDLYIGG-SSLRQLNLSRND-SESLPASIT 315
                         T++  L   + NL G     +G   +L+ L L +N  S  +P SI 
Sbjct: 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF 281

Query: 316 QLSQLRSLHLKDCSMLSSLPELP---QSLELLDAENCKQLQFIPEILSGL 362
            L +L SL L D S+   +PEL    Q+LE+L   +      IP  L+ L
Sbjct: 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSL 331

Length = 968

>gnl|CDD|191828 pfam07725, LRR_3, Leucine Rich Repeat

 Score = 35.8 bits (84), Expect = 0.001
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 78 NLVKLNLPYSKVVQIWEGKK 97
          NLV+LNL YSK+ ++WEG K
Sbjct: 1  NLVELNLRYSKLEKLWEGTK 20

This Pfam entry includes some LRRs that fail to be detected by the pfam00560 model. Length = 20

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 49/204 (24%), Positives = 90/204 (44%), Gaps = 15/204 (7%)

Query: 139 VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLT-EFPQISGNITDL- 196
           +P+S+ N   L  L     + +   P  L  M  +K  +    NL+ E P   G +T L 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 197 ---ILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253
              ++       +PSS+  L NL+ L++ +      +  SI  L+ L  L L D S    
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE 299

Query: 254 FPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA 312
            PE++ ++++++ + L     T ++P +  +L  L+ L        QL  S   S  +P 
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL--------QL-WSNKFSGEIPK 350

Query: 313 SITQLSQLRSLHLKDCSMLSSLPE 336
           ++ + + L  L L   ++   +PE
Sbjct: 351 NLGKHNNLTVLDLSTNNLTGEIPE 374

Length = 968

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	635
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.94
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.94
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.91
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.9
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.86
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.7
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.53
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.06
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.04
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.0
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.94
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.92
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.91
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.91
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.85
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.84
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.78
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.74
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.64
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.63
PRK15386	426	type III secretion protein GogB; Provisional	98.61
PLN03150	623	hypothetical protein; Provisional	98.6
PRK15386	426	type III secretion protein GogB; Provisional	98.56
PLN03150	623	hypothetical protein; Provisional	98.55
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.46
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.45
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.43
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.18
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.0
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.97
KOG4341	483	consensus F-box protein containing LRR [General fu	97.84
KOG4341	483	consensus F-box protein containing LRR [General fu	97.72
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.65
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.65
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.47
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.35
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.3
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.75
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.66
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.44
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.87
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.8
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.65
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.11
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.58
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.24
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.2
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	90.72
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.86
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.24
smart00370	26	LRR Leucine-rich repeats, outliers.	87.24
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.91
smart00370	26	LRR Leucine-rich repeats, outliers.	86.91
KOG4308	478	consensus LRR-containing protein [Function unknown	84.28
KOG4308	478	consensus LRR-containing protein [Function unknown	80.29

>PLN03210 Resistant to P

Probab=100.00  E-value=3.8e-53  Score=505.73  Aligned_cols=519  Identities=30%  Similarity=0.485  Sum_probs=387.0

Q ss_pred             CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCce
Q 006695            1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLV   80 (635)
Q Consensus         1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~   80 (635)
                      |+||++......+.+.+|.+|++|++|.++.+....  .....+++|+++..+|.+||.|+|.+|+++.+|..|.+.+|+
T Consensus       537 i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~--~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~  614 (1153)
T PLN03210        537 ITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ--KKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLV  614 (1153)
T ss_pred             EEeccCccceeeecHHHHhcCccccEEEEecccccc--cccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCc
Confidence            568888888788999999999999999998765431  123446789999999999999999999999999999999999


Q ss_pred             EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695           81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL  160 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l  160 (635)
                      +|+|++|+++.+|.++..+++|+.|+|+++..++.+|+++.+++|+.|+|++|..+..+|.+++.+++|+.|++++|..+
T Consensus       615 ~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        615 KLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             EEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            99999999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCcc-----------------------
Q 006695          161 RSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLE-----------------------  217 (635)
Q Consensus       161 ~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~-----------------------  217 (635)
                      +.+|..+.+++|+.|++++|..++.+|....+|++|++++|.++.+|..+ .+++|+                       
T Consensus       695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~  773 (1153)
T PLN03210        695 EILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLM  773 (1153)
T ss_pred             CccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhh
Confidence            99999889999999999999999999999999999999999999998754 344444                       


Q ss_pred             --------EEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC-ccccCchhcccccch
Q 006695          218 --------KLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA-ITELPSSFANLEGLK  288 (635)
Q Consensus       218 --------~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~  288 (635)
                              .|+|++|.....+|..++++++|+.|+|++|..++.+|... .+++|+.|++++|. +..+|.         
T Consensus       774 ~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~---------  843 (1153)
T PLN03210        774 TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD---------  843 (1153)
T ss_pred             hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc---------
Confidence                    44455454444455555555555555555555444444433 44555555555442 222222         


Q ss_pred             hhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCcccc
Q 006695          289 DLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEV  365 (635)
Q Consensus       289 ~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L  365 (635)
                          ...+|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..   +++|+.|++++|..+..++-  ...+. 
T Consensus       844 ----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l--~~~~~-  916 (1153)
T PLN03210        844 ----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASW--NGSPS-  916 (1153)
T ss_pred             ----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccC--CCCch-
Confidence                136788999999999999999999999999999999999988864   46788889999988876542  11111 


Q ss_pred             chhhhhhhhhcccccccCCccceEEEcCCcccchhhhhHHHHHHHHHHHHHHHHHhhhcccCcccccCCceeecCCCCCC
Q 006695          366 DASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIP  445 (635)
Q Consensus       366 ~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L~~~~~~~i~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP  445 (635)
                      ....+..|...    .++. ...+.|.||++|++.+.          +|..              . ....+++||.++|
T Consensus       917 ~~~~~~~n~~~----~~p~-~~~l~f~nC~~L~~~a~----------l~~~--------------~-~~~~~~l~g~evp  966 (1153)
T PLN03210        917 EVAMATDNIHS----KLPS-TVCINFINCFNLDQEAL----------LQQQ--------------S-IFKQLILSGEEVP  966 (1153)
T ss_pred             hhhhhcccccc----cCCc-hhccccccccCCCchhh----------hccc--------------c-cceEEECCCccCc
Confidence            12222222111    1111 24578999999987652          1110              0 3346789999999


Q ss_pred             cccccCCCCCeEE-EeCCCCCC-CCcceeEEEEEEeecCC-CCCCceEEEEEEEEeecCccceeeeecceEecccCcccc
Q 006695          446 EWFSNQSSGSSIT-VKPPQNCC-RNLIGFALCAVLDYNER-IPSGFSSVFCEYRFEVNALSGIEHVYENCLILASTHELI  522 (635)
Q Consensus       446 ~wf~~~~~g~si~-i~lp~~~~-~~~~gf~~c~v~~~~~~-~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  522 (635)
                      +||.||+.|++++ |++|+.|+ ..|.||++|+|+++.+. .....+++.|.|+|++..+..+..              .
T Consensus       967 ~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~--------------~ 1032 (1153)
T PLN03210        967 SYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFDS--------------P 1032 (1153)
T ss_pred             hhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCcccc--------------C
Confidence            9999999999998 99999999 78999999999988554 223467889999998765543221              2


Q ss_pred             CCCeEEEEEecCCCCCCCCCcccc---cccccccCcCceEEEEEEe----CceEEEeeeeEEeecCCCC
Q 006695          523 DSDHVVLGFNPCWNVGDGDDHRIF---LKFFDIHKHHTAISFEFIC----DSYKVKSCGVCPVYANPSE  584 (635)
Q Consensus       523 ~sdh~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~f~f~~----~~~~VK~CGv~l~y~~d~~  584 (635)
                      ..+|+|+.|....++..+......   .+...++ .+.+|+|+|..    ..++||+||||++|+.+..
T Consensus      1033 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210       1033 YQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLAEL-NYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred             CCceeEeeeccccceEEecccccccccccchhcc-CCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc
Confidence            345555555543332110000000   0001223 45666666654    3469999999999966554

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.9e-34  Score=339.15  Aligned_cols=366  Identities=21%  Similarity=0.232  Sum_probs=178.0

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCC-CCCCCC-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSK-ALPFDF-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~~~-~l~~L   79 (635)
                      +|||++|.+....+..|+++++|++|++++|.+.+        .+|..+..+++ |++|++++|.+. .+|..+ .+++|
T Consensus       144 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~--------~~p~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l~~L  214 (968)
T PLN00113        144 TLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVG--------KIPNSLTNLTS-LEFLTLASNQLVGQIPRELGQMKSL  214 (968)
T ss_pred             EEECcCCcccccCChHHhcCCCCCEEECccCcccc--------cCChhhhhCcC-CCeeeccCCCCcCcCChHHcCcCCc
Confidence            57888888776777778888888888888877652        23444444443 666666666543 344444 45566


Q ss_pred             eEEEcCCCCCc-cccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695           80 VKLNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC  157 (635)
Q Consensus        80 ~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~  157 (635)
                      ++|++++|++. .+|..+..+++|++|++++|.+...+| .++++++|++|++++|...+.+|..+..+++|+.|++++|
T Consensus       215 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  294 (968)
T PLN00113        215 KWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN  294 (968)
T ss_pred             cEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCC
Confidence            66666666555 455555556666666666655554444 3555555555555555555555555555555555555555


Q ss_pred             CCCCccCCCC-CCCCCcEEecCCCCCCC------------------------ccCcc---cCCcceEEecccccc-ccCc
Q 006695          158 KSLRSFPSNL-HFMSPIKIDFSSCFNLT------------------------EFPQI---SGNITDLILSETAIQ-EVPS  208 (635)
Q Consensus       158 ~~l~~lp~~~-~l~~L~~L~l~~c~~l~------------------------~~p~~---~~~L~~L~L~~n~i~-~lp~  208 (635)
                      .....+|..+ .+++|+.|++++|....                        .+|..   ..+|+.|++++|.++ .+|.
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~  374 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPE  374 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCCh
Confidence            4444444333 34444444444443332                        33321   123444444444443 2233


Q ss_pred             ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccc-cCchhcccccc
Q 006695          209 SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE-LPSSFANLEGL  287 (635)
Q Consensus       209 ~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L  287 (635)
                      ++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++. +|..+..+++|
T Consensus       375 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  454 (968)
T PLN00113        375 GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSL  454 (968)
T ss_pred             hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCC
Confidence            33333333333333333333334444444444444444444444444444444444444444444442 22222222222


Q ss_pred             hhhcc-------------CCCCccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccc
Q 006695          288 KDLYI-------------GGSSLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCK  350 (635)
Q Consensus       288 ~~l~~-------------~~~~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~  350 (635)
                      ..+..             ..++|+.|++++|++. .+|..+..+++|+.|+|++|++.+.+|+.   +++|+.|++++|.
T Consensus       455 ~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  534 (968)
T PLN00113        455 QMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQ  534 (968)
T ss_pred             cEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCc
Confidence            21111             1133444444444432 33434444444444444444444444431   2344444444444


Q ss_pred             cccccCccccCccccchhhhhhhhhc
Q 006695          351 QLQFIPEILSGLEEVDASVLEKATFL  376 (635)
Q Consensus       351 ~l~~~~~~~~~L~~L~~l~L~~n~~~  376 (635)
                      ..+.+|..+..+++|+.++|++|++.
T Consensus       535 l~~~~p~~~~~l~~L~~L~Ls~N~l~  560 (968)
T PLN00113        535 LSGQIPASFSEMPVLSQLDLSQNQLS  560 (968)
T ss_pred             ccccCChhHhCcccCCEEECCCCccc
Confidence            44444444444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=9.9e-34  Score=337.81  Aligned_cols=367  Identities=18%  Similarity=0.224  Sum_probs=199.8

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      .|||++|.+....+.+|.++++|+.|+|++|.+++        .+|.++.....+|++|++++|.+....+...+++|++
T Consensus        73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~--------~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~  144 (968)
T PLN00113         73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG--------PIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLET  144 (968)
T ss_pred             EEEecCCCccccCChHHhCCCCCCEEECCCCccCC--------cCChHHhccCCCCCEEECcCCccccccCccccCCCCE
Confidence            57888888777778888888888888888887752        3444443222346666666666542222223556666


Q ss_pred             EEcCCCCCc-cccccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695           82 LNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS  159 (635)
Q Consensus        82 L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~  159 (635)
                      |++++|.+. .+|..+..+++|++|+|++|.+...+|+ ++++++|++|+|++|...+.+|..++.+++|+.|++++|..
T Consensus       145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  224 (968)
T PLN00113        145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNL  224 (968)
T ss_pred             EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCcc
Confidence            666666655 4555566666666666666665555553 55666666666666655555565666666666666665555


Q ss_pred             CCccCCCC-CCCCCcEEecCCCCCCCccCccc---CCcceEEecccccc-ccCcccccCCCccEEEeecccccccchhcc
Q 006695          160 LRSFPSNL-HFMSPIKIDFSSCFNLTEFPQIS---GNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSI  234 (635)
Q Consensus       160 l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~---~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~  234 (635)
                      ...+|..+ .+++|+.|++++|.....+|..+   .+|++|++++|.+. .+|.++..+++|++|++++|.+.+.+|..+
T Consensus       225 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             CCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH
Confidence            54555444 45555555555554433444222   34555555555544 244445555555555555555544445444


Q ss_pred             cCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccch-------------------------
Q 006695          235 CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLK-------------------------  288 (635)
Q Consensus       235 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~-------------------------  288 (635)
                      .++++|+.|++++|.+.+..|..+..+++|+.|++++|.++ .+|..++.+++|.                         
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  384 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK  384 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence            45555555555555444444444444444444444444444 3333333322211                         


Q ss_pred             -------------hhccCCCCccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCC---CCCccceeccccccc
Q 006695          289 -------------DLYIGGSSLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQ  351 (635)
Q Consensus       289 -------------~l~~~~~~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~  351 (635)
                                   ..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+.+|.   .+++|+.|++++|..
T Consensus       385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~  464 (968)
T PLN00113        385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF  464 (968)
T ss_pred             EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence                         12233445555555555543 3444555555555555555555555443   235566666666655


Q ss_pred             ccccCccccCccccchhhhhhhhhcc
Q 006695          352 LQFIPEILSGLEEVDASVLEKATFLN  377 (635)
Q Consensus       352 l~~~~~~~~~L~~L~~l~L~~n~~~~  377 (635)
                      .+.+|..+ ..++|+.|++++|++..
T Consensus       465 ~~~~p~~~-~~~~L~~L~ls~n~l~~  489 (968)
T PLN00113        465 FGGLPDSF-GSKRLENLDLSRNQFSG  489 (968)
T ss_pred             eeecCccc-ccccceEEECcCCccCC
Confidence            55555443 23556666666666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=5.6e-31  Score=271.53  Aligned_cols=336  Identities=18%  Similarity=0.151  Sum_probs=162.8

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCce
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLV   80 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~   80 (635)
                      ||+|+|++.+++...|.++++|+.+++.+|.++.+|         ...... .+|+.|.+.+|.+.++.+. . .++.|+
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP---------~f~~~s-ghl~~L~L~~N~I~sv~se~L~~l~alr  152 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP---------RFGHES-GHLEKLDLRHNLISSVTSEELSALPALR  152 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhhhcc---------cccccc-cceeEEeeeccccccccHHHHHhHhhhh
Confidence            455555555555555555555555555555544222         211111 2245555555544444433 1 344455


Q ss_pred             EEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC
Q 006695           81 KLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK  158 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~  158 (635)
                      .|||+.|.|.+++.. +..-.++++|+|++|++.+.-. .|.++.+|..|.|++|.....-+.+|.++++|+.|+|..|+
T Consensus       153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~  232 (873)
T KOG4194|consen  153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR  232 (873)
T ss_pred             hhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc
Confidence            555555555544422 2222445555555554332221 24444455555555543333333344445555555554433


Q ss_pred             CCCc-cCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccC
Q 006695          159 SLRS-FPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICK  236 (635)
Q Consensus       159 ~l~~-lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~  236 (635)
                      .-.. .-..-++                     ++|+.|.|..|.|..+.+. |..+.++++|+|..|++...-..++.+
T Consensus       233 irive~ltFqgL---------------------~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg  291 (873)
T KOG4194|consen  233 IRIVEGLTFQGL---------------------PSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG  291 (873)
T ss_pred             eeeehhhhhcCc---------------------hhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence            1111 0011133                     4455555555555555443 555556666666665555555555555


Q ss_pred             CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-cc
Q 006695          237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-IT  315 (635)
Q Consensus       237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~  315 (635)
                      +++|+.|+||.|.+...-++.....++|++|+|++|+|+.++..         .+..++.|++|+|++|.+..+.++ +.
T Consensus       292 Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~---------sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  292 LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG---------SFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh---------HHHHHHHhhhhcccccchHHHHhhHHH
Confidence            66666666666555555555555556666666666666655532         122335555555555555555433 45


Q ss_pred             CCCCccEEeccCCCCCCcCCC------CCCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695          316 QLSQLRSLHLKDCSMLSSLPE------LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       316 ~l~~L~~L~L~~n~~l~~lp~------l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      .+++|++|||++|.+...+-+      .+++|+.|++.||+.-......|.+|+.|+.|+|.+|.+...
T Consensus       363 ~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSI  431 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASI  431 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceee
Confidence            555555555555555443332      245555555555543333333555555555555555555444

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=1e-30  Score=269.58  Aligned_cols=348  Identities=20%  Similarity=0.166  Sum_probs=233.8

Q ss_pred             eecCCCcccccChhhhcCCCCCc--EEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCC-CCCc
Q 006695            3 LDLSKITSIHLSPQAFANMPNLR--FLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFE-PENL   79 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~-l~~L   79 (635)
                      ||.+++++..++-.++.++--..  .|++++|.+..+.        +.++..+|+ |+.+.+..|.+..+|.... ..+|
T Consensus        57 ldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id--------~~~f~nl~n-Lq~v~l~~N~Lt~IP~f~~~sghl  127 (873)
T KOG4194|consen   57 LDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHID--------FEFFYNLPN-LQEVNLNKNELTRIPRFGHESGHL  127 (873)
T ss_pred             eecCccccccccccccCCcCccceeeeeccccccccCc--------HHHHhcCCc-ceeeeeccchhhhcccccccccce
Confidence            45555555555444444433222  3555555554211        233344444 5555555555555555442 3345


Q ss_pred             eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCC-CCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695           80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIR-MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC  157 (635)
Q Consensus        80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~-~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~  157 (635)
                      +.|+|.+|.|.++- +.++.++.|+.||||.|.+... .|.|..-.++++|+|++|.+...-...|..+.+|..|.|+.|
T Consensus       128 ~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrN  207 (873)
T KOG4194|consen  128 EKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRN  207 (873)
T ss_pred             eEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccC
Confidence            55555555555442 3345555555555555543321 123444455555555555544444445555555555555553


Q ss_pred             CCCCccCCCCCCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchh
Q 006695          158 KSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLST  232 (635)
Q Consensus       158 ~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~  232 (635)
                                              .++.+|.    .++.|+.|+|..|.|..+. ..|.++++|+.|.|..|.+...-..
T Consensus       208 ------------------------rittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG  263 (873)
T KOG4194|consen  208 ------------------------RITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG  263 (873)
T ss_pred             ------------------------cccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence                                    3333332    2356778888888888773 4589999999999999999888888


Q ss_pred             cccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc
Q 006695          233 SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA  312 (635)
Q Consensus       233 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~  312 (635)
                      .|..+.++++|+|..|++...-..++.++++|+.|++++|.|..+...-+         ...++|++|+|++|+++.+++
T Consensus       264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W---------sftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW---------SFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh---------hhcccceeEeccccccccCCh
Confidence            99999999999999999988777889999999999999999997743222         345899999999999999976


Q ss_pred             -cccCCCCccEEeccCCCCCCcCCC----CCCccceeccccccccccc---CccccCccccchhhhhhhhhccc---ccc
Q 006695          313 -SITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQFI---PEILSGLEEVDASVLEKATFLNS---AFT  381 (635)
Q Consensus       313 -~l~~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l~~~---~~~~~~L~~L~~l~L~~n~~~~~---~~~  381 (635)
                       .+..|..|++|+|++|.+ ..+.+    .+++|+.||+++|...-.+   ...|.+|+.|+.|.+.+|++...   .|.
T Consensus       335 ~sf~~L~~Le~LnLs~Nsi-~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfs  413 (873)
T KOG4194|consen  335 GSFRVLSQLEELNLSHNSI-DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFS  413 (873)
T ss_pred             hHHHHHHHhhhhcccccch-HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhc
Confidence             489999999999999765 44443    4689999999999875444   45788999999999999998766   344


Q ss_pred             cCCccceEEEcC
Q 006695          382 LNSACVKFVFSN  393 (635)
Q Consensus       382 l~~~~~~l~~~n  393 (635)
                      ....++.|++.+
T Consensus       414 gl~~LE~LdL~~  425 (873)
T KOG4194|consen  414 GLEALEHLDLGD  425 (873)
T ss_pred             cCcccceecCCC
Confidence            333445665554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=1.1e-29  Score=263.31  Aligned_cols=339  Identities=22%  Similarity=0.314  Sum_probs=216.2

Q ss_pred             eecCCCccc-ccChhhhcCCCCCcEEEeecCCCCCCcccceee--------------ecCCcccCCCccceEeecCCCCC
Q 006695            3 LDLSKITSI-HLSPQAFANMPNLRFLKFYMPEHNGVPIMISKV--------------HLDQGLEYLPNELRYLHWHEYPS   67 (635)
Q Consensus         3 LdLs~n~~~-~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~--------------~l~~~l~~l~~~L~~L~l~~~~l   67 (635)
                      .|+|+|.+. .--|.....|+.++.|.|...++..+|.....+              .+-+.+..+|. ||.+....|.+
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~-LRsv~~R~N~L   90 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPR-LRSVIVRDNNL   90 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchh-hHHHhhhcccc
Confidence            477777765 444666777888888888776666333211111              22233444444 55556665555


Q ss_pred             C--CCCCC-CCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCC--CCCCCCCCEEeecCCCCCcccCcc
Q 006695           68 K--ALPFD-FEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERTNLKNCINLTCVPSS  142 (635)
Q Consensus        68 ~--~lp~~-~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~L~~n~~l~~~~~~  142 (635)
                      +  -+|.. |.+..|+.|||++|++++.|.++...+++-+|+||+|++ ..+|.  +.+++.|-.|+|++| .+..+|+.
T Consensus        91 KnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ  168 (1255)
T KOG0444|consen   91 KNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQ  168 (1255)
T ss_pred             ccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHH
Confidence            3  35554 466777777777777777777766666777777777663 33442  556666667777765 55666666


Q ss_pred             ccCCCCCCEEeecCCCCC----CccCCCCCCCCCcEEecCCCC-CCCccCccc---CCcceEEeccccccccCcccccCC
Q 006695          143 VQNFNHLSMLCFEGCKSL----RSFPSNLHFMSPIKIDFSSCF-NLTEFPQIS---GNITDLILSETAIQEVPSSIECLT  214 (635)
Q Consensus       143 i~~l~~L~~L~L~~~~~l----~~lp~~~~l~~L~~L~l~~c~-~l~~~p~~~---~~L~~L~L~~n~i~~lp~~~~~l~  214 (635)
                      +..+..|++|.|++|...    ..+|+   +++|+.|.+++-+ .+..+|..+   .||..++++.|.+..+|..+..+.
T Consensus       169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~  245 (1255)
T KOG0444|consen  169 IRRLSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLR  245 (1255)
T ss_pred             HHHHhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhh
Confidence            777777777777666532    23333   5566666666543 233455333   466677777777777777777777


Q ss_pred             CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc--ccCchhcccccchhhcc
Q 006695          215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT--ELPSSFANLEGLKDLYI  292 (635)
Q Consensus       215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~l~~  292 (635)
                      +|+.|+|++|++++ +....+...+|++|++|.|. +..+|..+..++.|+.|.+.+|+++  .||+.|+.         
T Consensus       246 ~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK---------  314 (1255)
T KOG0444|consen  246 NLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK---------  314 (1255)
T ss_pred             hhheeccCcCceee-eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhh---------
Confidence            77777777766543 33334455667777777754 3456777777777777777777665  56666544         


Q ss_pred             CCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCcccc
Q 006695          293 GGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILS  360 (635)
Q Consensus       293 ~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~  360 (635)
                       +..|+.+..++|.+.-+|.++..+..|+.|.|++|. +-.+|+   +++.|+.||++.|+.+...|.+-.
T Consensus       315 -L~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d  383 (1255)
T KOG0444|consen  315 -LIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLRENPNLVMPPKPND  383 (1255)
T ss_pred             -hhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence             467778888888888888888888888888888654 445665   567888888888888877665443

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.94  E-value=4.2e-29  Score=258.97  Aligned_cols=314  Identities=21%  Similarity=0.306  Sum_probs=266.8

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCce
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLV   80 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~   80 (635)
                      +|.+++|++.++ ...++.++.||.+.+..|++..       --+|.++..+-. |..|++++|.++..|... ..+++.
T Consensus        59 HLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKn-------sGiP~diF~l~d-Lt~lDLShNqL~EvP~~LE~AKn~i  129 (1255)
T KOG0444|consen   59 HLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKN-------SGIPTDIFRLKD-LTILDLSHNQLREVPTNLEYAKNSI  129 (1255)
T ss_pred             hhhhhhhhhHhh-hhhhccchhhHHHhhhcccccc-------CCCCchhccccc-ceeeecchhhhhhcchhhhhhcCcE
Confidence            355667776665 3457777778888887777652       246788888865 999999999999999997 789999


Q ss_pred             EEEcCCCCCccccccC-CCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695           81 KLNLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS  159 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~  159 (635)
                      +|+|++|+|+++|..+ .+++-|-.||||+|++-...|.+..+.+|++|.|++|+..-.--..+-.+++|++|.+++.+.
T Consensus       130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence            9999999999999775 789999999999999777777899999999999999976543333455677888888887543


Q ss_pred             -CCccCCCC-CCCCCcEEecCCCCCCCccCccc---CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcc
Q 006695          160 -LRSFPSNL-HFMSPIKIDFSSCFNLTEFPQIS---GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSI  234 (635)
Q Consensus       160 -l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~---~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~  234 (635)
                       +..+|.++ .+.+|..++++. +++..+|+..   .+|+.|+|++|.|+++....+...+|++|+|+.|++ ..+|..+
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL-t~LP~av  287 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL-TVLPDAV  287 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh-ccchHHH
Confidence             45788887 889999999987 5777777654   789999999999999998899999999999999886 5789999


Q ss_pred             cCCCCCcEEecCCCCCC-CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc
Q 006695          235 CKLKSLHVLVLDDCSKL-ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS  313 (635)
Q Consensus       235 ~~l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~  313 (635)
                      ++++.|+.|.+.+|.+. +-+|..++.+.+|+.+..++|.+.-+|..++.          +..|+.|.|+.|++.++|+.
T Consensus       288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcR----------C~kL~kL~L~~NrLiTLPea  357 (1255)
T KOG0444|consen  288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCR----------CVKLQKLKLDHNRLITLPEA  357 (1255)
T ss_pred             hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhh----------hHHHHHhcccccceeechhh
Confidence            99999999999998764 46899999999999999999999999988754          57899999999999999999


Q ss_pred             ccCCCCccEEeccCCCCCCcCCC
Q 006695          314 ITQLSQLRSLHLKDCSMLSSLPE  336 (635)
Q Consensus       314 l~~l~~L~~L~L~~n~~l~~lp~  336 (635)
                      |.-|+.|+.||+..|+.+..-|.
T Consensus       358 IHlL~~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  358 IHLLPDLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             hhhcCCcceeeccCCcCccCCCC
Confidence            99999999999999999877664

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.94  E-value=8.5e-30  Score=252.61  Aligned_cols=326  Identities=20%  Similarity=0.236  Sum_probs=237.5

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceee--------------ecCCcccCCCccceEeecCCCCCC
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKV--------------HLDQGLEYLPNELRYLHWHEYPSK   68 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~--------------~l~~~l~~l~~~L~~L~l~~~~l~   68 (635)
                      |++++|.+..+. ..+.++..|.+|++++|.+...|..++..              .+|+.+..++. ++.|+.+.|.++
T Consensus        50 lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~-l~~l~~s~n~~~  127 (565)
T KOG0472|consen   50 LILSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLIS-LVKLDCSSNELK  127 (565)
T ss_pred             hhhccCchhhcc-HhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhh-hhhhhcccccee
Confidence            567777765554 34677777788888877777555433322              35555555554 788888888888


Q ss_pred             CCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCC
Q 006695           69 ALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFN  147 (635)
Q Consensus        69 ~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~  147 (635)
                      .+|+.+ .+..|..|+..+|++..+|+++..+.+|..+++.+|++....|+.-.++.|++|+...| .++.+|+.++.+.
T Consensus       128 el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~  206 (565)
T KOG0472|consen  128 ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLE  206 (565)
T ss_pred             ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchh
Confidence            888875 67788888888888888888888888888888888886666666555888888888876 7788888999999


Q ss_pred             CCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccCcccccCCCccEEEeec
Q 006695          148 HLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVPSSIECLTNLEKLYINR  223 (635)
Q Consensus       148 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~  223 (635)
                      +|..|++..| .+..+|..-++..|+++.++. +.++.+|.    .+..+..|+|..|+++++|..+.-+.+|++||+++
T Consensus       207 ~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN  284 (565)
T KOG0472|consen  207 SLELLYLRRN-KIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN  284 (565)
T ss_pred             hhHHHHhhhc-ccccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC
Confidence            9999999885 467777655788888888776 45565653    34678889999999999999999999999999999


Q ss_pred             ccccccchhcccCCCCCcEEecCCCCCCCc-------------------------------------ch-hh---hcCCC
Q 006695          224 CMRLKRLSTSICKLKSLHVLVLDDCSKLER-------------------------------------FP-EI---LEKME  262 (635)
Q Consensus       224 n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~-------------------------------------~~-~~---l~~l~  262 (635)
                      |.+. .+|.+++++ .|+.|-+.||.+.+.                                     .+ ..   ...+-
T Consensus       285 N~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i  362 (565)
T KOG0472|consen  285 NDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII  362 (565)
T ss_pred             Cccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence            8765 578888999 899999999876210                                     00 00   01122


Q ss_pred             CCCEEEecCCCccccCc--------------------------hhccccc--------------chhhccCCCCccEEEc
Q 006695          263 SVKCISLERTAITELPS--------------------------SFANLEG--------------LKDLYIGGSSLRQLNL  302 (635)
Q Consensus       263 ~L~~L~L~~n~l~~lp~--------------------------~~~~l~~--------------L~~l~~~~~~L~~L~L  302 (635)
                      +.+.|++++-+++.+|+                          .+..+..              .+..+..+++|+.|+|
T Consensus       363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L  442 (565)
T KOG0472|consen  363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDL  442 (565)
T ss_pred             hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeec
Confidence            34455555545554444                          3322222              2233445689999999


Q ss_pred             CCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695          303 SRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE  336 (635)
Q Consensus       303 s~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~  336 (635)
                      ++|.+..+|..++.+..|+.|+++.|+ ...+|+
T Consensus       443 ~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~lP~  475 (565)
T KOG0472|consen  443 SNNLLNDLPEEMGSLVRLQTLNLSFNR-FRMLPE  475 (565)
T ss_pred             ccchhhhcchhhhhhhhhheecccccc-cccchH
Confidence            999999999999999999999999974 445554

>PLN03210 Resistant to P

Probab=99.91  E-value=4.9e-23  Score=247.08  Aligned_cols=291  Identities=29%  Similarity=0.487  Sum_probs=226.9

Q ss_pred             hhhhcCC-CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCceEEEcCCCC-Ccc
Q 006695           15 PQAFANM-PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLVKLNLPYSK-VVQ   91 (635)
Q Consensus        15 ~~~f~~l-~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~-l~~   91 (635)
                      +..|..+ .+||.|.+.++.+.         .+|..+.  +.+|+.|++.++.+..+|..+ .+++|+.|+|+++. ++.
T Consensus       581 p~~~~~lp~~Lr~L~~~~~~l~---------~lP~~f~--~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~  649 (1153)
T PLN03210        581 PEGFDYLPPKLRLLRWDKYPLR---------CMPSNFR--PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE  649 (1153)
T ss_pred             CcchhhcCcccEEEEecCCCCC---------CCCCcCC--ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc
Confidence            4456665 46899998887776         3444442  346888888888888888776 67888888888764 566


Q ss_pred             ccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCC
Q 006695           92 IWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFM  170 (635)
Q Consensus        92 l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~  170 (635)
                      +| .+..+++|+.|+|++|..+..+| .++.+++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|..  ..
T Consensus       650 ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~  725 (1153)
T PLN03210        650 IP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--ST  725 (1153)
T ss_pred             CC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cC
Confidence            65 36778888888888887777777 47788888888888888888887765 6788888888888777666542  34


Q ss_pred             CCcEEecCCCCCCCccCc---------------------------------ccCCcceEEeccc-cccccCcccccCCCc
Q 006695          171 SPIKIDFSSCFNLTEFPQ---------------------------------ISGNITDLILSET-AIQEVPSSIECLTNL  216 (635)
Q Consensus       171 ~L~~L~l~~c~~l~~~p~---------------------------------~~~~L~~L~L~~n-~i~~lp~~~~~l~~L  216 (635)
                      +|+.|+++++. ++.+|.                                 .+++|+.|++++| .+.++|.+++++++|
T Consensus       726 nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L  804 (1153)
T PLN03210        726 NISWLDLDETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKL  804 (1153)
T ss_pred             CcCeeecCCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCC
Confidence            55555555543 233331                                 1247888999887 466799999999999


Q ss_pred             cEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695          217 EKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS  296 (635)
Q Consensus       217 ~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~  296 (635)
                      +.|++++|..++.+|..+ .+++|+.|++++|..+..+|..   .++|+.|+|++|.|+++|.++.          .+++
T Consensus       805 ~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~----------~l~~  870 (1153)
T PLN03210        805 EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIE----------KFSN  870 (1153)
T ss_pred             CEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHh----------cCCC
Confidence            999999999999998776 7999999999999998887764   4689999999999999998764          4589


Q ss_pred             ccEEEcCCCC-CCcccccccCCCCccEEeccCCCCCCcCC
Q 006695          297 LRQLNLSRND-SESLPASITQLSQLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       297 L~~L~Ls~n~-~~~lp~~l~~l~~L~~L~L~~n~~l~~lp  335 (635)
                      |+.|+|++|+ +..+|..+..+++|+.|++++|..+..++
T Consensus       871 L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        871 LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             CCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence            9999999965 88999889999999999999999887654

syringae 6; Provisional

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.91  E-value=1.8e-26  Score=229.04  Aligned_cols=323  Identities=22%  Similarity=0.296  Sum_probs=247.2

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEE
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKL   82 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L   82 (635)
                      ||+.+|++..++++.+. |+.|+.|+...|.++         .+|+.+..+.. |..|++.+|.+..+|+.-+...|++|
T Consensus       165 l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~---------tlP~~lg~l~~-L~~LyL~~Nki~~lPef~gcs~L~El  233 (565)
T KOG0472|consen  165 LDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE---------TLPPELGGLES-LELLYLRRNKIRFLPEFPGCSLLKEL  233 (565)
T ss_pred             hhccccchhhCCHHHHH-HHHHHhcccchhhhh---------cCChhhcchhh-hHHHHhhhcccccCCCCCccHHHHHH
Confidence            67788888888877777 888999988888777         56677777654 88899999999999943478899999


Q ss_pred             EcCCCCCccccccC-CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695           83 NLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL  160 (635)
Q Consensus        83 ~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l  160 (635)
                      ++..|.|+.+|+.. +++.+|.+|||.+|+ ++..| ++..+.+|++||+++| ....+|.+++++ .|+.|-+.||..-
T Consensus       234 h~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlr  310 (565)
T KOG0472|consen  234 HVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLR  310 (565)
T ss_pred             HhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchH
Confidence            99999999998776 589999999999998 55666 4888899999999987 567788899999 9999999887421


Q ss_pred             Cc------------------------------------------cCCCCCCCCCcEEecCCCCCCCccCccc------CC
Q 006695          161 RS------------------------------------------FPSNLHFMSPIKIDFSSCFNLTEFPQIS------GN  192 (635)
Q Consensus       161 ~~------------------------------------------lp~~~~l~~L~~L~l~~c~~l~~~p~~~------~~  192 (635)
                      +.                                          +|..-...+.+.|++++ ..++.+|...      .-
T Consensus       311 TiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~-~qlt~VPdEVfea~~~~~  389 (565)
T KOG0472|consen  311 TIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD-KQLTLVPDEVFEAAKSEI  389 (565)
T ss_pred             HHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc-cccccCCHHHHHHhhhcc
Confidence            10                                          00000233456666666 4556666321      23


Q ss_pred             cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      ++..++++|.+.++|..+..+..+++.-+..++..+-.|..++.+++|..|+|++ +.+..+|..++.+..|+.|+++.|
T Consensus       390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N  468 (565)
T KOG0472|consen  390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN  468 (565)
T ss_pred             eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence            6788999999999998888777777666666667778888889999999999998 567788999999999999999999


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCCC---CCccceecccc
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAEN  348 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~  348 (635)
                      ++..+|..+..+          ..|+.+-.++|++++++.. ++++.+|.+|||.+|. ++.+|+.   ..+|++|+++|
T Consensus       469 rFr~lP~~~y~l----------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~g  537 (565)
T KOG0472|consen  469 RFRMLPECLYEL----------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDG  537 (565)
T ss_pred             ccccchHHHhhH----------HHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecC
Confidence            999998765333          4455556666778877655 7888888888888654 4445542   46788888888


Q ss_pred             cccc
Q 006695          349 CKQL  352 (635)
Q Consensus       349 c~~l  352 (635)
                      |++-
T Consensus       538 Npfr  541 (565)
T KOG0472|consen  538 NPFR  541 (565)
T ss_pred             CccC
Confidence            8764

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.90  E-value=5e-26  Score=246.86  Aligned_cols=378  Identities=20%  Similarity=0.215  Sum_probs=272.8

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCce
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLV   80 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~   80 (635)
                      .|++..|-....+-+...+.-+|+.|++++|++.         .+|..+..++. |+.|.++.|.++++|... .+.+|+
T Consensus        25 ~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~---------~fp~~it~l~~-L~~ln~s~n~i~~vp~s~~~~~~l~   94 (1081)
T KOG0618|consen   25 ILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS---------SFPIQITLLSH-LRQLNLSRNYIRSVPSSCSNMRNLQ   94 (1081)
T ss_pred             hhhccccccccCchHHhhheeeeEEeeccccccc---------cCCchhhhHHH-HhhcccchhhHhhCchhhhhhhcch
Confidence            4667777766666677777777999999999887         56677777765 999999999999999775 789999


Q ss_pred             EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCC-------------------CCEEeecCCCCCcccCc
Q 006695           81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPN-------------------LERTNLKNCINLTCVPS  141 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~-------------------L~~L~L~~n~~l~~~~~  141 (635)
                      +|.|.+|.+..+|.++..+++|++||+++|.+....+-+..+..                   ++.+++..|...+.++.
T Consensus        95 ~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~  174 (1081)
T KOG0618|consen   95 YLNLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLI  174 (1081)
T ss_pred             hheeccchhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhc
Confidence            99999999999999999999999999999987654333333333                   44555555555555555


Q ss_pred             cccCCCCCCEEeecCCCCC----------CccCC--------CCCCCCCcEEecCCCCCCCccCc-ccCCcceEEecccc
Q 006695          142 SVQNFNHLSMLCFEGCKSL----------RSFPS--------NLHFMSPIKIDFSSCFNLTEFPQ-ISGNITDLILSETA  202 (635)
Q Consensus       142 ~i~~l~~L~~L~L~~~~~l----------~~lp~--------~~~l~~L~~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~  202 (635)
                      .+..++.  .|+|++|...          +.+--        .+..++|+.|..+.|...+..+. .+.+|++++++.|+
T Consensus       175 ~i~~l~~--~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~  252 (1081)
T KOG0618|consen  175 DIYNLTH--QLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN  252 (1081)
T ss_pred             chhhhhe--eeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhh
Confidence            5665555  5777666543          11100        00345566666667665544443 33689999999999


Q ss_pred             ccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhc
Q 006695          203 IQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFA  282 (635)
Q Consensus       203 i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~  282 (635)
                      ++.+|+|++.+.+|+.|+..+|.+ ..+|..+....+|+.|.+..|. +..+|...+.+++|++|+|..|+|..+|+.+-
T Consensus       253 l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l  330 (1081)
T KOG0618|consen  253 LSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFL  330 (1081)
T ss_pred             hhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHH
Confidence            999999999999999999999987 6778788888888888888865 44566677778888888888888888876432


Q ss_pred             cccc--------------------------ch--------------hhccCCCCccEEEcCCCCCCccccc-ccCCCCcc
Q 006695          283 NLEG--------------------------LK--------------DLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLR  321 (635)
Q Consensus       283 ~l~~--------------------------L~--------------~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~  321 (635)
                      ....                          |.              ..+.+..+|+.|+|++|++.++|+. +.++..|+
T Consensus       331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le  410 (1081)
T KOG0618|consen  331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE  410 (1081)
T ss_pred             hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence            1111                          11              1223458899999999999999975 68999999


Q ss_pred             EEeccCCCCCCcCCC---CCCccceecccccccccccCccccCccccchhhhhhhhhccc--ccccC-CccceEEEcCCc
Q 006695          322 SLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS--AFTLN-SACVKFVFSNCL  395 (635)
Q Consensus       322 ~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~--~~~l~-~~~~~l~~~nC~  395 (635)
                      +|+|++|+ ++.+|.   ..+.|++|.+++|. +...| .+..++.|+.+|++.|.+...  .+..+ ..+++|+++.-.
T Consensus       411 eL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~-l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  411 ELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQ-LLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             HHhcccch-hhhhhHHHHhhhhhHHHhhcCCc-eeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            99999964 555665   24677777777764 34455 677777777888777777665  23333 334666666655


Q ss_pred             c
Q 006695          396 K  396 (635)
Q Consensus       396 ~  396 (635)
                      +
T Consensus       488 ~  488 (1081)
T KOG0618|consen  488 R  488 (1081)
T ss_pred             c
Confidence            4

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.86  E-value=4.4e-21  Score=215.02  Aligned_cols=241  Identities=20%  Similarity=0.231  Sum_probs=156.8

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      +|+.|.+.+|.++.+|..  +++|++|++++|+|+.+|..   .++|+.|++++|.+ ..+|.+  ..+|+.|++++|. 
T Consensus       223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l--p~~L~~L~Ls~N~-  293 (788)
T PRK15387        223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL--PSGLCKLWIFGNQ-  293 (788)
T ss_pred             CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc--hhhcCEEECcCCc-
Confidence            355555655655555542  35566666666666655532   24555666666553 233321  2455566666653 


Q ss_pred             CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCC
Q 006695          136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTN  215 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~  215 (635)
                      +..+|.   .+++|+.|++++|+ +..+|..  ..+|+.|.+++| .++.+|..+.+|+.|+|++|.|+.+|..   ..+
T Consensus       294 Lt~LP~---~p~~L~~LdLS~N~-L~~Lp~l--p~~L~~L~Ls~N-~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~  363 (788)
T PRK15387        294 LTSLPV---LPPGLQELSVSDNQ-LASLPAL--PSELCKLWAYNN-QLTSLPTLPSGLQELSVSDNQLASLPTL---PSE  363 (788)
T ss_pred             cccccc---cccccceeECCCCc-cccCCCC--cccccccccccC-ccccccccccccceEecCCCccCCCCCC---Ccc
Confidence            333443   23456666666543 3334431  234556666653 4556666667788888888888888764   356


Q ss_pred             ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695          216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS  295 (635)
Q Consensus       216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~  295 (635)
                      |+.|++++|.+.. +|..   ..+|+.|++++|.+.+ +|..   .++|+.|++++|.++.+|...             .
T Consensus       364 L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l~-------------~  422 (788)
T PRK15387        364 LYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPMLP-------------S  422 (788)
T ss_pred             cceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcch-------------h
Confidence            7778888877653 5543   3578889998887654 5543   367999999999999888532             4


Q ss_pred             CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695          296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE  336 (635)
Q Consensus       296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~  336 (635)
                      +|+.|++++|+++.+|..+.++++|+.|+|++|++.+..+.
T Consensus       423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHH
Confidence            67889999999999999999999999999999998876654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.84  E-value=7.8e-23  Score=222.28  Aligned_cols=323  Identities=23%  Similarity=0.287  Sum_probs=232.8

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEE
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKL   82 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L   82 (635)
                      |||++|++.   .-....+.+|+.|....|++..             +..--.+|+.|..++|++..+-..+.+.+|+.+
T Consensus       183 ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~-------------l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~  246 (1081)
T KOG0618|consen  183 LDLRYNEME---VLDLSNLANLEVLHCERNQLSE-------------LEISGPSLTALYADHNPLTTLDVHPVPLNLQYL  246 (1081)
T ss_pred             eecccchhh---hhhhhhccchhhhhhhhcccce-------------EEecCcchheeeeccCcceeeccccccccceee
Confidence            566666544   2334555666666666665541             111122488888889988877667788999999


Q ss_pred             EcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695           83 NLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR  161 (635)
Q Consensus        83 ~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~  161 (635)
                      ++++|+++.+|+.+..+.+|+.|++.+|.+ ..+| .+....+|+.|.+..| .+..+|.....++.|++|+|..|+ +.
T Consensus       247 dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~-L~  323 (1081)
T KOG0618|consen  247 DISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNN-LP  323 (1081)
T ss_pred             ecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhcc-cc
Confidence            999999999998899999999999999986 5555 5888889999998887 567777788888888999887753 44


Q ss_pred             ccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCC
Q 006695          162 SFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSL  240 (635)
Q Consensus       162 ~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L  240 (635)
                      .+|..+    +..              ....+..|..+.|.+..+|.. =..++.|+.|.+.+|.+....-..+.+.++|
T Consensus       324 ~lp~~~----l~v--------------~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL  385 (1081)
T KOG0618|consen  324 SLPDNF----LAV--------------LNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL  385 (1081)
T ss_pred             ccchHH----Hhh--------------hhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence            555421    000              001245555566666666633 2346678888888888887766678888899


Q ss_pred             cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCc
Q 006695          241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL  320 (635)
Q Consensus       241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L  320 (635)
                      +.|+|++|.+.......+.+++.|++|+|+||+++.+|..+.+          +..|++|...+|++..+| .+..++.|
T Consensus       386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~----------~~~L~tL~ahsN~l~~fP-e~~~l~qL  454 (1081)
T KOG0618|consen  386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVAN----------LGRLHTLRAHSNQLLSFP-ELAQLPQL  454 (1081)
T ss_pred             eeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHh----------hhhhHHHhhcCCceeech-hhhhcCcc
Confidence            9999998765544445678888999999999999998877644          477888888889988888 78889999


Q ss_pred             cEEeccCCCCCC-cCCC-CC-CccceecccccccccccCccccCccccchhhhhhh
Q 006695          321 RSLHLKDCSMLS-SLPE-LP-QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKA  373 (635)
Q Consensus       321 ~~L~L~~n~~l~-~lp~-l~-~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n  373 (635)
                      +.+|++.|++.. .+|+ .| +.|++||++||..+..--..+..+..+...++.-+
T Consensus       455 ~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  455 KVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             eEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            999999877654 3444 45 78999999999865544445555555555555544

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=3.3e-20  Score=208.00  Aligned_cols=257  Identities=23%  Similarity=0.278  Sum_probs=134.4

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      +-..|+++++.++++|..+. .+|+.|++.+|+++.+|..   +++|++|+|++|++. .+|.+  .++|+.|++++|. 
T Consensus       202 ~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-  273 (788)
T PRK15387        202 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-  273 (788)
T ss_pred             CCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-
Confidence            45567777777777776553 3677777777777777643   466777777777644 34432  3566777777663 


Q ss_pred             CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCC
Q 006695          136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTN  215 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~  215 (635)
                      +..+|..   ..+|+.|++++|+ ++.+|.  ..++|+.|++++| .++.+|..+.+|+.|++++|.++.+|..      
T Consensus       274 L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l------  340 (788)
T PRK15387        274 LTHLPAL---PSGLCKLWIFGNQ-LTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL------  340 (788)
T ss_pred             hhhhhhc---hhhcCEEECcCCc-cccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc------
Confidence            3344432   2445566666543 334443  1234555555443 3334444444444444444444444421      


Q ss_pred             ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695          216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS  295 (635)
Q Consensus       216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~  295 (635)
                                           ..+|+.|+|++|.+.+ +|..   ..+|+.|++++|.|+.+|..             ..
T Consensus       341 ---------------------p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l-------------~~  382 (788)
T PRK15387        341 ---------------------PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL-------------PS  382 (788)
T ss_pred             ---------------------ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc-------------cc
Confidence                                 1245555555544332 2321   23445555555555555431             13


Q ss_pred             CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695          296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF  375 (635)
Q Consensus       296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~  375 (635)
                      +|+.|++++|+++.+|..   .++|+.|++++|++ ..+|..+.+|+.|++++|. ++.+|..+..+++|..++|++|++
T Consensus       383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L-ssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRL-TSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             ccceEEecCCcccCCCCc---ccCCCEEEccCCcC-CCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCCC
Confidence            455555555555555532   23455556655543 3355555555556665554 334555555555555555555554


Q ss_pred             c
Q 006695          376 L  376 (635)
Q Consensus       376 ~  376 (635)
                      .
T Consensus       458 s  458 (788)
T PRK15387        458 S  458 (788)
T ss_pred             C
Confidence            3

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.78  E-value=6.5e-19  Score=198.85  Aligned_cols=245  Identities=20%  Similarity=0.270  Sum_probs=167.9

Q ss_pred             ccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCC
Q 006695           55 NELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNC  133 (635)
Q Consensus        55 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n  133 (635)
                      ++...|+++++.++++|..+ +++|+.|++++|+++.+|..+.  .+|+.|++++|.+. .+|. +  .++|+.|+|++|
T Consensus       178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls~N  251 (754)
T PRK15370        178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELSIN  251 (754)
T ss_pred             cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECcCC
Confidence            35677888888888877654 3578888888888888776654  47888888887744 4553 3  246888888887


Q ss_pred             CCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcc-cCCcceEEeccccccccCccccc
Q 006695          134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQI-SGNITDLILSETAIQEVPSSIEC  212 (635)
Q Consensus       134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~-~~~L~~L~L~~n~i~~lp~~~~~  212 (635)
                      .. ..+|..+.  ++|+.|++++| .+..+|..+. .+|+.|++++| .++.+|.. ..+|+.|++++|.++.+|..+. 
T Consensus       252 ~L-~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l~-~sL~~L~Ls~N-~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~-  324 (754)
T PRK15370        252 RI-TELPERLP--SALQSLDLFHN-KISCLPENLP-EELRYLSVYDN-SIRTLPAHLPSGITHLNVQSNSLTALPETLP-  324 (754)
T ss_pred             cc-CcCChhHh--CCCCEEECcCC-ccCccccccC-CCCcEEECCCC-ccccCcccchhhHHHHHhcCCccccCCcccc-
Confidence            43 46666553  47888888765 4556666442 47777887775 45556643 3467888888888888776543 


Q ss_pred             CCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhcc
Q 006695          213 LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI  292 (635)
Q Consensus       213 l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~  292 (635)
                       ++|+.|++++|.+.+ +|..+.  ++|+.|++++|++. .+|..+.  ++|+.|++++|.++.+|..+.          
T Consensus       325 -~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~LP~~l~----------  387 (754)
T PRK15370        325 -PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTNLPENLP----------  387 (754)
T ss_pred             -ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCCCCHhHH----------
Confidence             578888888877654 555443  67888888887654 4555442  578888888888888776541          


Q ss_pred             CCCCccEEEcCCCCCCcccccc----cCCCCccEEeccCCCCC
Q 006695          293 GGSSLRQLNLSRNDSESLPASI----TQLSQLRSLHLKDCSML  331 (635)
Q Consensus       293 ~~~~L~~L~Ls~n~~~~lp~~l----~~l~~L~~L~L~~n~~l  331 (635)
                        .+|+.|++++|++..+|..+    ..++++..|+|.+|++.
T Consensus       388 --~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 --AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             --HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence              35777888888887777654    34577778888887764

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=6.3e-18  Score=190.93  Aligned_cols=249  Identities=17%  Similarity=0.301  Sum_probs=193.1

Q ss_pred             CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCC
Q 006695           22 PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFK  101 (635)
Q Consensus        22 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~  101 (635)
                      .+...|+++++.++.+         |..   +|..|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+.  .+
T Consensus       178 ~~~~~L~L~~~~LtsL---------P~~---Ip~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~  242 (754)
T PRK15370        178 NNKTELRLKILGLTTI---------PAC---IPEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DT  242 (754)
T ss_pred             cCceEEEeCCCCcCcC---------Ccc---cccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--cc
Confidence            4578899988877733         333   24469999999999999998753 589999999999999887654  47


Q ss_pred             CcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCC
Q 006695          102 LKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC  180 (635)
Q Consensus       102 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c  180 (635)
                      |+.|+|++|.+. .+|. +.  .+|+.|++++|. +..+|..+.  ++|+.|++++|+ ++.+|..+. .+|+.|++++|
T Consensus       243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp-~sL~~L~Ls~N  314 (754)
T PRK15370        243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNS-IRTLPAHLP-SGITHLNVQSN  314 (754)
T ss_pred             ccEEECcCCccC-cCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCc-cccCcccch-hhHHHHHhcCC
Confidence            999999999865 5563 32  589999999874 446777654  589999998874 556765442 57888999885


Q ss_pred             CCCCccCc-ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695          181 FNLTEFPQ-ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE  259 (635)
Q Consensus       181 ~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~  259 (635)
                       .++.+|. .+.+|+.|++++|.++.+|..+.  ++|+.|++++|++. .+|..+  .++|+.|+|++|.+. .+|..+.
T Consensus       315 -~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~  387 (754)
T PRK15370        315 -SLTALPETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP  387 (754)
T ss_pred             -ccccCCccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH
Confidence             4556664 45789999999999999998764  79999999999875 466655  368999999999876 4566554


Q ss_pred             CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                        .+|+.|++++|+++.+|..+..      +...++.+..|++.+|.+.
T Consensus       388 --~sL~~LdLs~N~L~~LP~sl~~------~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        388 --AALQIMQASRNNLVRLPESLPH------FRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             --HHHHHHhhccCCcccCchhHHH------HhhcCCCccEEEeeCCCcc
Confidence              3799999999999999976533      3455688999999999976

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.70  E-value=8.3e-20  Score=181.81  Aligned_cols=364  Identities=16%  Similarity=0.127  Sum_probs=241.8

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L   79 (635)
                      .++|..|.|..|++.+|+.+++||.|+|++|.|+.|        -|..++.++.-++.+...+|.++++|.. | ++..|
T Consensus        71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I--------~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~sl  142 (498)
T KOG4237|consen   71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI--------APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSL  142 (498)
T ss_pred             EEEeccCCcccCChhhccchhhhceecccccchhhc--------ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHH
Confidence            478899999999999999999999999999999833        3667777766444455555999999988 6 78999


Q ss_pred             eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCC------------cccCccccC
Q 006695           80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINL------------TCVPSSVQN  145 (635)
Q Consensus        80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l------------~~~~~~i~~  145 (635)
                      +.|.+.-|++.-++ +.+..+++|..|.+.+|.+..... .|..+.+++.+.+..|...            ...|..++.
T Consensus       143 qrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  143 QRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             HHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            99999999998665 457889999999999998554333 4888889999988887522            122223333


Q ss_pred             CCCCCEEeecCCCCCCccCCCCCCCCCcEE---ecCCCCCCCccC----cccCCcceEEeccccccccC-cccccCCCcc
Q 006695          146 FNHLSMLCFEGCKSLRSFPSNLHFMSPIKI---DFSSCFNLTEFP----QISGNITDLILSETAIQEVP-SSIECLTNLE  217 (635)
Q Consensus       146 l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L---~l~~c~~l~~~p----~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~  217 (635)
                      ........+.+. .+..++..-..-+++.+   -.+.|......|    ..+++|++|+|++|+|+.|. .+|.++..++
T Consensus       223 arc~~p~rl~~~-Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  223 ARCVSPYRLYYK-RINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             ceecchHHHHHH-HhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence            333333333221 12222211111111111   122232222233    23478999999999999985 5599999999


Q ss_pred             EEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc------ccCchhcccccchhhc
Q 006695          218 KLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT------ELPSSFANLEGLKDLY  291 (635)
Q Consensus       218 ~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~------~lp~~~~~l~~L~~l~  291 (635)
                      .|.|..|++...-...|.++..|++|+|++|+++...|..|..+.+|.+|++-.|.+.      -+-+|+..-.....--
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~  381 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPR  381 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCC
Confidence            9999999988777788899999999999999999999999999999999999887654      1112221111000000


Q ss_pred             -cCCCCccEEEcCCCCCCcc----ccc---------ccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccC
Q 006695          292 -IGGSSLRQLNLSRNDSESL----PAS---------ITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIP  356 (635)
Q Consensus       292 -~~~~~L~~L~Ls~n~~~~l----p~~---------l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~  356 (635)
                       .+-..++.+.++...+...    |+.         =..++-+.+..=..|+.++.+|. .|..-.+|++.+|.. +.+|
T Consensus       382 Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~-~~vp  460 (498)
T KOG4237|consen  382 CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAI-TSVP  460 (498)
T ss_pred             CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchh-cccC
Confidence             0113455666666553322    111         12344455544445677778876 456777888888864 4455


Q ss_pred             ccccCccccchhhhhhhhhccc
Q 006695          357 EILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       357 ~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      ..  .+.+| .+++++|++...
T Consensus       461 ~~--~~~~l-~~dls~n~i~~L  479 (498)
T KOG4237|consen  461 DE--LLRSL-LLDLSNNRISSL  479 (498)
T ss_pred             HH--HHhhh-hcccccCceehh
Confidence            54  55667 788888877544

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.59  E-value=2.2e-17  Score=164.67  Aligned_cols=269  Identities=17%  Similarity=0.184  Sum_probs=171.1

Q ss_pred             CCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCC
Q 006695           52 YLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLE  126 (635)
Q Consensus        52 ~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~  126 (635)
                      .+|.+...++++.|.+++||+. | .+++|+.|||++|+|+.| |+.++.+++|..|-+.+|..++.+|  .|+++..|+
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ  143 (498)
T ss_pred             cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence            3566788899999999999987 6 789999999999999987 6778999998888888755567777  399999999


Q ss_pred             EEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCC-CC-CCCCCcEEecCCCCCCCc------------cCcccC-
Q 006695          127 RTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS-NL-HFMSPIKIDFSSCFNLTE------------FPQISG-  191 (635)
Q Consensus       127 ~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~l~~c~~l~~------------~p~~~~-  191 (635)
                      .|.+.-|.........+..+++|..|.+.+|. +..++. .+ .+.+++.+.+..+..+-.            .|...+ 
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence            99998887777777788999999999998854 444444 22 666777776655432111            110000 


Q ss_pred             --CcceEEeccccccccCcc-c-ccCCCccEEEeecccccccch-hcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCE
Q 006695          192 --NITDLILSETAIQEVPSS-I-ECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCSKLERFPEILEKMESVKC  266 (635)
Q Consensus       192 --~L~~L~L~~n~i~~lp~~-~-~~l~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~  266 (635)
                        -.....+.+.++..+++. + ..+..+..=-.+.|......| ..|..+++|+.|+|++|.+...-+.+|.+...+++
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence              111112223333333221 1 111111111112232223323 23566777777777777766666667777777777


Q ss_pred             EEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCC
Q 006695          267 ISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       267 L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~  330 (635)
                      |.|..|+|..+...         .+.++..|+.|+|.+|+++.+ |..|..+.+|.+|+|-.|+.
T Consensus       303 L~L~~N~l~~v~~~---------~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSG---------MFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             hhcCcchHHHHHHH---------hhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            77777776655432         244556677777777776655 34466666777776666554

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.58  E-value=3.9e-17  Score=145.33  Aligned_cols=170  Identities=22%  Similarity=0.324  Sum_probs=101.3

Q ss_pred             CCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCC
Q 006695           68 KALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFN  147 (635)
Q Consensus        68 ~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~  147 (635)
                      ..+|..|++.+.+.|.|++|+++.+|..+..+.+|+.|++.+|++....+.++.+++|+.|++.-| .+..+|..|+.++
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p  102 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFP  102 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCc
Confidence            455666777777778888888887777777777777777777764443335666666666666544 3444455555555


Q ss_pred             CCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeeccccc
Q 006695          148 HLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRL  227 (635)
Q Consensus       148 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~  227 (635)
                      .|+.|++..                                                                   |++.
T Consensus       103 ~levldlty-------------------------------------------------------------------nnl~  115 (264)
T KOG0617|consen  103 ALEVLDLTY-------------------------------------------------------------------NNLN  115 (264)
T ss_pred             hhhhhhccc-------------------------------------------------------------------cccc
Confidence            555555544                                                                   3332


Q ss_pred             c-cchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCC
Q 006695          228 K-RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND  306 (635)
Q Consensus       228 ~-~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~  306 (635)
                      + .+|..|..+..|+.|+|++|. .+.+|...+++++|+.|.+.+|.+-++|..++.+          +.|++|.+.+|+
T Consensus       116 e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~l----------t~lrelhiqgnr  184 (264)
T KOG0617|consen  116 ENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDL----------TRLRELHIQGNR  184 (264)
T ss_pred             cccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHH----------HHHHHHhcccce
Confidence            2 344444455555555555533 3445555566666666666666666666655433          556666666666


Q ss_pred             CCcccccccC
Q 006695          307 SESLPASITQ  316 (635)
Q Consensus       307 ~~~lp~~l~~  316 (635)
                      ++.+|..+++
T Consensus       185 l~vlppel~~  194 (264)
T KOG0617|consen  185 LTVLPPELAN  194 (264)
T ss_pred             eeecChhhhh
Confidence            6666655444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.54  E-value=8.8e-16  Score=159.85  Aligned_cols=235  Identities=16%  Similarity=0.131  Sum_probs=105.6

Q ss_pred             CCCceEEEcCCCCCc-----cccccCCCCCCCcEEEccCCCCCCC------CC-CCCCCCCCCEEeecCCCCCcccCccc
Q 006695           76 PENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQYLIR------MP-DLSETPNLERTNLKNCINLTCVPSSV  143 (635)
Q Consensus        76 l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~n~~~~~------~p-~l~~l~~L~~L~L~~n~~l~~~~~~i  143 (635)
                      +.+|++|+++++.++     .++..+...++|+.|+++++.+...      ++ .+..+++|+.|++++|......+..+
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            455777777777663     3444555666677777766654310      00 13345555555555554433333333


Q ss_pred             cCCCC---CCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCC-CccCcccCCcceEEecccccc-----ccCcccccCC
Q 006695          144 QNFNH---LSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNL-TEFPQISGNITDLILSETAIQ-----EVPSSIECLT  214 (635)
Q Consensus       144 ~~l~~---L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l-~~~p~~~~~L~~L~L~~n~i~-----~lp~~~~~l~  214 (635)
                      ..+.+   |+.|++++|+....-.                ..+ ..++...++|+.|++++|.++     .++..+..++
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~----------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  165 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGL----------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR  165 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHH----------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence            22222   4444444433110000                000 001111145666666666555     2233344555


Q ss_pred             CccEEEeecccccc----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccC-chhcccc
Q 006695          215 NLEKLYINRCMRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELP-SSFANLE  285 (635)
Q Consensus       215 ~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~  285 (635)
                      +|++|++++|.+.+    .++..+..+++|+.|++++|.+.+.    +...+..+++|+.|++++|.++... ..+..  
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~--  243 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALAS--  243 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHH--
Confidence            56666666655542    1223334445566666666554322    2233444555666666555554310 00000  


Q ss_pred             cchhhccCCCCccEEEcCCCCCC-----cccccccCCCCccEEeccCCCCC
Q 006695          286 GLKDLYIGGSSLRQLNLSRNDSE-----SLPASITQLSQLRSLHLKDCSML  331 (635)
Q Consensus       286 ~L~~l~~~~~~L~~L~Ls~n~~~-----~lp~~l~~l~~L~~L~L~~n~~l  331 (635)
                         ......+.|++|++++|.++     .+...+..+++|+++++++|++.
T Consensus       244 ---~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         244 ---ALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             ---HHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence               00011245555555555543     22233344455555555555444

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=8.1e-16  Score=160.15  Aligned_cols=270  Identities=18%  Similarity=0.145  Sum_probs=133.6

Q ss_pred             EEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCC----CC-CCCCCCCCCEEeecCCCCC------cccCccccCCCC
Q 006695           82 LNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIR----MP-DLSETPNLERTNLKNCINL------TCVPSSVQNFNH  148 (635)
Q Consensus        82 L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~----~p-~l~~l~~L~~L~L~~n~~l------~~~~~~i~~l~~  148 (635)
                      |+|..+.++  .....+..+.+|+.|+++++.+...    ++ .+...++|++|+++++...      ..++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            444444443  1222234455577777777664321    22 2445566777777665433      122334555667


Q ss_pred             CCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccc-----cCcccccC-CCccEEEee
Q 006695          149 LSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQE-----VPSSIECL-TNLEKLYIN  222 (635)
Q Consensus       149 L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~-----lp~~~~~l-~~L~~L~L~  222 (635)
                      |+.|++++|......+..+                ..+... ++|++|++++|.++.     +...+..+ ++|+.|+++
T Consensus        83 L~~L~l~~~~~~~~~~~~~----------------~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~  145 (319)
T cd00116          83 LQELDLSDNALGPDGCGVL----------------ESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG  145 (319)
T ss_pred             eeEEEccCCCCChhHHHHH----------------HHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC
Confidence            7777776655432211111                011111 234555555554441     22334445 667777777


Q ss_pred             cccccc----cchhcccCCCCCcEEecCCCCCCC----cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695          223 RCMRLK----RLSTSICKLKSLHVLVLDDCSKLE----RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG  294 (635)
Q Consensus       223 ~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~  294 (635)
                      +|.+.+    .++..+..+++|++|++++|.+.+    .++..+..+++|+.|++++|.++....     ..+...+..+
T Consensus       146 ~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~-----~~l~~~~~~~  220 (319)
T cd00116         146 RNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGA-----SALAETLASL  220 (319)
T ss_pred             CCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHH-----HHHHHHhccc
Confidence            776652    233345556667777777766553    223344455677777777776653211     0111223345


Q ss_pred             CCccEEEcCCCCCCccc-ccc-----cCCCCccEEeccCCCCCC--------cCCCCCCccceecccccccccc----cC
Q 006695          295 SSLRQLNLSRNDSESLP-ASI-----TQLSQLRSLHLKDCSMLS--------SLPELPQSLELLDAENCKQLQF----IP  356 (635)
Q Consensus       295 ~~L~~L~Ls~n~~~~lp-~~l-----~~l~~L~~L~L~~n~~l~--------~lp~l~~sL~~L~l~~c~~l~~----~~  356 (635)
                      ++|++|++++|.++... ..+     ...+.|++|++++|.+..        .++.. ++|+++++++|.....    +.
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~-~~L~~l~l~~N~l~~~~~~~~~  299 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEK-ESLLELDLRGNKFGEEGAQLLA  299 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcC-CCccEEECCCCCCcHHHHHHHH
Confidence            66777777777655311 111     123567777777766541        11212 5677777777655422    22


Q ss_pred             ccccCc-cccchhhhhhhh
Q 006695          357 EILSGL-EEVDASVLEKAT  374 (635)
Q Consensus       357 ~~~~~L-~~L~~l~L~~n~  374 (635)
                      ..+... ..|+.+++.+|+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         300 ESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             HHHhhcCCchhhcccCCCC
Confidence            223333 445555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.53  E-value=1.6e-16  Score=141.47  Aligned_cols=175  Identities=29%  Similarity=0.416  Sum_probs=134.2

Q ss_pred             CCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcce
Q 006695          116 MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITD  195 (635)
Q Consensus       116 ~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~  195 (635)
                      +|.+-.+.+++.|.|++| .+..+|..+..+.+|+.|++.+                                       
T Consensus        26 ~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~n---------------------------------------   65 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSN---------------------------------------   65 (264)
T ss_pred             cccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhccc---------------------------------------
Confidence            344555666666667766 4455555665555555554433                                       


Q ss_pred             EEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC-cchhhhcCCCCCCEEEecCCCc
Q 006695          196 LILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE-RFPEILEKMESVKCISLERTAI  274 (635)
Q Consensus       196 L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l  274 (635)
                           |.|+++|.++..+++|+.|++.-|++ ..+|..|+.++.|+.|||..|++.+ .+|..|..|+.|+.|++++|.+
T Consensus        66 -----nqie~lp~~issl~klr~lnvgmnrl-~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf  139 (264)
T KOG0617|consen   66 -----NQIEELPTSISSLPKLRILNVGMNRL-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF  139 (264)
T ss_pred             -----chhhhcChhhhhchhhhheecchhhh-hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc
Confidence                 44566677777778888888777654 5788999999999999999998876 5888899999999999999999


Q ss_pred             cccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceecccccc
Q 006695          275 TELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCK  350 (635)
Q Consensus       275 ~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~  350 (635)
                      .-+|..++.          +++|+.|.+..|.+-++|..++.++.|++|.+.+|++. .+   |+.|-.|++.++.
T Consensus       140 e~lp~dvg~----------lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~-vl---ppel~~l~l~~~k  201 (264)
T KOG0617|consen  140 EILPPDVGK----------LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLT-VL---PPELANLDLVGNK  201 (264)
T ss_pred             ccCChhhhh----------hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceee-ec---ChhhhhhhhhhhH
Confidence            999988755          58999999999999999999999999999999997553 33   3455666666654

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.06  E-value=1e-11  Score=129.84  Aligned_cols=212  Identities=19%  Similarity=0.234  Sum_probs=125.0

Q ss_pred             EeecCCCCCCCCCCC-C--CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           59 YLHWHEYPSKALPFD-F--EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        59 ~L~l~~~~l~~lp~~-~--~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      .|.+++-.++.+|.. +  .+..-+..|++.|++..+|..+..+..|+.+.|++|.+-...+.+.++..|+.|+|+.| .
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-q  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-Q  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-h
Confidence            345566666777755 2  45556677778888888877777777777777777765444334555666666666554 2


Q ss_pred             CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCC
Q 006695          136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTN  215 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~  215 (635)
                      +..+|..+..+                                             -|+.|.+++|+++.+|..++.+..
T Consensus       133 lS~lp~~lC~l---------------------------------------------pLkvli~sNNkl~~lp~~ig~~~t  167 (722)
T KOG0532|consen  133 LSHLPDGLCDL---------------------------------------------PLKVLIVSNNKLTSLPEEIGLLPT  167 (722)
T ss_pred             hhcCChhhhcC---------------------------------------------cceeEEEecCccccCCcccccchh
Confidence            22333322222                                             245555566666666666666666


Q ss_pred             ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695          216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS  295 (635)
Q Consensus       216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~  295 (635)
                      |..|+.+.|.+. .+|..++++.+|+.|.+..|.... +|+.+..+ .|..||++.|++..||-.|          ..+.
T Consensus       168 l~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~L-pLi~lDfScNkis~iPv~f----------r~m~  234 (722)
T KOG0532|consen  168 LAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSL-PLIRLDFSCNKISYLPVDF----------RKMR  234 (722)
T ss_pred             HHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCC-ceeeeecccCceeecchhh----------hhhh
Confidence            666666666543 445556666666666666654433 44444433 3666666666666666554          3345


Q ss_pred             CccEEEcCCCCCCcccccc---cCCCCccEEeccCCC
Q 006695          296 SLRQLNLSRNDSESLPASI---TQLSQLRSLHLKDCS  329 (635)
Q Consensus       296 ~L~~L~Ls~n~~~~lp~~l---~~l~~L~~L~L~~n~  329 (635)
                      .|++|-|.+|.+.+-|+.|   +...--++|+..-|.
T Consensus       235 ~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  235 HLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            6666666666666666543   333345666666663

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.04  E-value=8.1e-11  Score=114.11  Aligned_cols=128  Identities=23%  Similarity=0.267  Sum_probs=101.5

Q ss_pred             CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695          191 GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE  270 (635)
Q Consensus       191 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~  270 (635)
                      ..|++|+|++|.|+.+..++.-+++++.|++++|.+...-  .+..+++|+.|||++|.+. .+..+-..+.+.+.|.|+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehh
Confidence            4688999999999999999999999999999999887543  3677899999999986543 344555667888899999


Q ss_pred             CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCC
Q 006695          271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLS  332 (635)
Q Consensus       271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~  332 (635)
                      +|.|.++..           ...+-+|..||+++|++..+..  +|++++-|++|.|.+|++.+
T Consensus       361 ~N~iE~LSG-----------L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  361 QNKIETLSG-----------LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhHhhhhh-----------hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            998876642           2445788999999999887753  58888888888888877654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.00  E-value=3.2e-10  Score=121.80  Aligned_cols=178  Identities=24%  Similarity=0.286  Sum_probs=91.5

Q ss_pred             CCceEEEcCCCCCccccccCCCCC-CCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695           77 ENLVKLNLPYSKVVQIWEGKKRAF-KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE  155 (635)
Q Consensus        77 ~~L~~L~L~~n~l~~l~~~~~~l~-~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~  155 (635)
                      +.++.|++.+|.+..++.....+. +|+.|++++|++......+..+++|+.|++++| .+..+|...+.++.|+.|+++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L~ls  194 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNLDLS  194 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhheecc
Confidence            444444444444444444444442 444444444442221123444444444444444 233333333344444444444


Q ss_pred             CCCCCCccCCCC-CCCCCcEEecCCCCCCCccC--cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchh
Q 006695          156 GCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFP--QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST  232 (635)
Q Consensus       156 ~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p--~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~  232 (635)
                      +| .+..+|..+ ....|+++.++++..+....  ....++..+.+.+|.+..++..++.++.|+.|++++|.+....+ 
T Consensus       195 ~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         195 GN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             CC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-
Confidence            42 233344333 22224444444432221111  12245556666777777777777888888888888877654433 


Q ss_pred             cccCCCCCcEEecCCCCCCCcchhhh
Q 006695          233 SICKLKSLHVLVLDDCSKLERFPEIL  258 (635)
Q Consensus       233 ~~~~l~~L~~L~Ls~n~~~~~~~~~l  258 (635)
                       ++.+.+|+.|+++++.+....+...
T Consensus       273 -~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         273 -LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             -ccccCccCEEeccCccccccchhhh
Confidence             7778888888888877776655543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=6e-10  Score=119.69  Aligned_cols=194  Identities=21%  Similarity=0.259  Sum_probs=153.7

Q ss_pred             EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCC-CCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695           81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETP-NLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS  159 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~-~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~  159 (635)
                      .+++..+.+..-...+..++.++.|++.+|.+....+....+. +|+.|++++| ....+|..++.+++|+.|++++|+ 
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-  174 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-  174 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCch-
Confidence            6888888886555666777889999999998555444455563 9999999998 556666778999999999998865 


Q ss_pred             CCccCCCC-CCCCCcEEecCCCCCCCccCcc---cCCcceEEeccccccccCcccccCCCccEEEeecccccccchhccc
Q 006695          160 LRSFPSNL-HFMSPIKIDFSSCFNLTEFPQI---SGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC  235 (635)
Q Consensus       160 l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~---~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~  235 (635)
                      +..+|... ..+.|+.|++++ +.+..+|..   ...|++|.+++|.+..++..+..+.++..|.+.+|++.. ++..++
T Consensus       175 l~~l~~~~~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~  252 (394)
T COG4886         175 LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESIG  252 (394)
T ss_pred             hhhhhhhhhhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchhc
Confidence            66666666 889999999999 467777763   355999999999888888888999999999988877543 366778


Q ss_pred             CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCch
Q 006695          236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS  280 (635)
Q Consensus       236 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~  280 (635)
                      .+++|+.|++++|.+...-.  ++.+.+|+.|++++|.+..++..
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            88899999999987765444  88899999999999998876543

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=1.4e-10  Score=118.15  Aligned_cols=211  Identities=18%  Similarity=0.190  Sum_probs=129.4

Q ss_pred             CCCCCCcEEEccCCCCCCCCC---CCCCCCCCCEEeecCCCCC--cccCccccCCCCCCEEeecCCCCCCccCCCCCCCC
Q 006695           97 KRAFKLKYVDIHNSQYLIRMP---DLSETPNLERTNLKNCINL--TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMS  171 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~L~L~~n~~l--~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~  171 (635)
                      +++.+|+.+.|.++... ..+   ....+++++.|+|++|-..  ..+-.....+++|+.|+++.|+..--.....    
T Consensus       118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~----  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT----  192 (505)
T ss_pred             hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc----
Confidence            67888999999888633 333   3667899999999987322  2233446788899999998876332211111    


Q ss_pred             CcEEecCCCCCCCccCcccCCcceEEecccccc--ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695          172 PIKIDFSSCFNLTEFPQISGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS  249 (635)
Q Consensus       172 L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~  249 (635)
                                     -..+..|+.|.|+.|+++  ++-.....+++|+.|+|..|.....-.....-+..|+.|+|++|+
T Consensus       193 ---------------~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  193 ---------------TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             ---------------hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence                           012334555555555555  232335567778888888775433333334456778888888877


Q ss_pred             CCCcc-hhhhcCCCCCCEEEecCCCcccc--CchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEe
Q 006695          250 KLERF-PEILEKMESVKCISLERTAITEL--PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLH  324 (635)
Q Consensus       250 ~~~~~-~~~l~~l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~  324 (635)
                      +...- -...+.++.|+.|+++.|.|.++  |+. ..+    +-...+++|+.|+++.|++..++.  .+..+++|+.|.
T Consensus       258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-~s~----~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV-ESL----DKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             ccccccccccccccchhhhhccccCcchhcCCCc-cch----hhhcccccceeeecccCccccccccchhhccchhhhhh
Confidence            65432 13456778888888888887754  221 000    011335778888888888776663  355666777777


Q ss_pred             ccCCCCCC
Q 006695          325 LKDCSMLS  332 (635)
Q Consensus       325 L~~n~~l~  332 (635)
                      +..|.+.+
T Consensus       333 ~~~n~ln~  340 (505)
T KOG3207|consen  333 ITLNYLNK  340 (505)
T ss_pred             cccccccc
Confidence            66655543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.92  E-value=7.6e-10  Score=127.72  Aligned_cols=300  Identities=24%  Similarity=0.290  Sum_probs=178.1

Q ss_pred             CCCcEEEeecCC--CCCCcccceeeecCCc-ccCCCccceEeecCCC-CCCCCCCCC-CCCCceEEEcCCCCCccccccC
Q 006695           22 PNLRFLKFYMPE--HNGVPIMISKVHLDQG-LEYLPNELRYLHWHEY-PSKALPFDF-EPENLVKLNLPYSKVVQIWEGK   96 (635)
Q Consensus        22 ~~L~~L~L~~n~--l~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~-~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~   96 (635)
                      ++|++|-+..|.  +.         .++.+ +..+|. |++|++++| .+..+|..+ .+-+|+.|+++++.++.+|.++
T Consensus       545 ~~L~tLll~~n~~~l~---------~is~~ff~~m~~-LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l  614 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLL---------EISGEFFRSLPL-LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL  614 (889)
T ss_pred             CccceEEEeecchhhh---------hcCHHHHhhCcc-eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence            368888888764  22         34433 445555 999999865 468889887 6889999999999999999999


Q ss_pred             CCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCC--CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCc
Q 006695           97 KRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCI--NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPI  173 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~--~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~  173 (635)
                      +++..|.+|++..+.....+|. ...+++|++|.+..-.  .....-..+..+.+|+.+....... ..+-....+..|.
T Consensus       615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLR  693 (889)
T ss_pred             HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence            9999999999998887766776 4449999999887642  1112223345666666666643322 1111111222222


Q ss_pred             ----EEecCCCCCCCccC--cccCCcceEEeccccccccCc-c-----ccc-CCCccEEEeecccccccchhcccCCCCC
Q 006695          174 ----KIDFSSCFNLTEFP--QISGNITDLILSETAIQEVPS-S-----IEC-LTNLEKLYINRCMRLKRLSTSICKLKSL  240 (635)
Q Consensus       174 ----~L~l~~c~~l~~~p--~~~~~L~~L~L~~n~i~~lp~-~-----~~~-l~~L~~L~L~~n~~~~~lp~~~~~l~~L  240 (635)
                          .+.+.+|..-+..+  ..+.+|+.|.+.++.+.++.. +     ... ++++..+...+|.....+ ......++|
T Consensus       694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l-~~~~f~~~L  772 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDL-TWLLFAPHL  772 (889)
T ss_pred             HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccccc-chhhccCcc
Confidence                22222332222222  334788888888888765432 1     111 334555555555544332 222357899


Q ss_pred             cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCc
Q 006695          241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL  320 (635)
Q Consensus       241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L  320 (635)
                      +.|.+..|...+.+......+..+..+.+..+.+..++. +.++       ..++++..+.++            . +.|
T Consensus       773 ~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~-~~~l-------~~l~~i~~~~l~------------~-~~l  831 (889)
T KOG4658|consen  773 TSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRM-LCSL-------GGLPQLYWLPLS------------F-LKL  831 (889)
T ss_pred             cEEEEecccccccCCCHHHHhhhcccEEeccccccccee-eecC-------CCCceeEecccC------------c-cch
Confidence            999999999998888777777777766555554443320 0000       111222222211            1 126


Q ss_pred             cEEeccCCCCCCcCCCCCCccceeccccc-ccccccCcc
Q 006695          321 RSLHLKDCSMLSSLPELPQSLELLDAENC-KQLQFIPEI  358 (635)
Q Consensus       321 ~~L~L~~n~~l~~lp~l~~sL~~L~l~~c-~~l~~~~~~  358 (635)
                      ..+.+..|+.++.+|.    +..+.+.+| ..+...|+.
T Consensus       832 ~~~~ve~~p~l~~~P~----~~~~~i~~~~~~~~~~~~~  866 (889)
T KOG4658|consen  832 EELIVEECPKLGKLPL----LSTLTIVGCEEKLKEYPDG  866 (889)
T ss_pred             hheehhcCcccccCcc----ccccceeccccceeecCCc
Confidence            6777777777776653    344555554 555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.91  E-value=5.6e-10  Score=128.81  Aligned_cols=123  Identities=20%  Similarity=0.260  Sum_probs=81.5

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCC--Ccccccc-CCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeec
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSK--VVQIWEG-KKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLK  131 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~--l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~  131 (635)
                      ..|...+.++.+..++.....++|++|-+..|.  +..++.. +..++.|++|||++|.-...+|+ ++.+-+|++|+|+
T Consensus       524 ~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~  603 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLS  603 (889)
T ss_pred             heeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccccc
Confidence            467777777777777776655577777777765  4555433 56677777777777766667774 6777777777777


Q ss_pred             CCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCC
Q 006695          132 NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSS  179 (635)
Q Consensus       132 ~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~  179 (635)
                      ++ ....+|.+++++++|.+|++..+..+..+|... .+.+|++|.+..
T Consensus       604 ~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  604 DT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             CC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence            75 455677777777777777777666555554444 366666666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.91  E-value=1.2e-09  Score=101.81  Aligned_cols=122  Identities=22%  Similarity=0.293  Sum_probs=39.9

Q ss_pred             CCccEEEeecccccccchhccc-CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhcc
Q 006695          214 TNLEKLYINRCMRLKRLSTSIC-KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI  292 (635)
Q Consensus       214 ~~L~~L~L~~n~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~  292 (635)
                      .++++|+|.+|.+...  +.++ .+.+|+.|++++|.+...  +.+..++.|++|++++|.|+.++..+.         .
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~---------~   85 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLD---------K   85 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHH---------H
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchH---------H
Confidence            3455555555554332  1222 345566666666555432  235556667777777777776653221         1


Q ss_pred             CCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcCCC-------CCCccceeccccc
Q 006695          293 GGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSLPE-------LPQSLELLDAENC  349 (635)
Q Consensus       293 ~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~lp~-------l~~sL~~L~l~~c  349 (635)
                      .+++|++|++++|++..+..  .++.+++|+.|+|.+|+.... +.       ..|+|+.||-...
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence            24667777777777655543  356777888888888777543 22       3467777776543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.85  E-value=7.3e-11  Score=123.61  Aligned_cols=212  Identities=17%  Similarity=0.205  Sum_probs=157.1

Q ss_pred             eecCCCcccccChhhhc-CCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCce
Q 006695            3 LDLSKITSIHLSPQAFA-NMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLV   80 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~   80 (635)
                      |.|++-++..++..++. .+..-...+++.|++.         .+|..+..+-. |..|.++.|.+..+|... .+..|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~---------elp~~~~~f~~-Le~liLy~n~~r~ip~~i~~L~~lt  124 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS---------ELPEEACAFVS-LESLILYHNCIRTIPEAICNLEALT  124 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc---------cCchHHHHHHH-HHHHHHHhccceecchhhhhhhHHH
Confidence            44555565566655554 4555667888888887         44555554433 888888999999999886 789999


Q ss_pred             EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695           81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL  160 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l  160 (635)
                      .|+|+.|++..+|..+..|+ |+.|-+++|++....++++.++.|..|+.+.| .+..+|..++.+.+|+.|++..|+ +
T Consensus       125 ~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn~-l  201 (722)
T KOG0532|consen  125 FLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRNH-L  201 (722)
T ss_pred             HhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhhh-h
Confidence            99999999999999988775 89999999986555557889999999999988 566778889999999999998865 3


Q ss_pred             CccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhccc---CC
Q 006695          161 RSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC---KL  237 (635)
Q Consensus       161 ~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~---~l  237 (635)
                      ..+|.....                     -.|..||++.|+|..||-.|.+|+.|++|-|.+|.+. ..|..++   ..
T Consensus       202 ~~lp~El~~---------------------LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkV  259 (722)
T KOG0532|consen  202 EDLPEELCS---------------------LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKV  259 (722)
T ss_pred             hhCCHHHhC---------------------CceeeeecccCceeecchhhhhhhhheeeeeccCCCC-CChHHHHhccce
Confidence            333332211                     1366788888899999999999999999999988764 3444332   23


Q ss_pred             CCCcEEecCCCC
Q 006695          238 KSLHVLVLDDCS  249 (635)
Q Consensus       238 ~~L~~L~Ls~n~  249 (635)
                      .=-++|+..-|.
T Consensus       260 HIFKyL~~qA~q  271 (722)
T KOG0532|consen  260 HIFKYLSTQACQ  271 (722)
T ss_pred             eeeeeecchhcc
Confidence            334667776663

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.84  E-value=3e-09  Score=99.20  Aligned_cols=90  Identities=23%  Similarity=0.291  Sum_probs=22.8

Q ss_pred             CCCCCCCCCCCCCceEEEcCCCCCccccccCC-CCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccc-
Q 006695           66 PSKALPFDFEPENLVKLNLPYSKVVQIWEGKK-RAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSV-  143 (635)
Q Consensus        66 ~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~-~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i-  143 (635)
                      .+...|...++.++++|+|.+|.|+.+ +.+. .+.+|+.|+|++|.+ +.++.+..+++|+.|++++|... .+...+ 
T Consensus         8 ~i~~~~~~~n~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I-~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~   84 (175)
T PF14580_consen    8 MIEQIAQYNNPVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQI-TKLEGLPGLPRLKTLDLSNNRIS-SISEGLD   84 (175)
T ss_dssp             -----------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHH
T ss_pred             ccccccccccccccccccccccccccc-cchhhhhcCCCEEECCCCCC-ccccCccChhhhhhcccCCCCCC-ccccchH
Confidence            344444444566778888888888776 3454 577888888888873 45666777788888888877443 333333 


Q ss_pred             cCCCCCCEEeecCCC
Q 006695          144 QNFNHLSMLCFEGCK  158 (635)
Q Consensus       144 ~~l~~L~~L~L~~~~  158 (635)
                      ..+++|+.|++++|+
T Consensus        85 ~~lp~L~~L~L~~N~   99 (175)
T PF14580_consen   85 KNLPNLQELYLSNNK   99 (175)
T ss_dssp             HH-TT--EEE-TTS-
T ss_pred             HhCCcCCEEECcCCc
Confidence            346677777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.78  E-value=1.4e-09  Score=111.03  Aligned_cols=204  Identities=13%  Similarity=0.131  Sum_probs=92.5

Q ss_pred             ceEeecCCCCCCCCCCC--C-CCCCceEEEcCCCCCccc---cccCCCCCCCcEEEccCCCCCCCCCC--CCCCCCCCEE
Q 006695           57 LRYLHWHEYPSKALPFD--F-EPENLVKLNLPYSKVVQI---WEGKKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERT  128 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~--~-~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L  128 (635)
                      ||...+++++....+..  . .+++++.|||++|-+...   -.-...+++|+.|+|+.|++..-...  -..++.|+.|
T Consensus       123 L~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L  202 (505)
T KOG3207|consen  123 LREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQL  202 (505)
T ss_pred             hhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheE
Confidence            55555555555554431  1 355555555555544422   12234555555555555554332221  1234445555


Q ss_pred             eecCCCCCc-ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccC-cccCCcceEEecccccccc
Q 006695          129 NLKNCINLT-CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFP-QISGNITDLILSETAIQEV  206 (635)
Q Consensus       129 ~L~~n~~l~-~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p-~~~~~L~~L~L~~n~i~~l  206 (635)
                      .|+.|.... .+......+++|+.|++..|..+..                     ...+ ..+..|++|+|++|.+...
T Consensus       203 ~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~---------------------~~~~~~i~~~L~~LdLs~N~li~~  261 (505)
T KOG3207|consen  203 VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI---------------------KATSTKILQTLQELDLSNNNLIDF  261 (505)
T ss_pred             EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce---------------------ecchhhhhhHHhhccccCCccccc
Confidence            555553321 1111223334444444444321110                     0111 2234566666666666655


Q ss_pred             C--cccccCCCccEEEeeccccccc-chhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcc
Q 006695          207 P--SSIECLTNLEKLYINRCMRLKR-LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFAN  283 (635)
Q Consensus       207 p--~~~~~l~~L~~L~L~~n~~~~~-lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~  283 (635)
                      +  ...+.++.|+.|+++.|.+... .|+.       .            .-+....+++|+.|++..|+|.+++. +.+
T Consensus       262 ~~~~~~~~l~~L~~Lnls~tgi~si~~~d~-------~------------s~~kt~~f~kL~~L~i~~N~I~~w~s-l~~  321 (505)
T KOG3207|consen  262 DQGYKVGTLPGLNQLNLSSTGIASIAEPDV-------E------------SLDKTHTFPKLEYLNISENNIRDWRS-LNH  321 (505)
T ss_pred             ccccccccccchhhhhccccCcchhcCCCc-------c------------chhhhcccccceeeecccCccccccc-cch
Confidence            5  2356666666666666544321 1110       0            00112345566666666666665543 111


Q ss_pred             cccchhhccCCCCccEEEcCCCCCC
Q 006695          284 LEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       284 l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                             +..+.+|+.|.+..|.+.
T Consensus       322 -------l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  322 -------LRTLENLKHLRITLNYLN  339 (505)
T ss_pred             -------hhccchhhhhhccccccc
Confidence                   123356666666666653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.74  E-value=2.4e-09  Score=104.08  Aligned_cols=194  Identities=14%  Similarity=0.088  Sum_probs=91.0

Q ss_pred             cceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCC-CC---CCCCCCCCCEEee
Q 006695           56 ELRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR-MP---DLSETPNLERTNL  130 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~-~p---~l~~l~~L~~L~L  130 (635)
                      +|+.+.++++.-+.+-... .-+.|+++...++.+...|.- -....+.  |.....-... -|   .......|++|+|
T Consensus       215 ~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l-~pe~~~~--D~~~~E~~t~~G~~~~~~dTWq~LtelDL  291 (490)
T KOG1259|consen  215 NLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSL-LPETILA--DPSGSEPSTSNGSALVSADTWQELTELDL  291 (490)
T ss_pred             hhheeeeeccchhheeceeecCchhheeeeecccccccccc-cchhhhc--CccCCCCCccCCceEEecchHhhhhhccc
Confidence            4777777777766665542 446677777776665543211 1111111  1111110000 00   1222345666666


Q ss_pred             cCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCc---cCcccCCcceEEeccccccccC
Q 006695          131 KNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTE---FPQISGNITDLILSETAIQEVP  207 (635)
Q Consensus       131 ~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~---~p~~~~~L~~L~L~~n~i~~lp  207 (635)
                      ++| ..+.+..++.-+++++.|+++.|... .+.....+.+|+.|+++++ .+..   ...-++|++.|.|++|.|+.+ 
T Consensus       292 S~N-~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-  367 (490)
T KOG1259|consen  292 SGN-LITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTLKLAQNKIETL-  367 (490)
T ss_pred             ccc-chhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccc-hhHhhhhhHhhhcCEeeeehhhhhHhhh-
Confidence            665 44555556666666666666665422 2222123333333333332 1111   112234555555555555544 


Q ss_pred             cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCc
Q 006695          208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS  279 (635)
Q Consensus       208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~  279 (635)
                      +.++.+-+|..||+++|++....                       -...++++|.|+.+.|.+|.+..+|+
T Consensus       368 SGL~KLYSLvnLDl~~N~Ie~ld-----------------------eV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  368 SGLRKLYSLVNLDLSSNQIEELD-----------------------EVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hhhHhhhhheeccccccchhhHH-----------------------HhcccccccHHHHHhhcCCCccccch
Confidence            23444444444444444432210                       11345566666666677776666654

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.64  E-value=3.4e-09  Score=105.44  Aligned_cols=244  Identities=16%  Similarity=0.160  Sum_probs=116.7

Q ss_pred             CCCCceEEEcCCCCCc-----cccccCCCCCCCcEEEccCCC---CCCCCC--------CCCCCCCCCEEeecCCCCCcc
Q 006695           75 EPENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQ---YLIRMP--------DLSETPNLERTNLKNCINLTC  138 (635)
Q Consensus        75 ~l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~n~---~~~~~p--------~l~~l~~L~~L~L~~n~~l~~  138 (635)
                      ....++.++|++|.+.     .+-..+...++|+..++++--   ....+|        .+-++++|++|+|++|..-..
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            4567888888888776     344556677788888887632   112223        244566777777777744332


Q ss_pred             cCcc----ccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-----cc
Q 006695          139 VPSS----VQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-----SS  209 (635)
Q Consensus       139 ~~~~----i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-----~~  209 (635)
                      -+..    +.....|++|.|.+|..-. .....--..|..|.  .    .......+.|+.+...+|++..-+     ..
T Consensus       108 g~~~l~~ll~s~~~L~eL~L~N~Glg~-~ag~~l~~al~~l~--~----~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~  180 (382)
T KOG1909|consen  108 GIRGLEELLSSCTDLEELYLNNCGLGP-EAGGRLGRALFELA--V----NKKAASKPKLRVFICGRNRLENGGATALAEA  180 (382)
T ss_pred             chHHHHHHHHhccCHHHHhhhcCCCCh-hHHHHHHHHHHHHH--H----HhccCCCcceEEEEeeccccccccHHHHHHH
Confidence            2222    3445666666665553111 10000000000000  0    000112245666666666655433     22


Q ss_pred             cccCCCccEEEeecccccc----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccC-ch
Q 006695          210 IECLTNLEKLYINRCMRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELP-SS  280 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~  280 (635)
                      +...+.|+.+.+..|.+..    .+-..+..+++|+.|||.+|.+...    +...+..+++|++|++++|.+..=- ..
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a  260 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIA  260 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHH
Confidence            4555666666666655432    1223445556666666666554432    2334445555666666655554210 00


Q ss_pred             hcccccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCCCC
Q 006695          281 FANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       281 ~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      +     ...+-...++|+.|.+.+|.++.     +-..+...+.|..|+|++|.+
T Consensus       261 ~-----~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  261 F-----VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             H-----HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            0     00111224555555555555431     222333455555555555443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.63  E-value=8.4e-09  Score=102.70  Aligned_cols=233  Identities=20%  Similarity=0.173  Sum_probs=151.7

Q ss_pred             ccceEeecCCCCCCCCC-----CCC-CCCCceEEEcCCCC---C-cccc-------ccCCCCCCCcEEEccCCCCCCCCC
Q 006695           55 NELRYLHWHEYPSKALP-----FDF-EPENLVKLNLPYSK---V-VQIW-------EGKKRAFKLKYVDIHNSQYLIRMP  117 (635)
Q Consensus        55 ~~L~~L~l~~~~l~~lp-----~~~-~l~~L~~L~L~~n~---l-~~l~-------~~~~~l~~L~~L~Ls~n~~~~~~p  117 (635)
                      +.++.++++||.+..=.     ..+ ..++|++.+++.--   + ..+|       +.+...++|++||||+|-+-...+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            46999999999874321     112 35688888887532   2 1344       345677899999999998764443


Q ss_pred             -C----CCCCCCCCEEeecCCCCCcc-------------cCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCC
Q 006695          118 -D----LSETPNLERTNLKNCINLTC-------------VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS  179 (635)
Q Consensus       118 -~----l~~l~~L~~L~L~~n~~l~~-------------~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~  179 (635)
                       .    ++.+.+|++|.|.+|..-..             ....++.-++|+++...+|+ +...+..             
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~-------------  175 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGAT-------------  175 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHH-------------
Confidence             2    67789999999999943221             11123344556666555433 1111110             


Q ss_pred             CCCCCccCcccCCcceEEeccccccc-----cCcccccCCCccEEEeeccccccc----chhcccCCCCCcEEecCCCCC
Q 006695          180 CFNLTEFPQISGNITDLILSETAIQE-----VPSSIECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSK  250 (635)
Q Consensus       180 c~~l~~~p~~~~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~  250 (635)
                        -+...-...+.|+.+.+..|.|..     +-..+.+++.|++|||++|.+...    +...+..+++|+.|++++|.+
T Consensus       176 --~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  176 --ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             --HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence              000011223578888888887752     345588999999999999987643    455677899999999999988


Q ss_pred             CCcchh----hh-cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          251 LERFPE----IL-EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       251 ~~~~~~----~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                      ...-..    .+ ...++|+.|.+.+|.|+.=...     .+...+...+.|+.|+|++|+++
T Consensus       254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~-----~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAAL-----ALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             ccccHHHHHHHHhccCCCCceeccCcchhHHHHHH-----HHHHHHhcchhhHHhcCCccccc
Confidence            764332    23 3478999999999999821100     01122344689999999999984

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.61  E-value=1.7e-07  Score=97.77  Aligned_cols=129  Identities=23%  Similarity=0.425  Sum_probs=66.7

Q ss_pred             CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      +++.|++++|.++.+|.   -..+|+.|.+++|..+..+|..+  .++|+.|++++|..+..+|.      +|+.|++.+
T Consensus        53 ~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~  121 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSLEIKG  121 (426)
T ss_pred             CCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceEEeCC
Confidence            34445555555555541   12245555555555555555433  24566666666654444443      355666665


Q ss_pred             CCc---cccCchhcccccchhhccCCCCccEEEcCCCC-C--CcccccccCCCCccEEeccCCCCCCcCCCCCCccceec
Q 006695          272 TAI---TELPSSFANLEGLKDLYIGGSSLRQLNLSRND-S--ESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLD  345 (635)
Q Consensus       272 n~l---~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~-~--~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~  345 (635)
                      +..   ..+|.                +|+.|.+.+++ .  ..+|.  .--++|++|++++|..+...+.+|.+|+.|+
T Consensus       122 n~~~~L~~LPs----------------sLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~  183 (426)
T PRK15386        122 SATDSIKNVPN----------------GLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLPESLQSIT  183 (426)
T ss_pred             CCCcccccCcc----------------hHhheecccccccccccccc--ccCCcccEEEecCCCcccCcccccccCcEEE
Confidence            543   33442                45556554332 1  11110  0115677777777776543334667777777


Q ss_pred             cccc
Q 006695          346 AENC  349 (635)
Q Consensus       346 l~~c  349 (635)
                      ++.+
T Consensus       184 ls~n  187 (426)
T PRK15386        184 LHIE  187 (426)
T ss_pred             eccc
Confidence            7654

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=1.1e-07  Score=107.48  Aligned_cols=105  Identities=27%  Similarity=0.319  Sum_probs=76.7

Q ss_pred             CcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccCCCCccEEEcCCCCCC-cccccccCC
Q 006695          240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE-SLPASITQL  317 (635)
Q Consensus       240 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~-~lp~~l~~l  317 (635)
                      ++.|+|++|.+.+.+|..+..+++|+.|+|++|.++ .+|..+          ..+++|+.|+|++|++. .+|..++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~----------~~l~~L~~LdLs~N~lsg~iP~~l~~L  489 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL----------GSITSLEVLDLSYNSFNGSIPESLGQL  489 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHH----------hCCCCCCEEECCCCCCCCCCchHHhcC
Confidence            677788888777778888888888888888888776 566554          34577788888888864 677778888


Q ss_pred             CCccEEeccCCCCCCcCCCCC----Cccceecccccccccc
Q 006695          318 SQLRSLHLKDCSMLSSLPELP----QSLELLDAENCKQLQF  354 (635)
Q Consensus       318 ~~L~~L~L~~n~~l~~lp~l~----~sL~~L~l~~c~~l~~  354 (635)
                      ++|+.|+|++|++.+.+|..+    .++..+++.+|+.+-.
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~  530 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG  530 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence            888888888888877777632    3455677777765543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.56  E-value=1.9e-07  Score=97.50  Aligned_cols=160  Identities=21%  Similarity=0.369  Sum_probs=109.2

Q ss_pred             cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC-CccccCchhcccccch
Q 006695          210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT-AITELPSSFANLEGLK  288 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~  288 (635)
                      +..+.+++.|++++|. +..+|.   -..+|++|.+++|..+..+|+.+.  ++|+.|++++| .+..+|.         
T Consensus        48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~---------  112 (426)
T PRK15386         48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE---------  112 (426)
T ss_pred             HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc---------
Confidence            4457899999999995 455562   234799999999999888887653  68999999998 7777764         


Q ss_pred             hhccCCCCccEEEcCCCC---CCcccccccCCCCccEEeccCCCCC--CcCC-CCCCccceecccccccccccCccccCc
Q 006695          289 DLYIGGSSLRQLNLSRND---SESLPASITQLSQLRSLHLKDCSML--SSLP-ELPQSLELLDAENCKQLQFIPEILSGL  362 (635)
Q Consensus       289 ~l~~~~~~L~~L~Ls~n~---~~~lp~~l~~l~~L~~L~L~~n~~l--~~lp-~l~~sL~~L~l~~c~~l~~~~~~~~~L  362 (635)
                             +|+.|+++++.   +..+|.      +|+.|.+.+++..  ..+| .+|++|++|++++|.... +|..+.  
T Consensus       113 -------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--  176 (426)
T PRK15386        113 -------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--  176 (426)
T ss_pred             -------ccceEEeCCCCCcccccCcc------hHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--
Confidence                   57788888776   455664      5667777544322  3344 367899999999998664 333222  


Q ss_pred             cccchhhhhhhhhc---ccccccCCccceEEEcCCcccchhh
Q 006695          363 EEVDASVLEKATFL---NSAFTLNSACVKFVFSNCLKLNEKA  401 (635)
Q Consensus       363 ~~L~~l~L~~n~~~---~~~~~l~~~~~~l~~~nC~~L~~~~  401 (635)
                      .+|+.|.++.+...   -....++... .+.|.+|.+++...
T Consensus       177 ~SLk~L~ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~~~  217 (426)
T PRK15386        177 ESLQSITLHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSPDV  217 (426)
T ss_pred             ccCcEEEecccccccccCccccccccc-EechhhhcccCHHH
Confidence            35555666554311   1122344444 88999998887643

>PLN03150 hypothetical protein; Provisional

Probab=98.55  E-value=1.4e-07  Score=106.71  Aligned_cols=112  Identities=24%  Similarity=0.318  Sum_probs=95.7

Q ss_pred             CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccC
Q 006695          215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIG  293 (635)
Q Consensus       215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~  293 (635)
                      .++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|+++ .+|..+          ..
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l----------~~  488 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL----------GQ  488 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH----------hc
Confidence            4788999999999999999999999999999999999999999999999999999999998 677665          44


Q ss_pred             CCCccEEEcCCCCCC-cccccccC-CCCccEEeccCCCCCCcCCC
Q 006695          294 GSSLRQLNLSRNDSE-SLPASITQ-LSQLRSLHLKDCSMLSSLPE  336 (635)
Q Consensus       294 ~~~L~~L~Ls~n~~~-~lp~~l~~-l~~L~~L~L~~n~~l~~lp~  336 (635)
                      +++|+.|+|++|.+. .+|..+.. +.++..+++.+|+.+...|.
T Consensus       489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             CCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            588999999999974 78887765 35778999999987776654

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=1.7e-08  Score=108.89  Aligned_cols=98  Identities=17%  Similarity=0.197  Sum_probs=48.1

Q ss_pred             ceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           57 LRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      |..|++.+|.++.+.... .+.+|++|++++|.|+++ .++..++.|+.|++++|. +..+..+..+++|+.+++++|..
T Consensus        97 l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i  174 (414)
T KOG0531|consen   97 LEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYNRI  174 (414)
T ss_pred             eeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccCCccchhhhcccCCcchh
Confidence            555555555555555422 455555555555555555 334445555555555554 33344444455555555555533


Q ss_pred             CcccC-ccccCCCCCCEEeecCC
Q 006695          136 LTCVP-SSVQNFNHLSMLCFEGC  157 (635)
Q Consensus       136 l~~~~-~~i~~l~~L~~L~L~~~  157 (635)
                      ...-+ . ...+.+++.+.+.+|
T Consensus       175 ~~ie~~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  175 VDIENDE-LSELISLEELDLGGN  196 (414)
T ss_pred             hhhhhhh-hhhccchHHHhccCC
Confidence            22211 1 344445555555443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.46  E-value=1.9e-07  Score=71.44  Aligned_cols=58  Identities=28%  Similarity=0.348  Sum_probs=40.9

Q ss_pred             CcceEEeccccccccCc-ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695          192 NITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS  249 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~  249 (635)
                      +|++|++++|.++.+|. .|.++++|++|++++|.+....+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            56777777777777764 46777777777777777766666666777777777776664

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.45  E-value=2.4e-08  Score=107.77  Aligned_cols=238  Identities=20%  Similarity=0.184  Sum_probs=111.9

Q ss_pred             CCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           76 PENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        76 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      +..+..++++.|.+..+-..+..+++|+.|++.+|++ ..+.. +..+++|++|++++|.+...  ..+..++.|+.|++
T Consensus        71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNL  147 (414)
T ss_pred             hHhHHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheeccccccccc--cchhhccchhhhee
Confidence            3445555555555555434455556666666666653 23333 55566666666666533322  13444445555555


Q ss_pred             cCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhc
Q 006695          155 EGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTS  233 (635)
Q Consensus       155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~  233 (635)
                      .+|. +..+...-.                     +.+|+.+++++|.+..+... ...+.+|+.+.+.+|.+...-.  
T Consensus       148 ~~N~-i~~~~~~~~---------------------l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~--  203 (414)
T KOG0531|consen  148 SGNL-ISDISGLES---------------------LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEG--  203 (414)
T ss_pred             ccCc-chhccCCcc---------------------chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccc--
Confidence            5543 222221111                     23344444444444444332 3444555555555544432211  


Q ss_pred             ccCCCCCcEEecCCCCCCCcchhhhcCCC--CCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695          234 ICKLKSLHVLVLDDCSKLERFPEILEKME--SVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP  311 (635)
Q Consensus       234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~--~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp  311 (635)
                      +..+..+..+++..|.+...-+  +..+.  +|+.+++++|.+..++..+          ..+..+..|++..|++..+.
T Consensus       204 ~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~----------~~~~~l~~l~~~~n~~~~~~  271 (414)
T KOG0531|consen  204 LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGL----------ENLKNLPVLDLSSNRISNLE  271 (414)
T ss_pred             hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccc----------cccccccccchhhccccccc
Confidence            1122222223444433322111  11112  3666777777766654222          23456667777777665554


Q ss_pred             ccccCCCCccEEeccCCCCCCcC---C----CCCCccceeccccccccc
Q 006695          312 ASITQLSQLRSLHLKDCSMLSSL---P----ELPQSLELLDAENCKQLQ  353 (635)
Q Consensus       312 ~~l~~l~~L~~L~L~~n~~l~~l---p----~l~~sL~~L~l~~c~~l~  353 (635)
                       .+.....+..+....++.....   .    ...+.++.+.+.+++.-.
T Consensus       272 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  272 -GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRK  319 (414)
T ss_pred             -cccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccc
Confidence             3455556666666665544221   1    122456666666665544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.43  E-value=1.9e-07  Score=71.46  Aligned_cols=61  Identities=18%  Similarity=0.263  Sum_probs=40.3

Q ss_pred             CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCc
Q 006695          214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAI  274 (635)
Q Consensus       214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l  274 (635)
                      ++|++|++++|++....+..|.++++|++|++++|.+....+..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4567777777766655556666677777777776666655556666676677766666654

...

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=3.3e-09  Score=103.16  Aligned_cols=170  Identities=22%  Similarity=0.269  Sum_probs=108.3

Q ss_pred             CCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC---CCCCCcEE
Q 006695          101 KLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL---HFMSPIKI  175 (635)
Q Consensus       101 ~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~---~l~~L~~L  175 (635)
                      .|++|||+...+....-  -++.+.+|+.|.|.|+.....+...+..-.+|+.|+++.|..++......   .++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            47777877765442211  25667778888888877766666677777888888888887766544332   67778888


Q ss_pred             ecCCCCCCCcc-----CcccCCcceEEecccc----ccccCcccccCCCccEEEeeccccccc-chhcccCCCCCcEEec
Q 006695          176 DFSSCFNLTEF-----PQISGNITDLILSETA----IQEVPSSIECLTNLEKLYINRCMRLKR-LSTSICKLKSLHVLVL  245 (635)
Q Consensus       176 ~l~~c~~l~~~-----p~~~~~L~~L~L~~n~----i~~lp~~~~~l~~L~~L~L~~n~~~~~-lp~~~~~l~~L~~L~L  245 (635)
                      ++++|...+..     ..+.++|+.|+|+|+.    ...+..-...+++|..|||++|..+.. .-..|.+++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            88888655432     1334678888887762    222322356778888888888766543 2344567777888888


Q ss_pred             CCCCCCCcchhh---hcCCCCCCEEEecCC
Q 006695          246 DDCSKLERFPEI---LEKMESVKCISLERT  272 (635)
Q Consensus       246 s~n~~~~~~~~~---l~~l~~L~~L~L~~n  272 (635)
                      +.|...  .|+.   +..+++|.+|++.++
T Consensus       346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYDI--IPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcCC--ChHHeeeeccCcceEEEEeccc
Confidence            777532  3432   344555666655543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=1.4e-08  Score=98.89  Aligned_cols=187  Identities=17%  Similarity=0.184  Sum_probs=133.1

Q ss_pred             CCceEEEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCc--cccCCCCCCE
Q 006695           77 ENLVKLNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPS--SVQNFNHLSM  151 (635)
Q Consensus        77 ~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~--~i~~l~~L~~  151 (635)
                      ..|++|||+...|+  ++..-++.+.+|+.|.|.++++...+- .+..-.+|+.|+|++|+..++...  -+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            45999999999887  454556889999999999998665544 477889999999999977665432  3678999999


Q ss_pred             EeecCCCCCCccCCCC---CCCCCcEEecCCCCCCC------ccCcccCCcceEEecccc-ccc-cCcccccCCCccEEE
Q 006695          152 LCFEGCKSLRSFPSNL---HFMSPIKIDFSSCFNLT------EFPQISGNITDLILSETA-IQE-VPSSIECLTNLEKLY  220 (635)
Q Consensus       152 L~L~~~~~l~~lp~~~---~l~~L~~L~l~~c~~l~------~~p~~~~~L~~L~L~~n~-i~~-lp~~~~~l~~L~~L~  220 (635)
                      |+++.|...+..-..+   --..|+.|+++||..--      .+-.-.++|..|||+.+. ++. +-..|..++.|++|.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            9999997655432211   34678899999985322      222334789999999874 332 223467899999999


Q ss_pred             eecccccccchh---cccCCCCCcEEecCCCCCCCcchhhhcCCCCCC
Q 006695          221 INRCMRLKRLST---SICKLKSLHVLVLDDCSKLERFPEILEKMESVK  265 (635)
Q Consensus       221 L~~n~~~~~lp~---~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~  265 (635)
                      ++.|..  .+|.   .+...++|.+|++.+|--.+...-....+++|+
T Consensus       345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lk  390 (419)
T KOG2120|consen  345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLK  390 (419)
T ss_pred             hhhhcC--CChHHeeeeccCcceEEEEeccccCchHHHHHHHhCcccc
Confidence            999974  3444   356789999999999755443333333445444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.18  E-value=2e-08  Score=108.15  Aligned_cols=125  Identities=21%  Similarity=0.147  Sum_probs=61.2

Q ss_pred             CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      .|...+.+.|.+..+..++.-++.|+.|+|++|++....  .+..++.|++|||+.|.+....--....+. |+.|.+.+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence            345555556666666556666666666666666654432  444555666666665543322111112222 55555555


Q ss_pred             CCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCC
Q 006695          272 TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       272 n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~  330 (635)
                      |.++++-.           +.++.+|+.||+++|-+.....  -+..|..|+.|.|.||++
T Consensus       242 N~l~tL~g-----------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTLRG-----------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhhhh-----------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            55554422           1223455555555554332211  134445555555555543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.00  E-value=6.8e-08  Score=104.24  Aligned_cols=55  Identities=16%  Similarity=0.319  Sum_probs=25.6

Q ss_pred             CceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCC
Q 006695           78 NLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNC  133 (635)
Q Consensus        78 ~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n  133 (635)
                      .|...+.++|.+..+..++.-++.|+.|+|++|++.. ...+..++.|++|||++|
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~~Lr~l~~LkhLDlsyN  219 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VDNLRRLPKLKHLDLSYN  219 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hHHHHhcccccccccccc
Confidence            3444444455554444444445555555555554322 223444444555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=2.4e-06  Score=83.57  Aligned_cols=102  Identities=14%  Similarity=0.029  Sum_probs=71.4

Q ss_pred             ceEeecCCCCCCCCCCC--C--CCCCceEEEcCCCCCccc---cccCCCCCCCcEEEccCCCCCCCCCCC-CCCCCCCEE
Q 006695           57 LRYLHWHEYPSKALPFD--F--EPENLVKLNLPYSKVVQI---WEGKKRAFKLKYVDIHNSQYLIRMPDL-SETPNLERT  128 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~--~--~l~~L~~L~L~~n~l~~l---~~~~~~l~~L~~L~Ls~n~~~~~~p~l-~~l~~L~~L  128 (635)
                      +..|-+.++.+.+.-..  |  ..+.+++|||.+|.|+..   ..-+.++|.|+.|+|+.|++...+..+ ..+.+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            33455566655544332  2  467899999999998853   333588999999999999877655544 356799999


Q ss_pred             eecCCCCC-cccCccccCCCCCCEEeecCCC
Q 006695          129 NLKNCINL-TCVPSSVQNFNHLSMLCFEGCK  158 (635)
Q Consensus       129 ~L~~n~~l-~~~~~~i~~l~~L~~L~L~~~~  158 (635)
                      .|.|.... +.....+..++.++.|.++.|+
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~  157 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNS  157 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence            99876332 2334456788888888888863

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.84  E-value=1.2e-06  Score=89.44  Aligned_cols=246  Identities=18%  Similarity=0.252  Sum_probs=144.1

Q ss_pred             CCCcEEEccCCCCCCCCC--C-CCCCCCCCEEeecCCCCCccc--CccccCCCCCCEEeecCCCCCCccCCC---CCCCC
Q 006695          100 FKLKYVDIHNSQYLIRMP--D-LSETPNLERTNLKNCINLTCV--PSSVQNFNHLSMLCFEGCKSLRSFPSN---LHFMS  171 (635)
Q Consensus       100 ~~L~~L~Ls~n~~~~~~p--~-l~~l~~L~~L~L~~n~~l~~~--~~~i~~l~~L~~L~L~~~~~l~~lp~~---~~l~~  171 (635)
                      ..|+.|.+.+++-...-+  . ...+||++.|.+.+|..++..  -..-..+++|++|++..|..++...-.   -.+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            357778888776554433  1 456788888888888644431  111245677888888877766643211   16777


Q ss_pred             CcEEecCCCCCCCcc-----CcccCCcceEEeccccccc---cCcccccCCCccEEEeecccccccch--hcccCCCCCc
Q 006695          172 PIKIDFSSCFNLTEF-----PQISGNITDLILSETAIQE---VPSSIECLTNLEKLYINRCMRLKRLS--TSICKLKSLH  241 (635)
Q Consensus       172 L~~L~l~~c~~l~~~-----p~~~~~L~~L~L~~n~i~~---lp~~~~~l~~L~~L~L~~n~~~~~lp--~~~~~l~~L~  241 (635)
                      |+.+++++|..++.-     ...-.+++.+.+.|+.=.+   +-..-+.+.-+.++++..|.......  ..-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            888888888766541     1111234455444432111   11112344556667777775544332  1123477888


Q ss_pred             EEecCCCCCCCcchh--hhcCCCCCCEEEecCCC-ccccCchhcccccchhhccCCCCccEEEcCCCCCC---ccccccc
Q 006695          242 VLVLDDCSKLERFPE--ILEKMESVKCISLERTA-ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE---SLPASIT  315 (635)
Q Consensus       242 ~L~Ls~n~~~~~~~~--~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~---~lp~~l~  315 (635)
                      .|+.++|...+..+-  --.+..+|+.|.+++++ ++..-        +..+-.+.+.|+.+++.++...   ++-.--.
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~--------ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~  369 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRG--------FTMLGRNCPHLERLDLEECGLITDGTLASLSR  369 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhh--------hhhhhcCChhhhhhcccccceehhhhHhhhcc
Confidence            888888877554332  23457888888888875 22211        1122345678888888888732   2332235


Q ss_pred             CCCCccEEeccCCCCCCcC--------CCCCCccceeccccccccc
Q 006695          316 QLSQLRSLHLKDCSMLSSL--------PELPQSLELLDAENCKQLQ  353 (635)
Q Consensus       316 ~l~~L~~L~L~~n~~l~~l--------p~l~~sL~~L~l~~c~~l~  353 (635)
                      +++.|+.|.+++|.....-        ......|..+.+.+|+.++
T Consensus       370 ~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  370 NCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             CCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence            7788888888888776543        1234567777788877653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.72  E-value=1.2e-06  Score=89.42  Aligned_cols=270  Identities=17%  Similarity=0.220  Sum_probs=172.0

Q ss_pred             CCceEEEcCCCCC---ccccccCCCCCCCcEEEccCCCCCCCCC--CC-CCCCCCCEEeecCCCCCcccC--ccccCCCC
Q 006695           77 ENLVKLNLPYSKV---VQIWEGKKRAFKLKYVDIHNSQYLIRMP--DL-SETPNLERTNLKNCINLTCVP--SSVQNFNH  148 (635)
Q Consensus        77 ~~L~~L~L~~n~l---~~l~~~~~~l~~L~~L~Ls~n~~~~~~p--~l-~~l~~L~~L~L~~n~~l~~~~--~~i~~l~~  148 (635)
                      ..|+.|.++++.=   ..+-....++++++.|.+.++..+++..  .+ ..+++|+.|+|..|..++...  .-...+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            4577888877643   2343445788899999999887554432  22 357889999999887665432  12456789


Q ss_pred             CCEEeecCCCCCCcc--CCC-CCCCCCcEEecCCCCCCCccC-----cccCCcceEEeccc-cccccCc--ccccCCCcc
Q 006695          149 LSMLCFEGCKSLRSF--PSN-LHFMSPIKIDFSSCFNLTEFP-----QISGNITDLILSET-AIQEVPS--SIECLTNLE  217 (635)
Q Consensus       149 L~~L~L~~~~~l~~l--p~~-~~l~~L~~L~l~~c~~l~~~p-----~~~~~L~~L~L~~n-~i~~lp~--~~~~l~~L~  217 (635)
                      |++|+++.|..+..-  ... -++..++.+.++||..+..-.     .....+.++++..+ .++...-  .-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            999999998766541  111 156667777777886554211     11133556665554 2332221  124578899


Q ss_pred             EEEeecccccccch-hc-ccCCCCCcEEecCCCCCCCcch--hhhcCCCCCCEEEecCCCccccCchhcccccchhhccC
Q 006695          218 KLYINRCMRLKRLS-TS-ICKLKSLHVLVLDDCSKLERFP--EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIG  293 (635)
Q Consensus       218 ~L~L~~n~~~~~lp-~~-~~~l~~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~  293 (635)
                      .|+.++|...+..+ .. ..+..+|+.|.+++|...+..-  ..-.+.+.|+.+++.++....-- .      |..+..+
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-t------L~sls~~  370 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-T------LASLSRN  370 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-h------HhhhccC
Confidence            99999987755433 22 3457899999999998755322  12245788999999887654211 1      2234467


Q ss_pred             CCCccEEEcCCCCC-C-----cccccccCCCCccEEeccCCCCCCcCCC----CCCccceeccccccccc
Q 006695          294 GSSLRQLNLSRNDS-E-----SLPASITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQ  353 (635)
Q Consensus       294 ~~~L~~L~Ls~n~~-~-----~lp~~l~~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l~  353 (635)
                      ++.|+.|.|++|.. +     .+..+-..+..|..|.|++|+.+..---    .=++|+.+++.+|....
T Consensus       371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            79999999998872 2     2233446778899999999988653211    12467777777776543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.65  E-value=5.5e-05  Score=53.28  Aligned_cols=35  Identities=31%  Similarity=0.607  Sum_probs=19.7

Q ss_pred             CccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      +|++|++++|+++.+|..+++|++|+.|++++|++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            45566666666666655566666666666666543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.65  E-value=3.5e-05  Score=54.29  Aligned_cols=37  Identities=16%  Similarity=0.237  Sum_probs=25.5

Q ss_pred             CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCC
Q 006695           77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYL  113 (635)
Q Consensus        77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~  113 (635)
                      ++|++|++++|+|+.+|..+++|++|+.|++++|++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            3677777777777777766777777777777777643

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.47  E-value=0.00023  Score=66.42  Aligned_cols=103  Identities=20%  Similarity=0.247  Sum_probs=54.9

Q ss_pred             CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695          215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG  294 (635)
Q Consensus       215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~  294 (635)
                      +...+||++|.+...  ..|..++.|.+|.+.+|.++..-|..-..+++|..|.+.+|+|.++-+- .       -...+
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~-------pLa~~  112 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-D-------PLASC  112 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-c-------hhccC
Confidence            445555655554321  1244556666666666666655555555556666666666666644321 0       01344


Q ss_pred             CCccEEEcCCCCCCcccc----cccCCCCccEEeccC
Q 006695          295 SSLRQLNLSRNDSESLPA----SITQLSQLRSLHLKD  327 (635)
Q Consensus       295 ~~L~~L~Ls~n~~~~lp~----~l~~l~~L~~L~L~~  327 (635)
                      +.|++|.+-+|..+.-+.    .+..+++|+.||..+
T Consensus       113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            566666666666554432    145556666666554

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.45  E-value=0.00026  Score=65.98  Aligned_cols=107  Identities=16%  Similarity=0.055  Sum_probs=62.3

Q ss_pred             ccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccC-CCCCCCcEEEccCCCCC--CCCCCCCCCCCCC
Q 006695           50 LEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYL--IRMPDLSETPNLE  126 (635)
Q Consensus        50 l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~--~~~p~l~~l~~L~  126 (635)
                      +....++...+++++|.+..++.--.+++|.+|.+.+|+|+.+...+ ..+++|+.|.|.+|.+.  .++..+..+|.|+
T Consensus        37 lg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~  116 (233)
T KOG1644|consen   37 LGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE  116 (233)
T ss_pred             ccccccccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence            44444456666777777666655446677777777777777765555 33556777777777643  2233456667777


Q ss_pred             EEeecCCCCCcccC---ccccCCCCCCEEeecC
Q 006695          127 RTNLKNCINLTCVP---SSVQNFNHLSMLCFEG  156 (635)
Q Consensus       127 ~L~L~~n~~l~~~~---~~i~~l~~L~~L~L~~  156 (635)
                      +|.+-+|+....-.   -.+..+++|+.||..+
T Consensus       117 ~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  117 YLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             eeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77776664332211   1244555555555543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.45  E-value=4e-05  Score=86.92  Aligned_cols=107  Identities=20%  Similarity=0.128  Sum_probs=71.1

Q ss_pred             CCCCCcEEecCCCCC----CCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccc-cchhcccCCCCCcE
Q 006695          168 HFMSPIKIDFSSCFN----LTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLK-RLSTSICKLKSLHV  242 (635)
Q Consensus       168 ~l~~L~~L~l~~c~~----l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~  242 (635)
                      .+|+|+.|.+++-..    ...+-..++||..||+++++++.+ ..++++++|+.|.+.+=.+.. ..-..+.+|++|+.
T Consensus       146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            456666666655322    223345678899999999999888 678899999999888755443 12234667889999


Q ss_pred             EecCCCCCCCcc------hhhhcCCCCCCEEEecCCCcc
Q 006695          243 LVLDDCSKLERF------PEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       243 L~Ls~n~~~~~~------~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      ||+|.-......      -+.-..+|.|+.||.+++.+.
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            998875544321      122334777777777776655

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=5.6e-05  Score=74.22  Aligned_cols=186  Identities=15%  Similarity=0.150  Sum_probs=93.6

Q ss_pred             CCCCCEEeecCCCCCc--ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEec
Q 006695          122 TPNLERTNLKNCINLT--CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILS  199 (635)
Q Consensus       122 l~~L~~L~L~~n~~l~--~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~  199 (635)
                      ++.++.|+|.+|....  ++...+.+++.|+.|+++.|....                    -++.+|....+|+.|.|.
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s--------------------~I~~lp~p~~nl~~lVLN  129 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS--------------------DIKSLPLPLKNLRVLVLN  129 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC--------------------ccccCcccccceEEEEEc
Confidence            3445555555553221  223334556666666665543221                    222333333455555555


Q ss_pred             ccccc--ccCcccccCCCccEEEeecccccccc--hhcccC-CCCCcEEecCCCCCCCc--chhhhcCCCCCCEEEecCC
Q 006695          200 ETAIQ--EVPSSIECLTNLEKLYINRCMRLKRL--STSICK-LKSLHVLVLDDCSKLER--FPEILEKMESVKCISLERT  272 (635)
Q Consensus       200 ~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~l--p~~~~~-l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~n  272 (635)
                      ++.+.  ...+.+..++.++.|.++.|......  ...... -+.+++|...+|.....  .-..-.-++++..+-+..|
T Consensus       130 gT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~  209 (418)
T KOG2982|consen  130 GTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG  209 (418)
T ss_pred             CCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence            55443  33344566777777777776432111  011111 12344444444432110  0011123456666677777


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcCC
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~lp  335 (635)
                      .+.+....-        -+..++.+--|+|+.|++.++.+  .+.+++.|..|.++++++...+.
T Consensus       210 PlK~~s~ek--------~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  210 PLKTESSEK--------GSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             cccchhhcc--------cCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence            666443211        11234566678888888777653  46778888888888877766553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.35  E-value=2.4e-05  Score=68.23  Aligned_cols=65  Identities=26%  Similarity=0.400  Sum_probs=35.2

Q ss_pred             cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCC
Q 006695          259 EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLS  332 (635)
Q Consensus       259 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~  332 (635)
                      .....|+..+|++|.+..+|..+.         ...+.++.|+|++|.+..+|..+..++.|+.|+++.|++..
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft---------~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~  114 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFT---------IKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNA  114 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHh---------hccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcccc
Confidence            334445555555555555554332         22345556666666666666556666666666666555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.30  E-value=9.5e-06  Score=70.70  Aligned_cols=77  Identities=13%  Similarity=0.109  Sum_probs=54.1

Q ss_pred             ceEeecCCCCCCCCCCCC--CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCC
Q 006695           57 LRYLHWHEYPSKALPFDF--EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNC  133 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n  133 (635)
                      |+..++++|.++++|..|  ..+.+++|+|++|.|.++|+.+..++.|+.|+++.|++.....-+..+.+|-.|+..+|
T Consensus        55 l~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n  133 (177)
T KOG4579|consen   55 LTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN  133 (177)
T ss_pred             EEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence            666677777777777766  45577777777777777777777777777777777776555444555667777776665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.21  E-value=0.00025  Score=68.86  Aligned_cols=37  Identities=22%  Similarity=0.417  Sum_probs=17.8

Q ss_pred             CCCCCCcEEEccCCCCCCCCCC-----CCCCCCCCEEeecCC
Q 006695           97 KRAFKLKYVDIHNSQYLIRMPD-----LSETPNLERTNLKNC  133 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p~-----l~~l~~L~~L~L~~n  133 (635)
                      .++++|+..+||+|.+....|.     ++..++|++|.|++|
T Consensus        89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn  130 (388)
T COG5238          89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN  130 (388)
T ss_pred             hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC
Confidence            4445555555555554433331     344455555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.75  E-value=0.00079  Score=76.52  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=45.6

Q ss_pred             cccCCcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC-cchhhhcCCCCC
Q 006695          188 QISGNITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE-RFPEILEKMESV  264 (635)
Q Consensus       188 ~~~~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L  264 (635)
                      ..+|+|+.|.+.+-.+..  +-.-..++++|..||++++++...  .+++.+++|+.|.+.+-.+.. .--..+.++++|
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L  222 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKL  222 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCC
Confidence            344666666666654432  222245566666666666655433  445566666666665533322 112244556666


Q ss_pred             CEEEecCCCcc
Q 006695          265 KCISLERTAIT  275 (635)
Q Consensus       265 ~~L~L~~n~l~  275 (635)
                      +.||+|.....
T Consensus       223 ~vLDIS~~~~~  233 (699)
T KOG3665|consen  223 RVLDISRDKNN  233 (699)
T ss_pred             Ceeeccccccc
Confidence            66666655444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.66  E-value=0.00081  Score=65.38  Aligned_cols=59  Identities=32%  Similarity=0.429  Sum_probs=35.9

Q ss_pred             CCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcCC------CCCCccceeccccccccc
Q 006695          295 SSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSLP------ELPQSLELLDAENCKQLQ  353 (635)
Q Consensus       295 ~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~lp------~l~~sL~~L~l~~c~~l~  353 (635)
                      ++|++|++++|++..+..  .+..+.+|..|++.+|.-.+.--      .++++|++||-.....-+
T Consensus        91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~E  157 (260)
T KOG2739|consen   91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEE  157 (260)
T ss_pred             CceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcc
Confidence            555555555555433211  35667778888888887766211      256888888877665444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.44  E-value=0.00085  Score=65.31  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=17.6

Q ss_pred             CCCceEEEcCCCCCc-----cccccCCCCCCCcEEEccC
Q 006695           76 PENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHN  109 (635)
Q Consensus        76 l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~  109 (635)
                      +..+++++|++|.|.     .+...+.+-.+|+..++++
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd   67 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSD   67 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhh
Confidence            345666666666554     2233344455555555554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.03  E-value=0.0033  Score=61.24  Aligned_cols=100  Identities=20%  Similarity=0.102  Sum_probs=52.8

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCC--CCc-cccccCCCCCCCcEEEccCCCCC--CCCCCCCCCCCCCEEeec
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYS--KVV-QIWEGKKRAFKLKYVDIHNSQYL--IRMPDLSETPNLERTNLK  131 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n--~l~-~l~~~~~~l~~L~~L~Ls~n~~~--~~~p~l~~l~~L~~L~L~  131 (635)
                      |+.|...+..+.++-..-.+++|+.|.++.|  ++. .++.-...+++|++|+|++|++.  ..++.+..+.+|..|++.
T Consensus        45 le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~  124 (260)
T KOG2739|consen   45 LELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLF  124 (260)
T ss_pred             hhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcc
Confidence            5555555555444433335667777777776  332 33333445577777777777643  223345566666677776


Q ss_pred             CCCCCccc---CccccCCCCCCEEeecC
Q 006695          132 NCINLTCV---PSSVQNFNHLSMLCFEG  156 (635)
Q Consensus       132 ~n~~l~~~---~~~i~~l~~L~~L~L~~  156 (635)
                      +|..+..-   ...|.-+++|++|+-.+
T Consensus       125 n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  125 NCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             cCCccccccHHHHHHHHhhhhccccccc
Confidence            66444311   11244455666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.01  E-value=0.00058  Score=66.65  Aligned_cols=96  Identities=27%  Similarity=0.336  Sum_probs=67.1

Q ss_pred             CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cc
Q 006695          237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SI  314 (635)
Q Consensus       237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l  314 (635)
                      +.+.+.|+..||.+...  .....|+.|+.|.|+-|+|+.+..           +..++.|++|+|..|.|.++..  .+
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p-----------l~rCtrLkElYLRkN~I~sldEL~YL   84 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP-----------LQRCTRLKELYLRKNCIESLDELEYL   84 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh-----------HHHHHHHHHHHHHhcccccHHHHHHH
Confidence            45566677777765442  345678888888888888887643           2445778888888888777754  36


Q ss_pred             cCCCCccEEeccCCCCCCcCCC--------CCCccceec
Q 006695          315 TQLSQLRSLHLKDCSMLSSLPE--------LPQSLELLD  345 (635)
Q Consensus       315 ~~l~~L~~L~L~~n~~l~~lp~--------l~~sL~~L~  345 (635)
                      .++++|+.|.|..|+-.+.-+.        .+|+|+.||
T Consensus        85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7888888888888887766554        356777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.87  E-value=0.033  Score=49.05  Aligned_cols=106  Identities=18%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             ccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCC
Q 006695           12 HLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKV   89 (635)
Q Consensus        12 ~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l   89 (635)
                      .+...+|.++++|+.+.+.. .+.         .+.........+|+.+.+.++ +..++.. | ...+|+.+.+.. .+
T Consensus         2 ~i~~~~F~~~~~l~~i~~~~-~~~---------~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~   69 (129)
T PF13306_consen    2 SIGNNAFYNCSNLESITFPN-TIK---------KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NL   69 (129)
T ss_dssp             EE-TTTTTT-TT--EEEETS-T-----------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT
T ss_pred             EECHHHHhCCCCCCEEEECC-Cee---------EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cc
Confidence            46778899999999998864 233         343333333334666666553 5555554 3 444666666654 44


Q ss_pred             ccccc-cCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecC
Q 006695           90 VQIWE-GKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKN  132 (635)
Q Consensus        90 ~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~  132 (635)
                      ..++. .+..+++|+.+++..+  ...++  .+.+. +|+.+.+..
T Consensus        70 ~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   70 KSIGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             -EE-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred             cccccccccccccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence            44433 2344666666666543  22222  24554 555555543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.80  E-value=0.0043  Score=68.24  Aligned_cols=34  Identities=32%  Similarity=0.588  Sum_probs=19.7

Q ss_pred             ccEEeccCCCCCCcCCC--C---CCccceeccccccccc
Q 006695          320 LRSLHLKDCSMLSSLPE--L---PQSLELLDAENCKQLQ  353 (635)
Q Consensus       320 L~~L~L~~n~~l~~lp~--l---~~sL~~L~l~~c~~l~  353 (635)
                      ++.|+++.|.....---  .   -..++.+++.+|+...
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence            67777777765443211  1   3456667777776554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.65  E-value=0.00045  Score=67.41  Aligned_cols=79  Identities=15%  Similarity=0.106  Sum_probs=39.3

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC---CCCCCCCCCEEeecCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP---DLSETPNLERTNLKNC  133 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~L~L~~n  133 (635)
                      .+.|+.-|+.+..+.-.-.++.|++|.|+-|+|+.+ +.+..+++|+.|.|..|.+. .+.   -+.++|+|+.|.|..|
T Consensus        21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~EN   98 (388)
T KOG2123|consen   21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDEN   98 (388)
T ss_pred             hhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccC
Confidence            334444444444333223455566666666666555 34555566666666655432 111   1455555666666555


Q ss_pred             CCCc
Q 006695          134 INLT  137 (635)
Q Consensus       134 ~~l~  137 (635)
                      +-.+
T Consensus        99 PCc~  102 (388)
T KOG2123|consen   99 PCCG  102 (388)
T ss_pred             Cccc
Confidence            4333

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.13  E-value=0.062  Score=47.31  Aligned_cols=14  Identities=14%  Similarity=0.202  Sum_probs=5.3

Q ss_pred             cccCCCccEEEeec
Q 006695          210 IECLTNLEKLYINR  223 (635)
Q Consensus       210 ~~~l~~L~~L~L~~  223 (635)
                      |.++++|+.+.+.+
T Consensus        31 F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   31 FSNCTSLKSINFPN   44 (129)
T ss_dssp             TTT-TT-SEEEESS
T ss_pred             cccccccccccccc
Confidence            44444444444443

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.11  E-value=0.0089  Score=35.10  Aligned_cols=18  Identities=44%  Similarity=0.645  Sum_probs=9.0

Q ss_pred             ccEEEcCCCCCCcccccc
Q 006695          297 LRQLNLSRNDSESLPASI  314 (635)
Q Consensus       297 L~~L~Ls~n~~~~lp~~l  314 (635)
                      |++|||++|+++.+|.++
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            445555555555555443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.58  E-value=0.019  Score=33.65  Aligned_cols=21  Identities=33%  Similarity=0.430  Sum_probs=12.3

Q ss_pred             CcceEEeccccccccCccccc
Q 006695          192 NITDLILSETAIQEVPSSIEC  212 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~  212 (635)
                      +|++|+|++|.|+.+|++|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            356666666666666655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.48  E-value=0.051  Score=29.62  Aligned_cols=14  Identities=57%  Similarity=0.688  Sum_probs=4.6

Q ss_pred             ccEEEcCCCCCCcc
Q 006695          297 LRQLNLSRNDSESL  310 (635)
Q Consensus       297 L~~L~Ls~n~~~~l  310 (635)
                      |+.|+|++|+++++
T Consensus         3 L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    3 LRTLDLSNNRLTSL   16 (17)
T ss_dssp             -SEEEETSS--SSE
T ss_pred             cCEEECCCCCCCCC
Confidence            34444444444333

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.24  E-value=0.025  Score=62.12  Aligned_cols=111  Identities=24%  Similarity=0.348  Sum_probs=57.3

Q ss_pred             CCCccEEEeeccccccc--chhcccCCCCCcEEecCCC-CCCCcch----hhhcCCCCCCEEEecCCC-ccccCchhccc
Q 006695          213 LTNLEKLYINRCMRLKR--LSTSICKLKSLHVLVLDDC-SKLERFP----EILEKMESVKCISLERTA-ITELPSSFANL  284 (635)
Q Consensus       213 l~~L~~L~L~~n~~~~~--lp~~~~~l~~L~~L~Ls~n-~~~~~~~----~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l  284 (635)
                      ++.|+.|.+.+|.....  +-......+.|+.|++++| ......+    .....+.+|+.|+++++. +++.-      
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~------  260 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG------  260 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh------
Confidence            56666666666655443  3344455666777777662 2222111    233345666666666655 33221      


Q ss_pred             ccchhhccCCCCccEEEcCCCC-CC--cccccccCCCCccEEeccCCCCC
Q 006695          285 EGLKDLYIGGSSLRQLNLSRND-SE--SLPASITQLSQLRSLHLKDCSML  331 (635)
Q Consensus       285 ~~L~~l~~~~~~L~~L~Ls~n~-~~--~lp~~l~~l~~L~~L~L~~n~~l  331 (635)
                        +..+...+++|+.|.+.+|. ++  .+-.....+++|++|+|++|..+
T Consensus       261 --l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  261 --LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             --HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence              11122235666666666555 32  22223355666777777766655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.20  E-value=0.065  Score=29.22  Aligned_cols=17  Identities=24%  Similarity=0.573  Sum_probs=9.3

Q ss_pred             CCCCEEEecCCCccccC
Q 006695          262 ESVKCISLERTAITELP  278 (635)
Q Consensus       262 ~~L~~L~L~~n~l~~lp  278 (635)
                      ++|+.|++++|+++++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35777777777777665

...

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=90.72  E-value=0.18  Score=28.61  Aligned_cols=20  Identities=65%  Similarity=1.230  Sum_probs=17.7

Q ss_pred             CceEEEcCCCCCccccccCC
Q 006695           78 NLVKLNLPYSKVVQIWEGKK   97 (635)
Q Consensus        78 ~L~~L~L~~n~l~~l~~~~~   97 (635)
                      +|++|+|++++++++|++.+
T Consensus         1 ~LVeL~m~~S~lekLW~G~k   20 (20)
T PF07725_consen    1 NLVELNMPYSKLEKLWEGVK   20 (20)
T ss_pred             CcEEEECCCCChHHhcCccC
Confidence            58999999999999998763

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.86  E-value=0.011  Score=56.53  Aligned_cols=78  Identities=14%  Similarity=0.121  Sum_probs=36.2

Q ss_pred             ceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCC
Q 006695           57 LRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCI  134 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~  134 (635)
                      .+.|+++.+.+..+-..| -++.|+.|+++.|.+..+|+..+.+..++.+++..|......-.++..+.++++++.++.
T Consensus        44 ~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   44 VTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             eeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            333444444443333333 234455555555555555555555555555555444432222245555555555555543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.24  E-value=0.47  Score=28.85  Aligned_cols=19  Identities=47%  Similarity=0.732  Sum_probs=12.1

Q ss_pred             CCccEEEcCCCCCCccccc
Q 006695          295 SSLRQLNLSRNDSESLPAS  313 (635)
Q Consensus       295 ~~L~~L~Ls~n~~~~lp~~  313 (635)
                      ++|+.|+|++|+++.+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.24  E-value=0.47  Score=28.85  Aligned_cols=19  Identities=47%  Similarity=0.732  Sum_probs=12.1

Q ss_pred             CCccEEEcCCCCCCccccc
Q 006695          295 SSLRQLNLSRNDSESLPAS  313 (635)
Q Consensus       295 ~~L~~L~Ls~n~~~~lp~~  313 (635)
                      ++|+.|+|++|+++.+|.+
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566666666666666654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.91  E-value=0.54  Score=28.56  Aligned_cols=21  Identities=14%  Similarity=0.436  Sum_probs=17.3

Q ss_pred             CCCCCEEEecCCCccccCchh
Q 006695          261 MESVKCISLERTAITELPSSF  281 (635)
Q Consensus       261 l~~L~~L~L~~n~l~~lp~~~  281 (635)
                      +++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999998753

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.91  E-value=0.54  Score=28.56  Aligned_cols=21  Identities=14%  Similarity=0.436  Sum_probs=17.3

Q ss_pred             CCCCCEEEecCCCccccCchh
Q 006695          261 MESVKCISLERTAITELPSSF  281 (635)
Q Consensus       261 l~~L~~L~L~~n~l~~lp~~~  281 (635)
                      +++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            467899999999999998753

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=84.28  E-value=0.021  Score=62.25  Aligned_cols=168  Identities=21%  Similarity=0.206  Sum_probs=73.9

Q ss_pred             cccCCCccEEEeeccccccc----chhcccCC-CCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccCch
Q 006695          210 IECLTNLEKLYINRCMRLKR----LSTSICKL-KSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELPSS  280 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~----lp~~~~~l-~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp~~  280 (635)
                      +.....|+.|++++|.+...    +-..+... ..|++|++..|.+...    +...+...+.++.++++.|.+...-. 
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~-  189 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGL-  189 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhh-
Confidence            44445555555555554321    11112222 3445555555554432    33344445556666666555531100 


Q ss_pred             hcccccchhhccCCCCccEEEcCCCCCCcc-----cccccCCCC-ccEEeccCCCCCCcCC----C---CC-Cccceecc
Q 006695          281 FANLEGLKDLYIGGSSLRQLNLSRNDSESL-----PASITQLSQ-LRSLHLKDCSMLSSLP----E---LP-QSLELLDA  346 (635)
Q Consensus       281 ~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-----p~~l~~l~~-L~~L~L~~n~~l~~lp----~---l~-~sL~~L~l  346 (635)
                      ..-.+.++..+....++++|++++|.++.-     -..+...+. +..|++..|..-...-    +   .+ ..++.+++
T Consensus       190 ~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l  269 (478)
T KOG4308|consen  190 LVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDL  269 (478)
T ss_pred             HHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhh
Confidence            000001111122345566666666654421     112333444 5556666554432210    0   11 35566666


Q ss_pred             cccccccc----cCccccCccccchhhhhhhhhccc
Q 006695          347 ENCKQLQF----IPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       347 ~~c~~l~~----~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      +.|.+...    +...+...+.++.+.+..|++...
T Consensus       270 ~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  270 SRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             hcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            66655432    233445555666666666665544

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=80.29  E-value=0.037  Score=60.45  Aligned_cols=156  Identities=24%  Similarity=0.273  Sum_probs=89.2

Q ss_pred             CcceEEeccccccc-----cCcccccC-CCccEEEeeccccccc----chhcccCCCCCcEEecCCCCCCC----cchhh
Q 006695          192 NITDLILSETAIQE-----VPSSIECL-TNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSKLE----RFPEI  257 (635)
Q Consensus       192 ~L~~L~L~~n~i~~-----lp~~~~~l-~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~~~----~~~~~  257 (635)
                      .|..|++++|.+..     +-..+... ..|++|++..|.+...    +...+.....++.++++.|.+..    .++..
T Consensus       116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~  195 (478)
T KOG4308|consen  116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA  195 (478)
T ss_pred             cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence            45555555555541     11112222 4556666666665432    34445556777777777776642    12223


Q ss_pred             hc----CCCCCCEEEecCCCccccCchhcccccchhhccCCCC-ccEEEcCCCCCCc-----ccccccCC-CCccEEecc
Q 006695          258 LE----KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS-LRQLNLSRNDSES-----LPASITQL-SQLRSLHLK  326 (635)
Q Consensus       258 l~----~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~-L~~L~Ls~n~~~~-----lp~~l~~l-~~L~~L~L~  326 (635)
                      +.    ...++++|++.+|.++..     .+..+...+...++ +..|++..|.+..     +...+..+ ..+++++++
T Consensus       196 l~~~~~~~~~le~L~L~~~~~t~~-----~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~  270 (478)
T KOG4308|consen  196 LESAASPLSSLETLKLSRCGVTSS-----SCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLS  270 (478)
T ss_pred             hhhhhcccccHHHHhhhhcCcChH-----HHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhh
Confidence            33    467788888888877721     11222233344444 6678888887653     33445555 677888888


Q ss_pred             CCCCCCcCCC-------CCCccceecccccccc
Q 006695          327 DCSMLSSLPE-------LPQSLELLDAENCKQL  352 (635)
Q Consensus       327 ~n~~l~~lp~-------l~~sL~~L~l~~c~~l  352 (635)
                      .|.+...-..       ..+.++.|.+.+|+..
T Consensus       271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             cCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            8887754332       1247888888887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	635
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		5e-07

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 23/159 (14%)
Query: 183 LTEFPQISGNITDL---ILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
           L +FP  +  ++ L    +    + E+P + +    LE L + R   L+ L  SI  L  
Sbjct: 93  LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNP-LRALPASIASLNR 151
Query: 240 LHVLVLDDCSKLERFPEILEKMES---------VKCISLERTAITELPSSFANLEGLKDL 290
           L  L +  C +L   PE L   ++         ++ + LE T I  LP+S ANL+ LK L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 291 YIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCS 329
            I  S L           +L  +I  L +L  L L+ C+
Sbjct: 212 KIRNSPL----------SALGPAIHHLPKLEELDLRGCT 240

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	635
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-13
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-15
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-13
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-10
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-10
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-04
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  143 bits (364), Expect = 2e-38
 Identities = 57/286 (19%), Positives = 106/286 (37%), Gaps = 54/286 (18%)

Query: 124 NLERTNLKNCINLTCVPSSVQNFNHLSMLCFEG-------------------CKSLRSFP 164
             E    +    L      +  +                              ++L++  
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 165 SNLHFMSPIK---IDFSSCFNLTEFPQISGNITDLI---LSETAIQEVPSSIECLTNLEK 218
             L   +      ++  S   L +FP  +  ++ L    +    + E+P +++    LE 
Sbjct: 73  DLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLET 131

Query: 219 LYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE---------ILEKMESVKCISL 269
           L + R   L+ L  SI  L  L  L +  C +L   PE           + + +++ + L
Sbjct: 132 LTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 270 ERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCS 329
           E T I  LP+S ANL           +L+ L +  +   +L  +I  L +L  L L+ C+
Sbjct: 191 EWTGIRSLPASIANL----------QNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCT 240

Query: 330 MLSSLPE----LPQSLELLDAENCKQLQFIP-EI--LSGLEEVDAS 368
            L + P         L+ L  ++C  L  +P +I  L+ LE++D  
Sbjct: 241 ALRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (347), Expect = 4e-36
 Identities = 72/369 (19%), Positives = 116/369 (31%), Gaps = 70/369 (18%)

Query: 3   LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLD----QGLEYLPNELR 58
           L     T++       +                      +   ++    + L+   + L 
Sbjct: 17  LYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE 76

Query: 59  YLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD 118
                                V L L    + Q  +   R   L+++ I  +  L+ +PD
Sbjct: 77  DATQ--------------PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPD 121

Query: 119 -LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDF 177
            + +   LE   L     L  +P+S+ + N L  L    C  L   P  L          
Sbjct: 122 TMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPL---------- 170

Query: 178 SSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKL 237
           +S     E   +  N+  L L  T I+ +P+SI  L NL+ L I     L  L  +I  L
Sbjct: 171 ASTDASGEHQGLV-NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHL 228

Query: 238 KSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSL 297
             L  L L  C+ L                          P  F             + L
Sbjct: 229 PKLEELDLRGCTAL-----------------------RNYPPIFGGR----------APL 255

Query: 298 RQLNLS-RNDSESLPASITQLSQLRSLHLKDCSMLSSLPELP---QSLELLDAENCKQLQ 353
           ++L L   ++  +LP  I +L+QL  L L+ C  LS LP L     +  ++      Q Q
Sbjct: 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315

Query: 354 FIPEILSGL 362
                    
Sbjct: 316 LDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 4e-25
 Identities = 48/266 (18%), Positives = 88/266 (33%), Gaps = 53/266 (19%)

Query: 136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLH-FMSPIKIDFSSCFNLTEFPQISGNIT 194
           +        + +    L F+G  +LR +   L  +      D +   +       + N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN-NPQ 59

Query: 195 DLILSETAIQEVPSSIECLT--NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE 252
               +  A++     +E  T      L +     L +      +L  L  + +D    L 
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLM 117

Query: 253 RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDS-ESLP 311
             P+ +++   ++ ++L R  +  LP+S A+L          + LR+L++        LP
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRALPASIASL----------NRLRELSIRACPELTELP 167

Query: 312 ASITQ---------LSQLRSLHLKDCSMLSSLPE--------------------LP---- 338
             +           L  L+SL L + + + SLP                     L     
Sbjct: 168 EPLASTDASGEHQGLVNLQSLRL-EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH 226

Query: 339 --QSLELLDAENCKQLQFIPEILSGL 362
               LE LD   C  L+  P I  G 
Sbjct: 227 HLPKLEELDLRGCTALRNYPPIFGGR 252

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 90.0 bits (224), Expect = 8e-20
 Identities = 27/174 (15%), Positives = 52/174 (29%), Gaps = 25/174 (14%)

Query: 209 SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCIS 268
                +  E LY      L+     + + +  +    +      R         + +  +
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NNPQIET 62

Query: 269 LERTAITELPSSFANL--EGLKDLYIGG-------------SSLRQLNLSRNDSESLPAS 313
               A+        +    G   L +               S L+ + +       LP +
Sbjct: 63  RTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDT 122

Query: 314 ITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQFIPEILSGLE 363
           + Q + L +L L     L +LP     L   L  L    C +L  +PE L+  +
Sbjct: 123 MQQFAGLETLTLARNP-LRALPASIASL-NRLRELSIRACPELTELPEPLASTD 174

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  100 bits (252), Expect = 7e-23
 Identities = 71/410 (17%), Positives = 138/410 (33%), Gaps = 71/410 (17%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L  S   +T +   P+   ++ +L                       + L  LP  L YL
Sbjct: 96  LVASCNSLTEL---PELPQSLKSLLVDNNN----------------LKALSDLPPLLEYL 136

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
                  + LP       L  +++  + + ++ +       L+++   N+Q L  +P+L 
Sbjct: 137 GVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQ-LEELPELQ 192

Query: 121 ETPNLERTNLKNCINLTCVPSSVQN-------FNHLSML-CFEGCKSLRSFPSNLHFMSP 172
             P L      N  +L  +P    +        N L  L   +    L            
Sbjct: 193 NLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPELQNLPFLT----------- 240

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST 232
             I   +   L   P +  ++  L + +  + ++P   + LT L+            LS 
Sbjct: 241 -TIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN----IFSGLSE 294

Query: 233 SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLE------- 285
               L  L+       +++    ++   +E    +++    + ELP+    LE       
Sbjct: 295 LPPNLYYLNA----SSNEIRSLCDLPPSLEE---LNVSNNKLIELPALPPRLERLIASFN 347

Query: 286 GLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLD 345
            L ++     +L+QL++  N     P     +  LR         L+ +PELPQ+L+ L 
Sbjct: 348 HLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH-----LAEVPELPQNLKQLH 402

Query: 346 AENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCL 395
            E    L+  P+I   +E++  +          A          VF +  
Sbjct: 403 VETN-PLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 98.5 bits (246), Expect = 5e-22
 Identities = 60/280 (21%), Positives = 114/280 (40%), Gaps = 38/280 (13%)

Query: 101 KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL 160
           +   ++++N   L  +P+    P+LE     +C +LT +P   Q+   L +      K+L
Sbjct: 72  QAHELELNNLG-LSSLPE--LPPHLESLVA-SCNSLTELPELPQSLKSLLVDNNN-LKAL 126

Query: 161 RSFPSNLHFMSPIKIDFSSCFNLTEFPQISG--NITDLILSETAIQEVPSSIECLTNLEK 218
              P  L       +  S+   L + P++     +  + +   +++++P       +LE 
Sbjct: 127 SDLPPLL-----EYLGVSNN-QLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEF 177

Query: 219 LYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP 278
           +      +L+ L   +  L  L  +  D+   L++ P++   +ES   I      + ELP
Sbjct: 178 IAAGNN-QLEELP-ELQNLPFLTAIYADNN-SLKKLPDLPLSLES---IVAGNNILEELP 231

Query: 279 SSFANLEGLKDLYIGG----------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDC 328
               NL  L  +Y              SL  LN+  N    LP     L+ L        
Sbjct: 232 E-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI-- 288

Query: 329 SMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDAS 368
              S L ELP +L  L+A +  +++ + ++   LEE++ S
Sbjct: 289 --FSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEELNVS 325

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 4e-21
 Identities = 58/257 (22%), Positives = 104/257 (40%), Gaps = 40/257 (15%)

Query: 127 RTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI-DFSSCF---- 181
           +  L++  NLT +P   +N    +       +  R+ P        + +     C     
Sbjct: 14  QEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQA 73

Query: 182 --------NLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS 233
                    L+  P++  ++  L+ S  ++ E+P   + L +L     N    LK LS  
Sbjct: 74  HELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNN----LKALSDL 129

Query: 234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIG 293
              L+ L V      ++LE+ PE+ +    +K I ++  ++ +LP    +LE        
Sbjct: 130 PPLLEYLGV----SNNQLEKLPEL-QNSSFLKIIDVDNNSLKKLPDLPPSLE-------- 176

Query: 294 GSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQ 353
                 +    N  E LP  +  L  L +++  + S L  LP+LP SLE + A N   L+
Sbjct: 177 -----FIAAGNNQLEELP-ELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNN-ILE 228

Query: 354 FIPEI--LSGLEEVDAS 368
            +PE+  L  L  + A 
Sbjct: 229 ELPELQNLPFLTTIYAD 245

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 3e-19
 Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 27/198 (13%)

Query: 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS-- 249
            + + +   + + E+P   E + +  + Y       +       + + + V  L DC   
Sbjct: 12  FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71

Query: 250 ----------KLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG----- 294
                      L   PE+   +ES   +     ++TELP    +L+ L            
Sbjct: 72  QAHELELNNLGLSSLPELPPHLES---LVASCNSLTELPELPQSLKSLLVDNNNLKALSD 128

Query: 295 --SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQL 352
               L  L +S N  E LP  +   S L+ + + + S L  LP+LP SLE + A N  QL
Sbjct: 129 LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNN-QL 185

Query: 353 QFIPEI--LSGLEEVDAS 368
           + +PE+  L  L  + A 
Sbjct: 186 EELPELQNLPFLTAIYAD 203

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.5 bits (240), Expect = 4e-21
 Identities = 55/308 (17%), Positives = 105/308 (34%), Gaps = 48/308 (15%)

Query: 47  DQGLEYLPNE----LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKL 102
           + GL  LP+     +  L   +    +LP    P  L  L +  +++  +        +L
Sbjct: 49  ESGLTTLPDCLPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVLPPGLLEL 106

Query: 103 KYVDIHNSQYLIRMPDLSETP-NLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR 161
                  +        L   P  L +  +     LT +P        LS+   +    L 
Sbjct: 107 SIFSNPLTH-------LPALPSGLCKLWIFGN-QLTSLPVLPPGLQELSVSDNQ----LA 154

Query: 162 SFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYI 221
           S P+    +   K+   +   LT  P +   + +L +S+  +  +P+    L  L     
Sbjct: 155 SLPALPSELC--KLWAYNN-QLTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNN 211

Query: 222 NRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSF 281
               RL  L      LK L V      ++L   P +  +++    + +    +T LP   
Sbjct: 212 ----RLTSLPALPSGLKELIV----SGNRLTSLPVLPSELKE---LMVSGNRLTSLPMLP 260

Query: 282 ANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP-ELPQS 340
           + L               L++ RN    LP S+  LS   +++L+    LS    +  + 
Sbjct: 261 SGL-------------LSLSVYRNQLTRLPESLIHLSSETTVNLEGNP-LSERTLQALRE 306

Query: 341 LELLDAEN 348
           +      +
Sbjct: 307 ITSAPGYS 314

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 71.5 bits (175), Expect = 3e-13
 Identities = 73/444 (16%), Positives = 133/444 (29%), Gaps = 91/444 (20%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L++S  ++TS+   P     +  L      +                  L  LP+ L  L
Sbjct: 86  LEVSGNQLTSL---PVLPPGLLELSIFSNPLTH----------------LPALPSGLCKL 126

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
                   +LP    P  L +L++  +++  +        +L  +  +N+Q L  +P   
Sbjct: 127 WIFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLPM-- 178

Query: 121 ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
               L+  ++ +   L  +P+       L               +N              
Sbjct: 179 LPSGLQELSVSDN-QLASLPTLPSELYKLWAY------------NN-------------- 211

Query: 181 FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240
             LT  P +   + +LI+S   +  +P      + L++L ++   RL  L      L SL
Sbjct: 212 -RLTSLPALPSGLKELIVSGNRLTSLPVLP---SELKELMVSGN-RLTSLPMLPSGLLSL 266

Query: 241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQL 300
            V      ++L R PE L  + S   ++LE   ++E              Y G      +
Sbjct: 267 SV----YRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSG-----PI 317

Query: 301 NLSRNDSESLPASITQLSQLRSLHLKD--------CSMLSSLPELPQSLELLDAEN---- 348
                   S P     L    +  L                  +   +       +    
Sbjct: 318 IRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSE 377

Query: 349 ----CKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSAC---VKFVFSN--CLKLNE 399
                K   F  +I S L ++      +A     A    S+C   V F       ++L  
Sbjct: 378 TENFIKDAGFKAQISSWLAQLAEDEALRANTFAMATEATSSCEDRVTFFLHQMKNVQLVH 437

Query: 400 KANNEILADSQRWIQHMAIATFRL 423
            A      +    +       FRL
Sbjct: 438 NAEKGQYDNDLAALVATGREMFRL 461

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 295 SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQF 354
           +    LN+  +   +LP  +   + + +L + D + L+SLP LP  L  L+     QL  
Sbjct: 40  NGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNN-LTSLPALPPELRTLEVSGN-QLTS 95

Query: 355 IPEILSGLEE 364
           +P +  GL E
Sbjct: 96  LPVLPPGLLE 105

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 93.4 bits (232), Expect = 7e-20
 Identities = 44/307 (14%), Positives = 98/307 (31%), Gaps = 42/307 (13%)

Query: 101 KLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS 159
           ++  + +       R+PD + +   L+  +     + T       +      +  E    
Sbjct: 324 RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMSEERKHR 382

Query: 160 LRSFPSNLHFMSPIKIDFSSCFN--LTEFPQISG---------NITDLILSETAIQEVPS 208
           +R     +      +++ S      +   P++             T +      I  +  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 209 SIECLTNLEKLYINRCM-------------------RLKRLSTSICKLKSLHVLVLDDCS 249
           +I+ LT L+ +Y                        + +    S   LK L  + L +C 
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP 502

Query: 250 KLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES 309
            + + P+ L  +  ++ +++            A+   L D    G  ++   +  N+ E 
Sbjct: 503 NMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 310 LPAS--ITQLSQLRSLHLKDCSMLSSLPELPQ--SLELLDAENCKQLQFIPE----ILSG 361
            PAS  + ++ +L  L       +  L        L  L  +   Q++ IPE        
Sbjct: 563 FPASASLQKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQ 620

Query: 362 LEEVDAS 368
           +E +  S
Sbjct: 621 VEGLGFS 627

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 83.4 bits (206), Expect = 8e-17
 Identities = 48/406 (11%), Positives = 121/406 (29%), Gaps = 82/406 (20%)

Query: 3   LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNG-VPIMISKVHLDQGLEYL---PNELR 58
            +            +++N+ +L  ++ Y   +   +P  +  +     L+ L    N   
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL---PELQSLNIACNRGI 528

Query: 59  YLHWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQI--WEGKKRAFKLKYVDIHNSQYLIR 115
                +     L  D +    +    + Y+ + +       ++  KL  +D  +++ +  
Sbjct: 529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRH 587

Query: 116 MPDLSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK 174
           +        L    L     +  +P       + +  L F   K L+  P+  +      
Sbjct: 588 LEAFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNA----- 640

Query: 175 IDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIEC------LTNLEKLYINRCMRLK 228
               S + +            +  S   I     +I C        N   + ++    ++
Sbjct: 641 ---KSVYVMGS----------VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQ 686

Query: 229 RLSTSIC-KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL 287
           +  T +      +  ++L +   +   PE                ++     ++ N   L
Sbjct: 687 KFPTELFATGSPISTIILSNN-LMTSIPE---------------NSLKPKDGNYKNTYLL 730

Query: 288 KDLYIGG---------------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLS 332
             + +                   L  +++S N   S P      SQL++  ++      
Sbjct: 731 TTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAE 790

Query: 333 S---LPELP------QSLELLDAENCKQLQFIP-EILSGLEEVDAS 368
               L + P       SL  L   +   ++ +  ++   L  +D +
Sbjct: 791 GNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLTPQLYILDIA 835

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 24/181 (13%), Positives = 57/181 (31%), Gaps = 31/181 (17%)

Query: 209 SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS------------------- 249
            ++    +  L +       R+  +I +L  L VL     S                   
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSE 377

Query: 250 ------KLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLS 303
                 ++      L+  + +    L + AI   P     ++ +K          Q+   
Sbjct: 378 ERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP----EMKPIKKDSRISLKDTQIGNL 433

Query: 304 RNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLE 363
            N    +  +I +L++L+ ++  +    +         E  +++  KQ +      S L+
Sbjct: 434 TNRITFISKAIQRLTKLQIIYFANSP-FTYDNI-AVDWEDANSDYAKQYENEELSWSNLK 491

Query: 364 E 364
           +
Sbjct: 492 D 492

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 84.7 bits (210), Expect = 1e-18
 Identities = 35/213 (16%), Positives = 83/213 (38%), Gaps = 28/213 (13%)

Query: 179 SCFNLTEFPQISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSI-CK 236
           +C ++   P +  +   L L ET ++ +PS +   L N+ ++Y++  + L++L +     
Sbjct: 19  TCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYN 78

Query: 237 LKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITELP--SSFANLEGLKDLYIG 293
           L  +  + + +   L     + L+++  +K + +  T +   P  +   + +    L I 
Sbjct: 79  LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEIT 138

Query: 294 G----------------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE- 336
                            +    L L  N   S+       ++L +++L     L+ + + 
Sbjct: 139 DNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKD 198

Query: 337 ----LPQSLELLDAENCKQLQFIP-EILSGLEE 364
               +     LLD      +  +P + L  L+E
Sbjct: 199 AFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKE 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 87.9 bits (218), Expect = 2e-18
 Identities = 66/409 (16%), Positives = 141/409 (34%), Gaps = 46/409 (11%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           LDLS   ++S  LS   F  + +L++L       N        + +      L N L+ L
Sbjct: 79  LDLSDNHLSS--LSSSWFGPLSSLKYLNLM---GNP----YQTLGVTSLFPNLTN-LQTL 128

Query: 61  H-WHEYPSKALP-FDFEP-ENLVKLNLPYSKVVQIWEGKKRAF-KLKYVDIHNSQ-YLIR 115
              +      +   DF    +L +L +    +        ++   + ++ +H S+   + 
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 116 MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175
                   ++    L++        S +      S +     +       + + +  +  
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248

Query: 176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC 235
                  +         + D   SE+ +      +E +  + +L+I +      LST   
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV-TIRRLHIPQFYLFYDLSTVYS 307

Query: 236 KLKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITEL----PSSFANLEGLKDL 290
            L+ +  + +++ SK+   P    + ++S++ + L    + E      +       L+ L
Sbjct: 308 LLEKVKRITVEN-SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366

Query: 291 YIGG----------------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSL 334
            +                   +L  L++SRN    +P S     ++R L+L    +    
Sbjct: 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK 426

Query: 335 PELPQSLELLDAENCKQLQFIPEILSGLEEVDAS-----VLEKATFLNS 378
             +PQ+LE+LD  N   L      L  L+E+  S      L  A+    
Sbjct: 427 TCIPQTLEVLDVSNN-NLDSFSLFLPRLQELYISRNKLKTLPDASLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 57/377 (15%), Positives = 130/377 (34%), Gaps = 59/377 (15%)

Query: 3   LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW 62
           L++  ++  +   Q+  ++ ++  L  ++ E   +  + + +     + YL  ELR  + 
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADIL--SSVRYL--ELRDTNL 208

Query: 63  HEYPSKALPFDFEPENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQYL---- 113
             +    LP D     + KL    S +      ++ +  +   +L  V+  +        
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGD 268

Query: 114 ---IRMPDLSETPNLERTNLK----NCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPS 165
                   +SE   +E   ++        L    S+V      +  +  E  K +   P 
Sbjct: 269 FNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPC 327

Query: 166 N-LHFMSPIK-IDFSSC------FNLTEFPQISGNITDLILSE---TAIQEVPSSIECLT 214
           +    +  ++ +D S           +       ++  L+LS+    ++Q+    +  L 
Sbjct: 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387

Query: 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAI 274
           NL  L I+R      +  S    + +  L L     +      + +  +++ + +    +
Sbjct: 388 NLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSST-GIRVVKTCIPQ--TLEVLDVSNNNL 443

Query: 275 TELPSSFANLEGLKDLYIGG------------SSLRQLNLSRNDSESLPASITQ-LSQLR 321
                    L  L++LYI                L  + +SRN  +S+P  I   L+ L+
Sbjct: 444 DSFSL---FLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500

Query: 322 SLHLK------DCSMLS 332
            + L        C  + 
Sbjct: 501 KIWLHTNPWDCSCPRID 517

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 37/191 (19%), Positives = 65/191 (34%), Gaps = 45/191 (23%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICK-LK 238
           + T  P  ++  +  L LS   I  +    +    NL+ L +    R+  +       L 
Sbjct: 16  SFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLG 74

Query: 239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGGSSL 297
           SL  L L D                          ++ L SS F  L          SSL
Sbjct: 75  SLEHLDLSDNH------------------------LSSLSSSWFGPL----------SSL 100

Query: 298 RQLNLSRNDSESLPAS--ITQLSQLRSLHLKDCSMLSSLPELP----QSLELLDAENCKQ 351
           + LNL  N  ++L  +     L+ L++L + +    S +  +      SL  L+ +    
Sbjct: 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160

Query: 352 LQFIPEILSGL 362
             +  + L  +
Sbjct: 161 RNYQSQSLKSI 171

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.3 bits (216), Expect = 3e-18
 Identities = 47/192 (24%), Positives = 71/192 (36%), Gaps = 23/192 (11%)

Query: 190 SGNITDLI--LSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLST-SICKLKSLHVLVL 245
             N   L        I    +         EK  +    R + +S    C +     L L
Sbjct: 7   INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQL 66

Query: 246 DDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY---------IGGSS 296
           +    L   P+ L     +  + + + A+  LP   A+LE L                 S
Sbjct: 67  NRL-NLSSLPDNLPP--QITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPA--S 121

Query: 297 LRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIP 356
           L+ L++  N    LP     L     ++  +   L+ LPELP SLE+L   N  QL F+P
Sbjct: 122 LKHLDVDNNQLTMLPELPALL---EYINADNNQ-LTMLPELPTSLEVLSVRNN-QLTFLP 176

Query: 357 EILSGLEEVDAS 368
           E+   LE +D S
Sbjct: 177 ELPESLEALDVS 188

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.8 bits (212), Expect = 1e-17
 Identities = 36/242 (14%), Positives = 80/242 (33%), Gaps = 24/242 (9%)

Query: 113 LIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
            + +             L    NL+ +P ++     +++L       L S P     +  
Sbjct: 49  AVSLLKECLINQFSELQLNRL-NLSSLPDNL--PPQITVLEITQNA-LISLPELPASLE- 103

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST 232
             +D      L+  P++  ++  L +    +  +P        LE +  +   +L  L  
Sbjct: 104 -YLDACDN-RLSTLPELPASLKHLDVDNNQLTMLPELP---ALLEYINADNN-QLTMLPE 157

Query: 233 SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292
               L+ L V      ++L   PE+ E +E+   + +    +  LP+        ++   
Sbjct: 158 LPTSLEVLSV----RNNQLTFLPELPESLEA---LDVSTNLLESLPAVPVRNHHSEET-- 208

Query: 293 GGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQL 352
                       N    +P +I  L    ++ L+D  + S + E           +  ++
Sbjct: 209 ----EIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264

Query: 353 QF 354
            F
Sbjct: 265 YF 266

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 4e-15
 Identities = 43/238 (18%), Positives = 79/238 (33%), Gaps = 36/238 (15%)

Query: 119 LSETPNLERTNLKNC--INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKID 176
            S     E+  L          +       N  S L       L S P NL       ++
Sbjct: 30  FSAWDKWEKQALPGENRNEAVSLLKECL-INQFSELQLNRLN-LSSLPDNL-PPQITVLE 86

Query: 177 FSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICK 236
            +    L   P++  ++  L   +  +  +P       +L+ L ++   +L  L      
Sbjct: 87  ITQN-ALISLPELPASLEYLDACDNRLSTLPELP---ASLKHLDVDNN-QLTMLPELPAL 141

Query: 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS 296
           L+ ++     D ++L   PE+   +E    +S+    +T LP                 S
Sbjct: 142 LEYINA----DNNQLTMLPELPTSLEV---LSVRNNQLTFLPELP-------------ES 181

Query: 297 LRQLNLSRNDSESLPASITQLSQLRSLHLK-DCS--MLSSLPE---LPQSLELLDAEN 348
           L  L++S N  ESLPA   +        +   C    ++ +PE          +  E+
Sbjct: 182 LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILED 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 85.5 bits (212), Expect = 1e-17
 Identities = 73/420 (17%), Positives = 132/420 (31%), Gaps = 68/420 (16%)

Query: 1   MFLDLSKITSIHLS--------PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEY 52
            F  LS +  +                ++  L+ L      HN    +I    L +    
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HN----LIQSFKLPEYFSN 147

Query: 53  LPNELRYLH-----WHEYPSKALPFDFE-PENLVKLNLPYSKVVQIWEGKKRAFKLKYVD 106
           L N L +L              L    + P   + L+L  + +  I  G  +  +L  + 
Sbjct: 148 LTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 107 IHNSQYLIRMPD--LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP 164
           + N+   + +    +     LE   L              + + L  LC    +  R   
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266

Query: 165 SNLHFMSPIKIDFSSCFNLTEFPQISGNITD------------LILSETAIQEVPSSIEC 212
            +  ++  I   F+   N++ F  +S  I              L L      + P+    
Sbjct: 267 LDY-YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--K 323

Query: 213 LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDC--SKLERFPEILEKMESVKCISLE 270
           L +L++L      +     + +  L SL  L L     S      +      S+K + L 
Sbjct: 324 LKSLKRLTFTSN-KGGNAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 271 RTAITELPSSFANLEGLKDLYIGG---------------SSLRQLNLSRNDSESLPASI- 314
              +  + S+F  LE L+ L                    +L  L++S   +      I 
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 315 TQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQFIPE----ILSGLEEVD 366
             LS L  L +   S   +         ++L  LD   C QL+ +       LS L+ ++
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 71.7 bits (176), Expect = 3e-13
 Identities = 73/377 (19%), Positives = 120/377 (31%), Gaps = 63/377 (16%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLD--QGLEYLPNELR 58
           LDLS   +  I   P AF  +  L  L      +N   + + K  +    GLE     L 
Sbjct: 182 LDLSLNPMNFI--QPGAFKEI-RLHKLTLR---NNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 59  YLHWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYL 113
                    K      E   NL       + +    +     F     +    + +   +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-I 294

Query: 114 IRMPDLSETPNLERTNLKNC-------INLTCVPSSVQNFNHLSML-CFEGCKSLRSFPS 165
            R+ D S     +   L NC       + L  +       N            SL     
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFL-- 352

Query: 166 NLHF--MSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINR 223
           +L    +S       S F  T       ++  L LS   +  + S+   L  LE L    
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTT-------SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH 405

Query: 224 CMRLKRLS--TSICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITE--LP 278
              LK++S  +    L++L  L +            I   + S++ + +   +  E  LP
Sbjct: 406 S-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 279 SSFANLEGLKDLYIGG--------------SSLRQLNLSRNDSESLPASI-TQLSQLRSL 323
             F  L  L  L +                SSL+ LN++ N  +S+P  I  +L+ L+ +
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKI 523

Query: 324 HLK------DCSMLSSL 334
            L        C  +  L
Sbjct: 524 WLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 3e-11
 Identities = 38/189 (20%), Positives = 71/189 (37%), Gaps = 25/189 (13%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRL-STSICKLK 238
           N  + P  +  +  +L LS   ++ + S S      L+ L ++RC  ++ +   +   L 
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLS 76

Query: 239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSL 297
            L  L+L               + S++ +    T +  L +    +L           +L
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL----------KTL 126

Query: 298 RQLNLSRN--DSESLPASITQLSQLRSLHLKD-------CSMLSSLPELPQSLELLDAEN 348
           ++LN++ N   S  LP   + L+ L  L L         C+ L  L ++P     LD   
Sbjct: 127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 349 CKQLQFIPE 357
              + FI  
Sbjct: 187 N-PMNFIQP 194

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 71/411 (17%), Positives = 143/411 (34%), Gaps = 70/411 (17%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            LDLS  +I +I     A+ ++ +L  L       N     I  +        L + L+ 
Sbjct: 56  VLDLSRCEIQTIE--DGAYQSLSHLSTLILT---GN----PIQSLA-LGAFSGLSS-LQK 104

Query: 60  LHWHEYPSKALPFD-FEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQ-Y 112
           L   E    +L        + L +LN+ ++ +      +   F     L+++D+ +++  
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE--YFSNLTNLEHLDLSSNKIQ 162

Query: 113 LIRMPDLSETPNLERTNLK---NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP----- 164
            I   DL     +   NL    +   +  +         L  L         +       
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ 222

Query: 165 --SNLHFMSPIKIDFSSCFNLTEFPQ-ISGNITDLILSETAIQ-------EVPSSIECLT 214
             + L     +  +F +  NL +F +     + +L + E  +        ++     CLT
Sbjct: 223 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282

Query: 215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAI 274
           N+    +     ++R+            L L +C    +FP +  K++S+K ++      
Sbjct: 283 NVSSFSLVSV-TIERVK-DFSYNFGWQHLELVNCK-FGQFPTL--KLKSLKRLTFTSNKG 337

Query: 275 TELPSSFANLEGLKDLYIGG----------------SSLRQLNLSRNDSESLPASITQLS 318
                S  +L  L+ L +                  +SL+ L+LS N   ++ ++   L 
Sbjct: 338 GNAF-SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 319 QLRSLHLKDCSMLSSLPEL-----PQSLELLDAENCKQLQFIP-EILSGLE 363
           QL  L  +  + L  + E       ++L  LD  +    +     I +GL 
Sbjct: 397 QLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLS 445

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 64/397 (16%), Positives = 122/397 (30%), Gaps = 69/397 (17%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            LDLS   +  +     +F + P L+ L             I  +  D   + L + L  
Sbjct: 32  NLDLSFNPLRHLG--SYSFFSFPELQVLDL---SRCE----IQTIE-DGAYQSLSH-LST 80

Query: 60  LHWHEYPSKALP---FDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQ- 111
           L     P ++L    F     +L KL    + +  +             LK +++ ++  
Sbjct: 81  LILTGNPIQSLALGAFSG-LSSLQKLVAVETNLASLENF---PIGHLKTLKELNVAHNLI 136

Query: 112 -YLIRMPDLSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFE---GCKSLRSFPSN 166
                    S   NLE  +L +   +  +  +  +  + + +L          +      
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG 195

Query: 167 LHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMR 226
                     F     L +   +  N   L + +T IQ +      +  L          
Sbjct: 196 A---------FKE-IRLHKL-TLRNNFDSLNVMKTCIQGLAGLE--VHRLVLGEFRNEGN 242

Query: 227 LKRLSTSICK-LKSLHVLVLDDCS---KLERFPEILEKMESVKCISLERTAITELPSSFA 282
           L++   S  + L +L +           L+   ++   + +V   SL    I  +   F+
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFS 301

Query: 283 NLEGLKDLYIGG-----------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSML 331
              G + L +              SL++L  + N   +  + +  L  L  L L     L
Sbjct: 302 YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV-DLPSLEFLDLSRNG-L 359

Query: 332 SSLPELPQ------SLELLDAENCKQLQFIPEILSGL 362
           S      Q      SL+ LD      +  +     GL
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGL 395

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 25/137 (18%)

Query: 234 ICKLKSLHVLVLDDCS--KLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDL 290
           +  + ++       C      + P+ L    S K + L    +  L S SF +       
Sbjct: 4   VEVVPNITY----QCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSF------ 51

Query: 291 YIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCSMLSSLPEL----PQSLELLD 345
                 L+ L+LSR + +++   +   LS L +L L     + SL         SL+ L 
Sbjct: 52  ----PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLV 106

Query: 346 AENCKQLQFIPEILSGL 362
           A            +  L
Sbjct: 107 AVETNLASLENFPIGHL 123

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 81.8 bits (203), Expect = 5e-17
 Identities = 65/315 (20%), Positives = 125/315 (39%), Gaps = 40/315 (12%)

Query: 77  ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINL 136
           E++ KL +   KV  I +G +    L+Y++++ +Q +  +  LS    L    +    N 
Sbjct: 44  ESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQ-ITDISPLSNLVKLTNLYIGT--NK 99

Query: 137 TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISG--NIT 194
               S++QN  +L  L       +       +      ++  +  NL++   +S    + 
Sbjct: 100 ITDISALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLN 158

Query: 195 DLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERF 254
            L ++E+ +++V   I  LT+L  L +N   +++ +S  +  L SLH        ++   
Sbjct: 159 YLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDIS-PLASLTSLHYFTAYVN-QITDI 214

Query: 255 PEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG------------SSLRQLNL 302
              +  M  +  + +    IT+L    ANL  L  L IG             + L+ LN+
Sbjct: 215 TP-VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINAVKDLTKLKMLNV 272

Query: 303 SRNDSESLPASITQLSQLRSLHLKDC-------SMLSSLPELPQSLELLDAENCKQLQFI 355
             N    +   +  LSQL SL L +         ++  L     +L  L       +  I
Sbjct: 273 GSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLT----NLTTLFLSQN-HITDI 326

Query: 356 PEI--LSGLEEVDAS 368
             +  LS ++  D +
Sbjct: 327 RPLASLSKMDSADFA 341

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.8 bits (177), Expect = 1e-13
 Identities = 33/193 (17%), Positives = 76/193 (39%), Gaps = 24/193 (12%)

Query: 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL 251
                +L + ++ +V +  E L ++ KL +    ++  +   I  L +L  L L+   ++
Sbjct: 23  EGIRAVLQKASVTDVVT-QEELESITKLVVAGE-KVASIQ-GIEYLTNLEYLNLNGN-QI 78

Query: 252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG------------SSLRQ 299
                 L  +  +  + +    IT++ +   NL  L++LY+              + +  
Sbjct: 79  TDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISPLANLTKMYS 136

Query: 300 LNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQ--SLELLDAENCKQLQFIPE 357
           LNL  N + S  + ++ ++ L  L + +   +  +  +     L  L      Q++ I  
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDLYSLSLNYN-QIEDISP 194

Query: 358 I--LSGLEEVDAS 368
           +  L+ L    A 
Sbjct: 195 LASLTSLHYFTAY 207

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 50/350 (14%), Positives = 111/350 (31%), Gaps = 59/350 (16%)

Query: 3   LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW 62
             L K +   +       + ++  L             ++ +   QG+EYL N L YL+ 
Sbjct: 27  AVLQKASVTDVVT--QEELESITKLVVA---GEK----VASI---QGIEYLTN-LEYLNL 73

Query: 63  HEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSET 122
           +      +        L  L +  +K+  I    +    L+ + ++    +  +  L+  
Sbjct: 74  NGNQITDISPLSNLVKLTNLYIGTNKITDI-SALQNLTNLRELYLNEDN-ISDISPLANL 131

Query: 123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP--SNLHFMSPIKIDFSSC 180
             +   NL    +     S + N   L+ L     K ++     +NL  +    +  +  
Sbjct: 132 TKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESK-VKDVTPIANLTDL--YSLSLNYN 187

Query: 181 FNLTEFPQISG--NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK 238
             + +   ++   ++         I ++   +  +T L  L I    ++  LS  +  L 
Sbjct: 188 -QIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN-KITDLS-PLANLS 243

Query: 239 SLHVLVLDD-----------CSKLERF---------PEILEKMESVKCISLERTAITEL- 277
            L  L +              +KL+             +L  +  +  + L    +    
Sbjct: 244 QLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED 303

Query: 278 PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKD 327
                 L  L  L+          LS+N    +   +  LS++ S    +
Sbjct: 304 MEVIGGLTNLTTLF----------LSQNHITDIRP-LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.4 bits (98), Expect = 6e-04
 Identities = 31/256 (12%), Positives = 82/256 (32%), Gaps = 51/256 (19%)

Query: 2   FLDLSKITSIHLS-------PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLP 54
             +L+K+ S++L            +NM  L +L       +     +  V     +  L 
Sbjct: 128 LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT---ESK----VKDV---TPIANLT 177

Query: 55  NELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLI 114
           + L  L  +    + +       +L       +++  I        +L  + I N++ + 
Sbjct: 178 D-LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI-TPVANMTRLNSLKIGNNK-IT 234

Query: 115 RMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK 174
            +  L+    L    +     ++ + +             +    L+             
Sbjct: 235 DLSPLANLSQLTWLEIGTN-QISDINA------------VKDLTKLKM------------ 269

Query: 175 IDFSSCFNLTEFPQISG--NITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLS 231
           ++  S   +++   ++    +  L L+   +  E    I  LTNL  L++++   +  + 
Sbjct: 270 LNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIR 327

Query: 232 TSICKLKSLHVLVLDD 247
             +  L  +      +
Sbjct: 328 -PLASLSKMDSADFAN 342

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 47/314 (14%), Positives = 92/314 (29%), Gaps = 64/314 (20%)

Query: 117 PDLSETPNLER----TNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS---NLHF 169
             + +   LE     ++ +        P  +                 ++F        F
Sbjct: 99  DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 170 MSPIKIDFSSCFNLTEFPQISGN---ITDLILSETAIQEVPSSIECLTNLEKLYINR--- 223
              IK   +S        + S      T +      I  V  ++  LT L + Y+     
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPF 218

Query: 224 ----------------CMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCI 267
                             + K        LK L  + + +C  L + P  L+ +  ++ I
Sbjct: 219 VAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 268 SLERTAITELP---------SSFANLEGLKDLYIGG---------------SSLRQLNLS 303
           ++                  +     E ++ +YIG                  L  L   
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 304 RNDSESLPASITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQFIPEI- 358
            N  E    +     +L SL+L     ++ +P       + +E L   +  +L++IP I 
Sbjct: 339 YNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHN-KLKYIPNIF 396

Query: 359 ----LSGLEEVDAS 368
               +S +  +D S
Sbjct: 397 DAKSVSVMSAIDFS 410

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 45/272 (16%), Positives = 83/272 (30%), Gaps = 34/272 (12%)

Query: 117 PDLSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFM---SP 172
           P       L   NL     +T +P++       +  L F   K L+  P+          
Sbjct: 347 PAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVM 404

Query: 173 IKIDFS-------SCFNLTEFPQISG---NITDLILSETAIQEVP-SSIECLTNLEKLYI 221
             IDFS          N            N++ + LS   I + P       + L  + +
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 222 NRCM-------RLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE--KMESVKCISLERT 272
              M        LK  + +      L  + L    KL +  +      +  +  I L   
Sbjct: 465 MGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRND-SESLPASITQLSQLRSLHLKDCSML 331
           + ++ P+   N   LK   I      Q +   N      P  IT    L  L +     +
Sbjct: 524 SFSKFPTQPLNSSTLKGFGI----RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-I 578

Query: 332 SSLP-ELPQSLELLDAENCKQLQFIPEILSGL 362
             +  ++  ++ +LD ++   +      +   
Sbjct: 579 RKVNEKITPNISVLDIKDNPNISIDLSYVCPY 610

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 6e-13
 Identities = 26/175 (14%), Positives = 58/175 (33%), Gaps = 8/175 (4%)

Query: 190 SGNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSICK-LKSLHVLVLDD 247
           +G +T L L        VP +I  LT LE L +              K + +        
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 248 CSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDS 307
             ++      ++         L +  I   P      + +K          Q+    N+ 
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQ----KSIKKSSRITLKDTQIGQLSNNI 195

Query: 308 ESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGL 362
             +  ++ +L++LR  ++ +   ++      ++ E  ++E  +Q +        L
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNSPFVAENI--CEAWENENSEYAQQYKTEDLKWDNL 248

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 31/252 (12%), Positives = 73/252 (28%), Gaps = 51/252 (20%)

Query: 119 LSETPNLERTNLKNCINLTCVPSSVQ--NFNHLSMLCFEGCKSLRSFPSNLHFMSPIKID 176
              T  +E  +  +   L  +P+     + + +S + F   + + S         P+   
Sbjct: 373 CGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKN--FDPLDPT 428

Query: 177 FSSCFNLTEF-----------PQISGNITDLI-----------LSETAIQEVPSSIECLT 214
                N++              ++    + L            + + ++++   + +   
Sbjct: 429 PFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488

Query: 215 NLEKLYINRCMRLKRLSTSI--CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272
            L  + +    +L +LS       L  L  + L       +FP       ++K   +   
Sbjct: 489 LLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQ 546

Query: 273 AI-------TELPSSFANLEGLKDLYIGG-----------SSLRQLNLSRNDSESLPAS- 313
                     E P        L  L IG             ++  L++  N + S+  S 
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPNISIDLSY 606

Query: 314 ITQLSQLRSLHL 325
           +    +     L
Sbjct: 607 VCPYIEAGMYML 618

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 81.6 bits (202), Expect = 3e-16
 Identities = 61/388 (15%), Positives = 118/388 (30%), Gaps = 52/388 (13%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLD--QGLEYLPNELR 58
           L+++   I S  L P  F+N+ NL  +      +N     I  + ++  Q L   P    
Sbjct: 133 LNVAHNFIHSCKL-PAYFSNLTNLVHVDLS---YN----YIQTITVNDLQFLRENPQVNL 184

Query: 59  YLHWHEYPSKALPFD-FEPENLVKLNLPYSKVVQIWEGKKRAFK----LKYVDIHNSQYL 113
            L     P   +    F+   L +L L  +         K   +    L    +   ++ 
Sbjct: 185 SLDMSLNPIDFIQDQAFQGIKLHELTLRGNF--NSSNIMKTCLQNLAGLHVHRLILGEFK 242

Query: 114 ----IRMPDLSETPNLERTNLK----NCINLTCV-PSSVQNFNHLSMLCFEGCKSLRSFP 164
               + + + S    L    +        N             ++S +   G   ++   
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS-IKYLE 301

Query: 165 SNLHFMSPIKIDFSSCFNLTEFPQIS-GNITDLILSETAIQEVPSSIECLTNLEKLYI-- 221
                     +    C  L +FP +    +  L L+      +      L +L  L +  
Sbjct: 302 DVPKHFKWQSLSIIRC-QLKQFPTLDLPFLKSLTLTMNKG-SISFKKVALPSLSYLDLSR 359

Query: 222 NRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP--S 279
           N        S S     SL  L L               +E ++ +  + + +  +   S
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 280 SFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE-- 336
           +F +L            L  L++S  +++     I   L+ L +L +   S   +     
Sbjct: 419 AFLSL----------EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

Query: 337 --LPQSLELLDAENCKQLQFIPEILSGL 362
                +L  LD   C+  Q    +   L
Sbjct: 469 FANTTNLTFLDLSKCQLEQISWGVFDTL 496

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 69.7 bits (171), Expect = 1e-12
 Identities = 41/214 (19%), Positives = 76/214 (35%), Gaps = 25/214 (11%)

Query: 162 SFPSNLHFMSPIKIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKL 219
           S    +  +  I         L++ P  I  +  ++ LS   ++ +   S    + L+ L
Sbjct: 3   SLNPCIEVVPNITYQCMDQ-KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWL 61

Query: 220 YINRCMRLKRL-STSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP 278
            ++RC  ++ +   +   L  L  L+L         P     + S++ +    T +  L 
Sbjct: 62  DLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120

Query: 279 S-SFANLEGLKDLYIGGSSLRQLNLSRN--DSESLPASITQLSQLRSLHLKDC------- 328
           S     L           +L++LN++ N   S  LPA  + L+ L  + L          
Sbjct: 121 SFPIGQL----------ITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170

Query: 329 SMLSSLPELPQSLELLDAENCKQLQFIPEILSGL 362
           + L  L E PQ    LD           +   G+
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI 204

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 1e-11
 Identities = 75/411 (18%), Positives = 129/411 (31%), Gaps = 73/411 (17%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
           +LDLS  +I +I    +A+  + +L  L       N     I           L + L  
Sbjct: 60  WLDLSRCEIETIE--DKAWHGLHHLSNLILT---GNP----IQSFS-PGSFSGLTS-LEN 108

Query: 60  LHWHEYPSKALPFD-FEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHN---- 109
           L   E    +L          L KLN+ ++ +          F     L +VD+      
Sbjct: 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA--YFSNLTNLVHVDLSYNYIQ 166

Query: 110 ---SQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP-- 164
                 L  + +          ++     +  +         L  L   G  +  +    
Sbjct: 167 TITVNDLQFLREN--PQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 165 -----SNLHFMSPIKIDFSSCFNLTEFPQ------ISGNITDLILSETAIQEV-PSSIEC 212
                + LH    I  +F    NL  F            I +  L+ T           C
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

Query: 213 LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT 272
           L N+  + +     +K L   + K      L +  C +L++FP +   +  +K ++L   
Sbjct: 284 LANVSAMSLAGV-SIKYLE-DVPKHFKWQSLSIIRC-QLKQFPTL--DLPFLKSLTLTMN 338

Query: 273 AITELPSSFANLEGLKDLYI----------------GGSSLRQLNLSRNDSESLPASITQ 316
             + +      L  L  L +                G +SLR L+LS N +  + A+   
Sbjct: 339 KGS-ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG 397

Query: 317 LSQLRSLHLKDCSMLSSLPELP-----QSLELLDAENCKQLQFIPEILSGL 362
           L +L+ L  +  S L  + E       + L  LD            I  GL
Sbjct: 398 LEELQHLDFQH-STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 52/331 (15%), Positives = 104/331 (31%), Gaps = 52/331 (15%)

Query: 3   LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW 62
             L+           F  + N+  +         +  +       +  + L   +     
Sbjct: 266 FRLTYTNDFSDDIVKFHCLANVSAMSL---AGVSIKYLEDVPKHFK-WQSL--SIIRCQL 319

Query: 63  HEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDI-HNSQYLIRMPDLSE 121
            ++P+  LP       L  L L  +K    ++       L Y+D+  N+         S+
Sbjct: 320 KQFPTLDLP------FLKSLTLTMNKGSISFKKVA-LPSLSYLDLSRNALSFSGCCSYSD 372

Query: 122 --TPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
             T +L   +L +      + ++      L  L F+         S L  ++     F S
Sbjct: 373 LGTNSLRHLDL-SFNGAIIMSANFMGLEELQHLDFQH--------STLKRVTEFSA-FLS 422

Query: 180 CFNLTEFPQISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI-CKL 237
              L            L +S T  +     I   LT+L  L +          +++    
Sbjct: 423 LEKLLY----------LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472

Query: 238 KSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGGS 295
            +L  L L  C +LE+    + + +  ++ +++    +  L  S +  L           
Sbjct: 473 TNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL----------Y 521

Query: 296 SLRQLNLSRNDSESLPASI-TQLSQLRSLHL 325
           SL  L+ S N  E+    +      L   +L
Sbjct: 522 SLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.0 bits (146), Expect = 1e-09
 Identities = 62/376 (16%), Positives = 113/376 (30%), Gaps = 87/376 (23%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            +DLS   +  +     +F+N   L++L             I  +               
Sbjct: 36  NIDLSFNPLKILK--SYSFSNFSELQWLDL---SRCE----IETIE--------DKAWHG 78

Query: 60  LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIR 115
           LH                +L  L L  +    I      +F     L+ +    ++ L  
Sbjct: 79  LH----------------HLSNLILTGN---PIQSFSPGSFSGLTSLENLVAVETK-LAS 118

Query: 116 MPD--LSETPNLERTNL-KNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           +    + +   L++ N+  N I+   +P+   N  +L  +             +L +   
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV-------------DLSY--- 162

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRL-S 231
             I   +  +L    +       L +S   I  +         L +L +        +  
Sbjct: 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

Query: 232 TSICKLKSLHVLVLD-----DCSKLERFPE-ILEKME--SVKCISLERTAITEL-PSSFA 282
           T +  L  LHV  L      D   LE F   I+E +   ++    L  T         F 
Sbjct: 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH 282

Query: 283 NLEGLKDLYIGG------------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330
            L  +  + + G               + L++ R   +  P     L  L+SL L     
Sbjct: 283 CLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKG 340

Query: 331 LSSLPELP-QSLELLD 345
             S  ++   SL  LD
Sbjct: 341 SISFKKVALPSLSYLD 356

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 35/164 (21%)

Query: 230 LSTSICKLKSLHVLVLDDCS--KLERFPEILEKMESVKCISLERTAITELP-SSFANLEG 286
           L+  I  + ++       C   KL + P+ +    S K I L    +  L   SF+N   
Sbjct: 4   LNPCIEVVPNITY----QCMDQKLSKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 287 LKDLYIGG--------------SSLRQLNLSRND-SESLPASITQLSQLRSLHLKDCSML 331
           L+ L +                  L  L L+ N      P S + L+ L +L   +   L
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK-L 116

Query: 332 SSLPELP----QSLELLDAENCKQLQFIPEI-----LSGLEEVD 366
           +SL   P     +L+ L+  +   +           L+ L  VD
Sbjct: 117 ASLESFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVD 159

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 68/363 (18%), Positives = 122/363 (33%), Gaps = 94/363 (25%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           LDL   +I +++     FA+ P+L  L                  L++      N +  +
Sbjct: 37  LDLGKNRIKTLN--QDEFASFPHLEEL-----------------ELNE------NIVSAV 71

Query: 61  HWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIR 115
                     P  F    NL  L L  +++  I       F     L  +DI  ++ ++ 
Sbjct: 72  E---------PGAFNNLFNLRTLGLRSNRLKLI---PLGVFTGLSNLTKLDISENK-IVI 118

Query: 116 MPD--LSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           + D    +  NL+   + +  +L  +        N L  L  E C  L S P+       
Sbjct: 119 LLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEA----- 171

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLS 231
                S    L            L L    I  +     + L  L+ L I+    L  ++
Sbjct: 172 ----LSHLHGLIV----------LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMT 217

Query: 232 TSICKLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPS-SFANLEGLKD 289
            +     +L  L +  C  L   P   +  +  ++ ++L    I+ +       L  L++
Sbjct: 218 PNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276

Query: 290 LYIGG--------------SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK------DC 328
           + + G              + LR LN+S N   +L  S+   +  L +L L       DC
Sbjct: 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDC 336

Query: 329 SML 331
            +L
Sbjct: 337 RLL 339

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 35/234 (14%), Positives = 76/234 (32%), Gaps = 50/234 (21%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCM-------------R 226
                P+ I      L L +  I+ +         +LE+L +N  +              
Sbjct: 22  RFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 227 LKRLSTSICKLKSLHVLVLDDCSKLERF-----------PEILEKMESVKCISLERTAIT 275
           L+ L     +LK + + V    S L +              + + + ++K + +    + 
Sbjct: 82  LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 276 ELPS-SFANLEGLKDLYIGG--------------SSLRQLNLSRNDSESLPASI-TQLSQ 319
            +   +F+ L  L+ L +                  L  L L   +  ++      +L +
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 320 LRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEI----LSGLEEVD 366
           L+ L +     L ++        +L  L   +C  L  +P +    L  L  ++
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLN 254

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 77.4 bits (191), Expect = 6e-15
 Identities = 74/409 (18%), Positives = 134/409 (32%), Gaps = 69/409 (16%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
           FLDL+  +I  IH     F +   L  L       N     +  +  +  L      L++
Sbjct: 61  FLDLTRCQIYWIH--EDTFQSQHRLDTLVLT---AN----PLIFMA-ETALSGPKA-LKH 109

Query: 60  LH-----WHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDI-HN 109
           L              L      + L  L L  + +  I   K        KLK +D  +N
Sbjct: 110 LFFIQTGISSIDFIPLH---NQKTLESLYLGSNHISSI---KLPKGFPTEKLKVLDFQNN 163

Query: 110 SQYLIRMPDLSETPNLERTNLK-NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLH 168
           + + +   D+S        +L  N  ++  +     +      L F G ++L      L 
Sbjct: 164 AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 169 FMSPIKI---DFSSCFNLTEFPQISG------NITDLILSETAIQEV-PSSIECLTNLEK 218
             +   +    F    +  +            ++  + L +     +  ++  C + L++
Sbjct: 224 NSTIQSLWLGTFEDM-DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQE 282

Query: 219 LYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEI-LEKMESVKCISLERTAI--T 275
           L +     L  L + +  L +L  LVL    K E   +I      S+  +S++       
Sbjct: 283 LDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLE 340

Query: 276 ELPSSFANLEGLKDLYIGG----------------SSLRQLNLSRNDSESLPA-SITQLS 318
                  NLE L++L +                  S L+ LNLS N+  SL   +  +  
Sbjct: 341 LGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP 400

Query: 319 QLRSLHLKDCSMLSSLPEL-----PQSLELLDAENCKQLQFIPEILSGL 362
           QL  L L     L              L++L+  +        ++  GL
Sbjct: 401 QLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGL 448

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 73.9 bits (182), Expect = 6e-14
 Identities = 62/396 (15%), Positives = 112/396 (28%), Gaps = 63/396 (15%)

Query: 1   MFLDLSKITSIHLS--------PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEY 52
                 K+  +            +  +++     L   +   NG  I   +        +
Sbjct: 148 KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL---NGNDIAGIEPGAFDSAVF 204

Query: 53  LPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFK---LKYVDI-H 108
                          K L      ++L            I            ++ +++  
Sbjct: 205 QSLNFGGTQNLLVIFKGLKNS-TIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263

Query: 109 NSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLH 168
           +  + I          L+  +L    +L+ +PS +   + L  L     K   +      
Sbjct: 264 HYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLCQIS- 320

Query: 169 FMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYI--NRCMR 226
                    S+  +LT    I GN   L L           +E L NL +L +  +    
Sbjct: 321 --------ASNFPSLTHL-SIKGNTKRLELG-------TGCLENLENLRELDLSHDDIET 364

Query: 227 LKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL--PSSFANL 284
               +  +  L  L  L L     L    E  ++   ++ + L  T +      S F NL
Sbjct: 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424

Query: 285 EGLKDLYIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPELP----- 338
                       L+ LNLS +  +     +   L  L+ L+L+                 
Sbjct: 425 ----------HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQ 473

Query: 339 --QSLELLDAENCKQLQFIPEI----LSGLEEVDAS 368
               LE+L    C  L  I +     L  +  VD S
Sbjct: 474 TLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLS 508

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 63/381 (16%), Positives = 119/381 (31%), Gaps = 88/381 (23%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            L+ S   + +I      F+ + NL FL             I  +H         +  + 
Sbjct: 37  CLEFSFNVLPTIQ--NTTFSRLINLTFLDLT---RC----QIYWIH--------EDTFQS 79

Query: 60  LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIR 115
            H                 L  L L  + ++ +    + A      LK++    +  +  
Sbjct: 80  QH----------------RLDTLVLTANPLIFM---AETALSGPKALKHLFFIQTG-ISS 119

Query: 116 MPD--LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP-SNLHFMSP 172
           +    L     LE   L +  +++ +                  + L+     N      
Sbjct: 120 IDFIPLHNQKTLESLYLGSN-HISSIKLPK----------GFPTEKLKVLDFQNNAIHYL 168

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYI--NRCMRLKRL 230
            K D SS    T           L L+   I  +          + L     + + +   
Sbjct: 169 SKEDMSSLQQATNL--------SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 231 STSICKLKSLHVLVLDDCSKLERFPEILEKME--SVKCISLERTAITEL-PSSFANLEGL 287
                 ++SL +   +D    +  P + E +   SV+ I+L++     +  ++F      
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF--- 277

Query: 288 KDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE-----LPQSLE 342
                  S L++L+L+      LP+ +  LS L+ L L       +L +      P SL 
Sbjct: 278 -------SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFP-SLT 328

Query: 343 LLD-AENCKQLQFIPEILSGL 362
            L    N K+L+     L  L
Sbjct: 329 HLSIKGNTKRLELGTGCLENL 349

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 40/221 (18%), Positives = 74/221 (33%), Gaps = 23/221 (10%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRL-STSICKLK 238
            L E P  +  +   L  S   +  +  ++   L NL  L + RC ++  +   +     
Sbjct: 23  GLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQH 81

Query: 239 SLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGG-- 294
            L  LVL     L       L   +++K +   +T I+ +      N + L+ LY+G   
Sbjct: 82  RLDTLVLTAN-PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH 140

Query: 295 ------------SSLRQLNLSRND-SESLPASITQLSQLRSLHLKDCS-MLSSLPELPQS 340
                         L+ L+   N         ++ L Q  +L L      ++ +      
Sbjct: 141 ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFD 200

Query: 341 LELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT 381
             +  + N    Q +  I  GL+      L   TF +    
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDE 241

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 55/405 (13%), Positives = 115/405 (28%), Gaps = 93/405 (22%)

Query: 3   LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYL---PNELRY 59
              ++   +       + + +L    F   +   +   + +   +  +E +    +    
Sbjct: 209 FGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN 268

Query: 60  LHWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD 118
           +             F     L +L+L  + + ++  G      LK + +  ++    +  
Sbjct: 269 IS---------SNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQ 318

Query: 119 --LSETPNLERTNLK-NCINLTCVPSSVQNFNHLSML---------------CFEGCKSL 160
              S  P+L   ++K N   L      ++N  +L  L                      L
Sbjct: 319 ISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 161 RSFPSNLHFMSPIKID---FSSCFNLTE---------------FPQISGNITDLILSETA 202
           +S   NL +  P+ +    F  C  L                   Q    +  L LS + 
Sbjct: 379 QSL--NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436

Query: 203 IQEVP-SSIECLTNLEKLYI--NR--------------CMRLKRLSTSICKLKSLHVLVL 245
           +        + L  L+ L +  N                 RL+ L  S C L S+     
Sbjct: 437 LDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496

Query: 246 DDCSKLER-----------FPEILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIG 293
                +               E L  ++ +  ++L    I+ + PS    L   + + + 
Sbjct: 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLR 555

Query: 294 GSSL----------RQLNLSRNDSESLPASI-TQLSQLRSLHLKD 327
            + L               +    E    ++      LR + L D
Sbjct: 556 QNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSD 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 25/155 (16%), Positives = 46/155 (29%), Gaps = 29/155 (18%)

Query: 231 STSICKLKSLHVLVLDDCS--KLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGL 287
              I K  +       +C    L   P  L    S +C+      +  +  ++F+ L  L
Sbjct: 6   QKCIEKEVNKTY----NCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINL 59

Query: 288 KDLYIGG--------------SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLS 332
             L +                  L  L L+ N    +  +  +    L+ L       +S
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG-IS 118

Query: 333 SLPELP----QSLELLDAENCKQLQFIPEILSGLE 363
           S+  +P    ++LE L   +              E
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.6 bits (190), Expect = 6e-15
 Identities = 87/620 (14%), Positives = 171/620 (27%), Gaps = 169/620 (27%)

Query: 101 KLKYVDI--HNSQYLIRMPDLSETPNLERTNLKN--CINLTCVPSSVQNFNHL-SMLCFE 155
           + +Y DI        +   D  +  ++ ++ L      ++     +V     L   L  +
Sbjct: 15  QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 156 GCKSLRSFPSNLH------FMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS 209
             + ++ F   +        MSPIK         TE  Q S      I     +      
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIK---------TEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 210 IECLTNLEKLYINRCMRLKRLSTSICKLKS-----LH--------VLVLDDCSKLERFPE 256
                   K  ++R     +L  ++ +L+      +          + LD C       +
Sbjct: 126 ------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC----LSYK 175

Query: 257 ILEKME-SVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND-SESLPASI 314
           +  KM+  +  ++L+     E       LE L+ L      +     SR+D S ++   I
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPE-----TVLEMLQKLL---YQIDPNWTSRSDHSSNIKLRI 227

Query: 315 TQLSQLRSLHLKDCSMLSSLPELPQSLELLD----AE-------NCKQL-----QFIPEI 358
             +       LK              L +L     A+       +CK L     + + + 
Sbjct: 228 HSIQAELRRLLKS-------KPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 359 LSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNEILADSQRWIQHMAI 418
           LS       S+   +  L      +      +    L    +     L           +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQD----LPREVLTTNPRRL 330

Query: 419 ATF--RLFDE----NKYSHIKGPSIILPGSEIPEWFSNQSSGSSITVKPPQNCCRNLIGF 472
           +     + D     + + H+    +                 SS+ V  P    R +  F
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKL------------TTIIESSLNVLEPAE-YRKM--F 375

Query: 473 ALCAVLDYNERIPSG------FSSVFCEYRFEVNAL--------------SGIEHVY--- 509
              +V   +  IP+       F  +  +    VN L                I  +Y   
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 510 -ENCLILASTH-ELIDSDHVVLGFNPCWNVGDGDDHRIFLKFFDIHKHHTA--------- 558
                   + H  ++D  ++   F    ++      + F        HH           
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTF-DSDDLIPPYLDQYFYSHI---GHHLKNIEHPERMT 491

Query: 559 ------ISFEFICDSYKVKSCGVCPVYANPSETKPNTFTLKF-ATRIGKLDDKAASPSGT 611
                 + F F+    + K       +            LKF    I             
Sbjct: 492 LFRMVFLDFRFL----EQKIRHDSTAWNASGSILNTLQQLKFYKPYI------------C 535

Query: 612 SDEEELEPRICSMLHF-PRY 630
            ++ + E  + ++L F P+ 
Sbjct: 536 DNDPKYERLVNAILDFLPKI 555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 76.2 bits (188), Expect = 9e-15
 Identities = 62/369 (16%), Positives = 128/369 (34%), Gaps = 46/369 (12%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L L   +IT I        N+ NL  L+      N     IS +     L  L + L+ L
Sbjct: 117 LTLFNNQITDI----DPLKNLTNLNRLELS---SNT----ISDI---SALSGLTS-LQQL 161

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
            +    +   P       L +L++  +KV  I     +   L+ +   N+Q +  +  L 
Sbjct: 162 SFGNQVTDLKPLA-NLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQ-ISDITPLG 218

Query: 121 ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
              NL+  +L     L     ++ +  +L+ L     + + +           ++   + 
Sbjct: 219 ILTNLDELSLNGN-QLK-DIGTLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGAN 275

Query: 181 FNLTEFPQISG--NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK 238
             ++    ++G   +T+L L+E  ++++   I  L NL  L +     +  +S  +  L 
Sbjct: 276 -QISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN-NISDIS-PVSSLT 331

Query: 239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG---- 294
            L  L   +  K+      L  + ++  +S     I++L    ANL  +  L +      
Sbjct: 332 KLQRLFFYNN-KVSDVSS-LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWT 388

Query: 295 ---------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLD 345
                     S+     +   +   PA+I+         +   ++ S   E+  +     
Sbjct: 389 NAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDIT-WNLPSYTNEVSYTFSQPV 447

Query: 346 AENCKQLQF 354
                   F
Sbjct: 448 TIGKGTTTF 456

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.9 bits (164), Expect = 6e-12
 Identities = 40/205 (19%), Positives = 86/205 (41%), Gaps = 28/205 (13%)

Query: 182 NLTEFPQISG--NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS 239
           N+T+    +    +T L      I+     +E L NL ++  +   +L  ++  +  L  
Sbjct: 35  NVTDTVSQTDLDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNN-QLTDIT-PLKNLTK 91

Query: 240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG----- 294
           L  +++++  ++      L  + ++  ++L    IT++     NL  L  L +       
Sbjct: 92  LVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISD 148

Query: 295 -------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQ--SLELLD 345
                  +SL+QL+     ++  P  +  L+ L  L +     +S +  L +  +LE L 
Sbjct: 149 ISALSGLTSLQQLSFGNQVTDLKP--LANLTTLERLDISSNK-VSDISVLAKLTNLESLI 205

Query: 346 AENCKQLQFIPEI--LSGLEEVDAS 368
           A N  Q+  I  +  L+ L+E+  +
Sbjct: 206 ATNN-QISDITPLGILTNLDELSLN 229

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 36/191 (18%), Positives = 71/191 (37%), Gaps = 26/191 (13%)

Query: 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253
           +  I  +T I ++  +   L    K  + +   +     S   L  +  L  D    ++ 
Sbjct: 5   SATITQDTPINQI-FTDTALAEKMKTVLGKT-NVTDTV-SQTDLDQVTTLQADRL-GIKS 60

Query: 254 FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG------------SSLRQLN 301
              + E + ++  I+     +T++     NL  L D+ +              ++L  L 
Sbjct: 61  IDGV-EYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118

Query: 302 LSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQ--SLELLDAENCKQLQFIPEI- 358
           L  N    +   +  L+ L  L L   + +S +  L    SL+ L   N  Q+  +  + 
Sbjct: 119 LFNNQITDIDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGN--QVTDLKPLA 174

Query: 359 -LSGLEEVDAS 368
            L+ LE +D S
Sbjct: 175 NLTTLERLDIS 185

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.9 bits (179), Expect = 1e-13
 Identities = 59/376 (15%), Positives = 118/376 (31%), Gaps = 55/376 (14%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L L    ++   L    F N+  L  L       N     I  ++L      L + L+ +
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLS---KNQ----IRSLYLHPSFGKLNS-LKSI 153

Query: 61  HWHEYPSKALPF-DFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHN--SQYLIRMP 117
            +       +   + EP  L    L               F L    +++  S    +  
Sbjct: 154 DFSSNQIFLVCEHELEP--LQGKTL-------------SFFSLAANSLYSRVSVDWGKCM 198

Query: 118 DLSETPNLERTNL-KNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKID 176
           +      LE  ++  N   +    +     +            +       H +     +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258

Query: 177 -FSSCFNLTEFPQISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI 234
            F+             ++  L LS   +  + S + E L +L+ L +    ++ +++   
Sbjct: 259 TFAGLARS--------SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEA 309

Query: 235 -CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYI 292
              L +L VL L      E +      +  V  I L++  I  +   +F  LE L+ L +
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369

Query: 293 GG---------SSLRQLNLSRNDSESLPASITQLSQLRSLH--LKDCSMLSSLPELPQSL 341
                       S+  + LS N   +LP      + +      L++  +L  L  +P  L
Sbjct: 370 RDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP-HL 428

Query: 342 ELLDAENCKQLQFIPE 357
           ++L      +      
Sbjct: 429 QILILNQN-RFSSCSG 443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 71.4 bits (175), Expect = 5e-13
 Identities = 63/407 (15%), Positives = 131/407 (32%), Gaps = 67/407 (16%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L LS   I ++     +F  +  L+ L+         P+ I      +    LPN LR L
Sbjct: 29  LLLSFNYIRTVT--ASSFPFLEQLQLLEL---GSQYTPLTID----KEAFRNLPN-LRIL 78

Query: 61  HWHEYPSKALPFD-FEP-ENLVKLNLPYSKVVQIWEGKKRAFK----LKYVDIHNSQY-- 112
                    L  D F+   +L +L L +   +     K   F+    L  +D+  +Q   
Sbjct: 79  DLGSSKIYFLHPDAFQGLFHLFELRLYFCG-LSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 113 LIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           L   P   +  +L+  +  +   +  V         L         +L  F  +L   S 
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSN-QIFLVCE--HELEPLQGK------TLSFF--SLAANSL 186

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI--ECLTNLEKLYINRCMRLKRL 230
                         P  +  +  L +S        +      ++  +   +     +   
Sbjct: 187 YSRVSVDWGKCMN-PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA 245

Query: 231 STSICKLKSLHVLVLD--DCSKLERF-----------PEILEKMESVKCISLERTAITEL 277
                 +K            S +                + E ++ +K ++L    I ++
Sbjct: 246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 278 PS-SFANLEGLKDLYIGG--------------SSLRQLNLSRNDSESLPASITQ-LSQLR 321
              +F  L+ L+ L +                  +  ++L +N    +     + L +L+
Sbjct: 306 ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 322 SLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDAS 368
           +L L+D + L+++  +P S+  +     K L  +P+I      +  S
Sbjct: 366 TLDLRDNA-LTTIHFIP-SIPDIFLSGNK-LVTLPKINLTANLIHLS 409

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 66.4 bits (162), Expect = 2e-11
 Identities = 62/380 (16%), Positives = 135/380 (35%), Gaps = 60/380 (15%)

Query: 2   FLDLSK-ITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLD-----QGLEYL-- 53
            L+L    T + +  +AF N+PNLR L       +     I  +H D       L  L  
Sbjct: 52  LLELGSQYTPLTIDKEAFRNLPNLRILDL---GSSK----IYFLHPDAFQGLFHLFELRL 104

Query: 54  -PNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIH 108
               L      +   + L        L +L+L  +++  ++     +F     LK +D  
Sbjct: 105 YFCGLSDAVLKDGYFRNLK------ALTRLDLSKNQIRSLYLHP--SFGKLNSLKSIDFS 156

Query: 109 NSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP-SNL 167
           ++Q  I +    E   L+   L           S  + +    +       L     S  
Sbjct: 157 SNQ--IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214

Query: 168 HFMSPIKIDFSSCFNLTEFPQISG--NITDLILSETAIQEVPSSI---ECLTNLEKLYIN 222
            +   I  +FS+  + ++   +    +I         I++   +       +++  L ++
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLS 274

Query: 223 RCMRLKRLSTSICK-LKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPS- 279
               +  L++ + + LK L VL L    K+ +  +     +++++ ++L    + EL S 
Sbjct: 275 HG-FVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNLSYNLLGELYSS 332

Query: 280 SFANLEGLKDLYIGG--------------SSLRQLNLSRNDSESLPASITQLSQLRSLHL 325
           +F  L  +  + +                  L+ L+L  N   ++      +  +  + L
Sbjct: 333 NFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSIPDIFL 388

Query: 326 KDCSMLSSLPELPQSLELLD 345
                L +LP++  +  L+ 
Sbjct: 389 SGNK-LVTLPKINLTANLIH 407

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 59.8 bits (145), Expect = 2e-09
 Identities = 73/376 (19%), Positives = 124/376 (32%), Gaps = 99/376 (26%)

Query: 2   FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLH 61
            LDLS      L+ + F  + +L+ L      +N     I+K+               L 
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNL---AYN----KINKIA--------DEAFYGL- 313

Query: 62  WHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSE 121
                          +NL  LNL                       +N    +   +   
Sbjct: 314 ---------------DNLQVLNL----------------------SYNLLGELYSSNFYG 336

Query: 122 TPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
            P +   +L+   ++  +     +    L  L            + +HF+  I   F S 
Sbjct: 337 LPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSG 390

Query: 181 FNLTEFPQISGNITDLILSETAIQEVP--SSIECLTNLEKLYINRCMRLKRLS--TSICK 236
             L   P+I+     + LSE  ++ +     +  + +L+ L +N+  R    S   +  +
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSE 449

Query: 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGGS 295
             SL  L L +                     L+    TEL    F  L          S
Sbjct: 450 NPSLEQLFLGEN-------------------MLQLAWETELCWDVFEGL----------S 480

Query: 296 SLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE--LPQSLELLDAENCKQL 352
            L+ L L+ N   SLP  + + L+ LR L L     L+ L    LP +LE+LD    + L
Sbjct: 481 HLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLSHNDLPANLEILDISRNQLL 539

Query: 353 QFIPEILSGLEEVDAS 368
              P++   L  +D +
Sbjct: 540 APNPDVFVSLSVLDIT 555

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 58.7 bits (142), Expect = 5e-09
 Identities = 35/175 (20%), Positives = 66/175 (37%), Gaps = 14/175 (8%)

Query: 176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI 234
            +  C NLT+ PQ+      L+LS   I+ V +S    L  L+ L +        +    
Sbjct: 10  FYRFC-NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA 68

Query: 235 CK-LKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292
            + L +L +L L    K+        + +  +  + L    +++          LK    
Sbjct: 69  FRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLK---- 123

Query: 293 GGSSLRQLNLSRNDSESLP--ASITQLSQLRSLHLKDCSMLSSLPELPQSLELLD 345
              +L +L+LS+N   SL    S  +L+ L+S+      +        + L+   
Sbjct: 124 ---ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 72.0 bits (177), Expect = 2e-13
 Identities = 78/406 (19%), Positives = 134/406 (33%), Gaps = 73/406 (17%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            L+L+  ++  +      F     L  L       N     ISK+   +  + LP  L+ 
Sbjct: 29  VLNLTHNQLRRLP--AANFTRYSQLTSLDV---GFN----TISKLE-PELCQKLPM-LKV 77

Query: 60  LHW-----HEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDI-HN 109
           L+       +   K         NL +L+L  + + +I   K   F     L  +D+ HN
Sbjct: 78  LNLQHNELSQLSDKTF---AFCTNLTELHLMSNSIQKI---KNNPFVKQKNLITLDLSHN 131

Query: 110 SQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSML----------------C 153
                ++    +  NL+   L N   +  + S   +    S L                C
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190

Query: 154 FEGCKSLRSFP-SNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI-- 210
           F     L     +N+     +          T       +I +L LS + +    ++   
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANT-------SIRNLSLSNSQLSTTSNTTFL 243

Query: 211 -ECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCIS 268
               TNL  L ++    L  +   S   L  L    L+  +    F   L  + +V+ ++
Sbjct: 244 GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLN 302

Query: 269 LERTAITELPSSFANLEGLKDLYIGG-SSLRQLNLSRND-SESLPASITQLSQLRSLHLK 326
           L+R + T+   S A+L  + D        L  LN+  ND         T L  L+ L L 
Sbjct: 303 LKR-SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 327 DCSMLSSLPELP---------QSLELLDAENCKQLQFIPEILSGLE 363
           +     SL  L            L +L+    K  +   +  S L 
Sbjct: 362 NSFT--SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.9 bits (169), Expect = 3e-12
 Identities = 68/417 (16%), Positives = 133/417 (31%), Gaps = 81/417 (19%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            LDLS   ++S          + NL+ L      +N     I  +  ++   +  + L+ 
Sbjct: 125 TLDLSHNGLSSTK--LGTQVQLENLQELLLS---NNK----IQALKSEELDIFANSSLKK 175

Query: 60  LHWHEYPSKALPFD--FEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYL 113
           L       K            L  L L   ++      K         ++ + + NSQ  
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-- 233

Query: 114 IRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP-SNLHFMSP 172
           +     +    L+ TNL   ++L     S  N N +    F     L  F     +    
Sbjct: 234 LSTTSNTTFLGLKWTNLTM-LDL-----SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLS 231
                   FN+     +  + T   +S  ++ ++   S + L  LE L +         S
Sbjct: 288 FSHSLHGLFNVRYL-NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS 346

Query: 232 TSICKLKSLHVLVLDDC-----------------SKLER-----------FPEILEKMES 263
                L +L  L L +                  S L               +    +  
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH 406

Query: 264 VKCISLERTAITEL--PSSFANLEGLKDLYIGG--------------SSLRQLNLSRN-- 305
           ++ + L    I +      +  LE + ++Y+                 SL++L L R   
Sbjct: 407 LEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466

Query: 306 -DSESLPASITQLSQLRSLHLKDCSMLSSLPEL----PQSLELLDAENCKQLQFIPE 357
            + +S P+    L  L  L L + + ++++ +      + LE+LD ++   L  + +
Sbjct: 467 KNVDSSPSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHN-NLARLWK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 21/191 (10%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRL-STSICKLK 238
            LT+ P  +  NIT L L+   ++ +  ++    + L  L +     + +L      KL 
Sbjct: 15  KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLP 73

Query: 239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSL 297
            L VL L      +   +      ++  + L   +I ++  + F              +L
Sbjct: 74  MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ----------KNL 123

Query: 298 RQLNLSRND-SESLPASITQLSQLRSLHLKDCSMLSSLPEL-----PQSLELLDAENCKQ 351
             L+LS N  S +   +  QL  L+ L L +  + +   E        SL+ L+  + + 
Sbjct: 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183

Query: 352 LQFIPEILSGL 362
            +F P     +
Sbjct: 184 KEFSPGCFHAI 194

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 67/359 (18%), Positives = 125/359 (34%), Gaps = 59/359 (16%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
           +  L    I   HL   +   + N+R+L       +     IS   L    +      ++
Sbjct: 276 YFFLEYNNIQ--HLFSHSLHGLFNVRYLNLK---RSFTKQSISLASLP---KIDDFSFQW 327

Query: 60  LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF-KLKYVDIHNSQYLIRMPD 118
           L                  L  LN+  + +  I          LKY+ + NS   +R   
Sbjct: 328 LK----------------CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 119 LSETPNLERTNLKNCINLTCVPSSVQNFNHLSML---CFEGCKSLRSFPSNLHFMSPIKI 175
                +L  + L   +NL          N +S +    F     L     +L        
Sbjct: 372 NETFVSLAHSPLHI-LNL--------TKNKISKIESDAFSWLGHLEVL--DLGLNE---- 416

Query: 176 DFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYI--NRCMRLKRLST 232
                    E+  +  NI ++ LS     ++  +S   + +L++L +       +    +
Sbjct: 417 -IGQELTGQEWRGLE-NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPS 474

Query: 233 SICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITELPSSFANLEGLKDLY 291
               L++L +L L +   +     ++LE +E ++ + L+   +  L    AN  G     
Sbjct: 475 PFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARLWKH-ANPGGPIYFL 532

Query: 292 IGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCSMLSSLPELP----QSLELLD 345
            G S L  LNL  N  + +P      L +L+ + L   + L++LP        SL+ L+
Sbjct: 533 KGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLN 590

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 43/319 (13%), Positives = 94/319 (29%), Gaps = 59/319 (18%)

Query: 78  NLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNC 133
           N+ +L+L  + + QI            KL+ +++ ++  L    DL     L   +L N 
Sbjct: 35  NVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNN 90

Query: 134 INLTCVPSSVQ------NFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFP 187
             +  +             N++S +     +  ++            I  ++   +T   
Sbjct: 91  -YVQELLVGPSIETLHAANNNISRVSCSRGQGKKN------------IYLANN-KITMLR 136

Query: 188 QIS----GNITDLILSETAIQEVPSS--IECLTNLEKLYINRCMRLKRLSTSICKLKSLH 241
            +       +  L L    I  V  +        LE L +     +  +   +     L 
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLK 194

Query: 242 VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLN 301
            L L    KL       +    V  ISL    +  +  +               +L   +
Sbjct: 195 TLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS----------QNLEHFD 243

Query: 302 LSRN--DSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEIL 359
           L  N     +L    ++  +++++  +            + L   + E C          
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQT----------VKKLTGQNEEECTVPTLGHYGA 293

Query: 360 SGLEEVDASVLEKATFLNS 378
              E++ A   ++   L  
Sbjct: 294 YCCEDLPAPFADRLIALKR 312

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 59.5 bits (144), Expect = 2e-09
 Identities = 47/405 (11%), Positives = 112/405 (27%), Gaps = 87/405 (21%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           LDLS   ++ I       A    L  L       N              L     +L  L
Sbjct: 39  LDLSGNPLSQIS--AADLAPFTKLELLNLS---SNV-------------LYETL-DLESL 79

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
                             L  L+L  + V ++  G      ++ +   N+   I     S
Sbjct: 80  S----------------TLRTLDLNNNYVQELLVGPS----IETLHAANNN--ISRVSCS 117

Query: 121 ETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCK----SLRSFPSNLHFMSPIKI 175
                +   L N   +T +        + +  L  +  +    +     ++   +    +
Sbjct: 118 RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE--HL 174

Query: 176 DFSSCFNLTEFPQIS--GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS 233
           +      + +         +  L LS   +  +    +    +  + +    +L  +  +
Sbjct: 175 NLQYN-FIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKA 232

Query: 234 ICKLKSLHVLVLDD----CSKLERFPEILEKMESVKC-------------------ISLE 270
           +   ++L    L      C  L  F    +++++V                         
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292

Query: 271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM 330
                +LP+ F   + L  L         L+   +++E L       ++ R +       
Sbjct: 293 AYCCEDLPAPF--ADRLIALKR--KEHALLSGQGSETERLECERENQARQREIDALKEQ- 347

Query: 331 LSSLP----ELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLE 371
             ++        Q+   L+ +     + +        E+D ++ +
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 18/128 (14%)

Query: 254 FPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGG--------------SSLR 298
             EI +     K   +  +++ +  +S   +   +K+L + G              + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 299 QLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEI 358
            LNLS N        +  LS LR+L L +   +  L   P S+E L A N    +     
Sbjct: 62  LLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVGP-SIETLHAANNNISRVSCSR 118

Query: 359 LSGLEEVD 366
             G + + 
Sbjct: 119 GQGKKNIY 126

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 1e-12
 Identities = 54/290 (18%), Positives = 114/290 (39%), Gaps = 35/290 (12%)

Query: 173 IKIDFSSCFNLTEFPQISG--NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRL 230
           IK +     ++T+    +   +I  +I + + I+ V   I+ L N+ KL++N   +L  +
Sbjct: 24  IKDNLKKK-SVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN-KLTDI 80

Query: 231 STSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDL 290
              +  LK+L  L LD+  K++     L+ ++ +K +SLE   I+++ +   +L  L+ L
Sbjct: 81  K-PLTNLKNLGWLFLDEN-KIKDL-SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESL 136

Query: 291 YIGG------------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDC--SMLSSLPE 336
           Y+G             + L  L+L  N    +   +  L++L++L+L     S L +L  
Sbjct: 137 YLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISDLRALAG 195

Query: 337 LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLK 396
           L  +L++L+  + + L       S L      V       +      S     + S+   
Sbjct: 196 LK-NLDVLELFSQECLNKPINHQSNLV-----VPNTVKNTD-----GSLVTPEIISDDGD 244

Query: 397 LNEKANNEILADSQRWIQHMAIATFRLFDENKYSHIKGPSIILPGSEIPE 446
             +      L +    +  +      +       H +    +     +  
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSY 294

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.3 bits (117), Expect = 3e-06
 Identities = 48/249 (19%), Positives = 89/249 (35%), Gaps = 48/249 (19%)

Query: 3   LDLSK--ITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
            +L K  +T           + ++  +      ++     I  V   QG++YLPN +  L
Sbjct: 26  DNLKKKSVTDA----VTQNELNSIDQIIAN---NSD----IKSV---QGIQYLPN-VTKL 70

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
             +      +      +NL  L L  +K+  +    K   KLK + + ++  +  +  L 
Sbjct: 71  FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL-SSLKDLKKLKSLSLEHNG-ISDINGLV 128

Query: 121 ETPNLERTNL-KNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI-DFS 178
             P LE   L  N I      + +   + L+ L      +L S   N       +I D  
Sbjct: 129 HLPQLESLYLGNNKI------TDITVLSRLTKL-----DTL-SLEDN-------QISDIV 169

Query: 179 SCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK 238
               LT        + +L LS+  I ++  ++  L NL+ L +     L +       L 
Sbjct: 170 PLAGLT-------KLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLV 221

Query: 239 SLHVLVLDD 247
             + +   D
Sbjct: 222 VPNTVKNTD 230

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 15/161 (9%)

Query: 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL 251
           ++T + L+   + ++ + IE   N++ L IN        +  I  L +L  L +      
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNI-HATNYN-PISGLSNLERLRIMGKDVT 101

Query: 252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP 311
                 L  + S+  + +  +A  +  S    +  L         +  ++LS N + +  
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDD--SILTKINTLP-------KVNSIDLSYNGAITDI 152

Query: 312 ASITQLSQLRSLHLKDC--SMLSSLPELPQSLELLDAENCK 350
             +  L +L+SL+++         + + P+ L  L A +  
Sbjct: 153 MPLKTLPELKSLNIQFDGVHDYRGIEDFPK-LNQLYAFSQT 192

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.5 bits (165), Expect = 3e-12
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 21/176 (11%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI-CKLK 238
            +TE P  +  N  +L    T ++ +         +LEK+ I++   L+ +   +   L 
Sbjct: 20  KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 239 SLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGG-- 294
            LH + ++  + L     E  + + +++ + +  T I  LP     +      L I    
Sbjct: 80  KLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 139

Query: 295 --------------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE 336
                              L L++N  + +  S    +QL  L+L D + L  LP 
Sbjct: 140 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.7 bits (129), Expect = 7e-08
 Identities = 52/265 (19%), Positives = 90/265 (33%), Gaps = 55/265 (20%)

Query: 76  PENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIRMPD--LSETPNLERTN 129
           P N ++L    +K+  I   +K AF     L+ ++I  +  L  +     S  P L    
Sbjct: 29  PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 130 LKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSP--IKIDFSSCFNLTE- 185
           ++   NL  +     QN  +L  L       ++  P      S   + +D     N+   
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 186 ----FPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLH 241
               F  +S     L L++  IQE+ +S    T L++L ++    L+ L           
Sbjct: 145 ERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP---------- 194

Query: 242 VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSLRQL 300
                         ++         + + RT I  LPS    NL            LR  
Sbjct: 195 -------------NDVFHGASGPVILDISRTRIHSLPSYGLENL----------KKLRAR 231

Query: 301 NLSRNDSESLPASITQLSQLRSLHL 325
           +      + LP ++ +L  L    L
Sbjct: 232 STYNL--KKLP-TLEKLVALMEASL 253

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 3e-12
 Identities = 78/384 (20%), Positives = 127/384 (33%), Gaps = 51/384 (13%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLD--QGLEYLPNELR 58
           LDLS   +  I   P AF  +  L  L      +N   + + K  +    GLE     L 
Sbjct: 182 LDLSLNPMNFI--QPGAFKEI-RLHKLTLR---NNFDSLNVMKTCIQGLAGLEVHRLVLG 235

Query: 59  YLHWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYL 113
                    K      E   NL       + +    +     F     +    + +   +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-I 294

Query: 114 IRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP----SNLHF 169
            R+ D S     +   L NC      P+       L  L F   K   +F      +L F
Sbjct: 295 ERVKDFSYNFGWQHLELVNC-KFGQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 170 --MSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRL 227
             +S   + F  C + ++F   + ++  L LS   +  + S+   L  LE L       L
Sbjct: 352 LDLSRNGLSFKGCCSQSDFG--TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NL 408

Query: 228 KRLS--TSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE--LPSSFAN 283
           K++S  +    L++L  L +        F  I   + S++ + +   +  E  LP  F  
Sbjct: 409 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 284 LEGLKDLYIGG--------------SSLRQLNLSRND-SESLPASITQLSQLRSLHLKDC 328
           L  L  L +                SSL+ LN+S N+           L+ L+ L     
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528

Query: 329 SM----LSSLPELPQSLELLDAEN 348
            +       L   P SL  L+   
Sbjct: 529 HIMTSKKQELQHFPSSLAFLNLTQ 552

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 69/433 (15%), Positives = 128/433 (29%), Gaps = 81/433 (18%)

Query: 2   FLDLSKITSIHLS--------PQAFANMPNLRFLKFYMPEHNGVPIM------------- 40
           +  LS ++++ L+          AF+ + +L+ L         +  +             
Sbjct: 72  YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV---ETNLASLENFPIGHLKTLKE 128

Query: 41  -------ISKVHLDQGLEYLPNELRYLHWHEYP-SKALPFDFE-----PENLVKLNLPYS 87
                  I    L +    L N L +L             D       P   + L+L  +
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187

Query: 88  KVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERTNLKNCINLTCVPSSVQN 145
            +  I  G  +  +L  + + N+   + +    +     LE   L              +
Sbjct: 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247

Query: 146 FNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGN------------- 192
            + L  LC    +  R      +++  I   F+   N++ F  +                
Sbjct: 248 KSALEGLCNLTIEEFR-LAYLDYYLDDIIDLFNCLTNVSSF-SLVSVTIERVKDFSYNFG 305

Query: 193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDD--CSK 250
              L L      + P+    L +L++L           + S   L SL  L L     S 
Sbjct: 306 WQHLELVNCKFGQFPTL--KLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 251 LERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG---------------S 295
                +      S+K + L    +  + S+F  LE L+ L                    
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 296 SLRQLNLSRND-SESLPASITQLSQLRSLHLKDCSMLSSLP----ELPQSLELLDAENCK 350
           +L  L++S      +       LS L  L +   S   +         ++L  LD   C+
Sbjct: 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481

Query: 351 QLQFIPEILSGLE 363
             Q  P   + L 
Sbjct: 482 LEQLSPTAFNSLS 494

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 64/385 (16%), Positives = 119/385 (30%), Gaps = 58/385 (15%)

Query: 1   MFLDLSKITSIHLS--------PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEY 52
            F  LS +  +                ++  L+ L      HN    +I    L +    
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA---HN----LIQSFKLPEYFSN 147

Query: 53  LPNELRYLHWHEYP-SKALPFDFE-----PENLVKLNLPYSKVVQIWEGKKRAFKLKYVD 106
           L N L +L             D       P   + L+L  + +  I  G  +  +L  + 
Sbjct: 148 LTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 107 IHNSQYLIRMPD--LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP 164
           + N+   + +    +     LE   L              + + L  LC    +  R   
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR-LA 265

Query: 165 SNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRC 224
              +++  I   F+   N++             L    I+ V          + L +  C
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSS----------FSLVSVTIERVKDFSY-NFGWQHLELVNC 314

Query: 225 MRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL---PSSF 281
            +  +  T    LKSL  L          F E+   + S++ + L R  ++       S 
Sbjct: 315 -KFGQFPTLK--LKSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 282 ANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELP--- 338
                        +SL+ L+LS N   ++ ++   L QL  L  +  ++           
Sbjct: 370 FGT----------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419

Query: 339 -QSLELLDAENCKQLQFIPEILSGL 362
            ++L  LD  +         I +GL
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGL 444

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 63/388 (16%), Positives = 111/388 (28%), Gaps = 85/388 (21%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            LDLS   +  +     +F + P L+ L             I  +             + 
Sbjct: 32  NLDLSFNPLRHLG--SYSFFSFPELQVLDLS---RCE----IQTIE--------DGAYQS 74

Query: 60  LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIR 115
           L                 +L  L L  + +  +      AF     L+ +    +  L  
Sbjct: 75  LS----------------HLSTLILTGNPIQSL---ALGAFSGLSSLQKLVAVETN-LAS 114

Query: 116 MPD--LSETPNLERTNL-KNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           + +  +     L+  N+  N I    +P    N  +L  L     K            S 
Sbjct: 115 LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK----------IQSI 164

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCM-RLKRLS 231
              D      +            L LS   +  +         L KL +      L  + 
Sbjct: 165 YCTDLRVLHQMPL------LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 232 TSICKLKSLHVLVLD-----DCSKLERFPE-ILEKMESVKCISLERTAIT----ELPSSF 281
           T I  L  L V  L      +   LE+F +  LE + ++         +     ++   F
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 282 ANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSL 341
             L          +++   +L     E +    +     + L L +C          +SL
Sbjct: 279 NCL----------TNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 342 ELLDAENCKQLQFIPEI-LSGLEEVDAS 368
           + L   + K      E+ L  LE +D S
Sbjct: 328 KRLTFTSNKGGNAFSEVDLPSLEFLDLS 355

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 4e-07
 Identities = 60/355 (16%), Positives = 117/355 (32%), Gaps = 58/355 (16%)

Query: 3   LDLSK-ITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIM--ISKVHLD--QGLEYLPNEL 57
           L L     S+++       +  L   +  + E      +    K  L+    L      L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 58  RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDI---------- 107
            YL ++      L       N+   +L    + ++ +     F  +++++          
Sbjct: 265 AYLDYYLDDIIDLFNCLT--NVSSFSLVSVTIERVKDFSYN-FGWQHLELVNCKFGQFPT 321

Query: 108 ----------HNSQYLIRMPDLSETPNLERTNL-KNCIN-LTCVPSSVQNFNHLSMLCFE 155
                       S          + P+LE  +L +N ++   C   S      L  L   
Sbjct: 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 156 GCKSLRSFPSNLHFMSPIK-IDFSSCFNLTEFPQIS-----GNITDLILSETAIQEV-PS 208
               + +  SN   +  ++ +DF    NL +  + S      N+  L +S T  +     
Sbjct: 382 FNG-VITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

Query: 209 SIECLTNLEKLYINRCMRLKRL-STSICKLKSLHVLVLDDCSKLERF-PEILEKMESVKC 266
               L++LE L +      +        +L++L  L L  C +LE+  P     + S++ 
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQV 498

Query: 267 ISLERTAITEL-PSSFANLEGLKDLYIGG---------------SSLRQLNLSRN 305
           +++       L    +  L  L+ L                   SSL  LNL++N
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 553

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 23/136 (16%)

Query: 234 ICKLKSLHVLVLDDCS--KLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKDL 290
           +  + ++       C      + P+ L    S K + L    +  L   SF +       
Sbjct: 4   VEVVPNITY----QCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSF------ 51

Query: 291 YIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDA 346
                 L+ L+LSR + +++   +   LS L +L L    + S          SL+ L A
Sbjct: 52  ----PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 347 ENCKQLQFIPEILSGL 362
                       +  L
Sbjct: 108 VETNLASLENFPIGHL 123

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 66.2 bits (162), Expect = 6e-12
 Identities = 27/203 (13%), Positives = 62/203 (30%), Gaps = 26/203 (12%)

Query: 182 NLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRL-STSICKLKSL 240
            + E      +I  L  +   I  V  S       + +Y+    ++  L          +
Sbjct: 91  YVQELLVGP-SIETLHAANNNISRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRV 146

Query: 241 HVLVLDDC--SKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG---- 294
             L L       +  F E+    ++++ ++L+   I ++         LK L +      
Sbjct: 147 QYLDLKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLA 204

Query: 295 ---------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKD----CSMLSSLPELPQSL 341
                    + +  ++L  N    +  ++     L    L+     C  L       Q +
Sbjct: 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 342 ELLDAENCKQLQFIPEILSGLEE 364
           + +  +  K+L    E    +  
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPT 287

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.6 bits (158), Expect = 2e-11
 Identities = 44/364 (12%), Positives = 97/364 (26%), Gaps = 92/364 (25%)

Query: 1   MFLDLSKITSIHLS--------PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEY 52
           +  + ++     ++             +  N++ L       N     +S++        
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLS---GN----PLSQIS------- 50

Query: 53  LPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIH 108
              +L                     L  LNL  + + +              L+ +D++
Sbjct: 51  -AADLAPFT----------------KLELLNLSSNVLYET-----LDLESLSTLRTLDLN 88

Query: 109 NSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLH 168
           N+     + +L   P++E  +  N  N++ V  S         +     K +        
Sbjct: 89  NNY----VQELLVGPSIETLHAANN-NISRVSCS--RGQGKKNIYLANNK-ITMLRDL-- 138

Query: 169 FMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP--SSIECLTNLEKLYINRCMR 226
                  D      +            L L    I  V           LE L +     
Sbjct: 139 -------DEGCRSRVQY----------LDLKLNEIDTVNFAELAASSDTLEHLNLQYN-F 180

Query: 227 LKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEG 286
           +  +   +     L  L L    KL       +    V  ISL    +  +  +      
Sbjct: 181 IYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS-- 236

Query: 287 LKDLYIGGSSLRQLNLSRN--DSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELL 344
                    +L   +L  N     +L    ++  +++++  +    L+   E   ++  L
Sbjct: 237 --------QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288

Query: 345 DAEN 348
               
Sbjct: 289 GHYG 292

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 6e-08
 Identities = 27/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 255 PEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGG--------------SSLRQ 299
            EI +     K   +  +++ +  +S   +   +K+L + G              + L  
Sbjct: 3   HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62

Query: 300 LNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIP-EI 358
           LNLS N        +  LS LR+L L +   +  L   P S+E L A N   +  +    
Sbjct: 63  LNLSSNVLYETL-DLESLSTLRTLDLNNNY-VQELLVGP-SIETLHAANN-NISRVSCSR 118

Query: 359 LSGLEEVDAS 368
             G + +  +
Sbjct: 119 GQGKKNIYLA 128

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 66.6 bits (163), Expect = 8e-12
 Identities = 51/355 (14%), Positives = 108/355 (30%), Gaps = 71/355 (20%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           +      +  +        +   +  L                 +L+        ++  +
Sbjct: 50  VTFKNSTMRKL--PAALLDSFRQVELL-----------------NLND------LQIEEI 84

Query: 61  HWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIR 115
                      + F     + KL + ++ +  +       F     L  + +  +  L  
Sbjct: 85  D---------TYAFAYAHTIQKLYMGFNAIRYLPPH---VFQNVPLLTVLVLERND-LSS 131

Query: 116 MPD--LSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           +P      TP L   ++ N  NL  +     Q    L  L     + L     +L   S 
Sbjct: 132 LPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVDLSL-IPSL 188

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST 232
              + S    L+    I   + +L  S  +I  V   +     L  L +     L   + 
Sbjct: 189 FHANVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHN-NLTDTAW 243

Query: 233 SICKLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPSSFANLEGLKDLY 291
            +     L  + L    +LE+       KM+ ++ + +    +  L      +       
Sbjct: 244 -LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI------- 294

Query: 292 IGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLD 345
               +L+ L+LS N    +  +  Q  +L +L+L   S + +L      +L+ L 
Sbjct: 295 ---PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 33/182 (18%), Positives = 72/182 (39%), Gaps = 19/182 (10%)

Query: 192 NITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI-CKLKSLHVLVLDDCS 249
           N   +    + ++++P+++ +    +E L +N   +++ + T       ++  L +    
Sbjct: 46  NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN- 103

Query: 250 KLERFPE-ILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGGSSLRQLNLSRNDS 307
            +   P  + + +  +  + LER  ++ LP   F N             L  L++S N+ 
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNT----------PKLTTLSMSNNNL 153

Query: 308 ESLPASI-TQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVD 366
           E +        + L++L L    +      L  SL   +      L  +  I   +EE+D
Sbjct: 154 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLA-IPIAVEELD 211

Query: 367 AS 368
           AS
Sbjct: 212 AS 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 65.9 bits (161), Expect = 1e-11
 Identities = 38/164 (23%), Positives = 65/164 (39%), Gaps = 26/164 (15%)

Query: 192 NITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI-CKLKSLHVLVLDDCS 249
            + +L L    I+ +PS     + +L +L +    RL  +S      L +L  L L  C 
Sbjct: 137 KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC- 195

Query: 250 KLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGG-------------- 294
            L   P  L  +  +  + L    ++ +   SF  L  L+ L++                
Sbjct: 196 NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 295 SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK------DCSML 331
            SL ++NL+ N+   LP  + T L  L  +HL       +C +L
Sbjct: 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL 298

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.0 bits (156), Expect = 5e-11
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 47/196 (23%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICKLKS 239
           NL E P  IS N   L L E  IQ +  +  + L +LE L ++R             +++
Sbjct: 54  NLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-----------HIRT 102

Query: 240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSLR 298
           + +   +  + L               + L    +T +P+ +F  L          S L+
Sbjct: 103 IEIGAFNGLANLNT-------------LELFDNRLTTIPNGAFVYL----------SKLK 139

Query: 299 QLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE-----LPQSLELLDAENCKQL 352
           +L L  N  ES+P+    ++  LR L L +   LS + E     L  +L  L+   C  L
Sbjct: 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS-NLRYLNLAMC-NL 197

Query: 353 QFIPEI--LSGLEEVD 366
           + IP +  L  L+E+D
Sbjct: 198 REIPNLTPLIKLDELD 213

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 54/304 (17%), Positives = 100/304 (32%), Gaps = 88/304 (28%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L+L   +I  I     +F ++ +L  L+      N     I  +        L N L  L
Sbjct: 69  LNLHENQIQIIK--VNSFKHLRHLEILQLS---RN----HIRTIE-IGAFNGLAN-LNTL 117

Query: 61  HWHEYPSKALPFD-FEP-ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD 118
              +     +P   F     L +L L  + +  I      AF                  
Sbjct: 118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY---AF------------------ 156

Query: 119 LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFS 178
            +  P+L R +L     L+ +              FEG  +LR             ++ +
Sbjct: 157 -NRIPSLRRLDLGELKRLSYISEGA----------FEGLSNLRY------------LNLA 193

Query: 179 SCFNLTEFPQISG--NITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSIC 235
            C NL E P ++    + +L LS   +  +   S + L +L+KL++ +            
Sbjct: 194 MC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQ-----------S 241

Query: 236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGG 294
           +++ +     D+   L               I+L    +T LP   F  L  L+ +++  
Sbjct: 242 QIQVIERNAFDNLQSLVE-------------INLAHNNLTLLPHDLFTPLHHLERIHLHH 288

Query: 295 SSLR 298
           +   
Sbjct: 289 NPWN 292

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 47/292 (16%), Positives = 97/292 (33%), Gaps = 59/292 (20%)

Query: 78  NLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIRMPD--LSETPNLERTNLK 131
            +  LNL   ++ +I      AF     ++ + +  +  +  +P       P L    L+
Sbjct: 76  QVELLNLNDLQIEEI---DTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLE 131

Query: 132 NCINLTCVPSSVQNFNHLSML----------------CFEGCKSLR----------SFPS 165
              +L+ +P  +  F++   L                 F+   SL+              
Sbjct: 132 RN-DLSSLPRGI--FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL 188

Query: 166 NLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCM 225
           +L   S    + S    L+    I   + +L  S  +I  V   +     L  L +    
Sbjct: 189 SL-IPSLFHANVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHN- 242

Query: 226 RLKRLSTSICKLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPSSFANL 284
            L   +  +     L  + L    +LE+       KM+ ++ + +    +  L      +
Sbjct: 243 NLTDTAW-LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPI 300

Query: 285 EGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE 336
                      +L+ L+LS N    +  +  Q  +L +L+L   S + +L  
Sbjct: 301 ----------PTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNS-IVTLKL 341

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 64.6 bits (157), Expect = 5e-11
 Identities = 56/381 (14%), Positives = 124/381 (32%), Gaps = 52/381 (13%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           +      +  +        +   +  L             I ++       Y    ++ L
Sbjct: 56  VTFKNSTMRKL--PAALLDSFRQVELLNL---NDLQ----IEEIDTYA-FAYAHT-IQKL 104

Query: 61  HWHEYPSKALPFD-FEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLI 114
           +      + LP   F+    L  L L  + +  +    +  F    KL  + + N+  L 
Sbjct: 105 YMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL---PRGIFHNTPKLTTLSMSNNN-LE 160

Query: 115 RMPD--LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           R+ D     T +L+   L +   LT V  S      L          L +    +     
Sbjct: 161 RIEDDTFQATTSLQNLQLSSN-RLTHVDLS--LIPSLFHANVSYNL-LSTLAIPIAV--- 213

Query: 173 IKIDFSSCFNLTEFP-QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLS 231
            ++D S   ++      ++  +T L L    + +    +     L ++ ++    L+++ 
Sbjct: 214 EELDASHN-SINVVRGPVNVELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYN-ELEKIM 270

Query: 232 TSICK-LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDL 290
                 ++ L  L + + ++L       + + ++K + L    +  +  +    + L++L
Sbjct: 271 YHPFVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL 329

Query: 291 YIGG-----------SSLRQLNLSRND--SESLPASITQLSQLRSLHLK-DCSMLSSLPE 336
           Y+              +L+ L LS ND    SL A    +++         C +   L  
Sbjct: 330 YLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEH 389

Query: 337 LPQSLELLDAENCKQLQFIPE 357
                E       + LQ+I  
Sbjct: 390 GLCCKESDKPYLDRLLQYIAL 410

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.3 bits (159), Expect = 2e-11
 Identities = 60/390 (15%), Positives = 131/390 (33%), Gaps = 49/390 (12%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPE-HNGVPIMISKVHLDQGLEYLPNELR 58
            LDLS     ++ +  + F NM  L+FL            + I+ +++ + L  L     
Sbjct: 94  HLDLSFNAFDALPI-CKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 59  Y--------------LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKY 104
                          LH     +K   F  +       NL  S +  + E  K ++ L  
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 105 VDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFP 164
           +    +   +    L+       + ++    L  V  +   +  +S +  +G    R F 
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRI---LQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 165 SNLHFMSPIKIDFSSCFNLTEFP----QISGNITDLILSETAIQEVPS-SIECLTNLEKL 219
            +   +  + I                +I  N+     + +  + V       ++    L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329

Query: 220 YINRCMRLKRLSTSIC-KLKSLHVLVLDDC--SKLERFPEILEKMESVKCISLERTAITE 276
             +    L       C  L  L  L+L      +L +  E+  +M+S++ + + + +++ 
Sbjct: 330 DFSNN-LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388

Query: 277 L--PSSFANLEGLKDLYIGG------------SSLRQLNLSRNDSESLPASITQLSQLRS 322
                  +  + L  L +                ++ L+L  N  +S+P  + +L  L+ 
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448

Query: 323 LHLKDCSMLSSLPELP----QSLELLDAEN 348
           L++     L S+P+       SL+ +    
Sbjct: 449 LNVASNQ-LKSVPDGIFDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 48/383 (12%), Positives = 106/383 (27%), Gaps = 47/383 (12%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L++S   I+   L      ++  LR L      HN     I  +      ++    L YL
Sbjct: 26  LNISQNYISE--LWTSDILSLSKLRILIIS---HN----RIQYLD-ISVFKFNQE-LEYL 74

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIRM 116
                    +       NL  L+L ++    +   K   F    +LK++ +  +   +  
Sbjct: 75  DLSHNKLVKISCH-PTVNLKHLDLSFNAFDALPICK--EFGNMSQLKFLGLSTTH--LEK 129

Query: 117 PDLSETPNLERTNLK-NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175
             +    +L  + +              +     +                +  +S   +
Sbjct: 130 SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTV 189

Query: 176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC 235
                 N+    + +     L +          S   L N+E  + +    L+ +  +  
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249

Query: 236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGG 294
              S+  + L        F      ++++    +         S  +     +       
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 295 S--------------SLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPELPQ 339
           S                  L+ S N            L++L +L L+    L  L ++ +
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAE 368

Query: 340 ------SLELLDAENCKQLQFIP 356
                 SL+ LD      + +  
Sbjct: 369 MTTQMKSLQQLDISQ-NSVSYDE 390

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 40/242 (16%), Positives = 71/242 (29%), Gaps = 44/242 (18%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKS 239
            L   P+ +S   T L +S+  I E+ +S I  L+ L  L I+             +++ 
Sbjct: 11  GLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHN-----------RIQY 59

Query: 240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG----- 294
           L + V     +LE              + L    + ++         LK L +       
Sbjct: 60  LDISVFKFNQELEY-------------LDLSHNKLVKIS--CHPTVNLKHLDLSFNAFDA 104

Query: 295 ----------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELL 344
                     S L+ L LS    E           +  + L          E P+ L+  
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLL-VLGETYGEKEDPEGLQDF 163

Query: 345 DAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNEKANNE 404
           + E+   +    +    + +V    +      N    L      +  S   KL       
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 405 IL 406
            L
Sbjct: 224 NL 225

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 26/164 (15%)

Query: 192 NITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI-CKLKSLHVLVLDDCS 249
            + +L L    I+ +PS     + +L +L +    +L+ +S      L +L  L L  C 
Sbjct: 148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC- 206

Query: 250 KLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGG-------------- 294
            ++  P  L  +  ++ + +      E+   SF  L  LK L++                
Sbjct: 207 NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 295 SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK------DCSML 331
           +SL +LNL+ N+  SLP  + T L  L  LHL       DC +L
Sbjct: 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 48/196 (24%), Positives = 78/196 (39%), Gaps = 47/196 (23%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICKLKS 239
            L+E PQ I  N   L L E  IQ + +     L +LE L + R             ++ 
Sbjct: 65  GLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-----------SIRQ 113

Query: 240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSLR 298
           + V   +  + L               + L    +T +PS +F  L          S LR
Sbjct: 114 IEVGAFNGLASLNT-------------LELFDNWLTVIPSGAFEYL----------SKLR 150

Query: 299 QLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE-----LPQSLELLDAENCKQL 352
           +L L  N  ES+P+    ++  L  L L +   L  + E     L  +L+ L+   C  +
Sbjct: 151 ELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF-NLKYLNLGMC-NI 208

Query: 353 QFIPEI--LSGLEEVD 366
           + +P +  L GLEE++
Sbjct: 209 KDMPNLTPLVGLEELE 224

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 5e-07
 Identities = 50/309 (16%), Positives = 99/309 (32%), Gaps = 98/309 (31%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L+L    I  I      F ++ +L  L                  L +      N +R +
Sbjct: 80  LNLMENNIQMIQ--ADTFRHLHHLEVL-----------------QLGR------NSIRQI 114

Query: 61  HWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIR 115
                        F    +L  L L  + +  I      AF    KL+ + + N+  +  
Sbjct: 115 E---------VGAFNGLASLNTLELFDNWLTVI---PSGAFEYLSKLRELWLRNNP-IES 161

Query: 116 MPD--LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPI 173
           +P    +  P+L R +L     L  +              FEG  +L+            
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGA----------FEGLFNLKY----------- 200

Query: 174 KIDFSSCFNLTEFPQISG--NITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRL 230
            ++   C N+ + P ++    + +L +S     E+   S   L++L+KL++         
Sbjct: 201 -LNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN------- 251

Query: 231 STSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKD 289
                ++  +     D  + L               ++L    ++ LP   F  L  L +
Sbjct: 252 ----SQVSLIERNAFDGLASLVE-------------LNLAHNNLSSLPHDLFTPLRYLVE 294

Query: 290 LYIGGSSLR 298
           L++  +   
Sbjct: 295 LHLHHNPWN 303

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 63.1 bits (154), Expect = 6e-11
 Identities = 58/335 (17%), Positives = 113/335 (33%), Gaps = 76/335 (22%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           LDL    I+ +      F  + +L  L      +N     ISK+H ++    L   L+ L
Sbjct: 59  LDLQNNDISEL--RKDDFKGLQHLYALVL---VNNK----ISKIH-EKAFSPLRK-LQKL 107

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
           +  +     +P +  P +LV+L +  +++ ++    K  F                   S
Sbjct: 108 YISKNHLVEIPPNL-PSSLVELRIHDNRIRKV---PKGVF-------------------S 144

Query: 121 ETPNLERTNL-KNCINLTCVPSSVQNFNHLSM--LCFEGCKSLRSFPSNLHFMSPIKIDF 177
              N+    +  N +  +        F+ L +  L     K L   P +L          
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGA--FDGLKLNYLRISEAK-LTGIPKDL---------P 192

Query: 178 SSCFNLTEFPQISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICK 236
                L E          L L    IQ +    +   + L +L +    +++ +      
Sbjct: 193 E---TLNE----------LHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLS 238

Query: 237 -LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGG 294
            L +L  L LD+  KL R P  L  ++ ++ + L    IT++    F  +          
Sbjct: 239 FLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKR---- 293

Query: 295 SSLRQLNLSRNDSESL---PASITQLSQLRSLHLK 326
           +    ++L  N        PA+   ++   ++   
Sbjct: 294 AYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 36/192 (18%), Positives = 72/192 (37%), Gaps = 30/192 (15%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLST----SIC 235
            L   P+ IS + T L L    I E+     + L +L  L +       ++S     +  
Sbjct: 44  GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN----KISKIHEKAFS 99

Query: 236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGG 294
            L+ L  L +   + L   P  L    S+  + +    I ++P   F+ L          
Sbjct: 100 PLRKLQKLYISK-NHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGL---------- 146

Query: 295 SSLRQLNLSRN--DSESLPASITQLSQLRSLHLKDCSMLSSLP-ELPQSLELLDAENCKQ 351
            ++  + +  N  ++           +L  L + +   L+ +P +LP++L  L  ++  +
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDLPETLNELHLDHN-K 204

Query: 352 LQFIPE-ILSGL 362
           +Q I    L   
Sbjct: 205 IQAIELEDLLRY 216

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 67/386 (17%), Positives = 119/386 (30%), Gaps = 63/386 (16%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           +DLS   I    L+  +F+ + +L+FLK    E     ++I           L + L  L
Sbjct: 35  VDLSLNSIAE--LNETSFSRLQDLQFLKV---EQQTPGLVIRNNTFRG----LSS-LIIL 84

Query: 61  HWHEYPSKALPFD-FEP-ENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQ--Y 112
                    L    F    NL  L L     +         F     L+ + + ++    
Sbjct: 85  KLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKK 143

Query: 113 LIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           +               +L     +  +        +     F     LR     L  M+ 
Sbjct: 144 IQPASFFLNMRRFHVLDLTF-NKVKSICEED--LLNFQGKHFT---LLRLSSITLQDMNE 197

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST 232
             + +  C N  +      +IT L LS    +E  +             +  +       
Sbjct: 198 YWLGWEKCGNPFKNT----SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG 253

Query: 233 SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLY 291
           S     +           LE           VK   L ++ I  L    F++   L+ L 
Sbjct: 254 SSFGHTNFKDPDNFTFKGLEA--------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305

Query: 292 IGG--------------SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE 336
           +                + L +LNLS+N   S+ + +   L +L  L L     + +L +
Sbjct: 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRALGD 364

Query: 337 -----LPQSLELLDAENCKQLQFIPE 357
                LP  L+ L  +   QL+ +P+
Sbjct: 365 QSFLGLPN-LKELALDTN-QLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 54/353 (15%), Positives = 111/353 (31%), Gaps = 60/353 (16%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L L+   +    LS   F  + +L  L       N     I K+        +      L
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLR---DNN----IKKIQPASFFLNMRR-FHVL 159

Query: 61  H-----WHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR 115
                       + L  +F+ ++   L L    +  +       + L +    N      
Sbjct: 160 DLTFNKVKSICEEDL-LNFQGKHFTLLRLSSITLQDM-----NEYWLGWEKCGNPFKNTS 213

Query: 116 MPDLSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK 174
           +  L  + N                +    +    + +      +  +  S+    +   
Sbjct: 214 ITTLDLSGN----------GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD 263

Query: 175 IDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTS 233
            D  +   L      +  +    LS++ I  +  S+    T+LE+L + +   + ++  +
Sbjct: 264 PDNFTFKGLE-----ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDN 317

Query: 234 IC-KLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPS-SFANLEGLKDL 290
               L  L  L L   + L      + E ++ ++ + L    I  L   SF  L      
Sbjct: 318 AFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL------ 370

Query: 291 YIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK------DCSMLSSLPE 336
                +L++L L  N  +S+P  I  +L+ L+ + L        C  +  L  
Sbjct: 371 ----PNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 419

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 30/187 (16%), Positives = 65/187 (34%), Gaps = 27/187 (14%)

Query: 175 IDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTS 233
               +   L + P++  ++  + LS  +I E+   S   L +L+ L + +      +  +
Sbjct: 15  AICINR-GLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN 73

Query: 234 IC-KLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITEL---PSSFANLEGLK 288
               L SL +L LD  ++  +        + +++ ++L +  +       + F  L  L+
Sbjct: 74  TFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE 132

Query: 289 DLYIGG---------------SSLRQLNLSRNDSESLPASI---TQLSQLRSLHLKDCSM 330
            L +                      L+L+ N  +S+        Q      L L     
Sbjct: 133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL-SSIT 191

Query: 331 LSSLPEL 337
           L  + E 
Sbjct: 192 LQDMNEY 198

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 48/332 (14%), Positives = 102/332 (30%), Gaps = 70/332 (21%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           L+    K+T + +S       P L +L       N     ++++ +          L  L
Sbjct: 111 LNCDTNKLTKLDVS-----QNPLLTYLNCA---RNT----LTEIDVSH----NTQ-LTEL 153

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
             H               L  L+  ++K+ ++   + +   L  ++   +   I   DL+
Sbjct: 154 DCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNK--LLNRLNCDTNN--ITKLDLN 209

Query: 121 ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
           +   L   +  +              N L+ +       L  F  +       ++D S+ 
Sbjct: 210 QNIQLTFLDCSS--------------NKLTEIDVTPLTQLTYF--DCSVNPLTELDVSTL 253

Query: 181 FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL 240
             LT    I  ++ ++ L+              T L       C ++K L   +     L
Sbjct: 254 SKLTTLHCIQTDLLEIDLTH------------NTQLIYFQAEGCRKIKELD--VTHNTQL 299

Query: 241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG------ 294
           ++L       +      L +   +  + L  T +TEL    ++   LK L          
Sbjct: 300 YLLDCQAA-GITELD--LSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF 354

Query: 295 ------SSLRQLNLSRNDSESLPASITQLSQL 320
                  +L     +   + ++P      + L
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 53.9 bits (130), Expect = 9e-08
 Identities = 33/190 (17%), Positives = 66/190 (34%), Gaps = 25/190 (13%)

Query: 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL 251
            +T L    ++I ++   IE LT L KL       +  L   + +  +L  L  D   KL
Sbjct: 43  TLTSLDCHNSSITDMTG-IEKLTGLTKLICTSN-NITTL--DLSQNTNLTYLACDSN-KL 97

Query: 252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG-----------SSLRQL 300
                 +  +  +  ++ +   +T+L    +    L  L               + L +L
Sbjct: 98  TNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTEL 153

Query: 301 NLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP-ELPQSLELLDAENCKQLQFIP-EI 358
           +   N   +    +T  +QL +L       ++ L     + L  L+ +    +  +    
Sbjct: 154 DCHLNKKITKLD-VTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCDTN-NITKLDLNQ 210

Query: 359 LSGLEEVDAS 368
              L  +D S
Sbjct: 211 NIQLTFLDCS 220

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 52/252 (20%), Positives = 83/252 (32%), Gaps = 50/252 (19%)

Query: 135 NLTCVPSSVQ--------NFNHLSML---CFEGCKSLR--SFPSNLHFMSPIKIDFSSCF 181
            LT VP+ +           N L  L    F+    L   S  SN    S       S F
Sbjct: 18  GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL--SFKGCCSQSDF 75

Query: 182 NLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLS--TSICKLKS 239
             T       ++  L LS   +  + S+   L  LE L       LK++S  +    L++
Sbjct: 76  GTT-------SLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 127

Query: 240 LHVLVLDDCSKLERFPE-ILEKMESVKCISLER-TAITELPS-SFANLEGLKDLYIGG-- 294
           L  L +            I   + S++ + +   +         F  L  L  L +    
Sbjct: 128 LIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186

Query: 295 ------------SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE----- 336
                       SSL+ LN+S N+  SL       L+ L+ L     + + +  +     
Sbjct: 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY-SLNHIMTSKKQELQH 245

Query: 337 LPQSLELLDAEN 348
            P SL  L+   
Sbjct: 246 FPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 48/310 (15%), Positives = 90/310 (29%), Gaps = 91/310 (29%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQG-LEYLPNELRY 59
           L+L   K+ S+      F  +  L  L       NG    +S             + L+Y
Sbjct: 33  LELESNKLQSLP--HGVFDKLTQLTKLSLS---SNG----LSFKGCCSQSDFGTTS-LKY 82

Query: 60  LHWHEYPSKALPFDFEP-ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD 118
           L         +  +F   E L  L+  +S + Q+ E     F                  
Sbjct: 83  LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--SVF------------------ 122

Query: 119 LSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDF 177
                NL   ++ +  +     + +    + L +L   G     +F  ++         F
Sbjct: 123 -LSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---------F 171

Query: 178 SSCFNLTEFPQISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICK 236
           +   NLT           L LS+  ++++  +    L++L+ L ++              
Sbjct: 172 TELRNLTF----------LDLSQCQLEQLSPTAFNSLSSLQVLNMSH-----------NN 210

Query: 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGGS 295
             SL        + L+              +      I         +           S
Sbjct: 211 FFSLDTFPYKCLNSLQV-------------LDYSLNHIMTSKKQELQHFP---------S 248

Query: 296 SLRQLNLSRN 305
           SL  LNL++N
Sbjct: 249 SLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 29/141 (20%)

Query: 247 DCS--KLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGG--------- 294
            C+   L   P  +    S   + LE   +  LP   F  L  L  L +           
Sbjct: 13  RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

Query: 295 -------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELP-----QSLE 342
                  +SL+ L+LS N   ++ ++   L QL  L  +  + L  + E       ++L 
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLI 129

Query: 343 LLDAENCKQLQFIPE-ILSGL 362
            LD  +    +     I +GL
Sbjct: 130 YLDISHT-HTRVAFNGIFNGL 149

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 42/311 (13%), Positives = 88/311 (28%), Gaps = 38/311 (12%)

Query: 78  NLVKLNLPYSKVVQIWEGKKRAF-----KLKYVDIHNSQYLIRMPDLSE----TPNLERT 128
           NL +L+L  S V  +       F      L  ++I      +    L       PNL+  
Sbjct: 157 NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSL 216

Query: 129 NLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK-----IDFSSCFNL 183
            L   + L  + + +Q    L  L   G  +             +         S  ++ 
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDA 276

Query: 184 T-----EFPQISGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSICK 236
                     +   +T L LS   +Q  ++   +     L++L++   +    L      
Sbjct: 277 VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAST 336

Query: 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANL--EGLKDLYIGG 294
            K L  L +         P +    + +  +S+    +  +      +    L  +    
Sbjct: 337 CKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR 396

Query: 295 SSLRQLNLSRNDS------------ESLPASITQLSQLRSLHLKDC---SMLSSLPELPQ 339
            ++ +  L   +                 A +     LR L L       +   +    +
Sbjct: 397 PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAK 456

Query: 340 SLELLDAENCK 350
            +E+L      
Sbjct: 457 KMEMLSVAFAG 467

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 47/295 (15%), Positives = 88/295 (29%), Gaps = 41/295 (13%)

Query: 123 PNLERTNLKNCINLTC--VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC 180
            N +   L +C   +   + +      +L  L              L           + 
Sbjct: 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP------DTY 183

Query: 181 FNLTE--FPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK 238
            +L       ++  ++   L                NL+ L +NR + L++L+T + +  
Sbjct: 184 TSLVSLNISCLASEVSFSALERLV--------TRCPNLKSLKLNRAVPLEKLATLLQRAP 235

Query: 239 SLHVLVLDDCSK------LERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292
            L  L     +              L   + ++C+S             A    L  +Y 
Sbjct: 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD---------AVPAYLPAVYS 286

Query: 293 GGSSLRQLNLSRND--SESLPASITQLSQLRSLHLKDC---SMLSSLPELPQSLELLDAE 347
             S L  LNLS     S  L   + Q  +L+ L + D    + L  L    + L  L   
Sbjct: 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVF 346

Query: 348 NCKQLQFIPEIL---SGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLNE 399
             +     P +     GL  V     +  + L     + +A +  +  N   +  
Sbjct: 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 51/286 (17%), Positives = 86/286 (30%), Gaps = 46/286 (16%)

Query: 123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFN 182
           P +    LK   +          +       +   +++ S  + L      +I       
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGW---GGYVYPWIEAMSSSYTWLE-----EIRLKRM-- 115

Query: 183 LTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRL--KRLSTSICKLKSL 240
                     +TD  L   A        +   N + L ++ C       L+      ++L
Sbjct: 116 ---------VVTDDCLELIA--------KSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158

Query: 241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQL 300
             L L +    +     L         SL    I+ L S   +   L+ L     +L+ L
Sbjct: 159 KELDLRESDVDDVSGHWLSHF-PDTYTSLVSLNISCLASEV-SFSALERLVTRCPNLKSL 216

Query: 301 NLSRNDS-ESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEIL 359
            L+R    E L   + +  QL  L     +              L    CK+L+     L
Sbjct: 217 KLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL--SGCKELR----CL 270

Query: 360 SGLEEVDASVLEKA-------TFLN-SAFTLNSACVKFVFSNCLKL 397
           SG  +   + L          T LN S  T+ S  +  +   C KL
Sbjct: 271 SGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKL 316

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 5e-10
 Identities = 34/255 (13%), Positives = 74/255 (29%), Gaps = 31/255 (12%)

Query: 123 PNLERTNLKNCINLTC--VPSSVQNFNHLSMLCFEGC-------KSLRSFPSNLHFMSPI 173
            +LE   L  C   T   + S V +   +  L  E         K L     +   +  +
Sbjct: 138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVL 197

Query: 174 KIDFSSCFNLT-----EFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLK 228
               +    ++        +   ++  + + +  I E+    +   NLE+          
Sbjct: 198 NFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI 257

Query: 229 RLSTSICKLKSLHVLVLDDCSKL--ERFPEILEKMESVKCISLERTAITELPSSFANLEG 286
            +      L     L     S +     P +      ++ + L    +          E 
Sbjct: 258 GMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET--------ED 309

Query: 287 LKDLYIGGSSLRQLNLSRNDS-ESLPASITQLSQLRSLHLKDCSMLSSLPELP-----QS 340
              L     +L  L          L        QL+ L ++  +    + +       + 
Sbjct: 310 HCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRG 369

Query: 341 LELLDAENCKQLQFI 355
           L  L A+ C++L+++
Sbjct: 370 LIAL-AQGCQELEYM 383

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.9 bits (137), Expect = 1e-08
 Identities = 39/249 (15%), Positives = 85/249 (34%), Gaps = 32/249 (12%)

Query: 123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP--IKIDFSSC 180
           PNLE    +N I    +    Q    L  L  E     +        +S   +      C
Sbjct: 318 PNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377

Query: 181 FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS------I 234
             L        +IT+      +++ + + ++ L +   + ++R  R+  L         +
Sbjct: 378 QELEYMAVYVSDITN-----ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432

Query: 235 CKLKSLHVLVLDDCSKL---ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY 291
              K L                   I +   +V+ + L     ++        EGL +  
Sbjct: 433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESD--------EGLMEFS 484

Query: 292 IGGSSLRQLNLSRND--SESLPASITQLSQLRSLHLKDCSMLSSLPEL------PQSLEL 343
            G  +L++L +        ++ A++T+L  LR L ++      +  +L        ++EL
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544

Query: 344 LDAENCKQL 352
           + +    ++
Sbjct: 545 IPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 55.3 bits (133), Expect = 4e-08
 Identities = 39/246 (15%), Positives = 76/246 (30%), Gaps = 37/246 (15%)

Query: 123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSN-LHFMSPIKIDFSSCF 181
            +L    + +   L  V    +   +L   C          P   ++ + P K+      
Sbjct: 220 RSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 182 NLT-----EFPQISGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSI 234
            +           +  I  L L    ++  +  + I+   NLE L     +  + L    
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA 338

Query: 235 CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG 294
              K L  L ++  +  +              +  E   +++         GL  L  G 
Sbjct: 339 QYCKQLKRLRIERGADEQG-------------MEDEEGLVSQ--------RGLIALAQGC 377

Query: 295 SSLRQLNLSRND-----SESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENC 349
             L  + +  +D      ES+   +  L   R + L     ++ LP L   +  L    C
Sbjct: 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP-LDNGVRSL-LIGC 435

Query: 350 KQLQFI 355
           K+L+  
Sbjct: 436 KKLRRF 441

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.2 bits (130), Expect = 1e-07
 Identities = 37/280 (13%), Positives = 88/280 (31%), Gaps = 22/280 (7%)

Query: 127 RTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-----HFMSPIKIDFSSCF 181
              +  C   T      + F +L  L  +G      F         +    +    ++  
Sbjct: 54  HVTMALCYTAT-PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR 112

Query: 182 NLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRL--KRLSTSICKLKS 239
            L        +   +I+S+  +  +  +     +LE L +++C       L + +   + 
Sbjct: 113 QLKSV-----HFRRMIVSDLDLDRLAKA--RADDLETLKLDKCSGFTTDGLLSIVTHCRK 165

Query: 240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQ 299
           +  L++++ S  E+  + L ++ +    SLE         +  + + L+ +     SL  
Sbjct: 166 IKTLLMEESSFSEKDGKWLHEL-AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224

Query: 300 LNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFI-PEI 358
           + +   +   L       + L        +    +PE   +L          L ++ P  
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 359 LSGLEEVDASVLEKATFLN-SAFTLNSACVKFVFSNCLKL 397
           +  L         +   L+     L +     +   C  L
Sbjct: 285 MPIL----FPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.2 bits (144), Expect = 1e-09
 Identities = 60/332 (18%), Positives = 107/332 (32%), Gaps = 88/332 (26%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           LDL   KIT I      F N+ NL  L      +N     ISK+        L   L  L
Sbjct: 57  LDLQNNKITEI--KDGDFKNLKNLHTLILI---NNK----ISKIS-PGAFAPLVK-LERL 105

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLS 120
           +  +   K LP    P+ L +L +  +++ ++   +K  F                   +
Sbjct: 106 YLSKNQLKELPEKM-PKTLQELRVHENEITKV---RKSVF-------------------N 142

Query: 121 ETPNLERTNL-KNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS 179
               +    L  N +  + + +            F+G K L              I  + 
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGA----------FQGMKKLSY------------IRIAD 180

Query: 180 CFNLTEFPQIS-GNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICK- 236
             N+T  PQ    ++T+L L    I +V + S++ L NL KL ++    +  +       
Sbjct: 181 T-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN 238

Query: 237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-------FANLEGLKD 289
              L  L L++  KL + P  L   + ++ + L    I+ + S+                
Sbjct: 239 TPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 297

Query: 290 LYIGG----------------SSLRQLNLSRN 305
           + +                       + L   
Sbjct: 298 VSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 36/187 (19%), Positives = 78/187 (41%), Gaps = 19/187 (10%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSI-CKLK 238
            L + P+ +  +   L L    I E+     + L NL  L +    ++ ++S      L 
Sbjct: 42  GLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLV 100

Query: 239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSL 297
            L  L L   ++L+  PE + K  +++ + +    IT++    F  L  +  + +G + L
Sbjct: 101 KLERLYLSK-NQLKELPEKMPK--TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157

Query: 298 RQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIP 356
           +   +          +   + +L  + + D   ++++P+ LP SL  L  +   ++  + 
Sbjct: 158 KSSGIE-------NGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGN-KITKVD 208

Query: 357 E-ILSGL 362
              L GL
Sbjct: 209 AASLKGL 215

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 29/163 (17%), Positives = 63/163 (38%), Gaps = 22/163 (13%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINR-CMRLKRLSTSI-CKL 237
            L E P+ +   + +L + E  I +V  S+   L  +  + +    ++   +       +
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 238 KSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGG-- 294
           K L  + + D   +   P+ L    S+  + L+   IT++ + S   L  L  L +    
Sbjct: 171 KKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 227

Query: 295 ------------SSLRQLNLSRNDSESLPASITQLSQLRSLHL 325
                         LR+L+L+ N    +P  +     ++ ++L
Sbjct: 228 ISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 270

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 59.9 bits (146), Expect = 2e-09
 Identities = 48/298 (16%), Positives = 89/298 (29%), Gaps = 70/298 (23%)

Query: 101 KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL 160
            L+ + + NS     +     + +L   +L    +L+   +++ +    S L     K L
Sbjct: 78  GLESLFLSNSHINGSVSGFKCSASLTSLDLSRN-SLSGPVTTLTSLGSCSGL-----KFL 131

Query: 161 RSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ-EVPSSIEC---LTNL 216
               + L F   +    S    L        ++  L LS  +I                L
Sbjct: 132 NVSSNTLDFPGKV----SGGLKLN-------SLEVLDLSANSISGANVVGWVLSDGCGEL 180

Query: 217 EKLYINRCM--------RLKRLST-------------SICKLKSLHVLVLDDCSKLE-RF 254
           + L I+           R   L                +    +L  L +    KL   F
Sbjct: 181 KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDF 239

Query: 255 PEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGG---------------SSLR 298
              +     +K +++        +P     L+ L+ L +                  +L 
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 299 QLNLSRND-SESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFI 355
            L+LS N    ++P      S L SL L   +    LP    +L        + L+ +
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP--MDTL-----LKMRGLKVL 348

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 2e-07
 Identities = 55/311 (17%), Positives = 105/311 (33%), Gaps = 72/311 (23%)

Query: 101 KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLT-CVPSSVQNFNHLSMLCFEGCKS 159
            L+++D+ ++ +   +P L +   L+  ++     L+     ++     L +L     + 
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQF 259

Query: 160 LRSFP-SNLHFMSPIKIDFSSCFNLT-EFPQ-ISGNIT---DLILSETAIQ-EVPSSIEC 212
           +   P   L  +    +  +     T E P  +SG       L LS       VP     
Sbjct: 260 VGPIPPLPLKSLQ--YLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316

Query: 213 LTNLEKLYINRCMRLKRLS-----TSICKLKSLHVLVLDD--------------CSKLER 253
            + LE L ++        S      ++ K++ L VL L                 + L  
Sbjct: 317 CSLLESLALSSNN----FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372

Query: 254 F------------PEILE-KMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGG----- 294
                        P + +    +++ + L+    T ++P + +N   L  L++       
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432

Query: 295 ---------SSLRQLNLSRND-SESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELL 344
                    S LR L L  N     +P  +  +  L +L L     L+   E+P  L   
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFND-LTG--EIPSGL--- 486

Query: 345 DAENCKQLQFI 355
              NC  L +I
Sbjct: 487 --SNCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 49/259 (18%), Positives = 79/259 (30%), Gaps = 57/259 (22%)

Query: 117 PDLSETPNLERTNLKNCINLT-CVPSSVQNFNHLSMLC-----FEGCKSLRSFPSNLHFM 170
           P LS    L   +L     L+  +PSS+ + + L  L       EG       P  L ++
Sbjct: 412 PTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEG-----EIPQELMYV 465

Query: 171 SPIK-IDFSSCFNLT-EFPQISGNITDLI---LSETAIQ-EVPSSIECLTNLEKLYINRC 224
             ++ +      +LT E P    N T+L    LS   +  E+P  I  L NL  L ++  
Sbjct: 466 KTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524

Query: 225 MRLKRLSTSICKLKSLHVLVLDD-------------CSKLER-------FPEILEKMESV 264
                +   +   +SL  L L+               S               ++     
Sbjct: 525 SFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMK 584

Query: 265 KCISLERTAIT---ELPSSFANLEGLKDLYIGG--------------SSLRQLNLSRND- 306
           K        +            L       I                 S+  L++S N  
Sbjct: 585 KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644

Query: 307 SESLPASITQLSQLRSLHL 325
           S  +P  I  +  L  L+L
Sbjct: 645 SGYIPKEIGSMPYLFILNL 663

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 59.8 bits (144), Expect = 2e-09
 Identities = 53/351 (15%), Positives = 107/351 (30%), Gaps = 43/351 (12%)

Query: 39  IMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKR 98
           +  ++ H      ++  E   L         +        L+    P S   +  +G+ R
Sbjct: 236 LGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNR 295

Query: 99  AFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK 158
              +   D+  +    ++P  +       ++ +    L          +  +       +
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATD------E 349

Query: 159 SLRSFPSNLHFMSPIKIDFSSCFNLTEF-PQISGNITDLILSETAIQEVPSSIECLTNLE 217
            L     ++   + ++ +  SC  L E  P+    +  +IL   A+  +    E L    
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 218 KL-----------YINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKC 266
            L              R   L   S    +   + VL L     L      LE++  V  
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LEQLLLVTH 467

Query: 267 ISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLK 326
           + L    +  LP + A L            L  L  S N  E++   +  L +L+ L L 
Sbjct: 468 LDLSHNRLRALPPALAAL----------RCLEVLQASDNALENVD-GVANLPRLQELLLC 516

Query: 327 DCSMLSSLPELP-----QSLELLD------AENCKQLQFIPEILSGLEEVD 366
           +   L     +        L LL+       +     + + E+L  +  + 
Sbjct: 517 NNR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 58.5 bits (142), Expect = 2e-09
 Identities = 46/244 (18%), Positives = 98/244 (40%), Gaps = 14/244 (5%)

Query: 77  ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINL 136
            N +K+    S V      +     +  +    +  +  +  +    NL    LK+   +
Sbjct: 19  ANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTG-VTTIEGVQYLNNLIGLELKDN-QI 75

Query: 137 TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISG--NIT 194
           T + + ++N   ++ L   G   L++  +     S   +D +S   +T+   ++G  N+ 
Sbjct: 76  TDL-APLKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTST-QITDVTPLAGLSNLQ 132

Query: 195 DLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERF 254
            L L    I  + S +  LTNL+ L I    ++  L+  +  L  L  L  DD  K+   
Sbjct: 133 VLYLDLNQITNI-SPLAGLTNLQYLSIGNA-QVSDLT-PLANLSKLTTLKADDN-KISDI 188

Query: 255 PEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI 314
              L  + ++  + L+   I+++ S  AN   L  + +   ++    +  N++  +P  +
Sbjct: 189 SP-LASLPNLIEVHLKNNQISDV-SPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV 246

Query: 315 TQLS 318
              S
Sbjct: 247 KGPS 250

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 35/189 (18%), Positives = 71/189 (37%), Gaps = 24/189 (12%)

Query: 195 DLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERF 254
           + I   T I +V      L N  K  + +   +  L  S  +L  +     D+   ++  
Sbjct: 1   ESIQRPTPINQV-FPDPGLANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSL 56

Query: 255 PEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG-----------SSLRQLNLS 303
              ++   ++K + L    I++L S   +L  L++L +             + L +L L 
Sbjct: 57  -AGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLD 114

Query: 304 RNDSESLPASITQLSQLRSLHLKDC--SMLSSLPELPQSLELLDAENCKQLQFIPEI--L 359
            N+      S+  L  L  L +++     +  L  L   LE+LD     ++     +  L
Sbjct: 115 NNELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLS-KLEVLDLHGN-EITNTGGLTRL 171

Query: 360 SGLEEVDAS 368
             +  +D +
Sbjct: 172 KKVNWIDLT 180

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 43/218 (19%), Positives = 74/218 (33%), Gaps = 41/218 (18%)

Query: 77  ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNL-KNCIN 135
            N VK NL    V  +   +K    ++  +  NS  +  +  +    NL+  +L  N I 
Sbjct: 19  ANAVKQNLGKQSVTDL-VSQKELSGVQNFNGDNSN-IQSLAGMQFFTNLKELHLSHNQI- 75

Query: 136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISG-NIT 194
                S +     L+ L                     ++  +    L     I    ++
Sbjct: 76  -----SDLSPLKDLTKL--------------------EELSVNRN-RLKNLNGIPSACLS 109

Query: 195 DLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERF 254
            L L    +++   S+  L NLE L I    +LK +   +  L  L VL L    ++   
Sbjct: 110 RLFLDNNELRDT-DSLIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-EITNT 165

Query: 255 PEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI 292
              L +++ V  I L        P  +       +LYI
Sbjct: 166 GG-LTRLKKVNWIDLTGQKCVNEPVKY-----QPELYI 197

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 54/354 (15%), Positives = 101/354 (28%), Gaps = 105/354 (29%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYL 60
           LDLS  +IT I           NL+ L                  L        N +  +
Sbjct: 57  LDLSNNRITYIS--NSDLQRCVNLQAL-----------------VLTS------NGINTI 91

Query: 61  HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQY--LI 114
                   +  F     +L  L+L Y+ +  +       F     L ++++  + Y  L 
Sbjct: 92  -----EEDS--FSSLG-SLEHLDLSYNYLSNLSSS---WFKPLSSLTFLNLLGNPYKTLG 140

Query: 115 RMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK 174
                S    L+   + N    T +              F G   L              
Sbjct: 141 ETSLFSHLTKLQILRVGNMDTFTKIQRKD----------FAGLTFLEE------------ 178

Query: 175 IDFSSCFNLTEFPQIS----GNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKR 229
           ++  +  +L  +   S     N++ LIL       +     +  +++E L       L+ 
Sbjct: 179 LEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLE------LRD 231

Query: 230 LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKD 289
                     L     +   K   F            + +   ++ ++      +     
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRN----------VKITDESLFQVMKLLNQI----- 276

Query: 290 LYIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK------DCSMLSSLPE 336
                S L +L  SRN  +S+P  I  +L+ L+ + L        C  +  L  
Sbjct: 277 -----SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 325

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 29/201 (14%), Positives = 64/201 (31%), Gaps = 41/201 (20%)

Query: 192 NITDLILSETAIQEVPSSI--ECLTNLEKLYINRCMRLKRLSTSI-CKLKSLHVLVLDDC 248
           ++T L L     + +  +     LT L+ L +       ++       L  L  L +D  
Sbjct: 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184

Query: 249 SKLERFP-EILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGG------------ 294
             L+ +  + L+ +++V  + L       L          ++ L +              
Sbjct: 185 -DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

Query: 295 ----------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE-----LPQ 339
                      + R + ++      +   + Q+S L  L       L S+P+     L  
Sbjct: 244 TGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLT- 301

Query: 340 SLELLDAEN------CKQLQF 354
           SL+ +          C ++ +
Sbjct: 302 SLQKIWLHTNPWDCSCPRIDY 322

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 57/393 (14%), Positives = 120/393 (30%), Gaps = 57/393 (14%)

Query: 2   FLDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRY 59
            LDLS      + +    F N+  L FL     +   +            L  +  +L  
Sbjct: 125 HLDLSFNDFDVLPVCK-EFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVS 180

Query: 60  LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFK---------LKYVDIHNS 110
            H     +++L       N   L+L +            +           +K  D +  
Sbjct: 181 YHIKGGETESLQ----IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ 236

Query: 111 QYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNF--------NHLSMLCFEGCKSLRS 162
           + +  + +L+  P L    L++          +  F         ++  L          
Sbjct: 237 RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREE 296

Query: 163 FPSNLHFMSPIKIDFSSCFNLTEFPQISG------NITDLILSE-TAIQEVPSSIECLTN 215
           F  +   +  + I+           +         NI  L +S+   I  V       ++
Sbjct: 297 FTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS--PSS 354

Query: 216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDD--CSKLERFPEILEKMESVKCISLERTA 273
              L   + +    +      LK L  L+L         +   + + M S++ + +   +
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414

Query: 274 ITELPSS--FANLEGLKDLYIGG------------SSLRQLNLSRNDSESLPASITQLSQ 319
           +         A  E +  L +                ++ L+L  N   S+P  +T L  
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474

Query: 320 LRSLHLKDCSMLSSLPELP----QSLELLDAEN 348
           L+ L++   + L S+P+       SL+ +   +
Sbjct: 475 LQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 53.0 bits (127), Expect = 2e-07
 Identities = 48/374 (12%), Positives = 113/374 (30%), Gaps = 53/374 (14%)

Query: 3   LDLS--KITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGL-EYLPNELRY 59
           L LS   I+   L     + +  LR L+     HN +        LD  +  +  + L Y
Sbjct: 57  LSLSQNSISE--LRMPDISFLSELRVLRLS---HNRI------RSLDFHVFLFNQD-LEY 104

Query: 60  LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIHNSQYLIR 115
           L       + +       +L  L+L ++    +   K   F    KL ++ +  ++   +
Sbjct: 105 LDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCK--EFGNLTKLTFLGLSAAK-FRQ 160

Query: 116 MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI 175
           +  L          L + ++        ++    +            F  N  F   + +
Sbjct: 161 LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT-----VLHLVFHPNSLFSVQVNM 215

Query: 176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC 235
             ++  +L        NI     +   +    S +     L  + +       + S  + 
Sbjct: 216 SVNALGHLQLS-----NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270

Query: 236 KL---KSLHVLVLDDCS-----KLERFPEILEKMESVKCISLERTAITELPSSFANLEGL 287
           +    + +  L + + +       E F      ++S+    ++         +       
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEA------- 323

Query: 288 KDLYIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPELPQSLELLDA 346
             LY   + +    LS +D+  +        S    L+        S+ +   +L+ L  
Sbjct: 324 --LYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQT 381

Query: 347 ENC--KQLQFIPEI 358
                  L+   ++
Sbjct: 382 LILQRNGLKNFFKV 395

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 43/230 (18%), Positives = 69/230 (30%), Gaps = 44/230 (19%)

Query: 114 IRMPDLSETPNLERTNLKNCINLTCVPSSV-QNFNHLSMLCFEGCKSLRSFPSNLHFMSP 172
           +         NL    L +   L  + ++       L  L       LRS          
Sbjct: 47  VPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT----- 100

Query: 173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLS 231
               F     L            L L    +QE+   +   L  L+ LY+     L+ L 
Sbjct: 101 ----FHGLGRLHT----------LHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALP 145

Query: 232 TSI-CKLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPS-SFANLEGLK 288
                 L +L  L L   +++   PE     + S+  + L +  +  +   +F +L    
Sbjct: 146 DDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL---- 200

Query: 289 DLYIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK------DCSML 331
                   L  L L  N+  +LP      L  L+ L L       DC   
Sbjct: 201 ------GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 24/126 (19%)

Query: 247 DCS--KLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSLRQLNLS 303
            C    L+  P  +    + + I L    I+ +P+ SF              +L  L L 
Sbjct: 17  SCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRAC----------RNLTILWLH 64

Query: 304 RNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE-----LPQSLELLDAENCKQLQFIPE 357
            N    + A+  T L+ L  L L D + L S+       L + L  L  + C  LQ +  
Sbjct: 65  SNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR-LHTLHLDRC-GLQELGP 122

Query: 358 -ILSGL 362
            +  GL
Sbjct: 123 GLFRGL 128

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 39/223 (17%), Positives = 65/223 (29%), Gaps = 45/223 (20%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSSI--ECLTNLEKLYINRC-------------M 225
            L   PQ +      L LS   +  + +      LTNL  L ++                
Sbjct: 29  QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP 88

Query: 226 RLKRLSTSICKLKSLHVLVLDDCSKLERF-----------PEILEKMESVKCISLERTAI 274
            L+ L  S   L +L   +  D   LE                 E M  ++ + L +  I
Sbjct: 89  NLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

Query: 275 TELPS-SFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLK------ 326
           +  P     +   L         L  L+LS N  + LP   + +L       L       
Sbjct: 149 SRFPVELIKDGNKL-------PKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

Query: 327 --DCSMLSSLPELPQSLELLDAENCKQLQFI-PEILSGLEEVD 366
             DC +                +  + L  +  + L  +  +D
Sbjct: 202 ECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLD 244

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 33/205 (16%), Positives = 63/205 (30%), Gaps = 41/205 (20%)

Query: 158 KSLRSFPSN---------LHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS 208
           ++L + P +         L          ++    T        +T L L    + ++  
Sbjct: 20  RNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYT-------RLTQLNLDRAELTKLQV 72

Query: 209 SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE-ILEKMESVKCI 267
               L  L  L ++   +L+ L      L +L VL +    +L   P   L  +  ++ +
Sbjct: 73  DGT-LPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQEL 129

Query: 268 SLERTAITELPSS-FANLEGLKDLYIGG--------------SSLRQLNLSRNDSESLPA 312
            L+   +  LP         L+ L +                 +L  L L  N   ++P 
Sbjct: 130 YLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK 189

Query: 313 SITQLSQLRSLHLK------DCSML 331
                  L    L       +C +L
Sbjct: 190 GFFGSHLLPFAFLHGNPWLCNCEIL 214

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 23/108 (21%)

Query: 269 LERTAITELPSS-FANLEGLKDLYIGG------------SSLRQLNLSRNDSESLPASIT 315
           L    +     +       L  L +                L  L+LS N  +SLP    
Sbjct: 38  LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQ 97

Query: 316 QLSQLRSLHLKDCSMLSSLPE-----LPQSLELLD-AENCKQLQFIPE 357
            L  L  L +     L+SLP      L + L+ L    N  +L+ +P 
Sbjct: 98  TLPALTVLDVSFNR-LTSLPLGALRGLGE-LQELYLKGN--ELKTLPP 141

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 14/150 (9%)

Query: 192 NITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRL-STSICKLKSLHVLVLDD-- 247
           +++ LIL+   IQ +       L++L+KL       L  L +  I  LK+L  L +    
Sbjct: 77  HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNL 135

Query: 248 CSKLERFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSLRQLNLSRND 306
               +  PE    + +++ + L    I  +       L  +  L +       L+LS N 
Sbjct: 136 IQSFKL-PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL------SLDLSLNP 188

Query: 307 SESLPASITQLSQLRSLHLKDCSMLSSLPE 336
              +     +  +L+ L L D + L S+P+
Sbjct: 189 MNFIQPGAFKEIRLKELAL-DTNQLKSVPD 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 23/175 (13%)

Query: 182 NLTEFPQ-ISGNITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSIC-KLK 238
            LT  P  I  +   L L    +  +PS     LT L  LY+N   +L+ L   I  +LK
Sbjct: 27  KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELK 85

Query: 239 SLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGG-- 294
           +L  L + D  KL+  P  + +++ ++  + L+R  +  LP   F +L  L  L +G   
Sbjct: 86  NLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144

Query: 295 ------------SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE 336
                       +SL++L L  N  + +P     +L++L++L L + + L  +PE
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 39/161 (24%), Positives = 72/161 (44%), Gaps = 25/161 (15%)

Query: 192 NITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSI-CKLKSLHVLVLDDCS 249
            +  L L++  +Q +P+ I + L NLE L++    +L+ L   +  +L +L  L LD  +
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDR-N 119

Query: 250 KLERFPE-ILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGG------------- 294
           +L+  P  + + +  +  +SL    +  LP   F  L  LK+L +               
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDK 179

Query: 295 -SSLRQLNLSRNDSESLPASI-TQLSQLRSLHLK----DCS 329
            + L+ L L  N  + +P      L +L+ L L+    DC+
Sbjct: 180 LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.3 bits (129), Expect = 9e-08
 Identities = 40/247 (16%), Positives = 74/247 (29%), Gaps = 73/247 (29%)

Query: 139 VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTE-----FPQISGNI 193
           +  +      ++ L   G         NL    PI    ++   L          + G I
Sbjct: 42  LCDTDTQTYRVNNLDLSGL--------NLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI 93

Query: 194 ----------TDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLS----TSICKLK 238
                       L ++ T +   +P  +  +  L  L  +       LS     SI  L 
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN----ALSGTLPPSISSLP 149

Query: 239 SLHVLVLDD-------------CSKLERF------------PEILEKMESVKCISLERTA 273
           +L  +  D               SKL               P     + ++  + L R  
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNM 208

Query: 274 IT-ELPSSFANLEGLKDLYIGG-------------SSLRQLNLSRND-SESLPASITQLS 318
           +  +    F + +  + +++                +L  L+L  N    +LP  +TQL 
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 319 QLRSLHL 325
            L SL++
Sbjct: 269 FLHSLNV 275

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 9e-08
 Identities = 36/244 (14%), Positives = 84/244 (34%), Gaps = 38/244 (15%)

Query: 77  ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINL 136
              +K NL    V      +     +  +  +NS  +  +  +   PN+ +  L      
Sbjct: 24  AETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKSVQGIQYLPNVTKLFL------ 75

Query: 137 TCVPSSVQNFNHLSMLC-FEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISG--NI 193
                   N N L+ +      K+L              +       + +   +     +
Sbjct: 76  --------NGNKLTDIKPLANLKNLG------------WLFLDEN-KVKDLSSLKDLKKL 114

Query: 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253
             L L    I ++ + +  L  LE LY+    ++  ++  + +L  L  L L+D  ++  
Sbjct: 115 KSLSLEHNGISDI-NGLVHLPQLESLYLGNN-KITDIT-VLSRLTKLDTLSLEDN-QISD 170

Query: 254 FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS 313
               L  +  ++ + L +  I++L  + A L+ L  L +         ++   +  +P +
Sbjct: 171 IVP-LAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 314 ITQL 317
           +   
Sbjct: 229 VKNT 232

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 48/250 (19%), Positives = 88/250 (35%), Gaps = 40/250 (16%)

Query: 3   LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW 62
            +L K +      Q    + ++  +      ++     I  V   QG++YLPN +  L  
Sbjct: 29  DNLKKKSVTDAVTQN--ELNSIDQIIAN---NSD----IKSV---QGIQYLPN-VTKLFL 75

Query: 63  HEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSET 122
           +      +      +NL  L L  +KV  +    K   KLK + + ++  +  +  L   
Sbjct: 76  NGNKLTDIKPLANLKNLGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNG-ISDINGLVHL 133

Query: 123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFN 182
           P LE   L N   +T + + +     L  L  E  +              I  D      
Sbjct: 134 PQLESLYLGNN-KITDI-TVLSRLTKLDTLSLEDNQ--------------IS-DIVPLAG 176

Query: 183 LTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHV 242
           LT        + +L LS+  I ++  ++  L NL+ L +     L +       L   + 
Sbjct: 177 LT-------KLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNT 228

Query: 243 LVLDDCSKLE 252
           +   D S + 
Sbjct: 229 VKNTDGSLVT 238

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 42/252 (16%), Positives = 84/252 (33%), Gaps = 34/252 (13%)

Query: 117 PDLSETPNLERTNLKNC---INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPI 173
            D+ ++ +L+R  ++       +      V   + L  L  E  +   + P  L   +  
Sbjct: 62  TDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121

Query: 174 KI---DFSSCFNLTEFPQISG-------NITDLILSETAIQEVP-SSIECLTNLEKLYI- 221
            +   +  +    T    ++         +  L +++          +     L  L + 
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS 181

Query: 222 -NRCMRLKRLSTSIC--KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP 278
            N  +  + L +++C  K  +L VL L +   +E    +   +      +  R  +  L 
Sbjct: 182 DNPELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSAL------AAARVQLQGLD 234

Query: 279 SSFANLEGLKDLYI--GGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP- 335
            S  +L            S L  LNLS    + +P  +   ++L  L L     L   P 
Sbjct: 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLSVLDLSYNR-LDRNPS 291

Query: 336 --ELPQSLELLD 345
             ELP  +  L 
Sbjct: 292 PDELP-QVGNLS 302

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 29/189 (15%), Positives = 54/189 (28%), Gaps = 33/189 (17%)

Query: 213 LTNLEKLYINRCMRLKRLSTSI--CKLKSLHVLVLDDCSKLERFPEILE----KMESVKC 266
           ++ L++L +            +       L++L L + S   R   + E        +K 
Sbjct: 94  ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKV 153

Query: 267 ISLERTAITELP-SSFANLEGLKDLYIGG------------------SSLRQLNLSRNDS 307
           +S+ +                L  L +                     +L+ L L     
Sbjct: 154 LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGM 213

Query: 308 ESLP----ASITQLSQLRSLHLKDCSMLSSLPEL----PQSLELLDAENCKQLQFIPEIL 359
           E+      A      QL+ L L   S+  +        P  L  L+       Q    + 
Sbjct: 214 ETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP 273

Query: 360 SGLEEVDAS 368
           + L  +D S
Sbjct: 274 AKLSVLDLS 282

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 34/239 (14%), Positives = 80/239 (33%), Gaps = 24/239 (10%)

Query: 131 KNCINLTCV--PSSVQNFNHLSMLCFEGCKSLRS--FPSNLHFMSPIKIDFSSCFNLTEF 186
           K    L  V     ++N        F+GC +L+           +P  +  +   ++T  
Sbjct: 98  KGKQTLEKVILSEKIKNIEDA---AFKGCDNLKICQIRKKT---APNLLPEALADSVTAI 151

Query: 187 PQISGNITDLILSETAIQEVPSSIECLTNLEKLYI-NRCMRLKRLSTSIC-KLKSLHVLV 244
             I    +D    +   +   + IE    LE         +L+        + + ++ L 
Sbjct: 152 -FIPLGSSDAYRFKNRWEHF-AFIEG-EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLT 208

Query: 245 LDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGGSSLRQLNLS 303
           ++       F  I + M ++  + + +T  T +P   FA  + L  + +   +L+ +   
Sbjct: 209 IEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL-PHNLKTIGQR 267

Query: 304 R-NDSESLPASITQLSQLRSLHL---KDCSMLSSLPELPQSLELLDA---ENCKQLQFI 355
             ++   L  ++   + + ++       C  L  +      +  L      N    + I
Sbjct: 268 VFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 26/183 (14%)

Query: 183 LTEFP-QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLH 241
              FP           L + ++ +  +  E L +++++  N    +K +   I  L ++ 
Sbjct: 10  KQIFPDDAFAETIKANLKKKSVTDAVTQNE-LNSIDQIIANNS-DIKSVQ-GIQYLPNVR 66

Query: 242 VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDLYIGGSSLRQL 300
            L L   +KL      L+++ ++  + L    +  LP+  F  L          ++L++L
Sbjct: 67  YLALGG-NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKL----------TNLKEL 114

Query: 301 NLSRNDSESLPASI-TQLSQLRSLHLKDCSMLSSLPE-----LPQSLELLDAENCKQLQF 354
            L  N  +SLP  +  +L+ L  L+L   + L SLP+     L   L  LD  +  QLQ 
Sbjct: 115 VLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTN-LTELDL-SYNQLQS 171

Query: 355 IPE 357
           +PE
Sbjct: 172 LPE 174

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 38/233 (16%), Positives = 65/233 (27%), Gaps = 37/233 (15%)

Query: 132 NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISG 191
           +       P          ++ F   +S    P   HF         S F +      + 
Sbjct: 53  DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHF---------SPFRVQHMDLSNS 103

Query: 192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL 251
            I    L               + L+ L +        +  ++ K  +L  L L  CS  
Sbjct: 104 VIEVSTLHGIL--------SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF 155

Query: 252 --ERFPEILEKMESVKCISLERTA-ITELPSSFANLEGLKD-LYIGGSSLRQLNLSRN-- 305
                  +L     +  ++L      TE        + ++  +     ++ QLNLS    
Sbjct: 156 SEFALQTLLSSCSRLDELNLSWCFDFTE--------KHVQVAVAHVSETITQLNLSGYRK 207

Query: 306 --DSESLPASITQLSQLRSLHLKDCSMLS--SLPEL--PQSLELLDAENCKQL 352
                 L   + +   L  L L D  ML      E      L+ L    C  +
Sbjct: 208 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 260

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 36/243 (14%), Positives = 82/243 (33%), Gaps = 43/243 (17%)

Query: 123 PNLERTNLKNC-INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK-IDFSSC 180
             ++  +L N  I ++ +   +   + L  L  EG +      + L   S +  ++ S C
Sbjct: 93  FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC 152

Query: 181 FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMR-----LKRLSTSIC 235
              +E                A+Q +   +   + L++L ++ C       ++     + 
Sbjct: 153 SGFSE---------------FALQTL---LSSCSRLDELNLSWCFDFTEKHVQVAVAHVS 194

Query: 236 KLKSLHVLVLDDCSKL---ERFPEILEKMESVKCISLER-TAITELPSSFANLEGLKDLY 291
           +  ++  L L    K         ++ +  ++  + L     +      F     L    
Sbjct: 195 E--TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFQLN--- 247

Query: 292 IGGSSLRQLNLSRND--SESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENC 349
                L+ L+LSR           + ++  L++L +       +L  L ++L  L   NC
Sbjct: 248 ----YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NC 302

Query: 350 KQL 352
              
Sbjct: 303 SHF 305

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/166 (13%), Positives = 64/166 (38%), Gaps = 18/166 (10%)

Query: 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253
            +L      I+++ +++  L   + L ++    ++++S S+  +++L +L L     +++
Sbjct: 28  VELHGMIPPIEKMDATLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKK 84

Query: 254 FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-- 311
              +    ++++ + +    I        +L G++ L     +LR L +S N   +    
Sbjct: 85  IENLDAVADTLEELWISYNQIA-------SLSGIEKLV----NLRVLYMSNNKITNWGEI 133

Query: 312 ASITQLSQLRSLHLKD--CSMLSSLPELPQSLELLDAENCKQLQFI 355
             +  L +L  L L                   +   +    L+ +
Sbjct: 134 DKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 24/117 (20%)

Query: 262 ESVKCISLERTAITELPS-SFANLEGLKDLYIGG--------------SSLRQLNLSRND 306
           E++  I LE+  I  +P  +F+  + L+ + +                 SL  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 307 SESLPASI-TQLSQLRSLHLKDCSMLSSLPE-----LPQSLELLDAENCKQLQFIPE 357
              LP S+   L  L+ L L + + ++ L       L  +L LL   +  +LQ I +
Sbjct: 92  ITELPKSLFEGLFSLQLLLL-NANKINCLRVDAFQDLH-NLNLLSLYD-NKLQTIAK 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 25/117 (21%)

Query: 263 SVKCISLERTAITELPSS--FANLEGLKDLYIGG--------------SSLRQLNLSRND 306
               + L     T L ++  F  L  L+ +                  S + ++ L+ N 
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92

Query: 307 SESLPASI-TQLSQLRSLHLKDCSMLSSLPE-----LPQSLELLDAENCKQLQFIPE 357
            E++   +   L  L++L L   + ++ +       L   + LL   +  Q+  +  
Sbjct: 93  LENVQHKMFKGLESLKTLML-RSNRITCVGNDSFIGLSS-VRLLSLYDN-QITTVAP 146

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	635
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.98
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.98
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.98
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.97
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.97
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.97
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.94
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.87
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.82
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.82
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.8
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.8
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.77
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.76
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.64
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.62
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.62
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.62
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.62
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.6
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.6
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.59
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.59
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.58
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.46
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.45
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.44
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.43
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.43
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.42
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.4
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.32
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.25
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.2
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.19
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.18
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.13
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.97
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.86
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.82
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.77
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.61
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.42
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.16
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.02
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.02
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.73
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.4
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.3
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.08
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.23

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5e-37  Score=355.76  Aligned_cols=333  Identities=20%  Similarity=0.227  Sum_probs=272.1

Q ss_pred             CCcccCCCccceEeecCCCCCC-CCCCC-C-CCCCceEEEcCCCCCc-cccccCCCCC-CCcEEEccCCCCCCCCC-CCC
Q 006695           47 DQGLEYLPNELRYLHWHEYPSK-ALPFD-F-EPENLVKLNLPYSKVV-QIWEGKKRAF-KLKYVDIHNSQYLIRMP-DLS  120 (635)
Q Consensus        47 ~~~l~~l~~~L~~L~l~~~~l~-~lp~~-~-~l~~L~~L~L~~n~l~-~l~~~~~~l~-~L~~L~Ls~n~~~~~~p-~l~  120 (635)
                      |..+..+++ |++|++++|.+. .+|.. + .+++|++|++++|.+. .+|..+..++ +|++|++++|.+...+| .+.
T Consensus       311 p~~~~~l~~-L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~  389 (768)
T 3rgz_A          311 PPFFGSCSL-LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC  389 (768)
T ss_dssp             CGGGGGCTT-CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTT
T ss_pred             chHHhcCCC-ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhh
Confidence            444455544 666666666665 56654 3 5666777777777666 5666666665 67777777776655444 344


Q ss_pred             C--CCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCccc---CCcc
Q 006695          121 E--TPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQIS---GNIT  194 (635)
Q Consensus       121 ~--l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~---~~L~  194 (635)
                      .  +++|++|++++|...+.+|..++.+++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..+   ++|+
T Consensus       390 ~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~  469 (768)
T 3rgz_A          390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE  469 (768)
T ss_dssp             CSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             hcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence            4  7789999999988888889999999999999999988777777766 78999999999987776777544   6899


Q ss_pred             eEEecccccc-ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695          195 DLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA  273 (635)
Q Consensus       195 ~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  273 (635)
                      +|++++|.++ .+|..++.+++|++|++++|++.+.+|..++.+++|++|+|++|.+.+.+|..++.+++|+.|++++|.
T Consensus       470 ~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             EEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            9999999998 678889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc-ccCchhcccccc------------------------------------------------------------hhhcc
Q 006695          274 IT-ELPSSFANLEGL------------------------------------------------------------KDLYI  292 (635)
Q Consensus       274 l~-~lp~~~~~l~~L------------------------------------------------------------~~l~~  292 (635)
                      ++ .+|..+..+..+                                                            +..+.
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            98 778766543211                                                            11234


Q ss_pred             CCCCccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCccccchh
Q 006695          293 GGSSLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDAS  368 (635)
Q Consensus       293 ~~~~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l  368 (635)
                      .+++|+.|||++|++. .+|..++++++|+.|+|++|++.+.+|..   +++|+.||+++|...+.+|..+..++.|+.+
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            5688999999999985 78999999999999999999999999974   5789999999999999999999999999999


Q ss_pred             hhhhhhhccccc
Q 006695          369 VLEKATFLNSAF  380 (635)
Q Consensus       369 ~L~~n~~~~~~~  380 (635)
                      ++++|++.....
T Consensus       710 ~ls~N~l~g~iP  721 (768)
T 3rgz_A          710 DLSNNNLSGPIP  721 (768)
T ss_dssp             ECCSSEEEEECC
T ss_pred             ECcCCcccccCC
Confidence            999999876544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=6.7e-35  Score=329.22  Aligned_cols=378  Identities=17%  Similarity=0.162  Sum_probs=283.8

Q ss_pred             CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCC-CC-CCCC
Q 006695            1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPF-DF-EPEN   78 (635)
Q Consensus         1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~   78 (635)
                      .+||+++|.+..+.+.+|.++++|++|++++|.++.        ..|..+..+++ |++|++++|.+..++. .| .+++
T Consensus        36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~--------~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~  106 (606)
T 3t6q_A           36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW--------IHEDTFQSQHR-LDTLVLTANPLIFMAETALSGPKA  106 (606)
T ss_dssp             CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE--------ECTTTTTTCTT-CCEEECTTCCCSEECTTTTSSCTT
T ss_pred             cEEEccCCccCcCChhHhccCccceEEECCCCccce--------eChhhccCccc-cCeeeCCCCcccccChhhhccccc
Confidence            369999999999999999999999999999998872        23566777765 9999999999988754 56 7999


Q ss_pred             ceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCC-CCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCC--EEee
Q 006695           79 LVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLI-RMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLS--MLCF  154 (635)
Q Consensus        79 L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~-~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~--~L~L  154 (635)
                      |++|++++|+++.+ +..+..+++|++|++++|.+.. ..|.+..+++|++|++++|...+..+..++.+++|+  .|++
T Consensus       107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l  186 (606)
T 3t6q_A          107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL  186 (606)
T ss_dssp             CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred             ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence            99999999999988 5778999999999999999776 446777799999999999987777788899999999  8999


Q ss_pred             cCCCCCCccCCCCCCCCCcEEecCCCC---------------------------------------------------CC
Q 006695          155 EGCKSLRSFPSNLHFMSPIKIDFSSCF---------------------------------------------------NL  183 (635)
Q Consensus       155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~---------------------------------------------------~l  183 (635)
                      ++|......|..+...+|+.|++++|.                                                   .+
T Consensus       187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l  266 (606)
T 3t6q_A          187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF  266 (606)
T ss_dssp             TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred             CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence            998877666666666666666665543                                                   11


Q ss_pred             CccCc----ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh-hh
Q 006695          184 TEFPQ----ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE-IL  258 (635)
Q Consensus       184 ~~~p~----~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~-~l  258 (635)
                      +.++.    .+++|++|++++|.++++|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  346 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL  346 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred             CccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence            22221    12466677777777777776666777777777777766666666666677777777777666654443 36


Q ss_pred             cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCCcCCC-
Q 006695          259 EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLSSLPE-  336 (635)
Q Consensus       259 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~-  336 (635)
                      ..+++|++|++++|.++.++.       .+..+..+++|++|++++|.+..+ |..+..+++|++|++++|++.+..|. 
T Consensus       347 ~~l~~L~~L~l~~n~l~~~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  419 (606)
T 3t6q_A          347 ENLENLRELDLSHDDIETSDC-------CNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQS  419 (606)
T ss_dssp             TTCTTCCEEECCSSCCCEEEE-------STTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred             hccCcCCEEECCCCccccccC-------cchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence            667777777777776665421       011235568888899998887666 45678888899999988887766554 


Q ss_pred             ---CCCccceecccccccccccCccccCccccchhhhhhhhhcccc------cccCCccceEEEcCC
Q 006695          337 ---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSA------FTLNSACVKFVFSNC  394 (635)
Q Consensus       337 ---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~------~~l~~~~~~l~~~nC  394 (635)
                         .+++|+.|++++|......+..+..+++|+.+++++|++....      +......+.+++.+|
T Consensus       420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence               3478889999988877777888888888999999988876521      222223367777776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.3e-36  Score=347.14  Aligned_cols=366  Identities=18%  Similarity=0.182  Sum_probs=183.0

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEE
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKL   82 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L   82 (635)
                      ||+++|.+....+. |+++++|++|++++|.+++        .++..+..+++ |++|++++|.+........+++|++|
T Consensus       205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~--------~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~~l~~L~~L  274 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSG--------DFSRAISTCTE-LKLLNISSNQFVGPIPPLPLKSLQYL  274 (768)
T ss_dssp             EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCS--------CHHHHTTTCSS-CCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred             EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCC--------cccHHHhcCCC-CCEEECCCCcccCccCccccCCCCEE
Confidence            44444444443333 4455555555555544431        12223333332 44444444444322222234444444


Q ss_pred             EcCCCCCc-cccccCCCC-CCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCcc-ccCCCCCCEEeecCCC
Q 006695           83 NLPYSKVV-QIWEGKKRA-FKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSS-VQNFNHLSMLCFEGCK  158 (635)
Q Consensus        83 ~L~~n~l~-~l~~~~~~l-~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~-i~~l~~L~~L~L~~~~  158 (635)
                      ++++|.++ .+|..+... ++|++|+|++|.+...+| .++.+++|++|++++|...+.+|.. ++.+++|++|++++|.
T Consensus       275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~  354 (768)
T 3rgz_A          275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE  354 (768)
T ss_dssp             ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred             ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence            44444444 344444332 444444444444443333 2444444444444444443344433 4444444444444444


Q ss_pred             CCCccCCCC-CCC-CCcEEecCCCCCCCccCcc-----cCCcceEEecccccc-ccCcccccCCCccEEEeecccccccc
Q 006695          159 SLRSFPSNL-HFM-SPIKIDFSSCFNLTEFPQI-----SGNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRL  230 (635)
Q Consensus       159 ~l~~lp~~~-~l~-~L~~L~l~~c~~l~~~p~~-----~~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~l  230 (635)
                      ....+|..+ .++ +|+.|++++|.....+|..     .++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+
T Consensus       355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~  434 (768)
T 3rgz_A          355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTI  434 (768)
T ss_dssp             EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCC
T ss_pred             cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcc
Confidence            333333333 222 4444444443322222211     233555555555554 34444555555555555555555555


Q ss_pred             hhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccch--------------hhccCCC
Q 006695          231 STSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLK--------------DLYIGGS  295 (635)
Q Consensus       231 p~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~--------------~l~~~~~  295 (635)
                      |..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.++ .+|..+..+++|+              ..+..++
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            555555555555555555555555555555555555555555555 3444444333221              2233456


Q ss_pred             CccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCCCC-------------------------------------
Q 006695          296 SLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLPEL-------------------------------------  337 (635)
Q Consensus       296 ~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp~l-------------------------------------  337 (635)
                      +|+.|+|++|++. .+|..+..+++|+.|++++|++.+.+|..                                     
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence            7777777777764 56767777777777777777766555531                                     


Q ss_pred             ------------------------------------CCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695          338 ------------------------------------PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       338 ------------------------------------~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                                                          .++|+.|++++|...+.+|..+..++.|+.|+|++|.+...
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~  671 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS  671 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSC
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCC
Confidence                                                13566777777776667777777777777777777776643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=5.2e-36  Score=339.69  Aligned_cols=389  Identities=12%  Similarity=0.098  Sum_probs=272.6

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCccc-----------------------------------------
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIM-----------------------------------------   40 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~-----------------------------------------   40 (635)
                      .|||+++.+....+.+|++|++|++|+|++|.+...+..                                         
T Consensus        85 ~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~  164 (636)
T 4eco_A           85 GLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD  164 (636)
T ss_dssp             EEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHH
Confidence            589999998877788999999999999999864100000                                         


Q ss_pred             ----------------------------ceeeecCCcccCCCccceEeecCCCCCCC------------------CCCCC
Q 006695           41 ----------------------------ISKVHLDQGLEYLPNELRYLHWHEYPSKA------------------LPFDF   74 (635)
Q Consensus        41 ----------------------------~~~~~l~~~l~~l~~~L~~L~l~~~~l~~------------------lp~~~   74 (635)
                                                  ..--.+|..+..+++ |++|++++|.+..                  +|..+
T Consensus       165 l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTK-LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccC-CCEEECcCCccccccccccccccccchhcccCchhh
Confidence                                        000114555666554 7777777777776                  77664


Q ss_pred             ---CCCCceEEEcCCCCCc-cccccCCCCCCCcEEEccCCC-CCC-CCCC-CCCC------CCCCEEeecCCCCCcccCc
Q 006695           75 ---EPENLVKLNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQ-YLI-RMPD-LSET------PNLERTNLKNCINLTCVPS  141 (635)
Q Consensus        75 ---~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~-~~~-~~p~-l~~l------~~L~~L~L~~n~~l~~~~~  141 (635)
                         .+++|++|++++|++. .+|..+.++++|++|+|++|+ +.. .+|. ++.+      ++|++|++++|... .+|.
T Consensus       244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence               3777777777777654 566777777777777777776 444 4552 4443      77777777777554 6776


Q ss_pred             --cccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCccc---CC-cceEEeccccccccCcccccCC-
Q 006695          142 --SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQIS---GN-ITDLILSETAIQEVPSSIECLT-  214 (635)
Q Consensus       142 --~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~---~~-L~~L~L~~n~i~~lp~~~~~l~-  214 (635)
                        .++.+++|+.|++++|...+.+|....+++|+.|++++|. ++.+|..+   ++ |++|++++|.++.+|..+..++ 
T Consensus       323 ~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l  401 (636)
T 4eco_A          323 ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV  401 (636)
T ss_dssp             HHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCS
T ss_pred             hhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcCcccchhhhhccc
Confidence              6777777777777776655466622266677777777753 33555433   45 7777777777777777666544 


Q ss_pred             -CccEEEeecccccccchhccc-------CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhccccc
Q 006695          215 -NLEKLYINRCMRLKRLSTSIC-------KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEG  286 (635)
Q Consensus       215 -~L~~L~L~~n~~~~~lp~~~~-------~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~  286 (635)
                       +|+.|++++|.+.+..|..+.       .+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+...  
T Consensus       402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~--  479 (636)
T 4eco_A          402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKD--  479 (636)
T ss_dssp             SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEE--
T ss_pred             CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcc--
Confidence             777777777777777777666       6677778888777776444445566777888888888777777543211  


Q ss_pred             chhhccCCCCccEEEcCCCCCCccccccc--CCCCccEEeccCCCCCCcCCCC---CCccceeccc------cccccccc
Q 006695          287 LKDLYIGGSSLRQLNLSRNDSESLPASIT--QLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAE------NCKQLQFI  355 (635)
Q Consensus       287 L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~--~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~------~c~~l~~~  355 (635)
                      +......+++|+.|+|++|+++.+|..+.  .+++|++|+|++|++.+ +|..   .++|+.|+++      +|...+.+
T Consensus       480 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~  558 (636)
T 4eco_A          480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW  558 (636)
T ss_dssp             TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred             ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccC
Confidence            00011223489999999999999998886  99999999999988877 7763   5789999994      56667888


Q ss_pred             CccccCccccchhhhhhhhhcccccccCCccceEEEcCCcc
Q 006695          356 PEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLK  396 (635)
Q Consensus       356 ~~~~~~L~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~  396 (635)
                      |..+..+++|+.|+|++|.+......+....+.+++.+|+-
T Consensus       559 p~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          559 PEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDIKDNPN  599 (636)
T ss_dssp             CTTGGGCSSCCEEECCSSCCCBCCSCCCTTCCEEECCSCTT
T ss_pred             hHHHhcCCCCCEEECCCCcCCccCHhHhCcCCEEECcCCCC
Confidence            99999999999999999999655444445557888888743

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-34  Score=324.82  Aligned_cols=372  Identities=17%  Similarity=0.150  Sum_probs=245.4

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCC-CCCC-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKAL-PFDF-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~L   79 (635)
                      .||+++|.+..+.+.+|.++++|++|++++|.++++        .+..+..+++ |++|++++|.+..+ |..| .+++|
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i--------~~~~~~~l~~-L~~L~Ls~n~l~~~~p~~~~~l~~L  106 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI--------EDKAWHGLHH-LSNLILTGNPIQSFSPGSFSGLTSL  106 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTTTTTCTT-CCEEECTTCCCCCCCTTSSTTCTTC
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCccccc--------CHHHhhchhh-cCEeECCCCcccccChhhcCCcccC
Confidence            578888888888777888888888888888777621        1344555544 77777777777666 4445 67777


Q ss_pred             eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccCccc-------------
Q 006695           80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVPSSV-------------  143 (635)
Q Consensus        80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i-------------  143 (635)
                      ++|++++|.++.++ ..+..+++|++|++++|.+.. .+| .++++++|++|++++|...+..+..+             
T Consensus       107 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L  186 (606)
T 3vq2_A          107 ENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSL  186 (606)
T ss_dssp             CEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEE
T ss_pred             CEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccccee
Confidence            77777777776665 456677777777777776553 344 36667777777776664433222211             


Q ss_pred             --------------------------------------------------------------------------------
Q 006695          144 --------------------------------------------------------------------------------  143 (635)
Q Consensus       144 --------------------------------------------------------------------------------  143 (635)
                                                                                                      
T Consensus       187 ~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l  266 (606)
T 3vq2_A          187 DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF  266 (606)
T ss_dssp             ECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred             eccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence                                                                                            


Q ss_pred             -------------------------------------cCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCcc
Q 006695          144 -------------------------------------QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEF  186 (635)
Q Consensus       144 -------------------------------------~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~  186 (635)
                                                           ..+++|+.|++++|.. +.+|.. .+++|+.|++++|..+..+
T Consensus       267 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          267 RLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             EECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEEESCSSCEEC
T ss_pred             eccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccccC-CCCccceeeccCCcCccch
Confidence                                                 2222333333333332 333322 4444444444444333332


Q ss_pred             C-cccCCcceEEecccccccc---CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch-hhhcCC
Q 006695          187 P-QISGNITDLILSETAIQEV---PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP-EILEKM  261 (635)
Q Consensus       187 p-~~~~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l  261 (635)
                      + ..+++|++|++++|.++.+   |..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|.+.+..+ ..+..+
T Consensus       345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l  423 (606)
T 3vq2_A          345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL  423 (606)
T ss_dssp             CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred             hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence            2 1235677777777777665   5567777777777777776543 55667777777777777777766666 567777


Q ss_pred             CCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCCc--ccccccCCCCccEEeccCCCCCCcCCCC-
Q 006695          262 ESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSES--LPASITQLSQLRSLHLKDCSMLSSLPEL-  337 (635)
Q Consensus       262 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~--lp~~l~~l~~L~~L~L~~n~~l~~lp~l-  337 (635)
                      ++|+.|++++|.++.. |..          +..+++|++|++++|.+..  +|..++.+++|++|+|++|++.+..|.. 
T Consensus       424 ~~L~~L~l~~n~l~~~~~~~----------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  493 (606)
T 3vq2_A          424 EKLLYLDISYTNTKIDFDGI----------FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF  493 (606)
T ss_dssp             TTCCEEECTTSCCEECCTTT----------TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             ccCCEEECcCCCCCccchhh----------hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhh
Confidence            7777777777777753 333          3456889999999998865  6777889999999999998887777653 


Q ss_pred             --CCccceecccccccccccCccccCccccchhhhhhhhhcccccc---cCCccceEEEcCCc
Q 006695          338 --PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT---LNSACVKFVFSNCL  395 (635)
Q Consensus       338 --~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~---l~~~~~~l~~~nC~  395 (635)
                        +++|+.|++++|......|..+..+++|+.+++++|++......   ++...+.+++.+++
T Consensus       494 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          494 DTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             TTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             cccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence              47899999999988777788888899999999999988755332   22223566666653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.1e-34  Score=323.39  Aligned_cols=370  Identities=18%  Similarity=0.170  Sum_probs=260.4

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L   79 (635)
                      +||+++|++..+.+.+|.++++|++|++++|.++++        .+..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~--------~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L  100 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI--------EGDAFYSLGS-LEHLDLSDNHLSSLSSSWFGPLSSL  100 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEE--------CTTTTTTCTT-CCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCcc--------Chhhcccccc-CCEEECCCCccCccCHHHhccCCCC
Confidence            689999999999999999999999999999988722        2456666665 99999999999998876 5 78999


Q ss_pred             eEEEcCCCCCccc--cccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCC--------
Q 006695           80 VKLNLPYSKVVQI--WEGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFN--------  147 (635)
Q Consensus        80 ~~L~L~~n~l~~l--~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~--------  147 (635)
                      ++|++++|.++.+  +..+..+++|++|++++|.....+|  .++++++|++|++++|...+..|..++.++        
T Consensus       101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~  180 (549)
T 2z81_A          101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH  180 (549)
T ss_dssp             CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred             cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence            9999999999854  6778999999999999998666665  588999999999999987777777776554        


Q ss_pred             ----------------CCCEEeecCCCCCCcc--CCC--CCCCCCcEEec----------------------------CC
Q 006695          148 ----------------HLSMLCFEGCKSLRSF--PSN--LHFMSPIKIDF----------------------------SS  179 (635)
Q Consensus       148 ----------------~L~~L~L~~~~~l~~l--p~~--~~l~~L~~L~l----------------------------~~  179 (635)
                                      +|+.|++++|+..+..  +..  ..+++|+.|++                            ++
T Consensus       181 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~  260 (549)
T 2z81_A          181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD  260 (549)
T ss_dssp             CSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred             cCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence                            4555555544332210  000  02233333333                            22


Q ss_pred             CCCCC--cc------------------------C------------cccCCcceEEeccccccccCccc-ccCCCccEEE
Q 006695          180 CFNLT--EF------------------------P------------QISGNITDLILSETAIQEVPSSI-ECLTNLEKLY  220 (635)
Q Consensus       180 c~~l~--~~------------------------p------------~~~~~L~~L~L~~n~i~~lp~~~-~~l~~L~~L~  220 (635)
                      |....  .+                        +            ...++|++|++++|.++.+|..+ ..+++|++|+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~  340 (549)
T 2z81_A          261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD  340 (549)
T ss_dssp             CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred             ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence            21000  00                        0            11246888888888888888876 5799999999


Q ss_pred             eecccccccchh---cccCCCCCcEEecCCCCCCCcch--hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695          221 INRCMRLKRLST---SICKLKSLHVLVLDDCSKLERFP--EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS  295 (635)
Q Consensus       221 L~~n~~~~~lp~---~~~~l~~L~~L~Ls~n~~~~~~~--~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~  295 (635)
                      +++|.+.+..|.   .++.+++|++|++++|.+.+..+  ..+..+++|++|++++|+++.+|..+..          ++
T Consensus       341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~----------~~  410 (549)
T 2z81_A          341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW----------PE  410 (549)
T ss_dssp             CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC----------CT
T ss_pred             ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcc----------cc
Confidence            999998887653   37789999999999998766432  5688999999999999999998876543          46


Q ss_pred             CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695          296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF  375 (635)
Q Consensus       296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~  375 (635)
                      +|++|++++|+++.+|..+.  ++|++|++++|++.+ ++..+++|++|++++|.. +.+|. ...+++|+.++|++|++
T Consensus       411 ~L~~L~Ls~N~l~~l~~~~~--~~L~~L~Ls~N~l~~-~~~~l~~L~~L~Ls~N~l-~~ip~-~~~l~~L~~L~Ls~N~l  485 (549)
T 2z81_A          411 KMRFLNLSSTGIRVVKTCIP--QTLEVLDVSNNNLDS-FSLFLPRLQELYISRNKL-KTLPD-ASLFPVLLVMKISRNQL  485 (549)
T ss_dssp             TCCEEECTTSCCSCCCTTSC--TTCSEEECCSSCCSC-CCCCCTTCCEEECCSSCC-SSCCC-GGGCTTCCEEECCSSCC
T ss_pred             cccEEECCCCCcccccchhc--CCceEEECCCCChhh-hcccCChhcEEECCCCcc-CcCCC-cccCccCCEEecCCCcc
Confidence            67777777777766665432  466777777665544 334456677777777643 34554 34566677777777766


Q ss_pred             cccccc---cCCccceEEEcCCc
Q 006695          376 LNSAFT---LNSACVKFVFSNCL  395 (635)
Q Consensus       376 ~~~~~~---l~~~~~~l~~~nC~  395 (635)
                      ......   .....+.+++.+++
T Consensus       486 ~~~~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          486 KSVPDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCCCTTGGGGCTTCCEEECCSSC
T ss_pred             CCcCHHHHhcCcccCEEEecCCC
Confidence            554221   11222556666654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.1e-34  Score=326.54  Aligned_cols=354  Identities=15%  Similarity=0.124  Sum_probs=291.2

Q ss_pred             CcccccChhhhcCCCCCcEEEeecCCCCCC-------cccceee--ecCCccc--CCCccceEeecCCCCC-CCCCCCC-
Q 006695            8 ITSIHLSPQAFANMPNLRFLKFYMPEHNGV-------PIMISKV--HLDQGLE--YLPNELRYLHWHEYPS-KALPFDF-   74 (635)
Q Consensus         8 n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~-------~~~~~~~--~l~~~l~--~l~~~L~~L~l~~~~l-~~lp~~~-   74 (635)
                      |++..+ |.+|+++++|++|++++|.+++.       +......  .+|..+.  .+++ |++|++++|.+ ..+|..+ 
T Consensus       193 n~l~~i-p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~-L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          193 NNITFV-SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD-LTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             CEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT-CCEEEEECCTTCSSCCTTTT
T ss_pred             CCCccC-CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC-CCEEEecCCcCCccChHHHh
Confidence            355554 56799999999999999998831       0000000  1778877  7766 99999999985 6788877 


Q ss_pred             CCCCceEEEcCCCC-Ccc--ccccCCCC------CCCcEEEccCCCCCCCCCC---CCCCCCCCEEeecCCCCCcccCcc
Q 006695           75 EPENLVKLNLPYSK-VVQ--IWEGKKRA------FKLKYVDIHNSQYLIRMPD---LSETPNLERTNLKNCINLTCVPSS  142 (635)
Q Consensus        75 ~l~~L~~L~L~~n~-l~~--l~~~~~~l------~~L~~L~Ls~n~~~~~~p~---l~~l~~L~~L~L~~n~~l~~~~~~  142 (635)
                      .+++|++|++++|+ ++.  +|..+..+      ++|++|+|++|++. .+|.   ++.+++|+.|++++|...+.+| .
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence            79999999999998 884  88887776      99999999999977 6775   9999999999999998877999 9


Q ss_pred             ccCCCCCCEEeecCCCCCCccCCCC-CCCC-CcEEecCCCCCCCccCccc-----CCcceEEeccccccc-cCcccc---
Q 006695          143 VQNFNHLSMLCFEGCKSLRSFPSNL-HFMS-PIKIDFSSCFNLTEFPQIS-----GNITDLILSETAIQE-VPSSIE---  211 (635)
Q Consensus       143 i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~-L~~L~l~~c~~l~~~p~~~-----~~L~~L~L~~n~i~~-lp~~~~---  211 (635)
                      ++.+++|+.|++++|... .+|..+ .+++ |+.|++++|. ++.+|..+     .+|++|++++|.++. +|..+.   
T Consensus       349 ~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~  426 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD  426 (636)
T ss_dssp             CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC
T ss_pred             hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccc
Confidence            999999999999998644 888777 7888 9999999976 55777654     379999999999986 466677   


Q ss_pred             ----cCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh-hhcCC-------CCCCEEEecCCCccccCc
Q 006695          212 ----CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE-ILEKM-------ESVKCISLERTAITELPS  279 (635)
Q Consensus       212 ----~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~-~l~~l-------~~L~~L~L~~n~l~~lp~  279 (635)
                          .+++|++|++++|.+.+..+..+..+++|++|+|++|.+. .+|. .+...       ++|+.|++++|.++.+|.
T Consensus       427 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~  505 (636)
T 4eco_A          427 PTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD  505 (636)
T ss_dssp             SSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCG
T ss_pred             cccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccCh
Confidence                7889999999999988544445667999999999999888 4554 33333       399999999999999987


Q ss_pred             hhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEecc------CCCCCCcCCCC---CCccceecccccc
Q 006695          280 SFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLK------DCSMLSSLPEL---PQSLELLDAENCK  350 (635)
Q Consensus       280 ~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~------~n~~l~~lp~l---~~sL~~L~l~~c~  350 (635)
                      .+..        ..+++|+.|+|++|+++.+|..+..+++|++|+|+      +|++.+.+|..   +++|+.|++++|.
T Consensus       506 ~~~~--------~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~  577 (636)
T 4eco_A          506 DFRA--------TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND  577 (636)
T ss_dssp             GGST--------TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred             hhhh--------ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc
Confidence            6520        25689999999999999999999999999999994      56778888864   5799999999998


Q ss_pred             cccccCccccCccccchhhhhhhhhcccc
Q 006695          351 QLQFIPEILSGLEEVDASVLEKATFLNSA  379 (635)
Q Consensus       351 ~l~~~~~~~~~L~~L~~l~L~~n~~~~~~  379 (635)
                      . +.+|..+.  ++|+.+++++|++.+..
T Consensus       578 l-~~ip~~~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          578 I-RKVNEKIT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             C-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred             C-CccCHhHh--CcCCEEECcCCCCcccc
Confidence            7 78887755  79999999999988764

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.3e-34  Score=320.69  Aligned_cols=352  Identities=17%  Similarity=0.147  Sum_probs=281.2

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L   79 (635)
                      +||+++|.+..+.+.+|.++++|++|++++|.++++        .|..+..+++ |++|++++|.+..+|.. + .+++|
T Consensus        60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~--------~p~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L  130 (606)
T 3vq2_A           60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF--------SPGSFSGLTS-LENLVAVETKLASLESFPIGQLITL  130 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC--------CTTSSTTCTT-CCEEECTTSCCCCSSSSCCTTCTTC
T ss_pred             EEeCCCCcccccCHHHhhchhhcCEeECCCCccccc--------ChhhcCCccc-CCEEEccCCccccccccccCCCCCC
Confidence            689999999999899999999999999999988733        2455555554 77777777777666633 4 56677


Q ss_pred             eEEEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCC------------------------------------------
Q 006695           80 VKLNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIR------------------------------------------  115 (635)
Q Consensus        80 ~~L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~------------------------------------------  115 (635)
                      ++|++++|.++  .+|..+.++++|++|++++|.+...                                          
T Consensus       131 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~  210 (606)
T 3vq2_A          131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT  210 (606)
T ss_dssp             CEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             CEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeee
Confidence            77777777666  3566666666666666666654321                                          


Q ss_pred             --------------------------------------------------------------------------------
Q 006695          116 --------------------------------------------------------------------------------  115 (635)
Q Consensus       116 --------------------------------------------------------------------------------  115 (635)
                                                                                                      
T Consensus       211 L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L  290 (606)
T 3vq2_A          211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM  290 (606)
T ss_dssp             EESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEE
T ss_pred             ccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEE
Confidence                                                                                            


Q ss_pred             ---------CCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCcc
Q 006695          116 ---------MPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEF  186 (635)
Q Consensus       116 ---------~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~  186 (635)
                               +|.+..+++|++|++++|.. +.+| .+ .+++|+.|++++|+....+ ....+++|+.|++++|.. +..
T Consensus       291 ~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l-~~~  365 (606)
T 3vq2_A          291 SLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNAL-SFS  365 (606)
T ss_dssp             EEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCE-EEE
T ss_pred             EecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCcc-CCC
Confidence                     11234445777778887755 7777 55 9999999999999777666 334899999999999743 332


Q ss_pred             ---C---cccCCcceEEeccccccccCcccccCCCccEEEeecccccccch-hcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695          187 ---P---QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLS-TSICKLKSLHVLVLDDCSKLERFPEILE  259 (635)
Q Consensus       187 ---p---~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~  259 (635)
                         +   ...++|++|++++|.++.+|..+..+++|+.|++++|.+.+..| ..+..+++|++|++++|.+.+..|..+.
T Consensus       366 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  445 (606)
T 3vq2_A          366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL  445 (606)
T ss_dssp             EECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             cchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence               3   23478999999999999999999999999999999999988877 6889999999999999999999999999


Q ss_pred             CCCCCCEEEecCCCccc--cCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCCcCCC
Q 006695          260 KMESVKCISLERTAITE--LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLSSLPE  336 (635)
Q Consensus       260 ~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~~lp~  336 (635)
                      .+++|+.|++++|.++.  +|..+          ..+++|+.|+|++|.++.++ ..+..+++|++|+|++|++.+..|.
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~----------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~  515 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVF----------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS  515 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCC----------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG
T ss_pred             CCCCCCEEECCCCcCCCcchHHhh----------ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH
Confidence            99999999999999986  56554          55689999999999998774 5689999999999999999887776


Q ss_pred             C---CCccceecccccccccccCccccCcc-ccchhhhhhhhhccc
Q 006695          337 L---PQSLELLDAENCKQLQFIPEILSGLE-EVDASVLEKATFLNS  378 (635)
Q Consensus       337 l---~~sL~~L~l~~c~~l~~~~~~~~~L~-~L~~l~L~~n~~~~~  378 (635)
                      .   +++|+.|++++|. ++.+|..+..++ +|+.+++++|++.+.
T Consensus       516 ~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~  560 (606)
T 3vq2_A          516 HYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACI  560 (606)
T ss_dssp             GTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred             HccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccC
Confidence            3   4789999999997 557887788887 599999999988654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=7.3e-34  Score=328.69  Aligned_cols=389  Identities=13%  Similarity=0.105  Sum_probs=305.1

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEe-ecCCCCCC-ccc---------------------------------------
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKF-YMPEHNGV-PIM---------------------------------------   40 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L-~~n~l~~~-~~~---------------------------------------   40 (635)
                      .|||+++.+....|.+|+++++|++|+| ++|.+.+. +..                                       
T Consensus       327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            5899999998777899999999999999 77754321 000                                       


Q ss_pred             ----------------------------ceeeecCCcccCCCccceEeecCCCCCCC------------------CCCCC
Q 006695           41 ----------------------------ISKVHLDQGLEYLPNELRYLHWHEYPSKA------------------LPFDF   74 (635)
Q Consensus        41 ----------------------------~~~~~l~~~l~~l~~~L~~L~l~~~~l~~------------------lp~~~   74 (635)
                                                  ..--.+|..+..+++ |++|++++|.+..                  +|..+
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~-L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l  485 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTK-LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEEL  485 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTT-CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccchhHHHhcCCC-CCEEECcCCcCCCCcccccccccccccccccCChhh
Confidence                                        000016777777766 9999999999988                  89886


Q ss_pred             ---CCCCceEEEcCCCCCc-cccccCCCCCCCcEEEccCCC-CCC-CCC--------CCCCCCCCCEEeecCCCCCcccC
Q 006695           75 ---EPENLVKLNLPYSKVV-QIWEGKKRAFKLKYVDIHNSQ-YLI-RMP--------DLSETPNLERTNLKNCINLTCVP  140 (635)
Q Consensus        75 ---~l~~L~~L~L~~n~l~-~l~~~~~~l~~L~~L~Ls~n~-~~~-~~p--------~l~~l~~L~~L~L~~n~~l~~~~  140 (635)
                         .+++|++|+|++|++. .+|..+.++++|+.|+|++|+ +.. .+|        .+..+++|+.|+|++|... .+|
T Consensus       486 ~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip  564 (876)
T 4ecn_A          486 SWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFP  564 (876)
T ss_dssp             CGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCC
T ss_pred             hhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccC
Confidence               5899999999999855 788889999999999999998 554 455        2445669999999998666 888


Q ss_pred             c--cccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCccc---CC-cceEEeccccccccCcccccCC
Q 006695          141 S--SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQIS---GN-ITDLILSETAIQEVPSSIECLT  214 (635)
Q Consensus       141 ~--~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~---~~-L~~L~L~~n~i~~lp~~~~~l~  214 (635)
                      .  .++.+++|+.|++++|... .+|....+++|+.|++++|. +..+|..+   ++ |+.|+|++|.++.+|..+..++
T Consensus       565 ~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~  642 (876)
T 4ecn_A          565 ASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKS  642 (876)
T ss_dssp             CHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTC
T ss_pred             ChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCCCcCchhhhccc
Confidence            8  8999999999999988755 88844488899999999875 44777543   56 9999999999999998887765


Q ss_pred             C--ccEEEeecccccccchhc---cc--CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc
Q 006695          215 N--LEKLYINRCMRLKRLSTS---IC--KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL  287 (635)
Q Consensus       215 ~--L~~L~L~~n~~~~~lp~~---~~--~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L  287 (635)
                      .  |+.|++++|.+.+.+|..   +.  .+++|+.|+|++|.+....+..+..+++|+.|+|++|.|+.+|..+....  
T Consensus       643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~--  720 (876)
T 4ecn_A          643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPK--  720 (876)
T ss_dssp             SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCT--
T ss_pred             cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccc--
Confidence            4  999999999988765532   22  34589999999998885444455689999999999999999887653211  


Q ss_pred             hhhccCCCCccEEEcCCCCCCccccccc--CCCCccEEeccCCCCCCcCCC---CCCccceecccc------cccccccC
Q 006695          288 KDLYIGGSSLRQLNLSRNDSESLPASIT--QLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAEN------CKQLQFIP  356 (635)
Q Consensus       288 ~~l~~~~~~L~~L~Ls~n~~~~lp~~l~--~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~------c~~l~~~~  356 (635)
                      ......+++|+.|+|++|+++.+|..+.  .+++|+.|+|++|++.+ +|.   .+++|+.|++++      |...+.+|
T Consensus       721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip  799 (876)
T 4ecn_A          721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP  799 (876)
T ss_dssp             TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCC
T ss_pred             cccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccCh
Confidence            0011234589999999999999998887  99999999999988876 675   357899999976      66678889


Q ss_pred             ccccCccccchhhhhhhhhcccccccCCccceEEEcCCccc
Q 006695          357 EILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKL  397 (635)
Q Consensus       357 ~~~~~L~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L  397 (635)
                      ..+..+++|+.|+|++|.+......+.+.++.+++.+|+-.
T Consensus       800 ~~l~~L~~L~~L~Ls~N~L~~Ip~~l~~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          800 TGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNI  840 (876)
T ss_dssp             TTGGGCSSCCEEECCSSCCCBCCSCCCSSSCEEECCSCTTC
T ss_pred             HHHhcCCCCCEEECCCCCCCccCHhhcCCCCEEECCCCCCC
Confidence            99999999999999999996555445555688899888643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.1e-33  Score=319.11  Aligned_cols=391  Identities=19%  Similarity=0.166  Sum_probs=211.4

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcc-ccee------e--------ec-CCcccCCCccceEeecCCC
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPI-MISK------V--------HL-DQGLEYLPNELRYLHWHEY   65 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~-~~~~------~--------~l-~~~l~~l~~~L~~L~l~~~   65 (635)
                      +||+++|++..+.+.+|+++++|++|++++|.+++++. ....      +        .+ +..+..+++ |++|++++|
T Consensus        61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~-L~~L~L~~n  139 (606)
T 3t6q_A           61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT-LESLYLGSN  139 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTT-CCEEECCSS
T ss_pred             EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCc-ccEEECCCC
Confidence            57888888888888888888888888888887763211 0000      0        00 122333332 666666666


Q ss_pred             CCCCC--CCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCc--EEEccCCCCCCCCCCCCCCC-----------------
Q 006695           66 PSKAL--PFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLK--YVDIHNSQYLIRMPDLSETP-----------------  123 (635)
Q Consensus        66 ~l~~l--p~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~--~L~Ls~n~~~~~~p~l~~l~-----------------  123 (635)
                      .+..+  |..+.+++|++|++++|.++.++ ..+..+++|+  .|++++|.+....|......                 
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~  219 (606)
T 3t6q_A          140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF  219 (606)
T ss_dssp             CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHH
T ss_pred             cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHh
Confidence            66554  33345666666666666665542 3344445554  45555544333222111111                 


Q ss_pred             -----------------------------------CCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-
Q 006695          124 -----------------------------------NLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-  167 (635)
Q Consensus       124 -----------------------------------~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-  167 (635)
                                                         +|+.|++++|......+..++.+++|+.|++++|. ++.+|..+ 
T Consensus       220 ~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~  298 (606)
T 3t6q_A          220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLV  298 (606)
T ss_dssp             HHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCC
T ss_pred             hhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCChhhc
Confidence                                               22233333332222222234455555555555543 33444433 


Q ss_pred             CCCCCcEEecCCCCCCCccCc---ccCCcceEEecccccc-ccCcc-cccCCCccEEEeecccccccc--hhcccCCCCC
Q 006695          168 HFMSPIKIDFSSCFNLTEFPQ---ISGNITDLILSETAIQ-EVPSS-IECLTNLEKLYINRCMRLKRL--STSICKLKSL  240 (635)
Q Consensus       168 ~l~~L~~L~l~~c~~l~~~p~---~~~~L~~L~L~~n~i~-~lp~~-~~~l~~L~~L~L~~n~~~~~l--p~~~~~l~~L  240 (635)
                      .+++|+.|++++|......|.   .+++|++|++++|.+. .+|.. ++.+++|++|++++|.+.+..  +..+..+++|
T Consensus       299 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L  378 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL  378 (606)
T ss_dssp             SCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTC
T ss_pred             ccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCC
Confidence            445555555555432222121   1234444444444443 33322 444444444444444443333  3344444444


Q ss_pred             cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccC--chhcccccch--------------hhccCCCCccEEEcCC
Q 006695          241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP--SSFANLEGLK--------------DLYIGGSSLRQLNLSR  304 (635)
Q Consensus       241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~--------------~l~~~~~~L~~L~Ls~  304 (635)
                      ++|++++|.+.+..|..+..+++|+.|++++|.++..+  ..+..+++|+              ..+..+++|++|++++
T Consensus       379 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  458 (606)
T 3t6q_A          379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQG  458 (606)
T ss_dssp             CEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTT
T ss_pred             CEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCC
Confidence            44444444444444444444444444444444444221  1122222211              2235568899999999


Q ss_pred             CCCCc--cc--ccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCccccchhhhhhhhhcc
Q 006695          305 NDSES--LP--ASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLN  377 (635)
Q Consensus       305 n~~~~--lp--~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~  377 (635)
                      |.+..  +|  ..+..+++|++|++++|++.+..|..   +++|+.|++++|......|..+..++.| .+++++|.+..
T Consensus       459 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~  537 (606)
T 3t6q_A          459 NHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI  537 (606)
T ss_dssp             CBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC
T ss_pred             CCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc
Confidence            98765  22  45788999999999998887776653   4789999999998888888889999999 89999998876


Q ss_pred             ccccc---CCccceEEEcCCc
Q 006695          378 SAFTL---NSACVKFVFSNCL  395 (635)
Q Consensus       378 ~~~~l---~~~~~~l~~~nC~  395 (635)
                      .....   ....+.+++.+++
T Consensus       538 ~~~~~~~~l~~L~~L~l~~N~  558 (606)
T 3t6q_A          538 ILPSLLPILSQQRTINLRQNP  558 (606)
T ss_dssp             CCGGGHHHHHTSSEEECTTCC
T ss_pred             cCHhhcccCCCCCEEeCCCCC
Confidence            53321   1223677777765

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.1e-34  Score=331.82  Aligned_cols=359  Identities=16%  Similarity=0.184  Sum_probs=292.4

Q ss_pred             eeecCCCcccc-----------------cChhhhc--CCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeec
Q 006695            2 FLDLSKITSIH-----------------LSPQAFA--NMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHW   62 (635)
Q Consensus         2 ~LdLs~n~~~~-----------------l~~~~f~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l   62 (635)
                      +|||++|.+..                 ..|..++  +|++|++|+|++|.+.        ..+|..+..+++ |++|++
T Consensus       452 ~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~--------~~iP~~l~~L~~-L~~L~L  522 (876)
T 4ecn_A          452 IIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM--------TQLPDFLYDLPE-LQSLNI  522 (876)
T ss_dssp             EEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC--------CSCCGGGGGCSS-CCEEEC
T ss_pred             EEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC--------ccChHHHhCCCC-CCEEEC
Confidence            68999999887                 1355555  9999999999999876        256778888876 999999


Q ss_pred             CCCC-CCC--CCCCC--------CCCCceEEEcCCCCCccccc--cCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEe
Q 006695           63 HEYP-SKA--LPFDF--------EPENLVKLNLPYSKVVQIWE--GKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTN  129 (635)
Q Consensus        63 ~~~~-l~~--lp~~~--------~l~~L~~L~L~~n~l~~l~~--~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~  129 (635)
                      ++|. +..  +|..+        .+++|++|+|++|+++.+|.  .+..+++|+.|+|++|.+. .+|.++.+++|+.|+
T Consensus       523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~  601 (876)
T 4ecn_A          523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLK  601 (876)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEE
T ss_pred             cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEE
Confidence            9998 764  77543        45699999999999999998  8999999999999999977 788999999999999


Q ss_pred             ecCCCCCcccCccccCCCC-CCEEeecCCCCCCccCCCCC---CCCCcEEecCCCCCCCccCccc--------CCcceEE
Q 006695          130 LKNCINLTCVPSSVQNFNH-LSMLCFEGCKSLRSFPSNLH---FMSPIKIDFSSCFNLTEFPQIS--------GNITDLI  197 (635)
Q Consensus       130 L~~n~~l~~~~~~i~~l~~-L~~L~L~~~~~l~~lp~~~~---l~~L~~L~l~~c~~l~~~p~~~--------~~L~~L~  197 (635)
                      |++|... .+|..+..+++ |+.|++++|.. ..+|..+.   .++|+.|++++|.....+|...        .+|+.|+
T Consensus       602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             CCSSCCS-CCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             CcCCccc-cchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            9999766 89999999999 99999999874 48887663   3459999999987655444322        4799999


Q ss_pred             eccccccccCccc-ccCCCccEEEeecccccccchhcccC--------CCCCcEEecCCCCCCCcchhhhc--CCCCCCE
Q 006695          198 LSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICK--------LKSLHVLVLDDCSKLERFPEILE--KMESVKC  266 (635)
Q Consensus       198 L~~n~i~~lp~~~-~~l~~L~~L~L~~n~~~~~lp~~~~~--------l~~L~~L~Ls~n~~~~~~~~~l~--~l~~L~~  266 (635)
                      |++|.++.+|..+ ..+++|+.|+|++|.+. .+|..+..        +++|+.|+|++|.+. .+|..+.  .+++|+.
T Consensus       680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~  757 (876)
T 4ecn_A          680 LSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN  757 (876)
T ss_dssp             CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred             ccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence            9999999999875 48999999999999887 56654433        239999999999877 6888887  9999999


Q ss_pred             EEecCCCccccCchhcccccchhhccCCCCccEEEcCC------CC-CCcccccccCCCCccEEeccCCCCCCcCCC-CC
Q 006695          267 ISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSR------ND-SESLPASITQLSQLRSLHLKDCSMLSSLPE-LP  338 (635)
Q Consensus       267 L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~------n~-~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~-l~  338 (635)
                      |+|++|.++.+|..+.          .+++|+.|+|++      |+ .+.+|..+.++++|+.|+|++|++ +.+|. ..
T Consensus       758 L~Ls~N~L~~lp~~l~----------~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~  826 (876)
T 4ecn_A          758 MDVSYNCFSSFPTQPL----------NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT  826 (876)
T ss_dssp             EECCSSCCSSCCCGGG----------GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred             EEeCCCCCCccchhhh----------cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence            9999999999987764          458899999987      44 467898999999999999999988 88887 56


Q ss_pred             CccceecccccccccccCccccCccccchhhhhhhhhcccccccCCccceEEEcCCcccc
Q 006695          339 QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKLN  398 (635)
Q Consensus       339 ~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L~  398 (635)
                      ++|+.|++++|+....-+..+.....+..+.|.+|+             ...+.+|+.|+
T Consensus       827 ~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~-------------~~~I~gC~~L~  873 (876)
T 4ecn_A          827 PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK-------------TQDIRGCDALG  873 (876)
T ss_dssp             SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT-------------TSEEESCGGGC
T ss_pred             CCCCEEECCCCCCCccChHHccccccchheeecCCC-------------ccccCCCCCcc
Confidence            899999999999776655555444344444443332             23567888774

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=318.43  Aligned_cols=372  Identities=14%  Similarity=0.128  Sum_probs=233.7

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      +||+++|.+..+.+.+|.++++|++|++++|.+++        ..|..+..+++ |++|++++|.++.+|.. .+++|++
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--------~~~~~~~~l~~-L~~L~Ls~N~l~~lp~~-~l~~L~~   94 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQY--------LDISVFKFNQE-LEYLDLSHNKLVKISCH-PTVNLKH   94 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE--------EEGGGGTTCTT-CCEEECCSSCCCEEECC-CCCCCSE
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCC--------cChHHhhcccC-CCEEecCCCceeecCcc-ccCCccE
Confidence            35555555555555555555555555555555541        11334444433 55555555555555555 5555555


Q ss_pred             EEcCCCCCcc--ccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCC--CEEeecCCCC--CcccCccccCCC-CCCEEee
Q 006695           82 LNLPYSKVVQ--IWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNL--ERTNLKNCIN--LTCVPSSVQNFN-HLSMLCF  154 (635)
Q Consensus        82 L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L--~~L~L~~n~~--l~~~~~~i~~l~-~L~~L~L  154 (635)
                      |++++|.++.  +|..++.+++|++|++++|.+..  .++..+++|  +.|++++|..  .+..|..+..+. +...+++
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l  172 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVF  172 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEEC
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEe
Confidence            5555555553  33455555555555555555432  223444444  5555555544  333343333322 1112222


Q ss_pred             cCCCCCCccCCCC--CCCCCcEEecCCCC-------------------CCCcc---------------Cc--ccCCcceE
Q 006695          155 EGCKSLRSFPSNL--HFMSPIKIDFSSCF-------------------NLTEF---------------PQ--ISGNITDL  196 (635)
Q Consensus       155 ~~~~~l~~lp~~~--~l~~L~~L~l~~c~-------------------~l~~~---------------p~--~~~~L~~L  196 (635)
                      ++|.....++...  .+++|+.+++++|.                   .++.+               +.  ...+|++|
T Consensus       173 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L  252 (520)
T 2z7x_B          173 PTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF  252 (520)
T ss_dssp             CSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred             ccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence            2222222222211  34555555555442                   00000               00  01378888


Q ss_pred             Eecccccc-ccCccc-----ccCCCccEEEeecccccccch-hc-------------------------ccCCCCCcEEe
Q 006695          197 ILSETAIQ-EVPSSI-----ECLTNLEKLYINRCMRLKRLS-TS-------------------------ICKLKSLHVLV  244 (635)
Q Consensus       197 ~L~~n~i~-~lp~~~-----~~l~~L~~L~L~~n~~~~~lp-~~-------------------------~~~l~~L~~L~  244 (635)
                      ++++|.++ .+|..+     +.+++|+.+++++|.+  .+| ..                         +..+++|++|+
T Consensus       253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~  330 (520)
T 2z7x_B          253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLD  330 (520)
T ss_dssp             EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEE
T ss_pred             EeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEE
Confidence            88888887 677776     7777777777777665  233 11                         15788999999


Q ss_pred             cCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-cccc-ccCCCCccE
Q 006695          245 LDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-LPAS-ITQLSQLRS  322 (635)
Q Consensus       245 Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-lp~~-l~~l~~L~~  322 (635)
                      +++|.+.+..|..++.+++|+.|++++|.++.++.       ++..+..+++|++|++++|.+.. +|.. +..+++|++
T Consensus       331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-------~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~  403 (520)
T 2z7x_B          331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSK-------IAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS  403 (520)
T ss_dssp             CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHH-------HHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred             eECCccChhhhhhhccCCCCCEEEccCCccCcccc-------chHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence            99999998889999999999999999999986543       22334667999999999999987 8876 788999999


Q ss_pred             EeccCCCCCCcCCCCC-CccceecccccccccccCccccCccccchhhhhhhhhcccccc-c--CCccceEEEcCCc
Q 006695          323 LHLKDCSMLSSLPELP-QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT-L--NSACVKFVFSNCL  395 (635)
Q Consensus       323 L~L~~n~~l~~lp~l~-~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~-l--~~~~~~l~~~nC~  395 (635)
                      |++++|++.+.+|... ++|+.|++++|... .+|..+..+++|+.+++++|++...... +  ....+.+++.+++
T Consensus       404 L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          404 LNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             EECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence            9999999988887654 79999999999654 7888888999999999999998865432 2  1223677777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-32  Score=322.40  Aligned_cols=368  Identities=18%  Similarity=0.166  Sum_probs=222.4

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeec-CCcccCCCccceEeecCCCCCCCC-CCCC-CCCC
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHL-DQGLEYLPNELRYLHWHEYPSKAL-PFDF-EPEN   78 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~l-p~~~-~l~~   78 (635)
                      .|||++|.+..+.+.+|.++++|++|++++|...        ..+ +..+..+++ |++|++++|.+..+ |..| .+++
T Consensus        28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~--------~~i~~~~f~~L~~-L~~L~Ls~N~l~~~~p~~~~~l~~   98 (844)
T 3j0a_A           28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP--------LTIDKEAFRNLPN-LRILDLGSSKIYFLHPDAFQGLFH   98 (844)
T ss_dssp             EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC--------CEECTTTTSSCTT-CCEEECTTCCCCEECTTSSCSCSS
T ss_pred             EEECCCCcCCccChhHCcccccCeEEeCCCCCCc--------cccCHHHhcCCCC-CCEEECCCCcCcccCHhHccCCcc
Confidence            6899999999999999999999999999998543        134 566777765 99999999999887 5556 7999


Q ss_pred             ceEEEcCCCCCcc-cccc--CCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCC--CCCCE
Q 006695           79 LVKLNLPYSKVVQ-IWEG--KKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNF--NHLSM  151 (635)
Q Consensus        79 L~~L~L~~n~l~~-l~~~--~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l--~~L~~  151 (635)
                      |++|+|++|.+.. ++..  +.++++|++|+|++|.+....+  .++++++|++|+|++|...+..+..++.+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            9999999999985 4544  8899999999999999876654  48999999999999997777666666665  66777


Q ss_pred             EeecCCCCCCccCCCC-C------CCCCcEEecCCCCCCCccCc------------------------------------
Q 006695          152 LCFEGCKSLRSFPSNL-H------FMSPIKIDFSSCFNLTEFPQ------------------------------------  188 (635)
Q Consensus       152 L~L~~~~~l~~lp~~~-~------l~~L~~L~l~~c~~l~~~p~------------------------------------  188 (635)
                      |++++|......|..+ .      ..+|+.|++++|......+.                                    
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            7766665544443322 1      12355666655421110000                                    


Q ss_pred             -----ccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCC
Q 006695          189 -----ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKME  262 (635)
Q Consensus       189 -----~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~  262 (635)
                           ...+|+.|++++|.+..++ ..+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..+..++
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence                 0134555555555555442 3345555555555555555544455555555555555555554444444555555


Q ss_pred             CCCEEEecCCCccccCc-hhcccccchhhcc---------CCCCccEEEcCCC--------------------CCCcccc
Q 006695          263 SVKCISLERTAITELPS-SFANLEGLKDLYI---------GGSSLRQLNLSRN--------------------DSESLPA  312 (635)
Q Consensus       263 ~L~~L~L~~n~l~~lp~-~~~~l~~L~~l~~---------~~~~L~~L~Ls~n--------------------~~~~lp~  312 (635)
                      +|+.|++++|.++.++. .+..+++|+.+..         .+++|+.|++++|                    +++.++.
T Consensus       339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~  418 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDI  418 (844)
T ss_dssp             TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTT
T ss_pred             CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCch
Confidence            55555555555544432 2333332222211         1123333333333                    3333221


Q ss_pred             --cccCCCCccEEeccCCCCCCcCC----CCCCccceecccccccc-----cccCccccCccccchhhhhhhhhccc
Q 006695          313 --SITQLSQLRSLHLKDCSMLSSLP----ELPQSLELLDAENCKQL-----QFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       313 --~l~~l~~L~~L~L~~n~~l~~lp----~l~~sL~~L~l~~c~~l-----~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                        .+..+++|++|+|++|++.+..+    ..+++|+.|++++|...     ...+..+..+++|+.|+|++|.+...
T Consensus       419 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  495 (844)
T 3j0a_A          419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL  495 (844)
T ss_dssp             HHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTC
T ss_pred             hhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccccc
Confidence              13466777777777766653322    22356666666666543     22233455566666666666655544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-33  Score=312.06  Aligned_cols=381  Identities=19%  Similarity=0.212  Sum_probs=268.7

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeec-CCcccCCCccceEeecCCCCCCCCCCC-C-CCCC
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHL-DQGLEYLPNELRYLHWHEYPSKALPFD-F-EPEN   78 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~   78 (635)
                      .||+++|.+..+.+.+|.++++|++|++++|.++         .+ +..+..+++ |++|++++|.+..+|.. | .+++
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~---------~i~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~  101 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSS  101 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC---------EECTTTTTTCTT-CCEEECTTCCCCEECTTTTTTCTT
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCC---------ccCcccccCchh-CCEEeCcCCcCCccCHhhhcCccc
Confidence            6899999999999999999999999999999887         33 345666655 99999999999988854 6 7999


Q ss_pred             ceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCC----CE
Q 006695           79 LVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHL----SM  151 (635)
Q Consensus        79 L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L----~~  151 (635)
                      |++|++++|+++.++. .+..+++|++|++++|.+.. .+| .++++++|++|++++|......+..++.+++|    +.
T Consensus       102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~  181 (570)
T 2z63_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (570)
T ss_dssp             CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence            9999999999999876 58999999999999998765 456 48999999999999997777767778888888    88


Q ss_pred             EeecCCCCCCccCCCCCCCCCcEEecCCCCCC------------------------------------------------
Q 006695          152 LCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNL------------------------------------------------  183 (635)
Q Consensus       152 L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l------------------------------------------------  183 (635)
                      |++++|......+..+...+|+.|+++++..-                                                
T Consensus       182 L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~  261 (570)
T 2z63_A          182 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  261 (570)
T ss_dssp             EECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred             cccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence            99988776555555555556777766554100                                                


Q ss_pred             ----------CccCc---ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhc-----------------
Q 006695          184 ----------TEFPQ---ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS-----------------  233 (635)
Q Consensus       184 ----------~~~p~---~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~-----------------  233 (635)
                                ...+.   ..++|++|++++|.++++|..+..+ +|++|++++|.+. .+|..                 
T Consensus       262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~  339 (570)
T 2z63_A          262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGN  339 (570)
T ss_dssp             EEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCS-SCCBCBCSSCCEEEEESCBSCC
T ss_pred             hhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCccc-ccCcccccccCEEeCcCCcccc
Confidence                      00111   1246777777777777777666655 6666666665544 22211                 


Q ss_pred             ---ccCCCCCcEEecCCCCCCCcc--hhhhcCCCCCCEEEecCCCccccCchhcccccchh---------------hccC
Q 006695          234 ---ICKLKSLHVLVLDDCSKLERF--PEILEKMESVKCISLERTAITELPSSFANLEGLKD---------------LYIG  293 (635)
Q Consensus       234 ---~~~l~~L~~L~Ls~n~~~~~~--~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~---------------l~~~  293 (635)
                         ...+++|++|++++|.+.+..  +..+..+++|+.|++++|.++.+|..+..+++|+.               .+..
T Consensus       340 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  419 (570)
T 2z63_A          340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS  419 (570)
T ss_dssp             BCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT
T ss_pred             ccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc
Confidence               145677777777777765543  66777788888888888887777665555444322               2344


Q ss_pred             CCCccEEEcCCCCCCc-ccccccCCCCccEEeccCCCCC-CcCCCC---CCccceecccccccccccCccccCccccchh
Q 006695          294 GSSLRQLNLSRNDSES-LPASITQLSQLRSLHLKDCSML-SSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDAS  368 (635)
Q Consensus       294 ~~~L~~L~Ls~n~~~~-lp~~l~~l~~L~~L~L~~n~~l-~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l  368 (635)
                      +++|++|++++|.+.. .|..+..+++|++|++++|.+. +.+|..   +++|+.|++++|......|..+..+++|+.+
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            5677777777777654 3445677777777777777665 355542   4677777777777666667777777777777


Q ss_pred             hhhhhhhcccccc---cCCccceEEEcCC
Q 006695          369 VLEKATFLNSAFT---LNSACVKFVFSNC  394 (635)
Q Consensus       369 ~L~~n~~~~~~~~---l~~~~~~l~~~nC  394 (635)
                      ++++|.+......   -....+.+++.++
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            7777766654221   1112255566554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6e-32  Score=309.28  Aligned_cols=365  Identities=18%  Similarity=0.160  Sum_probs=274.6

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L   79 (635)
                      +||+++|.+..+.+.+|.++++|++|++++|.++++        .+..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus        29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~--------~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L   99 (680)
T 1ziw_A           29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL--------EPELCQKLPM-LKVLNLQHNELSQLSDKTFAFCTNL   99 (680)
T ss_dssp             EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC--------CTTHHHHCTT-CCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc--------CHHHHhcccC-cCEEECCCCccCccChhhhccCCCC
Confidence            689999999999999999999999999999988732        2455566655 99999999999999985 6 79999


Q ss_pred             eEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCcccc--CCCCCCEEeec
Q 006695           80 VKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQ--NFNHLSMLCFE  155 (635)
Q Consensus        80 ~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~--~l~~L~~L~L~  155 (635)
                      ++|++++|+++.++ ..+..+++|++|+|++|.+....|. ++++++|++|++++|...+..+..+.  .+++|+.|+++
T Consensus       100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~  179 (680)
T 1ziw_A          100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS  179 (680)
T ss_dssp             SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT
T ss_pred             CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC
Confidence            99999999999887 5689999999999999998776664 88999999999999976665555443  56899999999


Q ss_pred             CCCCCCccCCCC-C---------------------------CCCCcEEecCCCCCCCccCccc-----CCcceEEecccc
Q 006695          156 GCKSLRSFPSNL-H---------------------------FMSPIKIDFSSCFNLTEFPQIS-----GNITDLILSETA  202 (635)
Q Consensus       156 ~~~~l~~lp~~~-~---------------------------l~~L~~L~l~~c~~l~~~p~~~-----~~L~~L~L~~n~  202 (635)
                      +|......|..+ .                           .++|+.|+++++......|..+     ++|++|++++|.
T Consensus       180 ~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~  259 (680)
T 1ziw_A          180 SNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN  259 (680)
T ss_dssp             TCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSC
T ss_pred             CCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCC
Confidence            986554444332 1                           2567788888765444444333     349999999999


Q ss_pred             ccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC-----cchh----hhcCCCCCCEEEecCC
Q 006695          203 IQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE-----RFPE----ILEKMESVKCISLERT  272 (635)
Q Consensus       203 i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~-----~~~~----~l~~l~~L~~L~L~~n  272 (635)
                      ++.++ ..++.+++|++|++++|.+.+..|..+.++++|+.|++++|...+     .+|.    .+..+++|++|++++|
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n  339 (680)
T 1ziw_A          260 LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN  339 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred             cCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence            98875 568899999999999999888888888888888888888764432     2332    5777888888888888


Q ss_pred             CccccC-chhcccccchhhccC------------------CCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCC
Q 006695          273 AITELP-SSFANLEGLKDLYIG------------------GSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLS  332 (635)
Q Consensus       273 ~l~~lp-~~~~~l~~L~~l~~~------------------~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~  332 (635)
                      .++.++ ..+..+++|+.+...                  .++|+.|++++|++..+ |..+..+++|+.|++++|.+.+
T Consensus       340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  419 (680)
T 1ziw_A          340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ  419 (680)
T ss_dssp             CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred             ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence            888664 345666665544332                  14688888888887766 4457788888888888887776


Q ss_pred             cCCC----CCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695          333 SLPE----LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF  375 (635)
Q Consensus       333 ~lp~----l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~  375 (635)
                      .+|.    ..++|++|++++|......+..+..+++|+.+++++|.+
T Consensus       420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l  466 (680)
T 1ziw_A          420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL  466 (680)
T ss_dssp             ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred             ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence            6653    346777777777765544444555555555555555544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-32  Score=304.93  Aligned_cols=355  Identities=17%  Similarity=0.147  Sum_probs=253.8

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L   79 (635)
                      +||+++|++..+.+.+|+++++|++|++++|.++.+        .+..+..+++ |++|++++|.+..+|.. + .+++|
T Consensus        56 ~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~--------~~~~~~~l~~-L~~L~L~~n~l~~l~~~~~~~l~~L  126 (570)
T 2z63_A           56 VLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL--------ALGAFSGLSS-LQKLVAVETNLASLENFPIGHLKTL  126 (570)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE--------CTTTTTTCTT-CCEEECTTSCCCCSTTCSCTTCTTC
T ss_pred             EEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc--------CHhhhcCccc-cccccccccccccCCCccccccccc
Confidence            689999999999999999999999999999988722        1355666655 99999999999988874 4 78999


Q ss_pred             eEEEcCCCCCcc--ccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCC---------------------------CCEEe
Q 006695           80 VKLNLPYSKVVQ--IWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPN---------------------------LERTN  129 (635)
Q Consensus        80 ~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~---------------------------L~~L~  129 (635)
                      ++|++++|.++.  +|..+.++++|++|++++|++....+ .++.+++                           |+.|+
T Consensus       127 ~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~  206 (570)
T 2z63_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT  206 (570)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEE
T ss_pred             cEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEe
Confidence            999999999885  68888889999999999887654332 1322222                           33333


Q ss_pred             ecCCC----------------------------------------------------------CCcccCccccCCCCCCE
Q 006695          130 LKNCI----------------------------------------------------------NLTCVPSSVQNFNHLSM  151 (635)
Q Consensus       130 L~~n~----------------------------------------------------------~l~~~~~~i~~l~~L~~  151 (635)
                      +++|.                                                          ..+.++..+..+++|+.
T Consensus       207 l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~  286 (570)
T 2z63_A          207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS  286 (570)
T ss_dssp             EESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSE
T ss_pred             cccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccE
Confidence            33320                                                          01112233455566777


Q ss_pred             EeecCCCCCCccCCCC-CCCCCcEEecCCC---------------------CCCCccC-cccCCcceEEecccccccc--
Q 006695          152 LCFEGCKSLRSFPSNL-HFMSPIKIDFSSC---------------------FNLTEFP-QISGNITDLILSETAIQEV--  206 (635)
Q Consensus       152 L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c---------------------~~l~~~p-~~~~~L~~L~L~~n~i~~l--  206 (635)
                      |++++|.. ..+|..+ .+ +|+.|++++|                     .....++ ..+++|++|++++|.++.+  
T Consensus       287 L~l~~~~l-~~l~~~~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  364 (570)
T 2z63_A          287 FSLVSVTI-ERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC  364 (570)
T ss_dssp             EEEESCEE-CSCCBCCSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred             EEecCccc-hhhhhhhccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccc
Confidence            77766543 3444443 23 5555555554                     3222222 2345677777777776655  


Q ss_pred             -CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch-hhhcCCCCCCEEEecCCCccccCchhccc
Q 006695          207 -PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAITELPSSFANL  284 (635)
Q Consensus       207 -p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~lp~~~~~l  284 (635)
                       |..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.++..+.     
T Consensus       365 ~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----  438 (570)
T 2z63_A          365 CSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----  438 (570)
T ss_dssp             EEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCT-----
T ss_pred             ccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccch-----
Confidence             45566777777777777766554443 7777777777777777666544 456777777777777777765432     


Q ss_pred             ccchhhccCCCCccEEEcCCCCCC--cccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccc
Q 006695          285 EGLKDLYIGGSSLRQLNLSRNDSE--SLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEIL  359 (635)
Q Consensus       285 ~~L~~l~~~~~~L~~L~Ls~n~~~--~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~  359 (635)
                          ..+..+++|+.|++++|.+.  .+|..+..+++|++|+|++|++.+..|..   +++|++|++++|......+..+
T Consensus       439 ----~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  514 (570)
T 2z63_A          439 ----GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIF  514 (570)
T ss_dssp             ----TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             ----hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHh
Confidence                22356789999999999986  68989999999999999999988877753   4799999999998777777789


Q ss_pred             cCccccchhhhhhhhhcc
Q 006695          360 SGLEEVDASVLEKATFLN  377 (635)
Q Consensus       360 ~~L~~L~~l~L~~n~~~~  377 (635)
                      ..+++|+.+++++|++.+
T Consensus       515 ~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          515 DRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCTTCCEEECCSSCBCC
T ss_pred             hcccCCcEEEecCCcccC
Confidence            999999999999998754

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1e-31  Score=314.30  Aligned_cols=368  Identities=17%  Similarity=0.171  Sum_probs=278.8

Q ss_pred             CeeecCCC-cccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCC-CCCC--C-C
Q 006695            1 MFLDLSKI-TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKA-LPFD--F-E   75 (635)
Q Consensus         1 i~LdLs~n-~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-lp~~--~-~   75 (635)
                      .+|||++| .+..+.+.+|.++++|++|+|++|.+++        ..|..+..+++ |++|++++|.+.. +|..  | .
T Consensus        51 ~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~--------~~p~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~  121 (844)
T 3j0a_A           51 QLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF--------LHPDAFQGLFH-LFELRLYFCGLSDAVLKDGYFRN  121 (844)
T ss_dssp             SEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE--------ECTTSSCSCSS-CCCEECTTCCCSSCCSTTCCCSS
T ss_pred             eEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc--------cCHhHccCCcc-cCEeeCcCCCCCcccccCccccc
Confidence            36899999 5667889999999999999999999872        23677777766 9999999999976 4554  5 7


Q ss_pred             CCCceEEEcCCCCCcccc--ccCCCCCCCcEEEccCCCCCCCCC-CCCCC--CCCCEEeecCCCCCcccCccccCCCC--
Q 006695           76 PENLVKLNLPYSKVVQIW--EGKKRAFKLKYVDIHNSQYLIRMP-DLSET--PNLERTNLKNCINLTCVPSSVQNFNH--  148 (635)
Q Consensus        76 l~~L~~L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l--~~L~~L~L~~n~~l~~~~~~i~~l~~--  148 (635)
                      +++|++|++++|.++.++  ..+.++++|++|+|++|.+....+ ++..+  ++|+.|++++|...+..|..++.+.+  
T Consensus       122 L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~  201 (844)
T 3j0a_A          122 LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF  201 (844)
T ss_dssp             CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT
T ss_pred             cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCcc
Confidence            999999999999998764  468999999999999999876665 46655  88999999998887777777766655  


Q ss_pred             ----CCEEeecCCCCCCccCCCC---------------------------------------CCCCCcEEecCCCCCCCc
Q 006695          149 ----LSMLCFEGCKSLRSFPSNL---------------------------------------HFMSPIKIDFSSCFNLTE  185 (635)
Q Consensus       149 ----L~~L~L~~~~~l~~lp~~~---------------------------------------~l~~L~~L~l~~c~~l~~  185 (635)
                          |+.|++++|......+..+                                       ..++|+.|++++|.....
T Consensus       202 ~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~  281 (844)
T 3j0a_A          202 RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL  281 (844)
T ss_dssp             TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEE
T ss_pred             ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCccccc
Confidence                8999998875433222111                                       136788999988754443


Q ss_pred             cCcc---cCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCC
Q 006695          186 FPQI---SGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKM  261 (635)
Q Consensus       186 ~p~~---~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l  261 (635)
                      .+..   +++|+.|+|++|.++.++ ..+..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+....+..+..+
T Consensus       282 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l  361 (844)
T 3j0a_A          282 NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL  361 (844)
T ss_dssp             CSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred             ChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence            3433   468899999999998874 568899999999999999888888889999999999999998877777788889


Q ss_pred             CCCCEEEecCCCccccCchhccccc----------c----------------------hhhccCCCCccEEEcCCCCCCc
Q 006695          262 ESVKCISLERTAITELPSSFANLEG----------L----------------------KDLYIGGSSLRQLNLSRNDSES  309 (635)
Q Consensus       262 ~~L~~L~L~~n~l~~lp~~~~~l~~----------L----------------------~~l~~~~~~L~~L~Ls~n~~~~  309 (635)
                      ++|+.|++++|.++.++. +..++.          +                      ...+..+++|+.|+|++|++..
T Consensus       362 ~~L~~L~Ls~N~l~~i~~-~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  440 (844)
T 3j0a_A          362 EKLQTLDLRDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS  440 (844)
T ss_dssp             CCCCEEEEETCCSCCCSS-CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred             CCCCEEECCCCCCCcccC-CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence            999999999888876553 111110          0                      0113367899999999999877


Q ss_pred             cccc--ccCCCCccEEeccCCCCCCcC-----CC---CCCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695          310 LPAS--ITQLSQLRSLHLKDCSMLSSL-----PE---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       310 lp~~--l~~l~~L~~L~L~~n~~l~~l-----p~---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      ++..  +..+++|+.|+|++|.+....     +.   .+++|+.|++++|......+..+..+++|+.|+|++|.+...
T Consensus       441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  519 (844)
T 3j0a_A          441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL  519 (844)
T ss_dssp             CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSC
T ss_pred             cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCcc
Confidence            6543  456788888888887765322     11   236777777777766666666677777777777777776644

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.98  E-value=2.5e-31  Score=297.27  Aligned_cols=355  Identities=14%  Similarity=0.101  Sum_probs=215.4

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      .||+++|.+..+.+.+|.++++|++|++++|.++++        .+..+..+++ |++|++++|.+..+|.. .+++|++
T Consensus        56 ~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~--------~~~~~~~l~~-L~~L~Ls~N~l~~lp~~-~l~~L~~  125 (562)
T 3a79_B           56 ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL--------DFHVFLFNQD-LEYLDVSHNRLQNISCC-PMASLRH  125 (562)
T ss_dssp             EEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE--------CTTTTTTCTT-CCEEECTTSCCCEECSC-CCTTCSE
T ss_pred             EEECCCCCccccChhhhccCCCccEEECCCCCCCcC--------CHHHhCCCCC-CCEEECCCCcCCccCcc-ccccCCE
Confidence            577777777777777777777777777777776621        2445555554 77777777777777776 7777777


Q ss_pred             EEcCCCCCcccc--ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCC--CEEeecCCCC--CcccCccccC----------
Q 006695           82 LNLPYSKVVQIW--EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNL--ERTNLKNCIN--LTCVPSSVQN----------  145 (635)
Q Consensus        82 L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L--~~L~L~~n~~--l~~~~~~i~~----------  145 (635)
                      |++++|+++.++  ..+.++++|++|+|++|++..  .++..+++|  +.|++++|..  .+..|..+..          
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l  203 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF  203 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEE
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEe
Confidence            777777777654  567777777777777776543  234444555  7777777765  4444444433          


Q ss_pred             ----------------CCCCCEEeecCCCCC--------------------------------CccCCCCCCCCCcEEec
Q 006695          146 ----------------FNHLSMLCFEGCKSL--------------------------------RSFPSNLHFMSPIKIDF  177 (635)
Q Consensus       146 ----------------l~~L~~L~L~~~~~l--------------------------------~~lp~~~~l~~L~~L~l  177 (635)
                                      +++|+.|++++|...                                ..++......+|+.|++
T Consensus       204 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l  283 (562)
T 3a79_B          204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI  283 (562)
T ss_dssp             CSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEE
T ss_pred             cCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEE
Confidence                            334455555443200                                00001112236777777


Q ss_pred             CCCCCCCccCccc-----CCcceEEecccccc--ccCc-cccc---CCCccEEEeecccccccchhcccCCCCCcEEecC
Q 006695          178 SSCFNLTEFPQIS-----GNITDLILSETAIQ--EVPS-SIEC---LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLD  246 (635)
Q Consensus       178 ~~c~~l~~~p~~~-----~~L~~L~L~~n~i~--~lp~-~~~~---l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls  246 (635)
                      ++|.....+|...     ++++.|.+.++...  .+|. .+..   ..+|+.|++++|.+....  ....+++|++|+++
T Consensus       284 ~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~  361 (562)
T 3a79_B          284 YNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFT  361 (562)
T ss_dssp             EEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECC
T ss_pred             eccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECC
Confidence            7765444566544     55555544433222  3442 2222   245777777776653221  11456677777777


Q ss_pred             CCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-cccc-ccCCCCccEEe
Q 006695          247 DCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-LPAS-ITQLSQLRSLH  324 (635)
Q Consensus       247 ~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-lp~~-l~~l~~L~~L~  324 (635)
                      +|.+.+..|..+..+++|+.|++++|+++.++.       ++..+..+++|+.|++++|.++. +|.. +..+++|++|+
T Consensus       362 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~  434 (562)
T 3a79_B          362 QNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK-------VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN  434 (562)
T ss_dssp             SSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH-------HHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred             CCccccchhhhhcccCCCCEEECCCCCcCCccc-------chhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence            777766666667777777777777777765543       11223455677777777777665 6654 56667777777


Q ss_pred             ccCCCCCCcCCCCC-CccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695          325 LKDCSMLSSLPELP-QSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       325 L~~n~~l~~lp~l~-~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      +++|++.+.+|..+ ++|+.|++++|. ++.+|..+..+++|+.+++++|.+...
T Consensus       435 l~~n~l~~~~~~~l~~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          435 LSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSV  488 (562)
T ss_dssp             CCSSCCCGGGGSSCCTTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred             CCCCCCCcchhhhhcCcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCCCCCC
Confidence            77777666665543 577777777764 345665555677777777777766644

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.98  E-value=4.4e-31  Score=287.31  Aligned_cols=353  Identities=14%  Similarity=0.131  Sum_probs=256.3

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCC-CCCC-CC-CCCCc
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSK-ALPF-DF-EPENL   79 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~-~lp~-~~-~l~~L   79 (635)
                      ++.+++.+..++.  +  .++|++|++++|.+++        ..+..+..+++ |++|++++|.+. .+|. .| .+++|
T Consensus        15 ~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~--------~~~~~~~~l~~-L~~L~L~~n~~~~~i~~~~~~~l~~L   81 (455)
T 3v47_A           15 AICINRGLHQVPE--L--PAHVNYVDLSLNSIAE--------LNETSFSRLQD-LQFLKVEQQTPGLVIRNNTFRGLSSL   81 (455)
T ss_dssp             EECCSSCCSSCCC--C--CTTCCEEECCSSCCCE--------ECTTTTSSCTT-CCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred             cCcCCCCcccCCC--C--CCccCEEEecCCccCc--------CChhHhccCcc-ccEEECcCCcccceECcccccccccC
Confidence            4566666666654  2  3778888888887772        12556666655 888888888775 5544 35 68888


Q ss_pred             eEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC-C--CCCCCCCCEEeecCCCCCcccCcc-ccCCCCCCEEee
Q 006695           80 VKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP-D--LSETPNLERTNLKNCINLTCVPSS-VQNFNHLSMLCF  154 (635)
Q Consensus        80 ~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~--l~~l~~L~~L~L~~n~~l~~~~~~-i~~l~~L~~L~L  154 (635)
                      ++|++++|+++.+ |..+..+++|++|+|++|.+....+ .  +..+++|++|+|++|...+..|.. ++.+++|++|++
T Consensus        82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A           82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            8888888888866 6678888888888888888665433 2  778888888888888766666665 788888888888


Q ss_pred             cCCCCCCccCCCC---CCCCCcEEecCCCCCCCccCc-----------ccCCcceEEeccccccc-cCcccccC---CCc
Q 006695          155 EGCKSLRSFPSNL---HFMSPIKIDFSSCFNLTEFPQ-----------ISGNITDLILSETAIQE-VPSSIECL---TNL  216 (635)
Q Consensus       155 ~~~~~l~~lp~~~---~l~~L~~L~l~~c~~l~~~p~-----------~~~~L~~L~L~~n~i~~-lp~~~~~l---~~L  216 (635)
                      ++|......+..+   ...+|+.|+++++......+.           ..++|++|++++|.++. +|..+...   ++|
T Consensus       162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L  241 (455)
T 3v47_A          162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI  241 (455)
T ss_dssp             TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred             CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence            8877655555544   336788888888653332211           12578888999888874 34444333   788


Q ss_pred             cEEEeecccccccc----------hhccc--CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhccc
Q 006695          217 EKLYINRCMRLKRL----------STSIC--KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANL  284 (635)
Q Consensus       217 ~~L~L~~n~~~~~l----------p~~~~--~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l  284 (635)
                      +.|++++|...+..          +..+.  ..++|+.|++++|.+.+..|..+..+++|+.|++++|.++.++..    
T Consensus       242 ~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~----  317 (455)
T 3v47_A          242 QSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN----  317 (455)
T ss_dssp             EEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT----
T ss_pred             eeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh----
Confidence            88888887654321          11121  236889999999888888888888899999999999988876431    


Q ss_pred             ccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCcccc
Q 006695          285 EGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILS  360 (635)
Q Consensus       285 ~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~  360 (635)
                           .+..+++|++|+|++|.++.+ |..+..+++|++|+|++|++.+..|..   +++|++|++++|......+..+.
T Consensus       318 -----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          318 -----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             -----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             -----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence                 234568889999999998877 456788899999999998887666653   47889999999876665556678


Q ss_pred             Cccccchhhhhhhhhcc
Q 006695          361 GLEEVDASVLEKATFLN  377 (635)
Q Consensus       361 ~L~~L~~l~L~~n~~~~  377 (635)
                      .+++|+.+++++|++.+
T Consensus       393 ~l~~L~~L~l~~N~l~~  409 (455)
T 3v47_A          393 RLTSLQKIWLHTNPWDC  409 (455)
T ss_dssp             TCTTCCEEECCSSCBCC
T ss_pred             cCCcccEEEccCCCccc
Confidence            88899999999988754

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.98  E-value=2.4e-30  Score=296.06  Aligned_cols=389  Identities=19%  Similarity=0.185  Sum_probs=221.5

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L   79 (635)
                      +||+++|.+..+.+.+|+++++|++|++++|.++.++.        ..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus        53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~--------~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L  123 (680)
T 1ziw_A           53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD--------KTFAFCTN-LTELHLMSNSIQKIKNNPFVKQKNL  123 (680)
T ss_dssp             EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT--------TTTTTCTT-CSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred             EEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh--------hhhccCCC-CCEEECCCCccCccChhHccccCCC
Confidence            57777777777777777777777777777777663331        12333332 55555555555444432 3 34455


Q ss_pred             eEEEcCCCCCcccc-ccCCCCCCC--------------------------cEEEccCCCCCCCCCC--------------
Q 006695           80 VKLNLPYSKVVQIW-EGKKRAFKL--------------------------KYVDIHNSQYLIRMPD--------------  118 (635)
Q Consensus        80 ~~L~L~~n~l~~l~-~~~~~l~~L--------------------------~~L~Ls~n~~~~~~p~--------------  118 (635)
                      ++|++++|.+..++ ..+..+++|                          +.|++++|.+....|.              
T Consensus       124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  203 (680)
T 1ziw_A          124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN  203 (680)
T ss_dssp             CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred             CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence            55555554444332 223334444                          4444444433222211              


Q ss_pred             --------------------------------------CCCC--CCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC
Q 006695          119 --------------------------------------LSET--PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK  158 (635)
Q Consensus       119 --------------------------------------l~~l--~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~  158 (635)
                                                            +..+  ++|++|++++|...+..+..++.+++|+.|++++|.
T Consensus       204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  283 (680)
T 1ziw_A          204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN  283 (680)
T ss_dssp             TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCC
T ss_pred             ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCc
Confidence                                                  1111  124444554444443344445555555555555554


Q ss_pred             CCCccCCCC-CCCCCcEEecCCCCCCC-----ccC-------cccCCcceEEeccccccccCc-ccccCCCccEEEeecc
Q 006695          159 SLRSFPSNL-HFMSPIKIDFSSCFNLT-----EFP-------QISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRC  224 (635)
Q Consensus       159 ~l~~lp~~~-~l~~L~~L~l~~c~~l~-----~~p-------~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n  224 (635)
                      .....|..+ .+++|+.|+++++..-.     .+|       ...++|++|++++|.++.++. .+.++++|++|++++|
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          284 IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence            333333333 44555555554432110     111       123566777777777766543 3555555555555444


Q ss_pred             ----------------------------cccccchhcccCCCCCcEEecCCCCCCCcch-hhhcCCCCCCEEEecCCCcc
Q 006695          225 ----------------------------MRLKRLSTSICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCISLERTAIT  275 (635)
Q Consensus       225 ----------------------------~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~  275 (635)
                                                  .+.+..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.++
T Consensus       364 ~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~  443 (680)
T 1ziw_A          364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL  443 (680)
T ss_dssp             BSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEE
T ss_pred             chhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcc
Confidence                                        3444445566667777777777776665444 56667777777777777766


Q ss_pred             ccC-chhcccccc----------------hhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCc----
Q 006695          276 ELP-SSFANLEGL----------------KDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSS----  333 (635)
Q Consensus       276 ~lp-~~~~~l~~L----------------~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~----  333 (635)
                      .++ ..+..++.|                +..+..+++|+.|++++|+++.+|.. +.++++|++|++++|++.+.    
T Consensus       444 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  523 (680)
T 1ziw_A          444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHA  523 (680)
T ss_dssp             ECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTT
T ss_pred             eeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhh
Confidence            443 233333322                33445668889999999998888754 78889999999998876543    


Q ss_pred             CC-------CCCCccceecccccccccccCccccCccccchhhhhhhhhccccccc---CCccceEEEcCCcccchh
Q 006695          334 LP-------ELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTL---NSACVKFVFSNCLKLNEK  400 (635)
Q Consensus       334 lp-------~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~l---~~~~~~l~~~nC~~L~~~  400 (635)
                      +|       ...++|+.|++++|......+..+..+++|+.++|++|.+.......   ....+.+++.++ +++..
T Consensus       524 ~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~  599 (680)
T 1ziw_A          524 NPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSV  599 (680)
T ss_dssp             STTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBC
T ss_pred             ccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCcc
Confidence            12       12478899999998766444456888999999999999887653321   223367777777 45443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.98  E-value=3.9e-31  Score=294.73  Aligned_cols=366  Identities=15%  Similarity=0.186  Sum_probs=257.3

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCce
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLV   80 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~   80 (635)
                      .|.+++.+..++...+   ++|++|++++|.++++        .+..+..+++ |++|++++|.+..++.. | .+++|+
T Consensus        10 c~~~~~~l~~ip~~~~---~~L~~L~Ls~n~l~~~--------~~~~~~~l~~-L~~L~Ls~n~i~~~~~~~~~~l~~L~   77 (549)
T 2z81_A           10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYI--------GHGDLRACAN-LQVLILKSSRINTIEGDAFYSLGSLE   77 (549)
T ss_dssp             EECTTSCCSSCCSCCC---TTCCEEECCSSCCCEE--------CSSTTSSCTT-CCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             EECCCCccccccccCC---CCccEEECcCCccCcc--------ChhhhhcCCc-ccEEECCCCCcCccChhhccccccCC
Confidence            5778888888877543   7899999999998722        2456777765 99999999999998854 5 799999


Q ss_pred             EEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccC-ccccCCCCCCEEeecC
Q 006695           81 KLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVP-SSVQNFNHLSMLCFEG  156 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~-~~i~~l~~L~~L~L~~  156 (635)
                      +|++++|+++.++.. +..+++|++|+|++|.+.. ..| .++++++|++|++++|...+.+| ..++.+++|++|++++
T Consensus        78 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A           78 HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             EEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred             EEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC
Confidence            999999999988765 8999999999999999765 334 59999999999999998677776 5799999999999999


Q ss_pred             CCCCCccCCCC-CCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC------------------------
Q 006695          157 CKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP------------------------  207 (635)
Q Consensus       157 ~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp------------------------  207 (635)
                      |......|..+ .+++|+.|+++++.. ..+|.    .+++|++|++++|.++.++                        
T Consensus       158 n~l~~~~~~~l~~l~~L~~L~l~~n~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~  236 (549)
T 2z81_A          158 LSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT  236 (549)
T ss_dssp             TTCCEECTTTTTTCSEEEEEEEECSBS-TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEE
T ss_pred             CcccccChhhhhccccCceEecccCcc-cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccc
Confidence            88776666655 555566666555432 22221    1234455555554444321                        


Q ss_pred             --------cccccC-----------------------------------------------------------CCccEEE
Q 006695          208 --------SSIECL-----------------------------------------------------------TNLEKLY  220 (635)
Q Consensus       208 --------~~~~~l-----------------------------------------------------------~~L~~L~  220 (635)
                              ..+..+                                                           ++|+.|+
T Consensus       237 ~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~  316 (549)
T 2z81_A          237 DESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT  316 (549)
T ss_dssp             HHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEE
T ss_pred             hhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEE
Confidence                    011112                                                           2344444


Q ss_pred             eecccccccchhcc-cCCCCCcEEecCCCCCCCcchh---hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695          221 INRCMRLKRLSTSI-CKLKSLHVLVLDDCSKLERFPE---ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS  296 (635)
Q Consensus       221 L~~n~~~~~lp~~~-~~l~~L~~L~Ls~n~~~~~~~~---~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~  296 (635)
                      +++|.+. .+|..+ ..+++|++|++++|.+.+.+|.   .++.+++|+.|++++|.++.++..       ...+..+++
T Consensus       317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~~l~~  388 (549)
T 2z81_A          317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT-------GEILLTLKN  388 (549)
T ss_dssp             EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHH-------HHHGGGCTT
T ss_pred             eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccc-------hhhhhcCCC
Confidence            4444432 334333 3577777777777777665543   256677777777777777765421       012455688


Q ss_pred             ccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695          297 LRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF  375 (635)
Q Consensus       297 L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~  375 (635)
                      |++|++++|+++.+|..+..+++|++|++++|.+. .+|. .+++|+.|++++|...+.    ...+++|+.|+|++|++
T Consensus       389 L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l  463 (549)
T 2z81_A          389 LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKL  463 (549)
T ss_dssp             CCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhh----cccCChhcEEECCCCcc
Confidence            99999999999999988889999999999998754 4444 567899999999965442    25778899999999987


Q ss_pred             ccccc-ccCCccceEEEcCC
Q 006695          376 LNSAF-TLNSACVKFVFSNC  394 (635)
Q Consensus       376 ~~~~~-~l~~~~~~l~~~nC  394 (635)
                      ..... ......+.+++.++
T Consensus       464 ~~ip~~~~l~~L~~L~Ls~N  483 (549)
T 2z81_A          464 KTLPDASLFPVLLVMKISRN  483 (549)
T ss_dssp             SSCCCGGGCTTCCEEECCSS
T ss_pred             CcCCCcccCccCCEEecCCC
Confidence            64321 11122355555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.98  E-value=1.4e-30  Score=284.35  Aligned_cols=338  Identities=16%  Similarity=0.192  Sum_probs=256.1

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      .|+++++.+..++  .|..+++|++|++++|.+++++         . +..+++ |++|++++|.+..++....+++|++
T Consensus        50 ~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~---------~-~~~l~~-L~~L~l~~n~l~~~~~~~~l~~L~~  116 (466)
T 1o6v_A           50 TLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT---------P-LKNLTK-LVDILMNNNQIADITPLANLTNLTG  116 (466)
T ss_dssp             EEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG---------G-GTTCTT-CCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             EEecCCCCCccCc--chhhhcCCCEEECCCCccCCch---------h-hhcccc-CCEEECCCCccccChhhcCCCCCCE
Confidence            5778888777764  3788888888888888877332         2 555544 8888888888888877337888888


Q ss_pred             EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695           82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR  161 (635)
Q Consensus        82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~  161 (635)
                      |++++|.++.++. +..+++|++|++++|.+. .++.++.+++|+.|++.++ . ..++ .++.+++|+.|++++|. +.
T Consensus       117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~~-~-~~~~-~~~~l~~L~~L~l~~n~-l~  190 (466)
T 1o6v_A          117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFGNQ-V-TDLK-PLANLTTLERLDISSNK-VS  190 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEEEEEEEEC-CCGGGTTCTTCSEEEEEES-C-CCCG-GGTTCTTCCEEECCSSC-CC
T ss_pred             EECCCCCCCCChH-HcCCCCCCEEECCCCccC-CChhhccCCcccEeecCCc-c-cCch-hhccCCCCCEEECcCCc-CC
Confidence            8888888888765 788888888888888744 4567888888888888642 2 2232 38888889999988876 44


Q ss_pred             ccCCCCCCCCCcEEecCCCCCCCccC-cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCC
Q 006695          162 SFPSNLHFMSPIKIDFSSCFNLTEFP-QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSL  240 (635)
Q Consensus       162 ~lp~~~~l~~L~~L~l~~c~~l~~~p-~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L  240 (635)
                      .++....+++|+.|++++|......+ ..+++|++|++++|.++.++ .+..+++|+.|++++|.+.+..+  +..+++|
T Consensus       191 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L  267 (466)
T 1o6v_A          191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLTKL  267 (466)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred             CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhcCCCC
Confidence            45544478888888888875433333 33478888899888888874 57788889999998888776554  7788889


Q ss_pred             cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCc
Q 006695          241 HVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL  320 (635)
Q Consensus       241 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L  320 (635)
                      +.|++++|.+.+..+  +..+++|+.|++++|.++.++.           +..+++|+.|++++|++..++. +..+++|
T Consensus       268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L  333 (466)
T 1o6v_A          268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP-----------ISNLKNLTYLTLYFNNISDISP-VSSLTKL  333 (466)
T ss_dssp             SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-----------GGGCTTCSEEECCSSCCSCCGG-GGGCTTC
T ss_pred             CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-----------hcCCCCCCEEECcCCcCCCchh-hccCccC
Confidence            999998887776544  7788889999999888887654           2456888999999998887765 7788899


Q ss_pred             cEEeccCCCCCCcCCC--CCCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695          321 RSLHLKDCSMLSSLPE--LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       321 ~~L~L~~n~~l~~lp~--l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      ++|++++|++.+. +.  .+++|+.|++++|......|  +..+++|+.+++++|++...
T Consensus       334 ~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          334 QRLFFYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CEeECCCCccCCc-hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            9999998866543 43  34788899999887766555  78888888888888877653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=7.6e-31  Score=285.43  Aligned_cols=334  Identities=17%  Similarity=0.148  Sum_probs=269.5

Q ss_pred             CCccceEeecCCCCCCCCC-CCC-CCCCceEEEcCCCCCc-cc-cccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCE
Q 006695           53 LPNELRYLHWHEYPSKALP-FDF-EPENLVKLNLPYSKVV-QI-WEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLER  127 (635)
Q Consensus        53 l~~~L~~L~l~~~~l~~lp-~~~-~l~~L~~L~L~~n~l~-~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~  127 (635)
                      ++.+|++|++++|.++.++ ..| .+++|++|++++|.+. .+ +..+..+++|++|+|++|++....| .++++++|++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            4467999999999999884 446 7999999999999986 55 4568999999999999999877766 5999999999


Q ss_pred             EeecCCCCCcccCcc--ccCCCCCCEEeecCCCCCCccCCC-C-CCCCCcEEecCCCCCCCccCccc-----CCcceEEe
Q 006695          128 TNLKNCINLTCVPSS--VQNFNHLSMLCFEGCKSLRSFPSN-L-HFMSPIKIDFSSCFNLTEFPQIS-----GNITDLIL  198 (635)
Q Consensus       128 L~L~~n~~l~~~~~~--i~~l~~L~~L~L~~~~~l~~lp~~-~-~l~~L~~L~l~~c~~l~~~p~~~-----~~L~~L~L  198 (635)
                      |+|++|...+.++..  ++.+++|++|++++|......|.. + .+++|+.|++++|......+..+     .+++.|++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            999999877655555  999999999999998876666765 3 89999999999986555444433     57889999


Q ss_pred             ccccccccCcc---------cccCCCccEEEeecccccccchhcccCC---CCCcEEecCCCCCCCcc----------hh
Q 006695          199 SETAIQEVPSS---------IECLTNLEKLYINRCMRLKRLSTSICKL---KSLHVLVLDDCSKLERF----------PE  256 (635)
Q Consensus       199 ~~n~i~~lp~~---------~~~l~~L~~L~L~~n~~~~~lp~~~~~l---~~L~~L~Ls~n~~~~~~----------~~  256 (635)
                      ++|.+..++..         +..+++|++|++++|.+.+..|..+...   ++|+.|++++|...+..          +.
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence            99999987643         3466899999999999998888776553   89999999998655421          11


Q ss_pred             hhc--CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCCc
Q 006695          257 ILE--KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLSS  333 (635)
Q Consensus       257 ~l~--~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~~  333 (635)
                      .+.  ..++|+.|++++|.++.++..         .+..+++|++|+|++|.++.++ ..+..+++|++|+|++|.+.+.
T Consensus       268 ~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  338 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKSKIFALLKS---------VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI  338 (455)
T ss_dssp             TTGGGTTSCCCEEECCSSCCCEECTT---------TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             ccccccccCceEEEecCccccccchh---------hcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc
Confidence            222  236899999999999976432         2356689999999999998874 5789999999999999988666


Q ss_pred             CCCC---CCccceecccccccccccCccccCccccchhhhhhhhhcccccc---cCCccceEEEcCCc
Q 006695          334 LPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFT---LNSACVKFVFSNCL  395 (635)
Q Consensus       334 lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~---l~~~~~~l~~~nC~  395 (635)
                      .|..   +++|++|++++|......|..+..+++|+.+++++|.+......   .....+.+++.+++
T Consensus       339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence            5653   58999999999988777788999999999999999999876432   12234778887763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.97  E-value=1.2e-30  Score=283.49  Aligned_cols=349  Identities=20%  Similarity=0.230  Sum_probs=217.6

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCC-CCcccceee-------------------ec----CCcccCCCccc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHN-GVPIMISKV-------------------HL----DQGLEYLPNEL   57 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~-~~~~~~~~~-------------------~l----~~~l~~l~~~L   57 (635)
                      .|++++|.+..+ |.+|++|++|++|++++|.++ .+|...+.+                   .+    ..++...+.+|
T Consensus        15 ~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~~~L   93 (454)
T 1jl5_A           15 EPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHL   93 (454)
T ss_dssp             --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCCTTC
T ss_pred             hhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCcCCC
Confidence            467777777544 556788888877777776654 122211110                   00    01111233457


Q ss_pred             eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCc
Q 006695           58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLT  137 (635)
Q Consensus        58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~  137 (635)
                      ++|++++|.++.+|..  +.+|++|++++|+++.++..   .++|++|++++|++.. +|+++++++|++|++++|... 
T Consensus        94 ~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-  166 (454)
T 1jl5_A           94 ESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-  166 (454)
T ss_dssp             SEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-
T ss_pred             CEEEccCCcCCccccc--cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-
Confidence            7777777777777654  36777777777777766542   2688888888887654 778888888889988888544 


Q ss_pred             ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCcc
Q 006695          138 CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLE  217 (635)
Q Consensus       138 ~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~  217 (635)
                      .+|..+   .+|++|++++|. ++.+|....+++|+.|++++| .++.+|..+.+|++|++++|.++.+|. ++.+++|+
T Consensus       167 ~lp~~~---~~L~~L~L~~n~-l~~l~~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~n~l~~lp~-~~~l~~L~  240 (454)
T 1jl5_A          167 KLPDLP---PSLEFIAAGNNQ-LEELPELQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLT  240 (454)
T ss_dssp             CCCCCC---TTCCEEECCSSC-CSSCCCCTTCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCC
T ss_pred             ccCCCc---ccccEEECcCCc-CCcCccccCCCCCCEEECCCC-cCCcCCCCcCcccEEECcCCcCCcccc-cCCCCCCC
Confidence            456443   588888888875 444775458888999999886 455677777889999999999998884 88899999


Q ss_pred             EEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc-------hhh
Q 006695          218 KLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL-------KDL  290 (635)
Q Consensus       218 ~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L-------~~l  290 (635)
                      +|++++|.+.+ +|.   .+++|+.|++++|.+.+ +|..   +++|+.|++++|.++.+|....++..|       .. 
T Consensus       241 ~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-  311 (454)
T 1jl5_A          241 TIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-  311 (454)
T ss_dssp             EEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-
T ss_pred             EEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-
Confidence            99999988764 443   24788999998887665 4432   478888888888888765322222111       11 


Q ss_pred             ccCC-CCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceeccccccccc--ccCccccCc-----
Q 006695          291 YIGG-SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQ--FIPEILSGL-----  362 (635)
Q Consensus       291 ~~~~-~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~--~~~~~~~~L-----  362 (635)
                      +... ++|+.|++++|+++.+|..   +++|++|++++|.+. .+|..+++|++|++++|...+  .+|..+..+     
T Consensus       312 i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~-~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~  387 (454)
T 1jl5_A          312 LCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSH  387 (454)
T ss_dssp             ECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-
T ss_pred             ccCCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc-cccchhhhccEEECCCCCCCcCCCChHHHHhhhhccc
Confidence            1122 4788888888888777754   578888888887654 577777788888888887766  667777666     


Q ss_pred             --------cccchhhhhhhhhcc
Q 006695          363 --------EEVDASVLEKATFLN  377 (635)
Q Consensus       363 --------~~L~~l~L~~n~~~~  377 (635)
                              ++|+.+++++|++..
T Consensus       388 ~~~i~~~~~~L~~L~ls~N~l~~  410 (454)
T 1jl5_A          388 LAEVPELPQNLKQLHVETNPLRE  410 (454)
T ss_dssp             -----------------------
T ss_pred             ccccccccCcCCEEECCCCcCCc
Confidence                    678888888877764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.97  E-value=9.4e-32  Score=297.82  Aligned_cols=347  Identities=17%  Similarity=0.145  Sum_probs=268.1

Q ss_pred             CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCC--CCCC-CCC
Q 006695            1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKAL--PFDF-EPE   77 (635)
Q Consensus         1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~l--p~~~-~l~   77 (635)
                      .+||+++|++..+.+.+|+++++|++|++++|.++.         +|..  .++ +|++|++++|.+..+  |..| .++
T Consensus        48 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~---------lp~~--~l~-~L~~L~L~~N~l~~~~~p~~~~~l~  115 (520)
T 2z7x_B           48 RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK---------ISCH--PTV-NLKHLDLSFNAFDALPICKEFGNMS  115 (520)
T ss_dssp             CEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE---------EECC--CCC-CCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred             cEEecCCCccCCcChHHhhcccCCCEEecCCCceee---------cCcc--ccC-CccEEeccCCccccccchhhhccCC
Confidence            369999999999999999999999999999999883         4444  444 499999999999874  5666 799


Q ss_pred             CceEEEcCCCCCccccccCCCCCCC--cEEEccCCCC--CCCCC-CC--------------------------CCCCCCC
Q 006695           78 NLVKLNLPYSKVVQIWEGKKRAFKL--KYVDIHNSQY--LIRMP-DL--------------------------SETPNLE  126 (635)
Q Consensus        78 ~L~~L~L~~n~l~~l~~~~~~l~~L--~~L~Ls~n~~--~~~~p-~l--------------------------~~l~~L~  126 (635)
                      +|++|++++|.++.  ..+..+++|  +.|++++|.+  ....| .+                          ..+++|+
T Consensus       116 ~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  193 (520)
T 2z7x_B          116 QLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE  193 (520)
T ss_dssp             TCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEE
T ss_pred             cceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccccee
Confidence            99999999999986  456677777  9999999987  33333 12                          3466777


Q ss_pred             EEeecCCC-------CCcccCccccCCC---------------------------CCCEEeecCCCCCCccCCCC-----
Q 006695          127 RTNLKNCI-------NLTCVPSSVQNFN---------------------------HLSMLCFEGCKSLRSFPSNL-----  167 (635)
Q Consensus       127 ~L~L~~n~-------~l~~~~~~i~~l~---------------------------~L~~L~L~~~~~l~~lp~~~-----  167 (635)
                      .|++++|.       ..+.++ .++.++                           +|+.|++++|+..+.+|..+     
T Consensus       194 ~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  272 (520)
T 2z7x_B          194 LSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG  272 (520)
T ss_dssp             ECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCS
T ss_pred             eccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhccc
Confidence            77777764       222222 344444                           55555555555444555543     


Q ss_pred             -CCCCCcEEecCCCCCCCccCc-cc------CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCC
Q 006695          168 -HFMSPIKIDFSSCFNLTEFPQ-IS------GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS  239 (635)
Q Consensus       168 -~l~~L~~L~l~~c~~l~~~p~-~~------~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~  239 (635)
                       .++.|+.++++++..  .+|. .+      .+|+.|++++|.+..++. ...+++|++|++++|.+.+..|..++.+++
T Consensus       273 ~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  349 (520)
T 2z7x_B          273 TSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTE  349 (520)
T ss_dssp             CCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSS
T ss_pred             ccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCC
Confidence             466677777776544  4441 11      458889999888876642 268899999999999999989999999999


Q ss_pred             CcEEecCCCCCCC--cchhhhcCCCCCCEEEecCCCccc-cCchhcccccchhhccCCCCccEEEcCCCCCC-ccccccc
Q 006695          240 LHVLVLDDCSKLE--RFPEILEKMESVKCISLERTAITE-LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE-SLPASIT  315 (635)
Q Consensus       240 L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~-~lp~~l~  315 (635)
                      |++|++++|.+.+  .+|..+..+++|+.|++++|.++. +|...         +..+++|++|++++|.++ .+|..+.
T Consensus       350 L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~---------~~~l~~L~~L~Ls~N~l~~~~~~~l~  420 (520)
T 2z7x_B          350 LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD---------CSWTKSLLSLNMSSNILTDTIFRCLP  420 (520)
T ss_dssp             CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCS---------CCCCTTCCEEECCSSCCCGGGGGSCC
T ss_pred             CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccch---------hccCccCCEEECcCCCCCcchhhhhc
Confidence            9999999999887  677889999999999999999997 87641         345689999999999984 5555543


Q ss_pred             CCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCcc-ccCccccchhhhhhhhhccc
Q 006695          316 QLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEI-LSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       316 ~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~-~~~L~~L~~l~L~~n~~~~~  378 (635)
                        ++|++|++++|++. .+|.   .+++|++|++++|... .+|.. +..+++|+.+++++|++.+.
T Consensus       421 --~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          421 --PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             --TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             --ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCccc
Confidence              79999999998776 7776   3589999999999755 56665 88999999999999988653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.97  E-value=1.4e-30  Score=291.34  Aligned_cols=360  Identities=13%  Similarity=0.115  Sum_probs=243.1

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCC-CC-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPF-DF-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L   79 (635)
                      ++|++++++..++...+   ++|+.|++++|.+++++        +..+..+++ |++|++++|.+..++. .| .+++|
T Consensus        35 ~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~--------~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~l~~L  102 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELR--------MPDISFLSE-LRVLRLSHNRIRSLDFHVFLFNQDL  102 (562)
T ss_dssp             EEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCC--------GGGTTTCTT-CCEEECCSCCCCEECTTTTTTCTTC
T ss_pred             EEEcCCCCCccCCCCCC---CCcCEEECCCCCccccC--------hhhhccCCC-ccEEECCCCCCCcCCHHHhCCCCCC
Confidence            58899998888776543   78999999999887332        356666665 9999999999988854 46 78999


Q ss_pred             eEEEcCCCCCccccccCCCCCCCcEEEccCCCCCC-CCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCC--CEEeec
Q 006695           80 VKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLI-RMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHL--SMLCFE  155 (635)
Q Consensus        80 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~-~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L--~~L~L~  155 (635)
                      ++|++++|+++.+|..  .+++|++|+|++|++.. ..| .++++++|++|++++|....   ..+..+++|  +.|+++
T Consensus       103 ~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B          103 EYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLD  177 (562)
T ss_dssp             CEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEE
T ss_pred             CEEECCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEEee
Confidence            9999999999998877  78999999999998765 234 58889999999999986554   345556666  999998


Q ss_pred             CCCC--CCccCCCC---------------------------CCCCCcEEecCCCCCC-CccC------ccc---------
Q 006695          156 GCKS--LRSFPSNL---------------------------HFMSPIKIDFSSCFNL-TEFP------QIS---------  190 (635)
Q Consensus       156 ~~~~--l~~lp~~~---------------------------~l~~L~~L~l~~c~~l-~~~p------~~~---------  190 (635)
                      +|..  ....|..+                           .+++|+.++++++... ..++      ...         
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            8876  44444333                           1233444444443100 0000      000         


Q ss_pred             ------------------CCcceEEecccccc-ccCccc-----ccCCCccEEEeecccccccch-hccc---CCCCCcE
Q 006695          191 ------------------GNITDLILSETAIQ-EVPSSI-----ECLTNLEKLYINRCMRLKRLS-TSIC---KLKSLHV  242 (635)
Q Consensus       191 ------------------~~L~~L~L~~n~i~-~lp~~~-----~~l~~L~~L~L~~n~~~~~lp-~~~~---~l~~L~~  242 (635)
                                        .+|++|++++|.++ .+|..+     ..++.|+.+++..+.+  .+| ..+.   ...+|++
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~  335 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKM  335 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceE
Confidence                              13444444444443 344333     3333333333333332  111 1111   1145777


Q ss_pred             EecCCCCCCCcchhhhcCCCCCCEEEecCCCccc-cCchhcccccchhhccCCCCccEEEcCCCCCCccc---ccccCCC
Q 006695          243 LVLDDCSKLERFPEILEKMESVKCISLERTAITE-LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP---ASITQLS  318 (635)
Q Consensus       243 L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp---~~l~~l~  318 (635)
                      |++++|.+....  ....+++|++|++++|.++. +|..+          ..+++|+.|++++|+++.++   ..+..++
T Consensus       336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  403 (562)
T 3a79_B          336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGC----------STLKRLQTLILQRNGLKNFFKVALMTKNMS  403 (562)
T ss_dssp             EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC----------CSCSSCCEEECCSSCCCBTTHHHHTTTTCT
T ss_pred             EEccCCCccccc--CccCCCCceEEECCCCccccchhhhh----------cccCCCCEEECCCCCcCCcccchhhhcCCC
Confidence            777776654322  12678999999999999996 45544          55689999999999998765   5689999


Q ss_pred             CccEEeccCCCCCCcCCC----CCCccceecccccccccccCccccCccccchhhhhhhhhcccccccC--CccceEEEc
Q 006695          319 QLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNSAFTLN--SACVKFVFS  392 (635)
Q Consensus       319 ~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~~~l~--~~~~~l~~~  392 (635)
                      +|++|++++|++.+.+|.    .+++|+.|++++|...+.++..+.  ++|+.|++++|.+........  ...+.+++.
T Consensus       404 ~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~  481 (562)
T 3a79_B          404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVA  481 (562)
T ss_dssp             TCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECC
T ss_pred             CCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECC
Confidence            999999999998886775    358999999999987766665543  689999999998876532221  123667776


Q ss_pred             CC
Q 006695          393 NC  394 (635)
Q Consensus       393 nC  394 (635)
                      ++
T Consensus       482 ~N  483 (562)
T 3a79_B          482 SN  483 (562)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=6.2e-30  Score=278.06  Aligned_cols=332  Identities=17%  Similarity=0.134  Sum_probs=168.7

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      +||+++|.+..++  +|.++++|++|++++|.++++         +  +..+++ |++|++++|.+..+| ...+++|++
T Consensus        46 ~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~---------~--~~~l~~-L~~L~Ls~N~l~~~~-~~~l~~L~~  110 (457)
T 3bz5_A           46 SLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL---------D--LSQNTN-LTYLACDSNKLTNLD-VTPLTKLTY  110 (457)
T ss_dssp             EEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC---------C--CTTCTT-CSEEECCSSCCSCCC-CTTCTTCCE
T ss_pred             EEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE---------c--cccCCC-CCEEECcCCCCceee-cCCCCcCCE
Confidence            4556666555542  455666666666666555521         1  233332 666666666665554 124556666


Q ss_pred             EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695           82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR  161 (635)
Q Consensus        82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~  161 (635)
                      |++++|+++.++  +..+++|++|++++|++.. + +++.+++|++|++++|...+.+  .++.+++|+.|++++|+ ++
T Consensus       111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~  183 (457)
T 3bz5_A          111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-I-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-IT  183 (457)
T ss_dssp             EECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-C-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CC
T ss_pred             EECCCCcCCeec--CCCCCcCCEEECCCCccce-e-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cc
Confidence            666666665553  5555666666666665433 2 2555566666666665444444  35555666666665543 23


Q ss_pred             ccCCCCCCCCCcEEecCCCCCCCccC-cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCC--
Q 006695          162 SFPSNLHFMSPIKIDFSSCFNLTEFP-QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK--  238 (635)
Q Consensus       162 ~lp~~~~l~~L~~L~l~~c~~l~~~p-~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~--  238 (635)
                      .+| ...+++|+.|++++|. ++.++ ...++|++|++++|.++++|  ++.+++|+.|++++|.+.+..+..+.+++  
T Consensus       184 ~l~-l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L  259 (457)
T 3bz5_A          184 ELD-VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL  259 (457)
T ss_dssp             CCC-CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred             eec-cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence            343 2245556666665543 22222 22345566666666666655  55556666666666655544333333332  


Q ss_pred             -----CCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccCCCCccEEEcCCCCCCcccc
Q 006695          239 -----SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA  312 (635)
Q Consensus       239 -----~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~  312 (635)
                           +|+.|++++|...+.+|  ++.+++|+.|++++|... .+|.....+..|.  +..+++|+.|++++|+++.++ 
T Consensus       260 ~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~--l~~~~~L~~L~L~~N~l~~l~-  334 (457)
T 3bz5_A          260 HCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD--LSQNPKLVYLYLNNTELTELD-  334 (457)
T ss_dssp             ECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCCEEECTTCCCSCCC-
T ss_pred             eccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec--hhhcccCCEEECCCCcccccc-
Confidence                 33444444444444444  345556666666665432 3443332333222  334456666666666665553 


Q ss_pred             cccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695          313 SITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF  375 (635)
Q Consensus       313 ~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~  375 (635)
                       +..+++|+.|++++|++.+ +    ++|..|++++|...+.     ..+..|..++++.|.+
T Consensus       335 -l~~l~~L~~L~l~~N~l~~-l----~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l  386 (457)
T 3bz5_A          335 -VSHNTKLKSLSCVNAHIQD-F----SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSL  386 (457)
T ss_dssp             -CTTCTTCSEEECCSSCCCB-C----TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBE
T ss_pred             -cccCCcCcEEECCCCCCCC-c----cccccccccCCcEEec-----ceeeecCccccccCcE
Confidence             5566666666666655443 2    3444555554433221     2333444455555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=1.1e-29  Score=270.72  Aligned_cols=304  Identities=14%  Similarity=0.105  Sum_probs=233.9

Q ss_pred             CCCCCcEEEeecCCCCCCcccceeeecCCc-ccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccccc-c
Q 006695           20 NMPNLRFLKFYMPEHNGVPIMISKVHLDQG-LEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIWE-G   95 (635)
Q Consensus        20 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~-l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~-~   95 (635)
                      .+++|+.|++++|.++         .+|.. +..+++ |++|++++|.+..+|.. | .+++|++|++++|.++.++. .
T Consensus        43 ~l~~l~~l~l~~~~l~---------~l~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  112 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR---------KLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV  112 (390)
T ss_dssp             GGCCCSEEEEESCEES---------EECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             ccCCceEEEecCCchh---------hCChhHhccccc-CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH
Confidence            3578888888887766         44444 344444 88888888888887763 5 68888888888888887754 4


Q ss_pred             CCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcE
Q 006695           96 KKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK  174 (635)
Q Consensus        96 ~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~  174 (635)
                      +..+++|++|+|++|.+....+. ++.+++|++|++++|......+..++.+++|+.|++++|... .++ ...+++|+.
T Consensus       113 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~-~~~l~~L~~  190 (390)
T 3o6n_A          113 FQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD-LSLIPSLFH  190 (390)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC-GGGCTTCSE
T ss_pred             hcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc-cccccccce
Confidence            68888888888888876543334 678888888888888776666667888888888888886533 332 235678888


Q ss_pred             EecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcc
Q 006695          175 IDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERF  254 (635)
Q Consensus       175 L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~  254 (635)
                      |+++++ .++.++ ...+|++|++++|.++.+|...  .++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..
T Consensus       191 L~l~~n-~l~~~~-~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~  264 (390)
T 3o6n_A          191 ANVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM  264 (390)
T ss_dssp             EECCSS-CCSEEE-CCSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE
T ss_pred             eecccc-cccccC-CCCcceEEECCCCeeeeccccc--cccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC
Confidence            888875 344332 3457899999999998887643  57899999999988764  46788999999999999888888


Q ss_pred             hhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcC
Q 006695          255 PEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSL  334 (635)
Q Consensus       255 ~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~l  334 (635)
                      |..+..+++|+.|++++|.++.+|..+          ..+++|+.|+|++|++..+|..+..+++|++|++++|++...-
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~  334 (390)
T 3o6n_A          265 YHPFVKMQRLERLYISNNRLVALNLYG----------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK  334 (390)
T ss_dssp             SGGGTTCSSCCEEECCSSCCCEEECSS----------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred             hhHccccccCCEEECCCCcCcccCccc----------CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC
Confidence            888999999999999999998876543          4468899999999999999988888999999999998875543


Q ss_pred             CCCCCccceeccccccc
Q 006695          335 PELPQSLELLDAENCKQ  351 (635)
Q Consensus       335 p~l~~sL~~L~l~~c~~  351 (635)
                      ...+++|+.|++++|+.
T Consensus       335 ~~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          335 LSTHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CCTTCCCSEEECCSSCE
T ss_pred             chhhccCCEEEcCCCCc
Confidence            44567788888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.97  E-value=1.5e-29  Score=286.23  Aligned_cols=356  Identities=18%  Similarity=0.187  Sum_probs=237.6

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecC-CcccCCCccceEeecCCCCCCCCCCC-C-CCCC
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLD-QGLEYLPNELRYLHWHEYPSKALPFD-F-EPEN   78 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~   78 (635)
                      .|||++|++..+.+.+|.++++|++|+|++|.++         .++ ..+..+++ |++|++++|.++.+|.. | ++++
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~---------~i~~~~f~~L~~-L~~L~Ls~N~l~~l~~~~f~~L~~  125 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ---------TIEDGAYQSLSH-LSTLILTGNPIQSLALGAFSGLSS  125 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC---------EECTTTTTTCTT-CCEEECTTCCCCEECGGGGTTCTT
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC---------CcChhHhcCCCC-CCEEEccCCcCCCCCHHHhcCCCC
Confidence            6999999999999999999999999999999988         444 44666765 99999999999999976 5 7999


Q ss_pred             ceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCC-CCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCC------
Q 006695           79 LVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLI-RMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHL------  149 (635)
Q Consensus        79 L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~-~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L------  149 (635)
                      |++|++++|+++.++.. ++++++|++|+|++|.+.. ..|. ++.+++|++|++++|...+..+..+..+.++      
T Consensus       126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~  205 (635)
T 4g8a_A          126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  205 (635)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred             CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhh
Confidence            99999999999999764 7999999999999998754 3453 7889999999999986655444433322211      


Q ss_pred             ---------------------CEEeecCCCCC------------------------------Cc----------------
Q 006695          150 ---------------------SMLCFEGCKSL------------------------------RS----------------  162 (635)
Q Consensus       150 ---------------------~~L~L~~~~~l------------------------------~~----------------  162 (635)
                                           +.+++.+|...                              ..                
T Consensus       206 ~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~  285 (635)
T 4g8a_A          206 LDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE  285 (635)
T ss_dssp             EECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEE
T ss_pred             hhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhh
Confidence                                 11222211000                              00                


Q ss_pred             -----------------------------------cCCCCCCCCCcEEecCCCCCCC--------------------ccC
Q 006695          163 -----------------------------------FPSNLHFMSPIKIDFSSCFNLT--------------------EFP  187 (635)
Q Consensus       163 -----------------------------------lp~~~~l~~L~~L~l~~c~~l~--------------------~~p  187 (635)
                                                         ++......+++.|++.+|..-.                    ..+
T Consensus       286 l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~  365 (635)
T 4g8a_A          286 FRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF  365 (635)
T ss_dssp             EEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBC
T ss_pred             hhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCc
Confidence                                               0000012234444444431100                    000


Q ss_pred             --cccCCcceEEeccccccc--------------------------cCcccccCCCccEEEeecccccccch-hcccCCC
Q 006695          188 --QISGNITDLILSETAIQE--------------------------VPSSIECLTNLEKLYINRCMRLKRLS-TSICKLK  238 (635)
Q Consensus       188 --~~~~~L~~L~L~~n~i~~--------------------------lp~~~~~l~~L~~L~L~~n~~~~~lp-~~~~~l~  238 (635)
                        ..+++|+.|++++|.+..                          ++..+..+++|+.+++.+|......+ ..+..++
T Consensus       366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence              112466777777766543                          23334445555555555544443332 3345566


Q ss_pred             CCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccc--cCchhcccccchhhccCCCCccEEEcCCCCCCccc-cccc
Q 006695          239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE--LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASIT  315 (635)
Q Consensus       239 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~  315 (635)
                      +++.++++.|.+....+..+..+++|+.|++++|.+..  +|.          .+..+++|+.|+|++|+++.++ ..+.
T Consensus       446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~----------~~~~l~~L~~L~Ls~N~L~~l~~~~f~  515 (635)
T 4g8a_A          446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD----------IFTELRNLTFLDLSQCQLEQLSPTAFN  515 (635)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS----------CCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ccccccccccccccccccccccchhhhhhhhhhcccccccCch----------hhhhccccCEEECCCCccCCcChHHHc
Confidence            66666666666666666666666666667666665332  233          2345678888888888887774 4578


Q ss_pred             CCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCccccCc-cccchhhhhhhhhcc
Q 006695          316 QLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILSGL-EEVDASVLEKATFLN  377 (635)
Q Consensus       316 ~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~~L-~~L~~l~L~~n~~~~  377 (635)
                      ++++|++|+|++|++.+..|.   .+++|++|++++|......|..+..+ ++|+.++|++|++.|
T Consensus       516 ~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          516 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            888888888888776555444   24688888888888777777777777 578888888887755

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=3.3e-29  Score=262.57  Aligned_cols=304  Identities=17%  Similarity=0.228  Sum_probs=163.1

Q ss_pred             hhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccC
Q 006695           17 AFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGK   96 (635)
Q Consensus        17 ~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~   96 (635)
                      .+..+++|+.|+++++.+..         ++ ++..+++ |++|++++|.+..+|....+++|++|++++|.++.++ .+
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~---------~~-~~~~~~~-L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~  106 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS---------IQ-GIEYLTN-LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-AL  106 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC---------CT-TGGGCTT-CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GG
T ss_pred             cchhcccccEEEEeCCcccc---------ch-hhhhcCC-ccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HH
Confidence            34556667777777666552         21 2444443 6666666666666665225666666666666666653 46


Q ss_pred             CCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEe
Q 006695           97 KRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKID  176 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~  176 (635)
                      ..+++|++|++++|.+. .++.+..+++|+.|++++|.....++ .+..+++|+.|++++|... .++....++      
T Consensus       107 ~~l~~L~~L~l~~n~i~-~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~-~~~~~~~l~------  177 (347)
T 4fmz_A          107 QNLTNLRELYLNEDNIS-DISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK-DVTPIANLT------  177 (347)
T ss_dssp             TTCTTCSEEECTTSCCC-CCGGGTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC-CCGGGGGCT------
T ss_pred             cCCCcCCEEECcCCccc-CchhhccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC-CchhhccCC------
Confidence            66666666666666643 33346666666666666665444433 3666666666666665422 222222344      


Q ss_pred             cCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh
Q 006695          177 FSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE  256 (635)
Q Consensus       177 l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~  256 (635)
                                     +|++|++++|.++.++. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+..+ 
T Consensus       178 ---------------~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          178 ---------------DLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             ---------------TCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ---------------CCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence                           45555555555555444 4555555555555555443332  4455555555555555443322 


Q ss_pred             hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695          257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE  336 (635)
Q Consensus       257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~  336 (635)
                       +..+++|++|++++|.++.++.           +..+++|+.|++++|.++.++ .+..+++|++|++++|++.+..|.
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~  305 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDINA-----------VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDME  305 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred             -hhcCCCCCEEECCCCccCCChh-----------HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChh
Confidence             5555555555555555554421           133455555555555555553 355555555555555555444333


Q ss_pred             ---CCCccceecccccccccccCccccCccccchhhhhhhhh
Q 006695          337 ---LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATF  375 (635)
Q Consensus       337 ---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~  375 (635)
                         .+++|+.|++++|+.....|  +..+++|+.+++++|++
T Consensus       306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i  345 (347)
T 4fmz_A          306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI  345 (347)
T ss_dssp             HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred             HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence               23455555555555433333  45555555555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6.7e-29  Score=260.24  Aligned_cols=295  Identities=16%  Similarity=0.162  Sum_probs=208.4

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      .|+++++.+..++  +|..+++|++|++++|.++.++         . +..+++ |++|++++|.+..+|....+++|++
T Consensus        48 ~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~---------~-~~~l~~-L~~L~L~~n~i~~~~~~~~l~~L~~  114 (347)
T 4fmz_A           48 KLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDIS---------P-LSNLVK-LTNLYIGTNKITDISALQNLTNLRE  114 (347)
T ss_dssp             EEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCG---------G-GTTCTT-CCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             EEEEeCCccccch--hhhhcCCccEEEccCCccccch---------h-hhcCCc-CCEEEccCCcccCchHHcCCCcCCE
Confidence            5899999988874  4999999999999999988433         2 555655 9999999999999886458999999


Q ss_pred             EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695           82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR  161 (635)
Q Consensus        82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~  161 (635)
                      |++++|.+..++. +..+++|+.|++++|.....++.+..+++|++|++++|......+  +..+++|+.|++++|.. .
T Consensus       115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l-~  190 (347)
T 4fmz_A          115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI-E  190 (347)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC-C
T ss_pred             EECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc-c
Confidence            9999999999876 889999999999999888888889999999999999996554433  88999999999999753 3


Q ss_pred             ccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCc
Q 006695          162 SFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLH  241 (635)
Q Consensus       162 ~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~  241 (635)
                      .++....+++                     |+.|++++|.++.++. +..+++|++|++++|.+.+..+  +..+++|+
T Consensus       191 ~~~~~~~l~~---------------------L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~  246 (347)
T 4fmz_A          191 DISPLASLTS---------------------LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLT  246 (347)
T ss_dssp             CCGGGGGCTT---------------------CCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             ccccccCCCc---------------------cceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCC
Confidence            3333223444                     4555555555555544 5566666666666665544333  55666666


Q ss_pred             EEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCc
Q 006695          242 VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQL  320 (635)
Q Consensus       242 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L  320 (635)
                      +|++++|.+.+.  ..+..+++|+.|++++|.++.++.           +..+++|+.|++++|.+...+ ..+..+++|
T Consensus       247 ~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~~-----------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  313 (347)
T 4fmz_A          247 WLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDISV-----------LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL  313 (347)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCGG-----------GGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred             EEECCCCccCCC--hhHhcCCCcCEEEccCCccCCChh-----------hcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence            666666655442  345666666666666666665532           233466666666666665443 345666666


Q ss_pred             cEEeccCCCCCCcCC-CCCCccceecccccc
Q 006695          321 RSLHLKDCSMLSSLP-ELPQSLELLDAENCK  350 (635)
Q Consensus       321 ~~L~L~~n~~l~~lp-~l~~sL~~L~l~~c~  350 (635)
                      ++|++++|++.+..| ..+++|+.|++++|+
T Consensus       314 ~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          314 TTLFLSQNHITDIRPLASLSKMDSADFANQV  344 (347)
T ss_dssp             SEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred             CEEEccCCccccccChhhhhccceeehhhhc
Confidence            666666666555444 234566666666665

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=4e-29  Score=273.66  Aligned_cols=312  Identities=16%  Similarity=0.175  Sum_probs=218.6

Q ss_pred             cEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc-cccCCCCCC
Q 006695           25 RFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI-WEGKKRAFK  101 (635)
Q Consensus        25 ~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-~~~~~~l~~  101 (635)
                      +.++.+++.++         .+|.++   +.+++.|++++|.+..++.. | .+++|++|+|++|.++.+ |..+.++++
T Consensus        14 ~~v~c~~~~l~---------~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~   81 (477)
T 2id5_A           14 RAVLCHRKRFV---------AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN   81 (477)
T ss_dssp             TEEECCSCCCS---------SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             CEEEeCCCCcC---------cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence            45666665555         333332   34578888888887777543 4 677888888888887766 566777888


Q ss_pred             CcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCC
Q 006695          102 LKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC  180 (635)
Q Consensus       102 L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c  180 (635)
                      |++|+|++|.+....+. +.++++|++|+|++|......+..+..+++|+.|++++|......+..+             
T Consensus        82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------  148 (477)
T 2id5_A           82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-------------  148 (477)
T ss_dssp             CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-------------
T ss_pred             CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc-------------
Confidence            88888888775543333 6777888888888877666667777777888888887765433323222             


Q ss_pred             CCCCccCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695          181 FNLTEFPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE  259 (635)
Q Consensus       181 ~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~  259 (635)
                             ..+++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.++....
T Consensus       149 -------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  221 (477)
T 2id5_A          149 -------SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL  221 (477)
T ss_dssp             -------TTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT
T ss_pred             -------cCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc
Confidence                   1124566777777777777643 77778888888888877777677777788888888888877777776666


Q ss_pred             CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEeccCCCCCCcCCCC-
Q 006695          260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCSMLSSLPEL-  337 (635)
Q Consensus       260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~l-  337 (635)
                      ...+|+.|++++|.++.+|..         .+..+++|+.|+|++|.++.++. .+..+++|++|+|++|++.+..|.. 
T Consensus       222 ~~~~L~~L~l~~n~l~~~~~~---------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  292 (477)
T 2id5_A          222 YGLNLTSLSITHCNLTAVPYL---------AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF  292 (477)
T ss_dssp             TTCCCSEEEEESSCCCSCCHH---------HHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTB
T ss_pred             cCccccEEECcCCcccccCHH---------HhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHh
Confidence            666788888888888877742         23455778888888888777764 3677888888888887776665543 


Q ss_pred             --CCccceecccccccccccCccccCccccchhhhhhhhhcc
Q 006695          338 --PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLN  377 (635)
Q Consensus       338 --~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~  377 (635)
                        .++|+.|++++|......+..+..+++|+.+++++|++.+
T Consensus       293 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          293 RGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             TTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             cCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence              3678888888886655555567788888888888887754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.3e-29  Score=275.65  Aligned_cols=292  Identities=20%  Similarity=0.208  Sum_probs=148.0

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCc
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENL   79 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L   79 (635)
                      .|||++|++..+.+.+|.++++|++|+|++|.+++        ..+..+..+++ |++|++++|.+..+|.. | .+++|
T Consensus        36 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~--------~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L  106 (477)
T 2id5_A           36 LLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--------VEPGAFNNLFN-LRTLGLRSNRLKLIPLGVFTGLSNL  106 (477)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE--------ECTTTTTTCTT-CCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred             EEECCCCccceECHhHccCCCCCCEEECCCCccCE--------eChhhhhCCcc-CCEEECCCCcCCccCcccccCCCCC
Confidence            35556665555555556666666666666555541        11344444443 66666666665555554 3 45566


Q ss_pred             eEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695           80 VKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC  157 (635)
Q Consensus        80 ~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~  157 (635)
                      ++|+|++|++..+ +..+..+++|+.|+|++|.+....+ .+.++++|++|++++|......+..+..+++|+.|++++|
T Consensus       107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            6666666655544 2344555566666666655444333 3555556666666655443333334555556666666555


Q ss_pred             CCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccC
Q 006695          158 KSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICK  236 (635)
Q Consensus       158 ~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~  236 (635)
                      ......+..+ .+++|+.|++++|..+..+                    |.......+|+.|++++|.+.+..+..+..
T Consensus       187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------------~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  246 (477)
T 2id5_A          187 NINAIRDYSFKRLYRLKVLEISHWPYLDTM--------------------TPNCLYGLNLTSLSITHCNLTAVPYLAVRH  246 (477)
T ss_dssp             CCCEECTTCSCSCTTCCEEEEECCTTCCEE--------------------CTTTTTTCCCSEEEEESSCCCSCCHHHHTT
T ss_pred             cCcEeChhhcccCcccceeeCCCCcccccc--------------------CcccccCccccEEECcCCcccccCHHHhcC
Confidence            4333222222 4455555555555444444                    333333335555555555444333334445


Q ss_pred             CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-cc
Q 006695          237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-IT  315 (635)
Q Consensus       237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~  315 (635)
                      +++|+.|+|++|.+.+..+..+..+++|+.|++++|.++.++..         .+..+++|+.|+|++|.++.+|.. +.
T Consensus       247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~  317 (477)
T 2id5_A          247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY---------AFRGLNYLRVLNVSGNQLTTLEESVFH  317 (477)
T ss_dssp             CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT---------TBTTCTTCCEEECCSSCCSCCCGGGBS
T ss_pred             ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH---------HhcCcccCCEEECCCCcCceeCHhHcC
Confidence            55555555555554444444455555555555555555543211         123345555555555555555432 35


Q ss_pred             CCCCccEEeccCCCCC
Q 006695          316 QLSQLRSLHLKDCSML  331 (635)
Q Consensus       316 ~l~~L~~L~L~~n~~l  331 (635)
                      .+++|++|+|++|++.
T Consensus       318 ~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          318 SVGNLETLILDSNPLA  333 (477)
T ss_dssp             CGGGCCEEECCSSCEE
T ss_pred             CCcccCEEEccCCCcc
Confidence            5555566666555543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=5.6e-29  Score=280.16  Aligned_cols=304  Identities=14%  Similarity=0.108  Sum_probs=218.4

Q ss_pred             CCCCcEEEeecCCCCCCcccceeeecCCcc-cCCCccceEeecCCCCCCCCCC-CC-CCCCceEEEcCCCCCcccccc-C
Q 006695           21 MPNLRFLKFYMPEHNGVPIMISKVHLDQGL-EYLPNELRYLHWHEYPSKALPF-DF-EPENLVKLNLPYSKVVQIWEG-K   96 (635)
Q Consensus        21 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l-~~l~~~L~~L~l~~~~l~~lp~-~~-~l~~L~~L~L~~n~l~~l~~~-~   96 (635)
                      +.+++.|++++|.++         .+|..+ ..+++ |++|++++|.+..+|. .| .+++|++|+|++|.++.++.. +
T Consensus        50 l~~l~~l~l~~~~l~---------~lp~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  119 (597)
T 3oja_B           50 LNNQKIVTFKNSTMR---------KLPAALLDSFRQ-VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF  119 (597)
T ss_dssp             GCCCSEEEESSCEES---------EECTHHHHHCCC-CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCCceEEEeeCCCCC---------CcCHHHHccCCC-CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH
Confidence            466777777776655         334332 33333 7777777777777665 34 577777777777777766543 4


Q ss_pred             CCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695           97 KRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI  175 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L  175 (635)
                      ..+++|++|+|++|.+....+. |+.+++|++|+|++|...+..|..++.+++|+.|++++|.. ..++ ...+++|+.|
T Consensus       120 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~-~~~l~~L~~L  197 (597)
T 3oja_B          120 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL-THVD-LSLIPSLFHA  197 (597)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCC-SBCC-GGGCTTCSEE
T ss_pred             cCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCC-CCcC-hhhhhhhhhh
Confidence            6777777777777765543333 56777777777777766666666677777777777777653 3332 2246677777


Q ss_pred             ecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch
Q 006695          176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP  255 (635)
Q Consensus       176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~  255 (635)
                      +++++ .+..++ .+.+|+.|++++|.++.+|..+  .++|+.|+|++|.+.+  +..+..+++|+.|+|++|.+.+..|
T Consensus       198 ~l~~n-~l~~l~-~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~  271 (597)
T 3oja_B          198 NVSYN-LLSTLA-IPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMY  271 (597)
T ss_dssp             ECCSS-CCSEEE-CCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEES
T ss_pred             hcccC-cccccc-CCchhheeeccCCccccccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCH
Confidence            77765 333332 3457888888888888877654  3688888998888776  3567888889999999988888888


Q ss_pred             hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCC
Q 006695          256 EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       256 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp  335 (635)
                      ..+..+++|+.|+|++|.++.+|..+          ..+++|+.|+|++|.+..+|..+..+++|+.|+|++|++.+.-+
T Consensus       272 ~~~~~l~~L~~L~Ls~N~l~~l~~~~----------~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~  341 (597)
T 3oja_B          272 HPFVKMQRLERLYISNNRLVALNLYG----------QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL  341 (597)
T ss_dssp             GGGTTCSSCCEEECTTSCCCEEECSS----------SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC
T ss_pred             HHhcCccCCCEEECCCCCCCCCCccc----------ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh
Confidence            88888899999999999888876543          34578899999999988888888888899999999888766544


Q ss_pred             CCCCccceecccccccc
Q 006695          336 ELPQSLELLDAENCKQL  352 (635)
Q Consensus       336 ~l~~sL~~L~l~~c~~l  352 (635)
                      ..+++|+.|++++|+..
T Consensus       342 ~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          342 STHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             CTTCCCSEEECCSSCEE
T ss_pred             hhcCCCCEEEeeCCCCC
Confidence            56678888888888753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.97  E-value=1.1e-28  Score=269.52  Aligned_cols=315  Identities=16%  Similarity=0.176  Sum_probs=265.2

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      +||+++|.+..+.+  |.++++|++|++++|.+++++         . +..+++ |++|++++|.+..+|....+++|++
T Consensus        72 ~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~---------~-~~~l~~-L~~L~L~~n~l~~~~~~~~l~~L~~  138 (466)
T 1o6v_A           72 QINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT---------P-LANLTN-LTGLTLFNNQITDIDPLKNLTNLNR  138 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG---------G-GTTCTT-CCEEECCSSCCCCCGGGTTCTTCSE
T ss_pred             EEECCCCccCCchh--hhccccCCEEECCCCccccCh---------h-hcCCCC-CCEEECCCCCCCCChHHcCCCCCCE
Confidence            68999999988865  999999999999999988432         2 556655 9999999999999987458999999


Q ss_pred             EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC
Q 006695           82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR  161 (635)
Q Consensus        82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~  161 (635)
                      |++++|.+..++ .+..+++|+.|++++ . ....+.+..+++|+.|++++|... .+ ..+..+++|+.|++++|....
T Consensus       139 L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~l~~n~l~~  213 (466)
T 1o6v_A          139 LELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKPLANLTTLERLDISSNKVS-DI-SVLAKLTNLESLIATNNQISD  213 (466)
T ss_dssp             EEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGGGTTCTTCCEEECCSSCCC-CC-GGGGGCTTCSEEECCSSCCCC
T ss_pred             EECCCCccCCCh-hhccCCcccEeecCC-c-ccCchhhccCCCCCEEECcCCcCC-CC-hhhccCCCCCEEEecCCcccc
Confidence            999999999886 488999999999974 3 344556999999999999999644 34 358899999999999987554


Q ss_pred             ccCCCCCCCCCcEEecCCCCCCCccCc--ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCC
Q 006695          162 SFPSNLHFMSPIKIDFSSCFNLTEFPQ--ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKS  239 (635)
Q Consensus       162 ~lp~~~~l~~L~~L~l~~c~~l~~~p~--~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~  239 (635)
                      ..| ...+++|+.|++++|. ++.++.  .+++|++|++++|.++.++. +..+++|+.|++++|.+.+..+  +..+++
T Consensus       214 ~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~  288 (466)
T 1o6v_A          214 ITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTA  288 (466)
T ss_dssp             CGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             ccc-ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence            433 4478999999999974 444442  34789999999999999876 8999999999999999876554  889999


Q ss_pred             CcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCC
Q 006695          240 LHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQ  319 (635)
Q Consensus       240 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~  319 (635)
                      |+.|++++|.+.+..+  +..+++|+.|++++|.++.++. +          ..+++|+.|++++|.+..++ .+..+++
T Consensus       289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~----------~~l~~L~~L~l~~n~l~~~~-~l~~l~~  354 (466)
T 1o6v_A          289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-V----------SSLTKLQRLFFYNNKVSDVS-SLANLTN  354 (466)
T ss_dssp             CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-G----------GGCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred             cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-h----------ccCccCCEeECCCCccCCch-hhccCCC
Confidence            9999999998877544  7899999999999999998754 2          45689999999999999885 7899999


Q ss_pred             ccEEeccCCCCCCcCCC-CCCccceeccccccccc
Q 006695          320 LRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQ  353 (635)
Q Consensus       320 L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~  353 (635)
                      |+.|++++|++.+..|- .+++|+.|++++|+...
T Consensus       355 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          355 INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred             CCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence            99999999998877663 35899999999998655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.96  E-value=8.7e-28  Score=260.90  Aligned_cols=315  Identities=19%  Similarity=0.206  Sum_probs=202.4

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCccccee---eec----CCcccCCCccceEeecCCCCCCCCCCCC
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISK---VHL----DQGLEYLPNELRYLHWHEYPSKALPFDF   74 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~---~~l----~~~l~~l~~~L~~L~l~~~~l~~lp~~~   74 (635)
                      .||+++|.+..++.    -.++|+.|++++|.++++|.....   +.+    ..++...+.+|++|++++|.++.+|...
T Consensus        75 ~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~  150 (454)
T 1jl5_A           75 ELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQ  150 (454)
T ss_dssp             EEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCT
T ss_pred             EEEecCCccccCCC----CcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccC
Confidence            46777776666543    135677777777766644421110   000    0112223345777888777777777423


Q ss_pred             CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      .+++|++|++++|+++.+|...   .+|++|++++|++.. +|+++++++|+.|++++|... .+|...   ++|+.|++
T Consensus       151 ~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~-~l~~~~---~~L~~L~l  222 (454)
T 1jl5_A          151 NSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVA  222 (454)
T ss_dssp             TCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-SCCCCC---TTCCEEEC
T ss_pred             CCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCC-cCCCCc---CcccEEEC
Confidence            6777888888888777776543   477788888776544 667777888888888877543 344322   47888888


Q ss_pred             cCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcc
Q 006695          155 EGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSI  234 (635)
Q Consensus       155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~  234 (635)
                      ++|. ++.+|....+++|+.|++++| .++.+|..+.+|++|++++|.++++|..   +++|+.|++++|.+.+ +|.  
T Consensus       223 ~~n~-l~~lp~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~l~~~---~~~L~~L~ls~N~l~~-l~~--  294 (454)
T 1jl5_A          223 GNNI-LEELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVSENIFSG-LSE--  294 (454)
T ss_dssp             CSSC-CSSCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSE-ESC--
T ss_pred             cCCc-CCcccccCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccccCcc---cCcCCEEECcCCccCc-ccC--
Confidence            7764 446776447788888888875 4556777777888888888888887764   3778888888887665 221  


Q ss_pred             cCCCCCcEEecCCCCCCCcchhhhcCC-CCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc
Q 006695          235 CKLKSLHVLVLDDCSKLERFPEILEKM-ESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS  313 (635)
Q Consensus       235 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~  313 (635)
                       -.++|+.|++++|.+.+ ++    .+ ++|+.|++++|+++.+|..             +++|+.|++++|+++.+|. 
T Consensus       295 -~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~-------------~~~L~~L~L~~N~l~~lp~-  354 (454)
T 1jl5_A          295 -LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPAL-------------PPRLERLIASFNHLAEVPE-  354 (454)
T ss_dssp             -CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCCC-------------CTTCCEEECCSSCCSCCCC-
T ss_pred             -cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccccccc-------------CCcCCEEECCCCccccccc-
Confidence             12578888888887654 22    23 5889999999988887753             3789999999999999997 


Q ss_pred             ccCCCCccEEeccCCCCCC--cCCCC----------------CCccceeccccccccc--ccCcc
Q 006695          314 ITQLSQLRSLHLKDCSMLS--SLPEL----------------PQSLELLDAENCKQLQ--FIPEI  358 (635)
Q Consensus       314 l~~l~~L~~L~L~~n~~l~--~lp~l----------------~~sL~~L~l~~c~~l~--~~~~~  358 (635)
                        .+++|++|++++|++.+  .+|..                +++|+.|++++|+..+  .+|..
T Consensus       355 --~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~s  417 (454)
T 1jl5_A          355 --LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES  417 (454)
T ss_dssp             --CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------------
T ss_pred             --hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhh
Confidence              57899999999998877  66643                2679999999998765  45543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=1.2e-28  Score=267.92  Aligned_cols=308  Identities=17%  Similarity=0.120  Sum_probs=200.6

Q ss_pred             cChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccc
Q 006695           13 LSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQI   92 (635)
Q Consensus        13 l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l   92 (635)
                      ..+..++++++|+.|++++|.+++         +| ++..+++ |++|++++|.+..+| ...+++|++|++++|+++.+
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~---------~~-~l~~l~~-L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~  100 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITD---------MT-GIEKLTG-LTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNL  100 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCC---------CT-TGGGCTT-CSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCC
T ss_pred             ccccChhHcCCCCEEEccCCCccc---------Ch-hhcccCC-CCEEEccCCcCCeEc-cccCCCCCEEECcCCCCcee
Confidence            344567778888888888887772         22 4555544 888888888887776 23677888888888888877


Q ss_pred             cccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCC
Q 006695           93 WEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSP  172 (635)
Q Consensus        93 ~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L  172 (635)
                      +  +..+++|++|++++|++.. +| ++.+++|++|++++|...+ +  .++.+++|+.|++++|..++.++ ...+   
T Consensus       101 ~--~~~l~~L~~L~L~~N~l~~-l~-~~~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~~-~~~l---  169 (457)
T 3bz5_A          101 D--VTPLTKLTYLNCDTNKLTK-LD-VSQNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKLD-VTPQ---  169 (457)
T ss_dssp             C--CTTCTTCCEEECCSSCCSC-CC-CTTCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCCC-CTTC---
T ss_pred             e--cCCCCcCCEEECCCCcCCe-ec-CCCCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCcccccc-cccC---
Confidence            4  7778888888888887554 44 7778888888888875444 3  26777777777777776555442 1133   


Q ss_pred             cEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC
Q 006695          173 IKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE  252 (635)
Q Consensus       173 ~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~  252 (635)
                                        ++|++|++++|.++.+|  ++.+++|+.|++++|.+.+.   .++.+++|+.|++++|.+.+
T Consensus       170 ------------------~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~  226 (457)
T 3bz5_A          170 ------------------TQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE  226 (457)
T ss_dssp             ------------------TTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC
T ss_pred             ------------------CcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc
Confidence                              45556666666666665  56666677777766666543   25666677777777766655


Q ss_pred             cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCC-CCcccccccCCCCccEEeccCCCCC
Q 006695          253 RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND-SESLPASITQLSQLRSLHLKDCSML  331 (635)
Q Consensus       253 ~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~-~~~lp~~l~~l~~L~~L~L~~n~~l  331 (635)
                       +|  +..+++|+.|++++|.++.+|  ++.+++|+.+.....+|+.|++++|. ++.+|  ++.+++|+.|++++|+.+
T Consensus       227 -ip--~~~l~~L~~L~l~~N~l~~~~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l  299 (457)
T 3bz5_A          227 -ID--VTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQL  299 (457)
T ss_dssp             -CC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTC
T ss_pred             -cC--ccccCCCCEEEeeCCcCCCcC--HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCccc
Confidence             34  566667777777777776665  33455555555555666666777766 34455  456777777777777777


Q ss_pred             CcCCCCCC-----------ccceecccccccccccCccccCccccchhhhhhhhhc
Q 006695          332 SSLPELPQ-----------SLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFL  376 (635)
Q Consensus       332 ~~lp~l~~-----------sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~  376 (635)
                      +.+|...+           +|+.|++++|.... +  .+..+++|+.+++++|++.
T Consensus       300 ~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~  352 (457)
T 3bz5_A          300 YLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQ  352 (457)
T ss_dssp             CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCC
T ss_pred             ceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCC
Confidence            76665333           44555555544333 2  2666677777777776654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.5e-27  Score=254.21  Aligned_cols=298  Identities=14%  Similarity=0.091  Sum_probs=245.7

Q ss_pred             cceEeecCCCCCCCCCCCC--CCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeec
Q 006695           56 ELRYLHWHEYPSKALPFDF--EPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLK  131 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~  131 (635)
                      ++++|++.++.++.+|..+  .+++|++|++++|.++.++. .+..+++|++|+|++|.+....|. ++++++|++|+++
T Consensus        46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  125 (390)
T 3o6n_A           46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  125 (390)
T ss_dssp             CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECC
Confidence            5999999999999999874  68999999999999998875 789999999999999997776665 8999999999999


Q ss_pred             CCCCCcccCcc-ccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc
Q 006695          132 NCINLTCVPSS-VQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS  209 (635)
Q Consensus       132 ~n~~l~~~~~~-i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~  209 (635)
                      +|... .+|.. ++.+++|++|++++|......+..+ .+++|+.|+++++..-..-...+++|+.|++++|.++.++  
T Consensus       126 ~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~--  202 (390)
T 3o6n_A          126 RNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA--  202 (390)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE--
T ss_pred             CCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC--
Confidence            99655 55554 6899999999999987655445444 7899999999997543333355689999999999988764  


Q ss_pred             cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc-Cchhcccccch
Q 006695          210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLK  288 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~  288 (635)
                        ..++|+.|++++|.+... |.  ...++|+.|++++|.+.+.  ..+..+++|++|++++|.++.+ |..+       
T Consensus       203 --~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~-------  268 (390)
T 3o6n_A          203 --IPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF-------  268 (390)
T ss_dssp             --CCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG-------
T ss_pred             --CCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc-------
Confidence              346899999999987654 33  2358999999999988764  5788999999999999999976 4443       


Q ss_pred             hhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC---CCCccceecccccccccccCccccCcccc
Q 006695          289 DLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENCKQLQFIPEILSGLEEV  365 (635)
Q Consensus       289 ~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c~~l~~~~~~~~~L~~L  365 (635)
                         ..+++|+.|+|++|+++.+|..+..+++|++|+|++|++. .+|.   .+++|+.|++++|+... ++  +..+++|
T Consensus       269 ---~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L  341 (390)
T 3o6n_A          269 ---VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTL  341 (390)
T ss_dssp             ---TTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCC
T ss_pred             ---cccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccC
Confidence               5568999999999999999988889999999999998765 5554   24799999999998543 33  6778888


Q ss_pred             chhhhhhhhhcc
Q 006695          366 DASVLEKATFLN  377 (635)
Q Consensus       366 ~~l~L~~n~~~~  377 (635)
                      +.+++++|++.+
T Consensus       342 ~~L~l~~N~~~~  353 (390)
T 3o6n_A          342 KNLTLSHNDWDC  353 (390)
T ss_dssp             SEEECCSSCEEH
T ss_pred             CEEEcCCCCccc
Confidence            888888887644

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=5.4e-27  Score=263.98  Aligned_cols=299  Identities=14%  Similarity=0.080  Sum_probs=247.3

Q ss_pred             cceEeecCCCCCCCCCCCC--CCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeec
Q 006695           56 ELRYLHWHEYPSKALPFDF--EPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLK  131 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~--~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~  131 (635)
                      +++.|++.++.+..+|..+  .+++|++|++++|.++.++. .+..+++|++|+|++|.+....|. ++++++|++|+|+
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  131 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE  131 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEee
Confidence            5999999999999999874  68999999999999998875 789999999999999997776664 7999999999999


Q ss_pred             CCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCccc
Q 006695          132 NCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSI  210 (635)
Q Consensus       132 ~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~  210 (635)
                      +|......+..++.+++|++|++++|......|..+ .+++|+.|++++|..-..-...+++|+.|++++|.++.++   
T Consensus       132 ~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~---  208 (597)
T 3oja_B          132 RNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA---  208 (597)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE---
T ss_pred             CCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc---
Confidence            996554444446999999999999987666555555 8899999999997543333355689999999999988653   


Q ss_pred             ccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc-Cchhcccccchh
Q 006695          211 ECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKD  289 (635)
Q Consensus       211 ~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~  289 (635)
                       ..++|+.|++++|.+....+. +  .++|+.|+|++|.+.+  +..+..+++|+.|++++|.++.+ |..+        
T Consensus       209 -~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--------  274 (597)
T 3oja_B          209 -IPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF--------  274 (597)
T ss_dssp             -CCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGG--------
T ss_pred             -CCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHh--------
Confidence             456899999999987654332 2  4689999999998877  36789999999999999999976 4444        


Q ss_pred             hccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccccCccccCccccc
Q 006695          290 LYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQFIPEILSGLEEVD  366 (635)
Q Consensus       290 l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~  366 (635)
                        ..+++|+.|+|++|.++.+|..+..+++|+.|+|++|++. .+|..   +++|+.|++++|.....   .+..+++|+
T Consensus       275 --~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~---~~~~~~~L~  348 (597)
T 3oja_B          275 --VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL---KLSTHHTLK  348 (597)
T ss_dssp             --TTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC---CCCTTCCCS
T ss_pred             --cCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc---ChhhcCCCC
Confidence              5568999999999999999988889999999999998776 56653   47999999999986543   367778888


Q ss_pred             hhhhhhhhhcc
Q 006695          367 ASVLEKATFLN  377 (635)
Q Consensus       367 ~l~L~~n~~~~  377 (635)
                      .+++++|++.+
T Consensus       349 ~L~l~~N~~~~  359 (597)
T 3oja_B          349 NLTLSHNDWDC  359 (597)
T ss_dssp             EEECCSSCEEH
T ss_pred             EEEeeCCCCCC
Confidence            88888887654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=3.3e-26  Score=238.15  Aligned_cols=277  Identities=15%  Similarity=0.149  Sum_probs=141.2

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCI  134 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~  134 (635)
                      ++.++++++.+..+|..+. ++|+.|++++|+++.++. .+..+++|++|+|++|.+....| .++.+++|++|++++|.
T Consensus        33 l~~l~~~~~~l~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ  111 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC
T ss_pred             CeEEEecCCCccccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc
Confidence            4444444444444444331 344444444444444433 34444444444444444433323 24444444444444442


Q ss_pred             CCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCC--ccC---cccCCcceEEeccccccccCc
Q 006695          135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLT--EFP---QISGNITDLILSETAIQEVPS  208 (635)
Q Consensus       135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~--~~p---~~~~~L~~L~L~~n~i~~lp~  208 (635)
                       ++.+|..+.  ++|+.|++++|......+..+ .+++|+.|+++++..-.  ..+   ..+++|++|++++|.++.+|.
T Consensus       112 -l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~  188 (330)
T 1xku_A          112 -LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ  188 (330)
T ss_dssp             -CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS
T ss_pred             -CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc
Confidence             223333322  344444444433221111111 34444444444432211  111   123456666666666666665


Q ss_pred             ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccch
Q 006695          209 SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLK  288 (635)
Q Consensus       209 ~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~  288 (635)
                      .+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+       
T Consensus       189 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l-------  259 (330)
T 1xku_A          189 GLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL-------  259 (330)
T ss_dssp             SCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT-------
T ss_pred             ccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh-------
Confidence            543  66777777777666666666666777777777776666655556666777777777777777666544       


Q ss_pred             hhccCCCCccEEEcCCCCCCccccc-cc------CCCCccEEeccCCCCCC-cCC-C---CCCccceeccccc
Q 006695          289 DLYIGGSSLRQLNLSRNDSESLPAS-IT------QLSQLRSLHLKDCSMLS-SLP-E---LPQSLELLDAENC  349 (635)
Q Consensus       289 ~l~~~~~~L~~L~Ls~n~~~~lp~~-l~------~l~~L~~L~L~~n~~l~-~lp-~---l~~sL~~L~l~~c  349 (635)
                         ..+++|++|++++|+++.+|.. +.      ....|+.|++++|+... .++ .   ...+++.+++++|
T Consensus       260 ---~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          260 ---ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             ---TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             ---ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence               3346677777777776666543 21      23566677777766542 122 1   2355666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=2.6e-26  Score=239.13  Aligned_cols=279  Identities=13%  Similarity=0.146  Sum_probs=150.7

Q ss_pred             CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc-cccCCCC
Q 006695           23 NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI-WEGKKRA   99 (635)
Q Consensus        23 ~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-~~~~~~l   99 (635)
                      +|+.++++++.++         .+|..+   +.+|++|++++|.+..++.. | .+++|++|++++|+++.+ |..+..+
T Consensus        34 ~l~~l~~~~~~l~---------~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  101 (332)
T 2ft3_A           34 HLRVVQCSDLGLK---------AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL  101 (332)
T ss_dssp             ETTEEECCSSCCS---------SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC
T ss_pred             cCCEEECCCCCcc---------ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc
Confidence            4666666666555         223322   12466666666666666542 3 566666666666666655 4556666


Q ss_pred             CCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCC--ccCCCCCCCCCcEEe
Q 006695          100 FKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLR--SFPSNLHFMSPIKID  176 (635)
Q Consensus       100 ~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~--~lp~~~~l~~L~~L~  176 (635)
                      ++|++|+|++|++. .+| .+.  ++|++|++++|......+..+..+++|+.|++++|....  ..+..+...      
T Consensus       102 ~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l------  172 (332)
T 2ft3_A          102 RKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL------  172 (332)
T ss_dssp             TTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC------
T ss_pred             CCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC------
Confidence            66666666666544 333 222  566666666664443333446666666666666654321  222222111      


Q ss_pred             cCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh
Q 006695          177 FSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE  256 (635)
Q Consensus       177 l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~  256 (635)
                                     +|++|++++|.++.+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus       173 ---------------~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  235 (332)
T 2ft3_A          173 ---------------KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG  235 (332)
T ss_dssp             ---------------CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT
T ss_pred             ---------------ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh
Confidence                           45555555666665555443  4566666666665555555566666666666666665555555


Q ss_pred             hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccC------CCCccEEeccCCC
Q 006695          257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQ------LSQLRSLHLKDCS  329 (635)
Q Consensus       257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~------l~~L~~L~L~~n~  329 (635)
                      .+..+++|+.|++++|.++.+|..+          ..+++|+.|++++|+++.+|.. +..      ..+|+.|++++|+
T Consensus       236 ~~~~l~~L~~L~L~~N~l~~lp~~l----------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          236 SLSFLPTLRELHLDNNKLSRVPAGL----------PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             GGGGCTTCCEEECCSSCCCBCCTTG----------GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred             HhhCCCCCCEEECCCCcCeecChhh----------hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCc
Confidence            5666666666666666666655543          2235566666666666555432 221      3456666666665


Q ss_pred             CC--CcCCC---CCCccceeccccc
Q 006695          330 ML--SSLPE---LPQSLELLDAENC  349 (635)
Q Consensus       330 ~l--~~lp~---l~~sL~~L~l~~c  349 (635)
                      ..  ...|.   ..++|+.|++++|
T Consensus       306 ~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          306 VPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccccccCcccccccchhhhhhcccc
Confidence            54  22222   2345566666555

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=2.2e-26  Score=239.68  Aligned_cols=277  Identities=16%  Similarity=0.171  Sum_probs=187.2

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCI  134 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~  134 (635)
                      ++.++++++.++.+|..+ .++|+.|++++|.++.++ ..+..+++|++|+|++|++....| .++++++|++|++++| 
T Consensus        35 l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-  112 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-  112 (332)
T ss_dssp             TTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-
T ss_pred             CCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-
Confidence            555555555555555443 235555555555555443 234555555555555554433333 2444555555555544 


Q ss_pred             CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccc---cC
Q 006695          135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQE---VP  207 (635)
Q Consensus       135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~---lp  207 (635)
                                             . ++.+|..+. ++|+.|+++++. ++.++.    .+++|++|++++|.++.   .|
T Consensus       113 -----------------------~-l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  166 (332)
T 2ft3_A          113 -----------------------H-LVEIPPNLP-SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP  166 (332)
T ss_dssp             -----------------------C-CCSCCSSCC-TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred             -----------------------c-CCccCcccc-ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence                                   2 223333332 445555554432 222221    23678888888888863   35


Q ss_pred             cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc
Q 006695          208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL  287 (635)
Q Consensus       208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L  287 (635)
                      ..+..+ +|+.|++++|.+.+ +|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.++.++..       
T Consensus       167 ~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-------  235 (332)
T 2ft3_A          167 GAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENG-------  235 (332)
T ss_dssp             TSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTT-------
T ss_pred             ccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChh-------
Confidence            567777 99999999998765 555443  7999999999999988888999999999999999999988652       


Q ss_pred             hhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---------CCccceecccccccc--cccC
Q 006695          288 KDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---------PQSLELLDAENCKQL--QFIP  356 (635)
Q Consensus       288 ~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---------~~sL~~L~l~~c~~l--~~~~  356 (635)
                        .+..+++|+.|+|++|+++.+|.++..+++|++|++++|++.+.-+..         .++|+.|++.+|+..  ...+
T Consensus       236 --~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~  313 (332)
T 2ft3_A          236 --SLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP  313 (332)
T ss_dssp             --GGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred             --HhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence              234568999999999999999999999999999999998876543321         357899999999876  5667


Q ss_pred             ccccCccccchhhhhhhh
Q 006695          357 EILSGLEEVDASVLEKAT  374 (635)
Q Consensus       357 ~~~~~L~~L~~l~L~~n~  374 (635)
                      ..+..+++|+.+++++|+
T Consensus       314 ~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          314 ATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             GGGTTBCCSTTEEC----
T ss_pred             ccccccchhhhhhccccc
Confidence            788889999888877763

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=6e-26  Score=236.20  Aligned_cols=281  Identities=13%  Similarity=0.106  Sum_probs=231.6

Q ss_pred             CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695           77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE  155 (635)
Q Consensus        77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~  155 (635)
                      .+|+.++++++.++.+|..+.  ++|+.|+|++|.+....+ .++++++|++|+|++|...+..|..++.+++|++|+++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            478999999999999998764  689999999999776655 59999999999999998777778999999999999999


Q ss_pred             CCCCCCccCCCCCCCCCcEEecCCCCCCCccC----cccCCcceEEeccccccc---cCcccccCCCccEEEeecccccc
Q 006695          156 GCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFP----QISGNITDLILSETAIQE---VPSSIECLTNLEKLYINRCMRLK  228 (635)
Q Consensus       156 ~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p----~~~~~L~~L~L~~n~i~~---lp~~~~~l~~L~~L~L~~n~~~~  228 (635)
                      +|. ++.+|..+. ++|+.|++++|. ++.++    ..+++|++|++++|.++.   .+..+..+++|++|++++|.+..
T Consensus       109 ~n~-l~~l~~~~~-~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~  185 (330)
T 1xku_A          109 KNQ-LKELPEKMP-KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  185 (330)
T ss_dssp             SSC-CSBCCSSCC-TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             CCc-CCccChhhc-ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence            876 557777654 899999999974 44443    234789999999999974   45678999999999999998764


Q ss_pred             cchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          229 RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       229 ~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                       +|..+.  ++|++|++++|.+.+..+..+..+++|+.|++++|.++.++..         .+..+++|++|+|++|.++
T Consensus       186 -l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~L~~N~l~  253 (330)
T 1xku_A          186 -IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG---------SLANTPHLRELHLNNNKLV  253 (330)
T ss_dssp             -CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT---------TGGGSTTCCEEECCSSCCS
T ss_pred             -CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChh---------hccCCCCCCEEECCCCcCc
Confidence             555443  8999999999998888889999999999999999999987642         1245689999999999999


Q ss_pred             cccccccCCCCccEEeccCCCCCCcCCCC---------CCccceeccccccccc--ccCccccCccccchhhhhhhh
Q 006695          309 SLPASITQLSQLRSLHLKDCSMLSSLPEL---------PQSLELLDAENCKQLQ--FIPEILSGLEEVDASVLEKAT  374 (635)
Q Consensus       309 ~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---------~~sL~~L~l~~c~~l~--~~~~~~~~L~~L~~l~L~~n~  374 (635)
                      .+|.++..+++|++|++++|++.+.-+..         .++|+.|++.+|+...  ..|..+..+.+++.++|++|+
T Consensus       254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            99999999999999999998876543322         2678999999998743  556788888889888888773

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=4.3e-26  Score=257.87  Aligned_cols=333  Identities=20%  Similarity=0.175  Sum_probs=247.6

Q ss_pred             CeeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCC-cccCCCccceEeecCCCCCCCCCCC-C-CCC
Q 006695            1 MFLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQ-GLEYLPNELRYLHWHEYPSKALPFD-F-EPE   77 (635)
Q Consensus         1 i~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~   77 (635)
                      .+|||++|++..+++++|.++++|++|+|++|+++         .++. .+..+++ |++|++++|.++.+|.. | .++
T Consensus        79 ~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~---------~l~~~~f~~L~~-L~~L~Ls~N~l~~l~~~~~~~L~  148 (635)
T 4g8a_A           79 QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ---------SLALGAFSGLSS-LQKLVAVETNLASLENFPIGHLK  148 (635)
T ss_dssp             CEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC---------EECGGGGTTCTT-CCEEECTTSCCCCSTTCCCTTCT
T ss_pred             CEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC---------CCCHHHhcCCCC-CCEEECCCCcCCCCChhhhhcCc
Confidence            37999999999999999999999999999999988         4443 4556655 99999999999999976 5 799


Q ss_pred             CceEEEcCCCCCcc--ccccCCCCCCCcEEEccCCCCCCCCC-CCCC---------------------------CCCCCE
Q 006695           78 NLVKLNLPYSKVVQ--IWEGKKRAFKLKYVDIHNSQYLIRMP-DLSE---------------------------TPNLER  127 (635)
Q Consensus        78 ~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~---------------------------l~~L~~  127 (635)
                      +|++|++++|.++.  +|..+..+++|++|+|++|++....+ ++..                           ...++.
T Consensus       149 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~  228 (635)
T 4g8a_A          149 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHK  228 (635)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhh
Confidence            99999999999985  46778899999999999998654322 1111                           112223


Q ss_pred             EeecCCCCCcc----------------------------------------------------------c----------
Q 006695          128 TNLKNCINLTC----------------------------------------------------------V----------  139 (635)
Q Consensus       128 L~L~~n~~l~~----------------------------------------------------------~----------  139 (635)
                      +++.+|.....                                                          +          
T Consensus       229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l  308 (635)
T 4g8a_A          229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV  308 (635)
T ss_dssp             EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred             hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence            33333210000                                                          0          


Q ss_pred             ------------CccccCCCCCCEEeecCCCCCC--------------------ccCCCCCCCCCcEEecCCCCCCCc--
Q 006695          140 ------------PSSVQNFNHLSMLCFEGCKSLR--------------------SFPSNLHFMSPIKIDFSSCFNLTE--  185 (635)
Q Consensus       140 ------------~~~i~~l~~L~~L~L~~~~~l~--------------------~lp~~~~l~~L~~L~l~~c~~l~~--  185 (635)
                                  ...+.....|+.|++.+|....                    ..+....+++|+.++++++.....  
T Consensus       309 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~  388 (635)
T 4g8a_A          309 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC  388 (635)
T ss_dssp             SEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEE
T ss_pred             ccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccc
Confidence                        0012233456666666553211                    112223567777777776532110  


Q ss_pred             -----------------------cC---cccCCcceEEeccccccccC--cccccCCCccEEEeecccccccchhcccCC
Q 006695          186 -----------------------FP---QISGNITDLILSETAIQEVP--SSIECLTNLEKLYINRCMRLKRLSTSICKL  237 (635)
Q Consensus       186 -----------------------~p---~~~~~L~~L~L~~n~i~~lp--~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l  237 (635)
                                             .+   ....+|+.+++..+......  ..+..+++++.++++.|.+....+..+..+
T Consensus       389 ~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~  468 (635)
T 4g8a_A          389 CSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL  468 (635)
T ss_dssp             CCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred             cccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccc
Confidence                                   01   12256778888877766553  347889999999999999999999999999


Q ss_pred             CCCcEEecCCCCCCC-cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-ccc
Q 006695          238 KSLHVLVLDDCSKLE-RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SIT  315 (635)
Q Consensus       238 ~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~  315 (635)
                      ++|+.|++++|...+ ..|..+..+++|++|+|++|+|+.++..         .+.++++|++|+|++|+++.++. .+.
T Consensus       469 ~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~---------~f~~l~~L~~L~Ls~N~l~~l~~~~~~  539 (635)
T 4g8a_A          469 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT---------AFNSLSSLQVLNMSHNNFFSLDTFPYK  539 (635)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT---------TTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred             hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChH---------HHcCCCCCCEEECCCCcCCCCChhHHh
Confidence            999999999998654 4678899999999999999999987542         23567899999999999999865 589


Q ss_pred             CCCCccEEeccCCCCCCcCCC----CCCccceecccccccc
Q 006695          316 QLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQL  352 (635)
Q Consensus       316 ~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l  352 (635)
                      ++++|++|+|++|++.+..|.    ++++|+.|++++|+..
T Consensus       540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            999999999999998887776    3478999999999753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.94  E-value=8.6e-27  Score=240.78  Aligned_cols=245  Identities=16%  Similarity=0.189  Sum_probs=170.1

Q ss_pred             CCceEEEcCCCCCc---cccccCCCCCCCcEEEccC-CCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCE
Q 006695           77 ENLVKLNLPYSKVV---QIWEGKKRAFKLKYVDIHN-SQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSM  151 (635)
Q Consensus        77 ~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~Ls~-n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~  151 (635)
                      .+++.|++++|.+.   .+|..+..+++|++|+|++ |.+...+| .++.+++|++|+|++|...+.+|..++.+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            57888888888887   4788888888888888884 77666667 4888888888888888777788888888888888


Q ss_pred             EeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccc-ccCcccccCC-CccEEEeeccccccc
Q 006695          152 LCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ-EVPSSIECLT-NLEKLYINRCMRLKR  229 (635)
Q Consensus       152 L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~-~lp~~~~~l~-~L~~L~L~~n~~~~~  229 (635)
                      |++++|.....+|..+                    ..+++|++|++++|.++ .+|..++.++ +|++|++++|.+.+.
T Consensus       130 L~Ls~N~l~~~~p~~~--------------------~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSI--------------------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             EECCSSEEESCCCGGG--------------------GGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             EeCCCCccCCcCChHH--------------------hcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence            8888766443444322                    11244555666666666 5666677776 777777777777767


Q ss_pred             chhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC-
Q 006695          230 LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE-  308 (635)
Q Consensus       230 lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~-  308 (635)
                      +|..+..++ |+.|++++|.+.+..|..+..+++|+.|++++|.++..+..+          ..+++|++|+|++|.+. 
T Consensus       190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~----------~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          190 IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----------GLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC----------CCCTTCCEEECCSSCCEE
T ss_pred             CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcc----------cccCCCCEEECcCCcccC
Confidence            777777666 777777777776667777777777777777777776443322          33467777777777765 


Q ss_pred             cccccccCCCCccEEeccCCCCCCcCCCC--CCccceecccccccc
Q 006695          309 SLPASITQLSQLRSLHLKDCSMLSSLPEL--PQSLELLDAENCKQL  352 (635)
Q Consensus       309 ~lp~~l~~l~~L~~L~L~~n~~l~~lp~l--~~sL~~L~l~~c~~l  352 (635)
                      .+|..+..+++|++|+|++|++.+.+|..  +++|+.|++.+|+.+
T Consensus       259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             cCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCc
Confidence            56666777777777777777666666653  345555666655543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=4.4e-26  Score=235.43  Aligned_cols=248  Identities=16%  Similarity=0.234  Sum_probs=213.4

Q ss_pred             CCCcEEEccCCCCCC--CCC-CCCCCCCCCEEeecC-CCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695          100 FKLKYVDIHNSQYLI--RMP-DLSETPNLERTNLKN-CINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI  175 (635)
Q Consensus       100 ~~L~~L~Ls~n~~~~--~~p-~l~~l~~L~~L~L~~-n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L  175 (635)
                      .+++.|+|++|.+..  .+| .++++++|++|++++ |...+.+|..++.+++|++|++++|.....+|..+        
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~--------  121 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL--------  121 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG--------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH--------
Confidence            589999999999876  666 589999999999995 77777889999999999999999887555555432        


Q ss_pred             ecCCCCCCCccCcccCCcceEEecccccc-ccCcccccCCCccEEEeecccccccchhcccCCC-CCcEEecCCCCCCCc
Q 006695          176 DFSSCFNLTEFPQISGNITDLILSETAIQ-EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK-SLHVLVLDDCSKLER  253 (635)
Q Consensus       176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~-~L~~L~Ls~n~~~~~  253 (635)
                                  ..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.+.
T Consensus       122 ------------~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~  189 (313)
T 1ogq_A          122 ------------SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK  189 (313)
T ss_dssp             ------------GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred             ------------hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc
Confidence                        12356777788888888 6788899999999999999999999999999998 999999999999989


Q ss_pred             chhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCc
Q 006695          254 FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSS  333 (635)
Q Consensus       254 ~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~  333 (635)
                      +|..+..++ |+.|++++|.++..+.         ..+..+++|+.|+|++|.++..+..+..+++|++|+|++|++.+.
T Consensus       190 ~~~~~~~l~-L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~  259 (313)
T 1ogq_A          190 IPPTFANLN-LAFVDLSRNMLEGDAS---------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT  259 (313)
T ss_dssp             CCGGGGGCC-CSEEECCSSEEEECCG---------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC
T ss_pred             CChHHhCCc-ccEEECcCCcccCcCC---------HHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc
Confidence            999999998 9999999999985432         234567899999999999987666789999999999999999888


Q ss_pred             CCCC---CCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695          334 LPEL---PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       334 lp~l---~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      +|..   +++|+.|++++|...+.+|.. ..+++|+.+++++|+.++.
T Consensus       260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            8874   479999999999988888876 8899999999999997765

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=4.3e-24  Score=239.27  Aligned_cols=263  Identities=19%  Similarity=0.196  Sum_probs=193.2

Q ss_pred             CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCC
Q 006695           22 PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFK  101 (635)
Q Consensus        22 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~  101 (635)
                      .+++.|++++|.++         .+|..+.   .+|++|++++|.++.+|.  .+++|++|+|++|+++.+|.   .+++
T Consensus        40 ~~l~~L~ls~n~L~---------~lp~~l~---~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~  102 (622)
T 3g06_A           40 NGNAVLNVGESGLT---------TLPDCLP---AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPG  102 (622)
T ss_dssp             HCCCEEECCSSCCS---------CCCSCCC---TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTT
T ss_pred             CCCcEEEecCCCcC---------ccChhhC---CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCC
Confidence            45788888888777         3344332   358888888888888887  56788888888888888776   6678


Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCC
Q 006695          102 LKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCF  181 (635)
Q Consensus       102 L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~  181 (635)
                      |++|+|++|.+.. +|.  .+++|+.|++++|. +..+|..   +++|++|++++|+ ++.+|.  ...+|+.|++++| 
T Consensus       103 L~~L~Ls~N~l~~-l~~--~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~-l~~l~~--~~~~L~~L~L~~N-  171 (622)
T 3g06_A          103 LLELSIFSNPLTH-LPA--LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQ-LASLPA--LPSELCKLWAYNN-  171 (622)
T ss_dssp             CCEEEECSCCCCC-CCC--CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS-
T ss_pred             CCEEECcCCcCCC-CCC--CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCc-CCCcCC--ccCCCCEEECCCC-
Confidence            8888888887443 444  56788888888874 4445543   4778888888764 445554  3467888888774 


Q ss_pred             CCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCC
Q 006695          182 NLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKM  261 (635)
Q Consensus       182 ~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l  261 (635)
                      .++.+|..+++|+.|++++|.++.+|..   +++|+.|++++|.+.. +|.   .+++|+.|++++|.+.+ +|   ..+
T Consensus       172 ~l~~l~~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l  240 (622)
T 3g06_A          172 QLTSLPMLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLP  240 (622)
T ss_dssp             CCSCCCCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred             CCCCCcccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCC
Confidence            5666776677888888888888887764   4678888888887653 443   34778888888876655 44   456


Q ss_pred             CCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC
Q 006695          262 ESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE  336 (635)
Q Consensus       262 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~  336 (635)
                      ++|+.|++++|.|+.+|.             .+++|+.|+|++|.++.+|..+.++++|+.|+|++|++.+..|.
T Consensus       241 ~~L~~L~Ls~N~L~~lp~-------------~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          241 SELKELMVSGNRLTSLPM-------------LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC-------------CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CcCcEEECCCCCCCcCCc-------------ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            788888888888888775             23678888888888888888888888888888888887766654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=7.8e-24  Score=237.17  Aligned_cols=257  Identities=21%  Similarity=0.213  Sum_probs=157.3

Q ss_pred             ccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCC
Q 006695           55 NELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCI  134 (635)
Q Consensus        55 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~  134 (635)
                      ++++.|+++++.++.+|..+. ++|++|++++|+++.+|.   .+++|++|+|++|++. .+|.  .+++|++|+|++|.
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSIFSNP  112 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEECSCC
T ss_pred             CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEECcCCc
Confidence            458999999999999998765 799999999999998887   5789999999999854 5665  77899999999884


Q ss_pred             CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCC
Q 006695          135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLT  214 (635)
Q Consensus       135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~  214 (635)
                       +..+|.   .+++|+.|++++|+ ++.+|..  +++|+.|++++| .++.+|..+++|+.|++++|.++.+|   ..++
T Consensus       113 -l~~l~~---~l~~L~~L~L~~N~-l~~lp~~--l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~---~~~~  181 (622)
T 3g06_A          113 -LTHLPA---LPSGLCKLWIFGNQ-LTSLPVL--PPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLP---MLPS  181 (622)
T ss_dssp             -CCCCCC---CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCC---CCCT
T ss_pred             -CCCCCC---CCCCcCEEECCCCC-CCcCCCC--CCCCCEEECcCC-cCCCcCCccCCCCEEECCCCCCCCCc---ccCC
Confidence             444554   56788888888765 4555553  366666666665 44555555566666666666666665   3345


Q ss_pred             CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695          215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG  294 (635)
Q Consensus       215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~  294 (635)
                      +|+.|++++|.+.+ +|.   .+++|+.|++++|.+.. +|.   .+++|+.|++++|.|+.+|..             +
T Consensus       182 ~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp~~-------------l  240 (622)
T 3g06_A          182 GLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLPVL-------------P  240 (622)
T ss_dssp             TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCCC-------------C
T ss_pred             CCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCCCC-------------C
Confidence            66666666655443 222   13455555555544332 221   124455555555555544411             2


Q ss_pred             CCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCC---CCccceecccccccccc
Q 006695          295 SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQLQF  354 (635)
Q Consensus       295 ~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l~~  354 (635)
                      ++|+.|+|++|.++.+|.   .+++|+.|+|++|++. .+|..   +++|+.|++++|+..+.
T Consensus       241 ~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          241 SELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHH
T ss_pred             CcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCc
Confidence            445555555555555543   3444555555544333 33331   23444445544444333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=1.5e-24  Score=225.41  Aligned_cols=229  Identities=25%  Similarity=0.308  Sum_probs=189.9

Q ss_pred             CCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           76 PENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        76 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      ..+++.|++++|+++.+|..+..+++|++|+|++|.+. .+| .++.+++|++|+|++|... .+|..++.+++|++|++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence            46889999999999999988888999999999999876 666 4888999999999998555 78888999999999999


Q ss_pred             cCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcc
Q 006695          155 EGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSI  234 (635)
Q Consensus       155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~  234 (635)
                      ++|+..+.+|..+.     ...+.+      .-..+++|++|++++|.++.+|..++.+++|++|++++|.+.+ +|..+
T Consensus       158 ~~n~~~~~~p~~~~-----~~~~~~------~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l  225 (328)
T 4fcg_A          158 RACPELTELPEPLA-----STDASG------EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAI  225 (328)
T ss_dssp             EEETTCCCCCSCSE-----EEC-CC------CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGG
T ss_pred             CCCCCccccChhHh-----hccchh------hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-Cchhh
Confidence            99888888876441     111111      0123467889999999999999999999999999999998875 66678


Q ss_pred             cCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccccchhhccCCCCccEEEcCCCC-CCcccc
Q 006695          235 CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEGLKDLYIGGSSLRQLNLSRND-SESLPA  312 (635)
Q Consensus       235 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~-~~~lp~  312 (635)
                      ..+++|++|++++|++.+.+|..++.+++|+.|++++|.+. .+|..+          ..+++|+.|+|++|+ .+.+|.
T Consensus       226 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~----------~~l~~L~~L~L~~n~~~~~iP~  295 (328)
T 4fcg_A          226 HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI----------HRLTQLEKLDLRGCVNLSRLPS  295 (328)
T ss_dssp             GGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG----------GGCTTCCEEECTTCTTCCCCCG
T ss_pred             ccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh----------hcCCCCCEEeCCCCCchhhccH
Confidence            89999999999999999999999999999999999998665 667655          445899999999987 578999


Q ss_pred             cccCCCCccEEeccCC
Q 006695          313 SITQLSQLRSLHLKDC  328 (635)
Q Consensus       313 ~l~~l~~L~~L~L~~n  328 (635)
                      ++.++++|+.+++..+
T Consensus       296 ~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          296 LIAQLPANCIILVPPH  311 (328)
T ss_dssp             GGGGSCTTCEEECCGG
T ss_pred             HHhhccCceEEeCCHH
Confidence            9999999999999864

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.92  E-value=3.6e-27  Score=256.69  Aligned_cols=351  Identities=12%  Similarity=0.081  Sum_probs=191.8

Q ss_pred             eeecCCCcccccChhh-hcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCC-CC--CCC
Q 006695            2 FLDLSKITSIHLSPQA-FANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPF-DF--EPE   77 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~-f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~-~~--~l~   77 (635)
                      .||++++++....... |..+++|+.|++++|.++..    ....++..+...++ |++|++++|.+..... .+  .+.
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~----~~~~l~~~l~~~~~-L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA----RCKDISSALRVNPA-LAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH----HHHHHHHHHHTCTT-CCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH----HHHHHHHHHHhCCC-cCEEeCCCCcCChHHHHHHHHHHh
Confidence            5888888876665544 88899999999999887611    11123444555554 8888888887654211 11  233


Q ss_pred             ----CceEEEcCCCCCc-----cccccCCCCCCCcEEEccCCCCCCCCC----C--CCCCCCCCEEeecCCCCCcc----
Q 006695           78 ----NLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQYLIRMP----D--LSETPNLERTNLKNCINLTC----  138 (635)
Q Consensus        78 ----~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~n~~~~~~p----~--l~~l~~L~~L~L~~n~~l~~----  138 (635)
                          +|++|++++|++.     .++..+..+++|++|+|++|.+....+    .  ....++|++|++++|.....    
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  161 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP  161 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence                6888888888877     356667778888888888887543211    1  23356788888888755542    


Q ss_pred             cCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccc-----cCcccccC
Q 006695          139 VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQE-----VPSSIECL  213 (635)
Q Consensus       139 ~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~-----lp~~~~~l  213 (635)
                      ++..+..+++|++|++++|......+..+.               ..+....++|++|++++|.++.     ++..+..+
T Consensus       162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---------------~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  226 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNNDINEAGVRVLC---------------QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASK  226 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHH---------------HHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHC
T ss_pred             HHHHHhhCCCCCEEECcCCCcchHHHHHHH---------------HHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhC
Confidence            345566677788888877653221111010               0000011244555555555543     34445555


Q ss_pred             CCccEEEeecccccccc-----hhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccC-chhcc
Q 006695          214 TNLEKLYINRCMRLKRL-----STSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELP-SSFAN  283 (635)
Q Consensus       214 ~~L~~L~L~~n~~~~~l-----p~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~~~~  283 (635)
                      ++|++|++++|.+....     +..+..+++|++|++++|.+...    ++..+..+++|++|++++|.++... ..+..
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            66666666666543321     11222455666666666654432    4455555666666666666554211 11100


Q ss_pred             cccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCCCCCCcCCC--------CCCccceecccccc
Q 006695          284 LEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDCSMLSSLPE--------LPQSLELLDAENCK  350 (635)
Q Consensus       284 l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n~~l~~lp~--------l~~sL~~L~l~~c~  350 (635)
                           .+....++|++|++++|.++.     ++..+..+++|++|+|++|.+....+.        ..++|++|++++|.
T Consensus       307 -----~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  381 (461)
T 1z7x_W          307 -----TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD  381 (461)
T ss_dssp             -----HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             -----HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence                 001122456666666666543     344455556666666666544322111        12456666666664


Q ss_pred             ccc----ccCccccCccccchhhhhhhhhcc
Q 006695          351 QLQ----FIPEILSGLEEVDASVLEKATFLN  377 (635)
Q Consensus       351 ~l~----~~~~~~~~L~~L~~l~L~~n~~~~  377 (635)
                      ...    .++..+..+++|+.+++++|++..
T Consensus       382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~  412 (461)
T 1z7x_W          382 VSDSSCSSLAATLLANHSLRELDLSNNCLGD  412 (461)
T ss_dssp             CCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred             CChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence            432    445555556666666666665544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=3.7e-24  Score=222.43  Aligned_cols=206  Identities=20%  Similarity=0.261  Sum_probs=109.9

Q ss_pred             CCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCccccccCCCC
Q 006695           21 MPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQIWEGKKRA   99 (635)
Q Consensus        21 l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~l~~~~~~l   99 (635)
                      ..+++.|++++|.++         .+|..+..+++ |++|++++|.+..+|..+ .+++|++|+|++|.++.+|..+..+
T Consensus        80 ~~~l~~L~L~~n~l~---------~lp~~l~~l~~-L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l  149 (328)
T 4fcg_A           80 QPGRVALELRSVPLP---------QFPDQAFRLSH-LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASL  149 (328)
T ss_dssp             STTCCEEEEESSCCS---------SCCSCGGGGTT-CSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGC
T ss_pred             ccceeEEEccCCCch---------hcChhhhhCCC-CCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcC
Confidence            356666666666655         34444444433 666666666666666554 4566666666666666666666666


Q ss_pred             CCCcEEEccCCCCCCCCCC-CC---------CCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCC
Q 006695          100 FKLKYVDIHNSQYLIRMPD-LS---------ETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHF  169 (635)
Q Consensus       100 ~~L~~L~Ls~n~~~~~~p~-l~---------~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l  169 (635)
                      ++|++|+|++|.....+|. +.         ++++|++|+|++|... .+|..++.+++|++|++++|.           
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~-----------  217 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSP-----------  217 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSC-----------
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCC-----------
Confidence            6666666666555555552 22         2555555555555332 455555555555555555443           


Q ss_pred             CCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695          170 MSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS  249 (635)
Q Consensus       170 ~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~  249 (635)
                                                       ++.+|..++.+++|++|++++|.+.+.+|..++.+++|++|+|++|+
T Consensus       218 ---------------------------------l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~  264 (328)
T 4fcg_A          218 ---------------------------------LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCS  264 (328)
T ss_dssp             ---------------------------------CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCT
T ss_pred             ---------------------------------CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCC
Confidence                                             33334444445555555555555555555555555555555555555


Q ss_pred             CCCcchhhhcCCCCCCEEEecCCCcc-ccCchh
Q 006695          250 KLERFPEILEKMESVKCISLERTAIT-ELPSSF  281 (635)
Q Consensus       250 ~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~  281 (635)
                      ..+.+|..+..+++|+.|++++|.+. .+|..+
T Consensus       265 ~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l  297 (328)
T 4fcg_A          265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI  297 (328)
T ss_dssp             TCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred             chhhcchhhhcCCCCCEEeCCCCCchhhccHHH
Confidence            55555555555555555555554333 344433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.91  E-value=3.6e-23  Score=224.78  Aligned_cols=243  Identities=19%  Similarity=0.202  Sum_probs=152.5

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNC  133 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n  133 (635)
                      ..+.++..+..+..+|..+. ++|+.|+|++|+++.+ +..+..+++|++|+|++|.+....+ .|.++++|++|+|++|
T Consensus        55 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n  133 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN  133 (452)
T ss_dssp             SSCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence            35677888888888887653 6888999999998877 4567888999999999988766555 4888899999999988


Q ss_pred             CCCcccCccccCCCCCCEEeecCCCCCCccCC-CC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccc
Q 006695          134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS-NL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIE  211 (635)
Q Consensus       134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~  211 (635)
                      ......+..+..+++|++|++++|+. +.++. .+ .+++|+.|++++|+.++.++..                   .+.
T Consensus       134 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-------------------~~~  193 (452)
T 3zyi_A          134 WLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLMRLDLGELKKLEYISEG-------------------AFE  193 (452)
T ss_dssp             CCSBCCTTTSSSCTTCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTT-------------------TTT
T ss_pred             cCCccChhhhcccCCCCEEECCCCCc-ceeCHhHHhcCCcccEEeCCCCCCccccChh-------------------hcc
Confidence            66655555688889999999988764 44544 23 6777777777777666655431                   233


Q ss_pred             cCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhc
Q 006695          212 CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY  291 (635)
Q Consensus       212 ~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~  291 (635)
                      .+++|+.|++++|.+.+. | .+..+++|+.|+|++|.+.+..|..|..+++|+.|++++|.++.++..         .+
T Consensus       194 ~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~~  262 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN---------AF  262 (452)
T ss_dssp             TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTT---------TT
T ss_pred             CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHH---------Hh
Confidence            444444444444443322 1 234444555555555554444455555555555555555555544221         12


Q ss_pred             cCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695          292 IGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       292 ~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~  330 (635)
                      ..+++|+.|+|++|+++.+|.. +..+++|+.|+|++|+.
T Consensus       263 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          263 DGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             TTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             cCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            3345555555555555555433 45566666666666543

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.91  E-value=6.1e-24  Score=223.20  Aligned_cols=265  Identities=15%  Similarity=0.164  Sum_probs=155.2

Q ss_pred             eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCC
Q 006695           58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCIN  135 (635)
Q Consensus        58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~  135 (635)
                      ...+.+++.++.+|..+. ++|++|++++|+++.++. .+..+++|++|+|++|.+....|+ ++++++|++|++++|..
T Consensus        34 ~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           34 GICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             SEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             eEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC
Confidence            346667777777777653 478888888888887765 577788888888888876655553 77788888888888755


Q ss_pred             CcccCccccCCCCCCEEeecCCCCCCccCC--CC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccc
Q 006695          136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPS--NL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIE  211 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~--~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~  211 (635)
                      ....+..++.+++|++|++++|+ ++.+|.  .+ .+++|+.|++++|..                    ++.++ ..++
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~--------------------~~~~~~~~~~  171 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDT--------------------FTKIQRKDFA  171 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSS--------------------CCEECTTTTT
T ss_pred             CcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcc--------------------ccccCHHHcc
Confidence            44333347778888888887764 334443  12 344444444444332                    44442 3455


Q ss_pred             cCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCch-hcccccchhh
Q 006695          212 CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSS-FANLEGLKDL  290 (635)
Q Consensus       212 ~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~l  290 (635)
                      .+++|++|++++|.+.+..|..+..+++|++|++++|.+.......+..+++|+.|++++|.++.++.. +..       
T Consensus       172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------  244 (353)
T 2z80_A          172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------  244 (353)
T ss_dssp             TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------
T ss_pred             CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-------
Confidence            666666666666666555566666666666666666554332222334466666666666666654321 100       


Q ss_pred             ccCCCCccEEEcCCCCCC-----cccccccCCCCccEEeccCCCCCCcCCC----CCCccceecccccccc
Q 006695          291 YIGGSSLRQLNLSRNDSE-----SLPASITQLSQLRSLHLKDCSMLSSLPE----LPQSLELLDAENCKQL  352 (635)
Q Consensus       291 ~~~~~~L~~L~Ls~n~~~-----~lp~~l~~l~~L~~L~L~~n~~l~~lp~----l~~sL~~L~l~~c~~l  352 (635)
                      ......++.++++++.+.     .+|..+..+++|++|++++|++. .+|.    ..++|++|++++|+..
T Consensus       245 ~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          245 GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             --CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence            112344555555555533     35555566666666666665444 4443    1355666666666543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.91  E-value=3.5e-23  Score=224.11  Aligned_cols=220  Identities=17%  Similarity=0.146  Sum_probs=134.2

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNC  133 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n  133 (635)
                      ..+.++..+..++.+|..+. ++++.|+|++|+++.++ ..+..+++|++|+|++|.+....+ .|.++++|++|+|++|
T Consensus        44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            35677777888888887653 67888888888888775 567888888888888887655444 4778888888888888


Q ss_pred             CCCcccCccccCCCCCCEEeecCCCCCCccCC-CC-CCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC
Q 006695          134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS-NL-HFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP  207 (635)
Q Consensus       134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~-~~-~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp  207 (635)
                      ......+..+..+++|+.|++++|.. +.++. .+ .+++|+.|++++|+.+..++.    .+.+|++|++++|.++.+|
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~  201 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP  201 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCC-CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcc-cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence            55544445688888888888887653 34443 22 667777777777665555443    1244555555555555554


Q ss_pred             cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccC
Q 006695          208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP  278 (635)
Q Consensus       208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp  278 (635)
                      . +..+++|+.|+|++|.+.+..|..|.++++|+.|+|++|.+.+..+..|..+++|+.|+|++|+++.+|
T Consensus       202 ~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  271 (440)
T 3zyj_A          202 N-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP  271 (440)
T ss_dssp             C-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred             c-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence            2 444445555555555444444444444444444444444444444444444444444444444444433

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=2.6e-23  Score=211.59  Aligned_cols=200  Identities=17%  Similarity=0.229  Sum_probs=99.0

Q ss_pred             eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCC
Q 006695           58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCIN  135 (635)
Q Consensus        58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~  135 (635)
                      +.++.+++.++.+|..+ +++|++|++++|+++.++. .+..+++|++|+|++|.+....| .+..+++|++|++++|..
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            45566666666666543 3566666666666666653 35666666666666666544434 366666666666666652


Q ss_pred             Cccc-CccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccC
Q 006695          136 LTCV-PSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECL  213 (635)
Q Consensus       136 l~~~-~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l  213 (635)
                      .+.+ +..+..+++|++|++++|......+..+                    ..+++|++|++++|.++.++.. ++.+
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l  152 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--------------------RGLAALQYLYLQDNALQALPDDTFRDL  152 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--------------------TTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--------------------hCCcCCCEEECCCCcccccCHhHhccC
Confidence            3333 4455666666666665544322212111                    0112333333333444443322 4444


Q ss_pred             CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccC
Q 006695          214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELP  278 (635)
Q Consensus       214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp  278 (635)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|
T Consensus       153 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC
Confidence            44444444444444333333444444444444444444444444444444444444444444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=1.5e-24  Score=224.40  Aligned_cols=259  Identities=14%  Similarity=0.117  Sum_probs=141.6

Q ss_pred             CceEEEcCCCCCccccccC-CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695           78 NLVKLNLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE  155 (635)
Q Consensus        78 ~L~~L~L~~n~l~~l~~~~-~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~  155 (635)
                      .++.++++.+.+...+..+ ..+++|++|+|++|.+....| .+..+++|++|+|++|...+..+  +..+++|++|+++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls   88 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN   88 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence            4555566666665444332 455677777777776555443 36677777777777765444332  6677777777776


Q ss_pred             CCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhccc
Q 006695          156 GCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC  235 (635)
Q Consensus       156 ~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~  235 (635)
                      +|. ++.++.   .                     ++|++|++++|.++.++..  .+++|++|++++|.+.+..+..+.
T Consensus        89 ~n~-l~~l~~---~---------------------~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~  141 (317)
T 3o53_A           89 NNY-VQELLV---G---------------------PSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEG  141 (317)
T ss_dssp             SSE-EEEEEE---C---------------------TTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred             CCc-cccccC---C---------------------CCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhh
Confidence            654 222221   1                     2344444444444444322  244555555555555544444555


Q ss_pred             CCCCCcEEecCCCCCCCcchhhh-cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc
Q 006695          236 KLKSLHVLVLDDCSKLERFPEIL-EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI  314 (635)
Q Consensus       236 ~l~~L~~L~Ls~n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l  314 (635)
                      .+++|++|++++|.+.+..+..+ ..+++|++|++++|.++.+|..           ..+++|++|+|++|.++.+|..+
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~l~~~~  210 (317)
T 3o53_A          142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEF  210 (317)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGG
T ss_pred             ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-----------cccccCCEEECCCCcCCcchhhh
Confidence            55555555555555554444433 2455555555555555554321           12455666666666665555555


Q ss_pred             cCCCCccEEeccCCCCCCcCCCC---CCccceecccccccc-cccCccccCccccchhhhhhhhhcc
Q 006695          315 TQLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCKQL-QFIPEILSGLEEVDASVLEKATFLN  377 (635)
Q Consensus       315 ~~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~~l-~~~~~~~~~L~~L~~l~L~~n~~~~  377 (635)
                      ..+++|++|+|++|++. .+|..   +++|+.|++++|+.. ..++..+..+++|+.++++++....
T Consensus       211 ~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             GGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence            55666666666655443 34432   245666666666554 4555666667777777777554443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=1.2e-25  Score=244.56  Aligned_cols=339  Identities=17%  Similarity=0.151  Sum_probs=242.6

Q ss_pred             eeecCCCcccccC----hhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCC-----CCC
Q 006695            2 FLDLSKITSIHLS----PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKA-----LPF   72 (635)
Q Consensus         2 ~LdLs~n~~~~l~----~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~   72 (635)
                      .|++++|.+....    +.+|..+++|++|++++|.++...    ...+...+.....+|++|++++|.+..     +|.
T Consensus        32 ~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~  107 (461)
T 1z7x_W           32 VVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG----VHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS  107 (461)
T ss_dssp             EEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH----HHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             EEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH----HHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence            6889999866432    567888999999999999876210    011223333322259999999999873     455


Q ss_pred             CC-CCCCceEEEcCCCCCccc-----ccc-CCCCCCCcEEEccCCCCCCCC----C-CCCCCCCCCEEeecCCCCCcccC
Q 006695           73 DF-EPENLVKLNLPYSKVVQI-----WEG-KKRAFKLKYVDIHNSQYLIRM----P-DLSETPNLERTNLKNCINLTCVP  140 (635)
Q Consensus        73 ~~-~l~~L~~L~L~~n~l~~l-----~~~-~~~l~~L~~L~Ls~n~~~~~~----p-~l~~l~~L~~L~L~~n~~l~~~~  140 (635)
                      .+ .+++|++|++++|.+...     ... ....++|++|+|++|.+....    + .+..+++|++|++++|......+
T Consensus       108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~  187 (461)
T 1z7x_W          108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV  187 (461)
T ss_dssp             HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred             HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence            55 689999999999998742     222 234678999999999866532    2 25668999999999997554433


Q ss_pred             cccc-----CCCCCCEEeecCCCCCCc----cCCCC-CCCCCcEEecCCCCCCCcc------C---cccCCcceEEeccc
Q 006695          141 SSVQ-----NFNHLSMLCFEGCKSLRS----FPSNL-HFMSPIKIDFSSCFNLTEF------P---QISGNITDLILSET  201 (635)
Q Consensus       141 ~~i~-----~l~~L~~L~L~~~~~l~~----lp~~~-~l~~L~~L~l~~c~~l~~~------p---~~~~~L~~L~L~~n  201 (635)
                      ..+.     ..++|+.|++++|.....    ++..+ .+++|+.|++++|. ++..      +   ...++|++|++++|
T Consensus       188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n  266 (461)
T 1z7x_W          188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWEC  266 (461)
T ss_dssp             HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCC
Confidence            3332     367999999999864432    33333 67899999999974 3321      1   12468999999999


Q ss_pred             cccc-----cCcccccCCCccEEEeecccccccchhccc-----CCCCCcEEecCCCCCCCc----chhhhcCCCCCCEE
Q 006695          202 AIQE-----VPSSIECLTNLEKLYINRCMRLKRLSTSIC-----KLKSLHVLVLDDCSKLER----FPEILEKMESVKCI  267 (635)
Q Consensus       202 ~i~~-----lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~-----~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L  267 (635)
                      .++.     ++..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+.+.    ++..+..+++|++|
T Consensus       267 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  346 (461)
T 1z7x_W          267 GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL  346 (461)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEE
T ss_pred             CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEE
Confidence            9887     677788899999999999987654443332     236899999999987765    56777888999999


Q ss_pred             EecCCCccccC-chhcccccchhhc-cCCCCccEEEcCCCCCC-----cccccccCCCCccEEeccCCCCCCc-------
Q 006695          268 SLERTAITELP-SSFANLEGLKDLY-IGGSSLRQLNLSRNDSE-----SLPASITQLSQLRSLHLKDCSMLSS-------  333 (635)
Q Consensus       268 ~L~~n~l~~lp-~~~~~l~~L~~l~-~~~~~L~~L~Ls~n~~~-----~lp~~l~~l~~L~~L~L~~n~~l~~-------  333 (635)
                      ++++|.++... ..+.      ..+ ...++|++|+|++|.++     .+|..+..+++|++|++++|++...       
T Consensus       347 ~Ls~n~i~~~~~~~l~------~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~  420 (461)
T 1z7x_W          347 QISNNRLEDAGVRELC------QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE  420 (461)
T ss_dssp             ECCSSBCHHHHHHHHH------HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred             EccCCccccccHHHHH------HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHH
Confidence            99999887532 2221      111 12578999999999987     6788888899999999999877543       


Q ss_pred             -CCCCCCccceeccccccc
Q 006695          334 -LPELPQSLELLDAENCKQ  351 (635)
Q Consensus       334 -lp~l~~sL~~L~l~~c~~  351 (635)
                       +|.....|+.|++.++..
T Consensus       421 ~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          421 SVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             HHTSTTCCCCEEECTTCCC
T ss_pred             HhccCCcchhheeeccccc
Confidence             344445677777666544

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=1.1e-23  Score=216.59  Aligned_cols=274  Identities=16%  Similarity=0.146  Sum_probs=179.7

Q ss_pred             eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCC---CCCCCCCCCCCEEeecCC
Q 006695           58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIR---MPDLSETPNLERTNLKNC  133 (635)
Q Consensus        58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~---~p~l~~l~~L~~L~L~~n  133 (635)
                      +.++++++.++.+|..+. ++|++|++++|+++.+|.. +..+++|++|+|++|.+...   .+.+..+++|++|++++|
T Consensus        10 ~~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n   88 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN   88 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred             CEEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence            456666666777776542 5677777777777777655 46777777777777765422   123455677777777777


Q ss_pred             CCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccccc-Cccccc
Q 006695          134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIEC  212 (635)
Q Consensus       134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~  212 (635)
                      . ...+|..+..+++|++|++++|... .++...                  ....+++|++|++++|.++.+ +..+..
T Consensus        89 ~-i~~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~  148 (306)
T 2z66_A           89 G-VITMSSNFLGLEQLEHLDFQHSNLK-QMSEFS------------------VFLSLRNLIYLDISHTHTRVAFNGIFNG  148 (306)
T ss_dssp             S-EEEEEEEEETCTTCCEEECTTSEEE-SSTTTT------------------TTTTCTTCCEEECTTSCCEECSTTTTTT
T ss_pred             c-cccChhhcCCCCCCCEEECCCCccc-ccccch------------------hhhhccCCCEEECCCCcCCccchhhccc
Confidence            3 3456666777777777777775422 222100                  001124556666666666654 344777


Q ss_pred             CCCccEEEeecccccc-cchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhc
Q 006695          213 LTNLEKLYINRCMRLK-RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY  291 (635)
Q Consensus       213 l~~L~~L~L~~n~~~~-~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~  291 (635)
                      +++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.++..         .+
T Consensus       149 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------~~  219 (306)
T 2z66_A          149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF---------PY  219 (306)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG---------GG
T ss_pred             CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh---------hc
Confidence            8888888888888766 5677788888888888888888777778888888888888888888877642         13


Q ss_pred             cCCCCccEEEcCCCCCCcc-cccccCC-CCccEEeccCCCCCCcCC-----CCCCccceecccccccccccCccccC
Q 006695          292 IGGSSLRQLNLSRNDSESL-PASITQL-SQLRSLHLKDCSMLSSLP-----ELPQSLELLDAENCKQLQFIPEILSG  361 (635)
Q Consensus       292 ~~~~~L~~L~Ls~n~~~~l-p~~l~~l-~~L~~L~L~~n~~l~~lp-----~l~~sL~~L~l~~c~~l~~~~~~~~~  361 (635)
                      ..+++|+.|+|++|++... |..+..+ ++|++|+|++|++...-+     .+....+.+.+..+...-..|..+.+
T Consensus       220 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g  296 (306)
T 2z66_A          220 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQG  296 (306)
T ss_dssp             TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred             cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence            4567888888888887664 4567777 488999999888765422     23344444544444433344544444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=7.1e-23  Score=208.35  Aligned_cols=251  Identities=18%  Similarity=0.204  Sum_probs=196.7

Q ss_pred             ceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695           79 LVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC  157 (635)
Q Consensus        79 L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~  157 (635)
                      -++++.+++.++.+|.++  .++|++|+|++|.+....+ .+..+++|++|++++|......+..+..+++|++|++++|
T Consensus        13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            378899999999998765  4699999999999766555 4899999999999999777666888999999999999988


Q ss_pred             CCCCccCC-CCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhccc
Q 006695          158 KSLRSFPS-NLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSIC  235 (635)
Q Consensus       158 ~~l~~lp~-~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~  235 (635)
                      ..++.++. .+                    ..+++|++|++++|.++.+ |..+..+++|++|++++|.+.+..+..+.
T Consensus        91 ~~l~~~~~~~~--------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  150 (285)
T 1ozn_A           91 AQLRSVDPATF--------------------HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR  150 (285)
T ss_dssp             TTCCCCCTTTT--------------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCccccCHHHh--------------------cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhc
Confidence            75555532 21                    1124677777777778877 45688999999999999998877777789


Q ss_pred             CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCCccccc-
Q 006695          236 KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-  313 (635)
Q Consensus       236 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-  313 (635)
                      .+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+          ..+++|+.|++++|.++.+|.. 
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------~~l~~L~~L~l~~n~l~~~~~~~  220 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF----------RDLGRLMTLYLFANNLSALPTEA  220 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT----------TTCTTCCEEECCSSCCSCCCHHH
T ss_pred             cCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHc----------cCcccccEeeCCCCcCCcCCHHH
Confidence            999999999999988776667799999999999999999876 4443          4568999999999999988854 


Q ss_pred             ccCCCCccEEeccCCCCCCcCCC--CCCccceecccccccccccCccccC
Q 006695          314 ITQLSQLRSLHLKDCSMLSSLPE--LPQSLELLDAENCKQLQFIPEILSG  361 (635)
Q Consensus       314 l~~l~~L~~L~L~~n~~l~~lp~--l~~sL~~L~l~~c~~l~~~~~~~~~  361 (635)
                      +..+++|++|++++|++....+.  ....++.+....+...-..|..+.+
T Consensus       221 ~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g  270 (285)
T 1ozn_A          221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAG  270 (285)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCC
Confidence            88999999999999987654432  2234555555555544455555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=5.9e-23  Score=215.66  Aligned_cols=279  Identities=18%  Similarity=0.148  Sum_probs=206.6

Q ss_pred             CCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCcccc-ccC
Q 006695           20 NMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIW-EGK   96 (635)
Q Consensus        20 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-~~~   96 (635)
                      .++.....+.+++.++         .+|.++.   .+|++|++++|.++.+|.. | .+++|++|++++|+++.++ ..+
T Consensus        29 ~C~~~~~c~~~~~~l~---------~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   96 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN---------SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF   96 (353)
T ss_dssp             EECTTSEEECCSTTCS---------SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred             CCCCCeEeeCCCCCcc---------ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence            4555667888888877         3444433   3699999999999999884 5 7899999999999999875 568


Q ss_pred             CCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCc--cccCCCCCCEEeecCCCCCCccCCCCCCCCCc
Q 006695           97 KRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPS--SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPI  173 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~--~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~  173 (635)
                      ..+++|++|+|++|++....+. ++++++|++|++++|... .+|.  .+..+++|++|++++|+.++.++...      
T Consensus        97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~------  169 (353)
T 2z80_A           97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD------  169 (353)
T ss_dssp             TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT------
T ss_pred             CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH------
Confidence            8999999999999986654444 889999999999998554 5554  78899999999999987666654311      


Q ss_pred             EEecCCCCCCCccCcccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC
Q 006695          174 KIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE  252 (635)
Q Consensus       174 ~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~  252 (635)
                               +    ...++|++|++++|.++.+ |..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+
T Consensus       170 ---------~----~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          170 ---------F----AGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT  236 (353)
T ss_dssp             ---------T----TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTT
T ss_pred             ---------c----cCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccc
Confidence                     0    1124566677777777765 5668888888888888887644333344558888888888887776


Q ss_pred             cchhhh---cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc-cCCCCccEEeccCC
Q 006695          253 RFPEIL---EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI-TQLSQLRSLHLKDC  328 (635)
Q Consensus       253 ~~~~~l---~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l-~~l~~L~~L~L~~n  328 (635)
                      ..+..+   ...+.++.++++++.++..     .+..++..+..+++|+.|+|++|+++.+|..+ ..+++|++|+|++|
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~-----~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N  311 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVKITDE-----SLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN  311 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCBCCHH-----HHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccccchhhccccccccccCc-----chhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCC
Confidence            544332   3467788888888877631     01112334456789999999999999999875 89999999999999


Q ss_pred             CCCCcCC
Q 006695          329 SMLSSLP  335 (635)
Q Consensus       329 ~~l~~lp  335 (635)
                      ++....|
T Consensus       312 ~~~~~~~  318 (353)
T 2z80_A          312 PWDCSCP  318 (353)
T ss_dssp             CBCCCHH
T ss_pred             CccCcCC
Confidence            8877554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=3.5e-22  Score=216.20  Aligned_cols=240  Identities=16%  Similarity=0.189  Sum_probs=204.5

Q ss_pred             CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCcccc-ccCCCC
Q 006695           23 NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIW-EGKKRA   99 (635)
Q Consensus        23 ~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-~~~~~l   99 (635)
                      ..+.++..+..++         .+|.++   +.+++.|++++|.+..++.. | .+++|++|+|++|+++.++ ..+..+
T Consensus        44 ~~~~v~c~~~~l~---------~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l  111 (440)
T 3zyj_A           44 QFSKVICVRKNLR---------EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGL  111 (440)
T ss_dssp             TSCEEECCSCCCS---------SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTC
T ss_pred             CCCEEEeCCCCcC---------cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCC
Confidence            3556777666666         344443   34699999999999998855 5 7999999999999999886 568899


Q ss_pred             CCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC--CCCCCcEEe
Q 006695          100 FKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL--HFMSPIKID  176 (635)
Q Consensus       100 ~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~  176 (635)
                      ++|++|+|++|++....+ .+..+++|++|+|++|......+..+..+++|+.|++++|+.+..++...  .+++|+.|+
T Consensus       112 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~  191 (440)
T 3zyj_A          112 ANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN  191 (440)
T ss_dssp             SSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred             ccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence            999999999998765544 38999999999999997666666689999999999999988888887643  899999999


Q ss_pred             cCCCCCCCccCcc--cCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCc
Q 006695          177 FSSCFNLTEFPQI--SGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER  253 (635)
Q Consensus       177 l~~c~~l~~~p~~--~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~  253 (635)
                      +++| .++.+|..  ..+|++|+|++|.++.+ |..+..+++|+.|+|++|.+.+..+..|.++++|+.|+|++|.+.+.
T Consensus       192 L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  270 (440)
T 3zyj_A          192 LAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL  270 (440)
T ss_dssp             CTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred             CCCC-cCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence            9997 56677753  36899999999999988 56799999999999999999998899999999999999999999888


Q ss_pred             chhhhcCCCCCCEEEecCCCcc
Q 006695          254 FPEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       254 ~~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      .+..+..+++|+.|+|++|.+.
T Consensus       271 ~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          271 PHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTTTSSCTTCCEEECCSSCEE
T ss_pred             ChhHhccccCCCEEEcCCCCcc
Confidence            8888899999999999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=4.5e-23  Score=212.02  Aligned_cols=243  Identities=19%  Similarity=0.193  Sum_probs=170.5

Q ss_pred             cEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc---cccCCCC
Q 006695           25 RFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI---WEGKKRA   99 (635)
Q Consensus        25 ~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l---~~~~~~l   99 (635)
                      +.++.+++.++         .+|.++   +.+|++|++++|.++.+|.. | .+++|++|++++|.++.+   +..+..+
T Consensus        10 ~~l~c~~~~l~---------~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~   77 (306)
T 2z66_A           10 TEIRCNSKGLT---------SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT   77 (306)
T ss_dssp             TEEECCSSCCS---------SCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSC
T ss_pred             CEEEcCCCCcc---------cCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccc
Confidence            45666666665         333332   23588888888888888876 4 678888888888888755   4555667


Q ss_pred             CCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccC-ccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecC
Q 006695          100 FKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVP-SSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFS  178 (635)
Q Consensus       100 ~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~-~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~  178 (635)
                      ++|++|+|++|.+....+.+..+++|++|++++|......+ ..+..+++|++|++++|......+..+           
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------  146 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF-----------  146 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT-----------
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc-----------
Confidence            88888888888755433347778888888888875443333 467788888888888776433333322           


Q ss_pred             CCCCCCccCcccCCcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh
Q 006695          179 SCFNLTEFPQISGNITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE  256 (635)
Q Consensus       179 ~c~~l~~~p~~~~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~  256 (635)
                               ..+++|++|++++|.+++  +|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+.
T Consensus       147 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  217 (306)
T 2z66_A          147 ---------NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF  217 (306)
T ss_dssp             ---------TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred             ---------ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence                     112455666666666664  677788888888888888888777777888888888888888887777666


Q ss_pred             hhcCCCCCCEEEecCCCccccC-chhcccccchhhccCC-CCccEEEcCCCCCCc
Q 006695          257 ILEKMESVKCISLERTAITELP-SSFANLEGLKDLYIGG-SSLRQLNLSRNDSES  309 (635)
Q Consensus       257 ~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~l~~~~-~~L~~L~Ls~n~~~~  309 (635)
                      .+..+++|+.|++++|.++..+ ..+          ..+ ++|+.|+|++|.+..
T Consensus       218 ~~~~l~~L~~L~L~~N~l~~~~~~~~----------~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          218 PYKCLNSLQVLDYSLNHIMTSKKQEL----------QHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCSSSSC----------CCCCTTCCEEECTTCCEEC
T ss_pred             hccCcccCCEeECCCCCCcccCHHHH----------HhhhccCCEEEccCCCeec
Confidence            7888888888888888887643 332          333 478888888888643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=5.2e-22  Score=215.67  Aligned_cols=244  Identities=18%  Similarity=0.166  Sum_probs=198.6

Q ss_pred             CcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCcccc-ccCCCCC
Q 006695           24 LRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIW-EGKKRAF  100 (635)
Q Consensus        24 L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~-~~~~~l~  100 (635)
                      .+.++..+..++         .+|.++   +.++++|++++|.+..++.. | .+++|++|+|++|+++.++ ..+..++
T Consensus        56 ~~~v~c~~~~l~---------~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~  123 (452)
T 3zyi_A           56 FSKVVCTRRGLS---------EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA  123 (452)
T ss_dssp             SCEEECCSSCCS---------SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred             CcEEEECCCCcC---------ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc
Confidence            456666666655         344433   35699999999999988654 6 7999999999999999886 6689999


Q ss_pred             CCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCC
Q 006695          101 KLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS  179 (635)
Q Consensus       101 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~  179 (635)
                      +|++|+|++|++....++ +..+++|++|+|++|......+..+..+++|+.|++++|+.++.++...            
T Consensus       124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~------------  191 (452)
T 3zyi_A          124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA------------  191 (452)
T ss_dssp             TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT------------
T ss_pred             cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh------------
Confidence            999999999997655554 8899999999999997665556679999999999999988888777532            


Q ss_pred             CCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695          180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE  259 (635)
Q Consensus       180 c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~  259 (635)
                         +    ..+.+|++|++++|.++.+| .+..+++|+.|+|++|.+.+..|..|.++++|+.|++++|.+.+..+..|.
T Consensus       192 ---~----~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  263 (452)
T 3zyi_A          192 ---F----EGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD  263 (452)
T ss_dssp             ---T----TTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             ---c----cCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence               0    11245666666777777775 477889999999999999888888999999999999999998888888899


Q ss_pred             CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                      .+++|+.|+|++|+++.+|...         +..+++|+.|+|++|.+.
T Consensus       264 ~l~~L~~L~L~~N~l~~~~~~~---------~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          264 GLASLVELNLAHNNLSSLPHDL---------FTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTS---------STTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEEECCCCcCCccChHH---------hccccCCCEEEccCCCcC
Confidence            9999999999999999887632         355688999999999854

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.89  E-value=9.3e-24  Score=218.43  Aligned_cols=239  Identities=14%  Similarity=0.104  Sum_probs=185.0

Q ss_pred             CCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCC
Q 006695          101 KLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSS  179 (635)
Q Consensus       101 ~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~  179 (635)
                      +++.++++++.+...++. +..+++|++|+|++|......|..+..+++|+.|++++|......+            +  
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------------~--   76 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD------------L--   76 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE------------E--
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh------------h--
Confidence            355556666654322222 4556789999999987766666788899999999998876332211            1  


Q ss_pred             CCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695          180 CFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE  259 (635)
Q Consensus       180 c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~  259 (635)
                              ..+++|++|++++|.+++++.    .++|++|++++|.+.+..+.   .+++|++|++++|.+.+..+..+.
T Consensus        77 --------~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~  141 (317)
T 3o53_A           77 --------ESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEG  141 (317)
T ss_dssp             --------TTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTG
T ss_pred             --------hhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhh
Confidence                    123567888888888887763    48999999999998776554   468899999999999888888899


Q ss_pred             CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC--C
Q 006695          260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE--L  337 (635)
Q Consensus       260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~--l  337 (635)
                      .+++|+.|++++|.++.++...        +...+++|++|+|++|.++.+|. ...+++|++|+|++|++.+..+.  .
T Consensus       142 ~l~~L~~L~Ls~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~  212 (317)
T 3o53_A          142 CRSRVQYLDLKLNEIDTVNFAE--------LAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQS  212 (317)
T ss_dssp             GGSSEEEEECTTSCCCEEEGGG--------GGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred             ccCCCCEEECCCCCCCcccHHH--------HhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcCCcchhhhcc
Confidence            9999999999999999764321        12346899999999999999974 44699999999999877654343  3


Q ss_pred             CCccceecccccccccccCccccCccccchhhhhhhhhccc
Q 006695          338 PQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       338 ~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      +++|+.|++++|.. +.+|..+..+++|+.+++++|++.+.
T Consensus       213 l~~L~~L~L~~N~l-~~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          213 AAGVTWISLRNNKL-VLIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             GTTCSEEECTTSCC-CEECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             cCcccEEECcCCcc-cchhhHhhcCCCCCEEEccCCCccCc
Confidence            57999999999965 46888899999999999999999844

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.88  E-value=2.6e-23  Score=214.58  Aligned_cols=238  Identities=20%  Similarity=0.167  Sum_probs=124.3

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcc--ccccCC-------CCCCCcEEEccCCCCCCCCCC-C--CCCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQ--IWEGKK-------RAFKLKYVDIHNSQYLIRMPD-L--SETP  123 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~--l~~~~~-------~l~~L~~L~Ls~n~~~~~~p~-l--~~l~  123 (635)
                      +|+.|++.+|.+ .+|..+. ..|+.|++++|.++.  ++..+.       .+++|++|+|++|.+....|. +  ..++
T Consensus        44 ~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~  121 (312)
T 1wwl_A           44 SLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP  121 (312)
T ss_dssp             ECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred             CceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence            366677777777 6665431 117777777777753  344333       567777777777776655553 3  6677


Q ss_pred             CCCEEeecCCCCCcccCccccCC-----CCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEE
Q 006695          124 NLERTNLKNCINLTCVPSSVQNF-----NHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLI  197 (635)
Q Consensus       124 ~L~~L~L~~n~~l~~~~~~i~~l-----~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~  197 (635)
                      +|++|+|++|...+. |..++.+     ++|++|++++|+.....+..+ .++                     +|++|+
T Consensus       122 ~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~---------------------~L~~L~  179 (312)
T 1wwl_A          122 DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP---------------------ALSTLD  179 (312)
T ss_dssp             CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS---------------------SCCEEE
T ss_pred             CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC---------------------CCCEEE
Confidence            777777777754444 5555554     566666666654322222221 222                     233333


Q ss_pred             eccccccc---cCccc--ccCCCccEEEeecccccc--cch-hcccCCCCCcEEecCCCCCCCcch-hhhcCCCCCCEEE
Q 006695          198 LSETAIQE---VPSSI--ECLTNLEKLYINRCMRLK--RLS-TSICKLKSLHVLVLDDCSKLERFP-EILEKMESVKCIS  268 (635)
Q Consensus       198 L~~n~i~~---lp~~~--~~l~~L~~L~L~~n~~~~--~lp-~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~  268 (635)
                      +++|.+..   +|..+  +.+++|++|++++|.+.+  .++ ..+..+++|++|++++|.+.+..| ..+..+++|+.|+
T Consensus       180 Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  259 (312)
T 1wwl_A          180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN  259 (312)
T ss_dssp             CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred             CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence            33333221   12222  445555555555555441  111 223345555555555555544442 2334455555555


Q ss_pred             ecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          269 LERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       269 L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      +++|.|+.+|..+          .  ++|+.|+|++|+++.+|. +..+++|++|+|++|++
T Consensus       260 Ls~N~l~~ip~~~----------~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          260 LSFTGLKQVPKGL----------P--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             CTTSCCSSCCSSC----------C--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             CCCCccChhhhhc----------c--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence            5555555555432          0  455555555555555544 55555555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.6e-22  Score=221.57  Aligned_cols=213  Identities=12%  Similarity=0.078  Sum_probs=110.2

Q ss_pred             CceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecC
Q 006695           78 NLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEG  156 (635)
Q Consensus        78 ~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~  156 (635)
                      +|++|+|++|.+..++ ..+..+++|++|+|++|.+....| ++.+++|++|+|++|.. ..++    ..++|+.|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~----~~~~L~~L~L~~  108 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV-QELL----VGPSIETLHAAN  108 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEE-EEEE----ECTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcC-CCCC----CCCCcCEEECcC
Confidence            4555555555555443 344555555555555554333222 44555555555555422 1111    113444444444


Q ss_pred             CCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhccc
Q 006695          157 CKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSIC  235 (635)
Q Consensus       157 ~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~  235 (635)
                      |.                       .....+..+++|+.|++++|.++.+ |..++.+++|+.|+|++|.+.+..|..+.
T Consensus       109 N~-----------------------l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  165 (487)
T 3oja_A          109 NN-----------------------ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA  165 (487)
T ss_dssp             SC-----------------------CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG
T ss_pred             Cc-----------------------CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh
Confidence            32                       2111222234566666666666655 33456666666666666666665555554


Q ss_pred             -CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc
Q 006695          236 -KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI  314 (635)
Q Consensus       236 -~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l  314 (635)
                       .+++|+.|+|++|.+.+..  ....+++|+.|+|++|.++.+|..+.          .+++|+.|+|++|.+..+|..+
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~----------~l~~L~~L~Ls~N~l~~lp~~l  233 (487)
T 3oja_A          166 ASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQ----------SAAGVTWISLRNNKLVLIEKAL  233 (487)
T ss_dssp             GGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGG----------GGTTCSEEECTTSCCCEECTTC
T ss_pred             hhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHhHc----------CCCCccEEEecCCcCcccchhh
Confidence             4666666666666554431  12245666666666666665554432          2355666666666666666556


Q ss_pred             cCCCCccEEeccCCCCC
Q 006695          315 TQLSQLRSLHLKDCSML  331 (635)
Q Consensus       315 ~~l~~L~~L~L~~n~~l  331 (635)
                      ..+++|+.|++++|++.
T Consensus       234 ~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          234 RFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             CCCTTCCEEECTTCCBC
T ss_pred             ccCCCCCEEEcCCCCCc
Confidence            66666666666665554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.87  E-value=1.6e-23  Score=216.16  Aligned_cols=244  Identities=20%  Similarity=0.219  Sum_probs=116.3

Q ss_pred             CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCC-CCCCC-CC-------CCCCCCEEeecCCCCCcccCccc--cC
Q 006695           77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYL-IRMPD-LS-------ETPNLERTNLKNCINLTCVPSSV--QN  145 (635)
Q Consensus        77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~-~~~p~-l~-------~l~~L~~L~L~~n~~l~~~~~~i--~~  145 (635)
                      .+|+.|++++|.+ .+|..+...  |+.|+|++|.+. ..+|+ +.       ++++|++|+|++|...+.+|..+  +.
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~  119 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT  119 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence            4455566666666 555544332  555566655542 22332 11       35555555555554444444443  44


Q ss_pred             CCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccC-----CCccEEE
Q 006695          146 FNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECL-----TNLEKLY  220 (635)
Q Consensus       146 l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l-----~~L~~L~  220 (635)
                      +++|++|++++|                                            .++.+|..++.+     ++|++|+
T Consensus       120 l~~L~~L~Ls~N--------------------------------------------~l~~~~~~~~~l~~~~~~~L~~L~  155 (312)
T 1wwl_A          120 GPDLNILNLRNV--------------------------------------------SWATRDAWLAELQQWLKPGLKVLS  155 (312)
T ss_dssp             SCCCSEEEEESC--------------------------------------------BCSSSSSHHHHHHTTCCTTCCEEE
T ss_pred             CCCccEEEccCC--------------------------------------------CCcchhHHHHHHHHhhcCCCcEEE
Confidence            555555555444                                            333333333333     4555555


Q ss_pred             eecccccccchhcccCCCCCcEEecCCCCCCCc--chhhh--cCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695          221 INRCMRLKRLSTSICKLKSLHVLVLDDCSKLER--FPEIL--EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS  296 (635)
Q Consensus       221 L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~--~~~~l--~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~  296 (635)
                      +++|.+.+..+..++.+++|++|++++|.+.+.  ++..+  ..+++|++|++++|.++.++...      ...+..+++
T Consensus       156 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------~~~~~~l~~  229 (312)
T 1wwl_A          156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC------SALAAARVQ  229 (312)
T ss_dssp             EESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHH------HHHHHTTCC
T ss_pred             eeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHH------HHHHhcCCC
Confidence            555554444444455555555555555544332  12222  44555555555555554332110      011223345


Q ss_pred             ccEEEcCCCCCCccc--ccccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccCccccCccccchhhhhhh
Q 006695          297 LRQLNLSRNDSESLP--ASITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKA  373 (635)
Q Consensus       297 L~~L~Ls~n~~~~lp--~~l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n  373 (635)
                      |+.|+|++|.++..+  ..+..+++|++|+|++|.+. .+|. .+++|++|++++|...+ +|. +..+++|+.+++++|
T Consensus       230 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~~L~~L~Ls~N~l~~-~p~-~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLSVLDLSYNRLDR-NPS-PDELPQVGNLSLKGN  306 (312)
T ss_dssp             CSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCCSEEEEEECCSSCCCS-CCC-TTTSCEEEEEECTTC
T ss_pred             CCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhccCCceEEECCCCCCCC-Chh-HhhCCCCCEEeccCC
Confidence            555555555554433  22344555555555555443 4443 22455555555554332 243 555666666666666


Q ss_pred             hhc
Q 006695          374 TFL  376 (635)
Q Consensus       374 ~~~  376 (635)
                      ++.
T Consensus       307 ~l~  309 (312)
T 1wwl_A          307 PFL  309 (312)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            553

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.87  E-value=4.3e-22  Score=218.09  Aligned_cols=234  Identities=15%  Similarity=0.140  Sum_probs=197.4

Q ss_pred             CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695           97 KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI  175 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L  175 (635)
                      ..+++|++|+|++|.+....| .++.+++|+.|+|++|...+..|  ++.+++|++|++++|. ++.+            
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l------------   95 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQEL------------   95 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEE------------
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCC------------
Confidence            345589999999998776655 58899999999999987655554  8888888888888864 2222            


Q ss_pred             ecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch
Q 006695          176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP  255 (635)
Q Consensus       176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~  255 (635)
                                 +. .++|++|++++|.++.++..  .+++|+.|++++|.+.+..|..++.+++|+.|+|++|.+.+..|
T Consensus        96 -----------~~-~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A           96 -----------LV-GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             -----------EE-CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             -----------CC-CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence                       11 16899999999999988754  57899999999999999889999999999999999999999888


Q ss_pred             hhhc-CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcC
Q 006695          256 EILE-KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSL  334 (635)
Q Consensus       256 ~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~l  334 (635)
                      ..+. .+++|+.|+|++|.++.+|..           ..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.+.+ +
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~~~~-----------~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-l  229 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDVKGQ-----------VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-I  229 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEEECC-----------CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-E
T ss_pred             HHHhhhCCcccEEecCCCcccccccc-----------ccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-c
Confidence            8776 799999999999999987542           34689999999999999999899999999999999988764 6


Q ss_pred             CCC---CCccceecccccccc-cccCccccCccccchhhhh
Q 006695          335 PEL---PQSLELLDAENCKQL-QFIPEILSGLEEVDASVLE  371 (635)
Q Consensus       335 p~l---~~sL~~L~l~~c~~l-~~~~~~~~~L~~L~~l~L~  371 (635)
                      |..   +++|+.|++++|+.. ..+|..+..++.|+.+++.
T Consensus       230 p~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          230 EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            653   478999999999887 5777888899999999887

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.1e-20  Score=191.19  Aligned_cols=219  Identities=15%  Similarity=0.165  Sum_probs=142.7

Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCc
Q 006695           60 LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLT  137 (635)
Q Consensus        60 L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~  137 (635)
                      .+..+..+..+|..+ +++|++|++++|+++.++. .+..+++|++|+|++|.+....+ .+.++++|++|++++|....
T Consensus        12 ~~c~~~~l~~ip~~l-~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           12 YQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             EECTTSCCSSCCSSS-CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EEecCCCccccCCCC-CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            444555566666654 2567888888888877765 56777788888888777554444 36777777777777776555


Q ss_pred             ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCc-ccccCCCc
Q 006695          138 CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SIECLTNL  216 (635)
Q Consensus       138 ~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L  216 (635)
                      ..+..+..+++|++|++++|.                                            ++.++. .++.+++|
T Consensus        91 ~~~~~~~~l~~L~~L~l~~n~--------------------------------------------l~~~~~~~~~~l~~L  126 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVETN--------------------------------------------LASLENFPIGHLKTL  126 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTSC--------------------------------------------CCCSTTCCCTTCTTC
T ss_pred             cChhhhcCCccccEEECCCCC--------------------------------------------ccccCchhcccCCCC
Confidence            555566666666666666543                                            222222 24555666


Q ss_pred             cEEEeeccccccc-chhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCC----EEEecCCCccccCchhcccccchhhc
Q 006695          217 EKLYINRCMRLKR-LSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVK----CISLERTAITELPSSFANLEGLKDLY  291 (635)
Q Consensus       217 ~~L~L~~n~~~~~-lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~----~L~L~~n~l~~lp~~~~~l~~L~~l~  291 (635)
                      ++|++++|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++|+    .|++++|.++.++...          
T Consensus       127 ~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~----------  196 (276)
T 2z62_A          127 KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA----------  196 (276)
T ss_dssp             CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTS----------
T ss_pred             CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccc----------
Confidence            6666666655442 455666666666666666666655555555555555    7888888888776543          


Q ss_pred             cCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCc
Q 006695          292 IGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSS  333 (635)
Q Consensus       292 ~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~  333 (635)
                      ....+|+.|+|++|.++.+|.. +..+++|++|+|++|++...
T Consensus       197 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  239 (276)
T 2z62_A          197 FKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  239 (276)
T ss_dssp             SCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred             cCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence            2234788888888888888765 47788888888888776543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=3.6e-20  Score=188.88  Aligned_cols=200  Identities=19%  Similarity=0.188  Sum_probs=139.2

Q ss_pred             CCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEE
Q 006695           97 KRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKI  175 (635)
Q Consensus        97 ~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L  175 (635)
                      .++++|+.++++++.+. .+| ++.  ++|+.|+|++|......+..+..+++|+.|++++|. ++.++..         
T Consensus         7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~---------   73 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD---------   73 (290)
T ss_dssp             ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC---------
T ss_pred             cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC---------
Confidence            34445555555555433 222 222  455666666665554455566666666666666654 2222211         


Q ss_pred             ecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcch
Q 006695          176 DFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFP  255 (635)
Q Consensus       176 ~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~  255 (635)
                                  ..+++|++|++++|.++.+|..+..+++|++|++++|.+.+..+..|.++++|++|+|++|.+.+..+
T Consensus        74 ------------~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~  141 (290)
T 1p9a_G           74 ------------GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPP  141 (290)
T ss_dssp             ------------SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             ------------CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccCh
Confidence                        12345677777777788888888888889999999888887777778888889999998888877777


Q ss_pred             hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          256 EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       256 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      ..|..+++|+.|++++|+|+.+|..+         +..+++|+.|+|++|+++.+|..+..+.+|+.|+|++|+.
T Consensus       142 ~~~~~l~~L~~L~L~~N~l~~l~~~~---------~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          142 GLLTPTPKLEKLSLANNNLTELPAGL---------LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             TTTTTCTTCCEEECTTSCCSCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             hhcccccCCCEEECCCCcCCccCHHH---------hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence            77888888888888888888887632         3456788888888888888888877777788777777654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=2.3e-19  Score=180.85  Aligned_cols=111  Identities=21%  Similarity=0.285  Sum_probs=64.2

Q ss_pred             ccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhh
Q 006695          211 ECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDL  290 (635)
Q Consensus       211 ~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l  290 (635)
                      ..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..         .
T Consensus       106 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------~  176 (270)
T 2o6q_A          106 DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEG---------A  176 (270)
T ss_dssp             TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------T
T ss_pred             ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChh---------H
Confidence            4445555555555555444444455556666666666555544444556666666666666666665542         1


Q ss_pred             ccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695          291 YIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       291 ~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~  330 (635)
                      +..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            23346666666666666666543 56666777777766654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=5e-19  Score=178.42  Aligned_cols=197  Identities=17%  Similarity=0.182  Sum_probs=111.9

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCI  134 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~  134 (635)
                      .+.++++++.++.+|..+. .+|++|++++|+++.++. .+..+++|++|+|++|.+....+. +..+++|++|++++|.
T Consensus        18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~   96 (270)
T 2o6q_A           18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK   96 (270)
T ss_dssp             TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence            5566666666666665543 466677777776666653 456666667777666664433332 4556666666666664


Q ss_pred             CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCc-ccccC
Q 006695          135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SIECL  213 (635)
Q Consensus       135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l  213 (635)
                      .....+..+..+++|++|++++|                                            .++.++. .++.+
T Consensus        97 l~~~~~~~~~~l~~L~~L~l~~n--------------------------------------------~l~~~~~~~~~~l  132 (270)
T 2o6q_A           97 LQALPIGVFDQLVNLAELRLDRN--------------------------------------------QLKSLPPRVFDSL  132 (270)
T ss_dssp             CCCCCTTTTTTCSSCCEEECCSS--------------------------------------------CCCCCCTTTTTTC
T ss_pred             CCcCCHhHcccccCCCEEECCCC--------------------------------------------ccCeeCHHHhCcC
Confidence            43333333445555555555443                                            3333332 24555


Q ss_pred             CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccC
Q 006695          214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIG  293 (635)
Q Consensus       214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~  293 (635)
                      ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..         .+..
T Consensus       133 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------~~~~  203 (270)
T 2o6q_A          133 TKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG---------AFDS  203 (270)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------TTTT
T ss_pred             cCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH---------Hhcc
Confidence            5555555555555544444455566666666666655555555566666666666666666665542         1234


Q ss_pred             CCCccEEEcCCCCC
Q 006695          294 GSSLRQLNLSRNDS  307 (635)
Q Consensus       294 ~~~L~~L~Ls~n~~  307 (635)
                      +++|+.|+|++|.+
T Consensus       204 l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          204 LEKLKMLQLQENPW  217 (270)
T ss_dssp             CTTCCEEECCSSCB
T ss_pred             ccCCCEEEecCCCe
Confidence            46666677766664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.9e-19  Score=188.72  Aligned_cols=233  Identities=23%  Similarity=0.323  Sum_probs=148.8

Q ss_pred             eEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCCCCC--CCCCCCCCEEe-ecCC
Q 006695           58 RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERTN-LKNC  133 (635)
Q Consensus        58 ~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p~--l~~l~~L~~L~-L~~n  133 (635)
                      +.++.+++.++++|..+ ++++++|+|++|+|+.+|.+ +.++++|++|+|++|++...+|.  |.++++|+++. +.+|
T Consensus        12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CEEEecCCCCCccCcCc-CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            56777888888999876 46899999999999999864 79999999999999998776663  78899888754 4455


Q ss_pred             CCCcccCccccCCCCCCEEeecCCCCCCccCCCC--CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-c
Q 006695          134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL--HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-I  210 (635)
Q Consensus       134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~  210 (635)
                      ......|..|..+++|++|++++|+ +..+|...  ....+..+++.++..                    +..+|.. +
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~--------------------i~~l~~~~f  149 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNIN--------------------IHTIERNSF  149 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTT--------------------CCEECTTSS
T ss_pred             cccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccc--------------------cccccccch
Confidence            4444446778999999999998875 44444322  334444555544444                    4444432 3


Q ss_pred             ccC-CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchh-hhcCCCCCCEEEecCCCccccCchhcccccch
Q 006695          211 ECL-TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPE-ILEKMESVKCISLERTAITELPSSFANLEGLK  288 (635)
Q Consensus       211 ~~l-~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~-~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~  288 (635)
                      ..+ ..++.|++++|.+.. ++.......+|+.|++++++.++.+|. .|..+++|+.|++++|+|+.+|..        
T Consensus       150 ~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--------  220 (350)
T 4ay9_X          150 VGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--------  220 (350)
T ss_dssp             TTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--------
T ss_pred             hhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--------
Confidence            333 246666676666543 333333455667777766555555553 456666666666666666666642        


Q ss_pred             hhccCCCCccEEEcCCCC-CCcccccccCCCCccEEecc
Q 006695          289 DLYIGGSSLRQLNLSRND-SESLPASITQLSQLRSLHLK  326 (635)
Q Consensus       289 ~l~~~~~~L~~L~Ls~n~-~~~lp~~l~~l~~L~~L~L~  326 (635)
                          .+.+|+.|.+.++. ++.+| .+..+++|+.+++.
T Consensus       221 ----~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          221 ----GLENLKKLRARSTYNLKKLP-TLEKLVALMEASLT  254 (350)
T ss_dssp             ----SCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECS
T ss_pred             ----hhccchHhhhccCCCcCcCC-CchhCcChhhCcCC
Confidence                12344444443332 44454 24455555555544

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.82  E-value=3.4e-19  Score=180.11  Aligned_cols=217  Identities=19%  Similarity=0.199  Sum_probs=146.3

Q ss_pred             EEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCC
Q 006695           81 KLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKS  159 (635)
Q Consensus        81 ~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~  159 (635)
                      ..+..+.++..+|..+.  ++|++|++++|.+....+ .+.++++|++|++++|......+..+..+++|++|++++   
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~---   85 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG---   85 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT---
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC---
Confidence            45556666777776553  467777777777554444 466677777777777644443333455555555555544   


Q ss_pred             CCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCC
Q 006695          160 LRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLK  238 (635)
Q Consensus       160 l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~  238 (635)
                                                               |.++.++ ..+.++++|++|++++|.+.+..+..+..++
T Consensus        86 -----------------------------------------n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  124 (276)
T 2z62_A           86 -----------------------------------------NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK  124 (276)
T ss_dssp             -----------------------------------------CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCT
T ss_pred             -----------------------------------------CccCccChhhhcCCccccEEECCCCCccccCchhcccCC
Confidence                                                     4444444 4578889999999999988877776788899


Q ss_pred             CCcEEecCCCCCCC-cchhhhcCCCCCCEEEecCCCccccCc-hhcccccchhhccCCCCcc-EEEcCCCCCCccccccc
Q 006695          239 SLHVLVLDDCSKLE-RFPEILEKMESVKCISLERTAITELPS-SFANLEGLKDLYIGGSSLR-QLNLSRNDSESLPASIT  315 (635)
Q Consensus       239 ~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~l~~~~~~L~-~L~Ls~n~~~~lp~~l~  315 (635)
                      +|++|++++|.+.+ .+|..+..+++|+.|++++|.++.++. .+..+.       .++.|. .|++++|.++.++....
T Consensus       125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-------~L~~l~l~L~ls~n~l~~~~~~~~  197 (276)
T 2z62_A          125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH-------QMPLLNLSLDLSLNPMNFIQPGAF  197 (276)
T ss_dssp             TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHH-------TCTTCCEEEECCSSCCCEECTTSS
T ss_pred             CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhh-------hccccceeeecCCCcccccCcccc
Confidence            99999999988876 368888999999999999999887763 333321       223333 78888888888877666


Q ss_pred             CCCCccEEeccCCCCCCcCCCC---CCccceecccccc
Q 006695          316 QLSQLRSLHLKDCSMLSSLPEL---PQSLELLDAENCK  350 (635)
Q Consensus       316 ~l~~L~~L~L~~n~~l~~lp~l---~~sL~~L~l~~c~  350 (635)
                      ...+|++|++++|.+.+..+..   .++|+.|++++|+
T Consensus       198 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          198 KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             CCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence            6667888888887654333222   3455666666554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=3e-20  Score=187.63  Aligned_cols=118  Identities=18%  Similarity=0.241  Sum_probs=64.6

Q ss_pred             ccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc
Q 006695          234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS  313 (635)
Q Consensus       234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~  313 (635)
                      +..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|...         +..+++|+.|++++|+++.+|..
T Consensus       129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---------~~~l~~L~~L~L~~N~l~~~~~~  199 (272)
T 3rfs_A          129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV---------FDKLTQLKDLRLYQNQLKSVPDG  199 (272)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCTTCCEEECCSSCCSCCCTT
T ss_pred             hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH---------hcCCccCCEEECCCCcCCccCHH
Confidence            344444444444444444333344445555555555555555444321         23345566666666665555443


Q ss_pred             -ccCCCCccEEeccCCCCCCcCCCCCCccceecccccccccccCccccCccc
Q 006695          314 -ITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIPEILSGLEE  364 (635)
Q Consensus       314 -l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~c~~l~~~~~~~~~L~~  364 (635)
                       +..+++|++|++++|+.....    ++|+.|++++|...+.+|..+..+..
T Consensus       200 ~~~~l~~L~~L~l~~N~~~~~~----~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          200 VFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TTTTCTTCCEEECCSSCBCCCT----TTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             HHhCCcCCCEEEccCCCccccC----cHHHHHHHHHHhCCCcccCcccccCC
Confidence             466677777777776655443    35677777777766677766665443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.82  E-value=6.9e-20  Score=184.98  Aligned_cols=226  Identities=16%  Similarity=0.140  Sum_probs=147.9

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINL  136 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l  136 (635)
                      +..+.+.++.+..+.....+++|+.|++++|.++.++ ++..+++|++|++++|.+. .++.+..+++|++|++++|...
T Consensus        21 l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~   98 (272)
T 3rfs_A           21 TIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQ   98 (272)
T ss_dssp             HHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCC
T ss_pred             HHHHHhcCcccccccccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccC
Confidence            3344444444433322224555666666666655543 3555556666666655532 2344555555555555555333


Q ss_pred             cccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccCCC
Q 006695          137 TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECLTN  215 (635)
Q Consensus       137 ~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~  215 (635)
                      +..+..++.+++|                                            ++|++++|.++.++.. ++.+++
T Consensus        99 ~~~~~~~~~l~~L--------------------------------------------~~L~L~~n~l~~~~~~~~~~l~~  134 (272)
T 3rfs_A           99 SLPNGVFDKLTNL--------------------------------------------KELVLVENQLQSLPDGVFDKLTN  134 (272)
T ss_dssp             CCCTTTTTTCTTC--------------------------------------------CEEECTTSCCCCCCTTTTTTCTT
T ss_pred             ccChhHhcCCcCC--------------------------------------------CEEECCCCcCCccCHHHhccCCC
Confidence            3222233344444                                            4444444445555443 678889


Q ss_pred             ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695          216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS  295 (635)
Q Consensus       216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~  295 (635)
                      |++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..         .+..++
T Consensus       135 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------~~~~l~  205 (272)
T 3rfs_A          135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDG---------VFDRLT  205 (272)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT---------TTTTCT
T ss_pred             CCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHH---------HHhCCc
Confidence            99999999988877777788899999999999988877777788999999999999999987753         235568


Q ss_pred             CccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccce
Q 006695          296 SLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLEL  343 (635)
Q Consensus       296 ~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~  343 (635)
                      +|+.|++++|.+.      ..+++|+.|++..|.+.+.+|....++..
T Consensus       206 ~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          206 SLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             TCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             CCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence            8999999999764      34668888999998888888876655544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.82  E-value=1.3e-21  Score=219.76  Aligned_cols=350  Identities=14%  Similarity=0.092  Sum_probs=195.9

Q ss_pred             cCCCCCcEEEeecCCCCCCcccceeeecCCcccC-CCccceEeecCCCCCC---CCCCCC-CCCCceEEEcCCCCCccc-
Q 006695           19 ANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEY-LPNELRYLHWHEYPSK---ALPFDF-EPENLVKLNLPYSKVVQI-   92 (635)
Q Consensus        19 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~-l~~~L~~L~l~~~~l~---~lp~~~-~l~~L~~L~L~~n~l~~l-   92 (635)
                      ..+++|+.|+|++|.+++.        .+..+.. .+.+|++|++.+|...   .++... .+++|++|+|++|.+... 
T Consensus       109 ~~~~~L~~L~L~~~~i~~~--------~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~  180 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDL--------DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD  180 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHH--------HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC
T ss_pred             hhCCCCCeEEeeccEecHH--------HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc
Confidence            3789999999998866511        1111211 2334888888777521   111111 467888888888876532 


Q ss_pred             ----cccCCCCCCCcEEEccCCCCCCC----CCC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCc-
Q 006695           93 ----WEGKKRAFKLKYVDIHNSQYLIR----MPD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRS-  162 (635)
Q Consensus        93 ----~~~~~~l~~L~~L~Ls~n~~~~~----~p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~-  162 (635)
                          +.....+++|++|++++|.+...    ++. +.++++|+.|++++|.. ..++..+..+++|+.|+++++..... 
T Consensus       181 ~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~~~~~~~~  259 (592)
T 3ogk_B          181 GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGSLNEDIGM  259 (592)
T ss_dssp             SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECBCCCCTTC
T ss_pred             hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccccccccch
Confidence                22345677888888888875421    111 45678888888888743 34666777778888888865332211 


Q ss_pred             --cCCCC-CCCCCcEEecCCCCCCCccCc---ccCCcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcc
Q 006695          163 --FPSNL-HFMSPIKIDFSSCFNLTEFPQ---ISGNITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSI  234 (635)
Q Consensus       163 --lp~~~-~l~~L~~L~l~~c~~l~~~p~---~~~~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~  234 (635)
                        .+..+ .+++|+.++++++ ....+|.   ..++|++|++++|.++.  ++..+..+++|++|+++++...+.++..+
T Consensus       260 ~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~  338 (592)
T 3ogk_B          260 PEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA  338 (592)
T ss_dssp             TTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHH
T ss_pred             HHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHH
Confidence              11111 5566666666653 2222332   23466667776666542  22224556666666666332222333333


Q ss_pred             cCCCCCcEEecCC----------CCCCCc--chhhhcCCCCCCEEEecCCCccc-cCchhcc-ccc--------------
Q 006695          235 CKLKSLHVLVLDD----------CSKLER--FPEILEKMESVKCISLERTAITE-LPSSFAN-LEG--------------  286 (635)
Q Consensus       235 ~~l~~L~~L~Ls~----------n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~-l~~--------------  286 (635)
                      ..+++|++|++++          |+..+.  ++.....+++|+.|+++.|.++. .+..+.. +++              
T Consensus       339 ~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          339 QYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             HHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSC
T ss_pred             HhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcc
Confidence            4455566666652          332221  22223335555555554444441 1111111 111              


Q ss_pred             ---------chhhccCCCCccEEEcCCCC--CCc-ccccc-cCCCCccEEeccCCCCCC-cCC---CCCCccceeccccc
Q 006695          287 ---------LKDLYIGGSSLRQLNLSRND--SES-LPASI-TQLSQLRSLHLKDCSMLS-SLP---ELPQSLELLDAENC  349 (635)
Q Consensus       287 ---------L~~l~~~~~~L~~L~Ls~n~--~~~-lp~~l-~~l~~L~~L~L~~n~~l~-~lp---~l~~sL~~L~l~~c  349 (635)
                               ++....++++|+.|++++|.  ++. .+..+ ..+++|++|+|++|++.. .++   ...++|+.|++++|
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence                     11223456888888887544  321 22223 457889999999887654 223   23578999999999


Q ss_pred             ccccc-cCccccCccccchhhhhhhhhccc
Q 006695          350 KQLQF-IPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       350 ~~l~~-~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      +.... ++.....+++|+.|+|++|++...
T Consensus       499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          499 CFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             CCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             CCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            84322 344456788899999999987655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=5.4e-19  Score=180.13  Aligned_cols=195  Identities=17%  Similarity=0.178  Sum_probs=124.6

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      ++.+++.++.++.+|..+. ++|+.|++++|.++.++ ..+..+++|++|+|++|.+.. ++..+.+++|++|++++|. 
T Consensus        12 l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~-   88 (290)
T 1p9a_G           12 HLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQ-   88 (290)
T ss_dssp             CCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSC-
T ss_pred             ccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCEEECCCCc-
Confidence            5555555555555554432 45666666666666553 345666666666666665332 2333455555555555552 


Q ss_pred             CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccccCC
Q 006695          136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLT  214 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~  214 (635)
                      +..+|..+..+++                                            |++|++++|.|+.+| ..+..++
T Consensus        89 l~~l~~~~~~l~~--------------------------------------------L~~L~l~~N~l~~l~~~~~~~l~  124 (290)
T 1p9a_G           89 LQSLPLLGQTLPA--------------------------------------------LTVLDVSFNRLTSLPLGALRGLG  124 (290)
T ss_dssp             CSSCCCCTTTCTT--------------------------------------------CCEEECCSSCCCCCCSSTTTTCT
T ss_pred             CCcCchhhccCCC--------------------------------------------CCEEECCCCcCcccCHHHHcCCC
Confidence            2233433444444                                            444444445555554 3477778


Q ss_pred             CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695          215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG  294 (635)
Q Consensus       215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~  294 (635)
                      +|++|+|++|.+.+..+..|..+++|+.|+|++|.+.+..+..+..+++|+.|++++|.++.+|..+.          ..
T Consensus       125 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~----------~~  194 (290)
T 1p9a_G          125 ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF----------GS  194 (290)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT----------TT
T ss_pred             CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc----------cc
Confidence            88888888887776666667788888888888888776666677888899999999999988887653          34


Q ss_pred             CCccEEEcCCCCCC
Q 006695          295 SSLRQLNLSRNDSE  308 (635)
Q Consensus       295 ~~L~~L~Ls~n~~~  308 (635)
                      ++|+.|+|++|.+.
T Consensus       195 ~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          195 HLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCSEEECCSCCBC
T ss_pred             ccCCeEEeCCCCcc
Confidence            68889999998864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.5e-19  Score=178.70  Aligned_cols=89  Identities=11%  Similarity=0.104  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecC-CCCCcccCcc
Q 006695           67 SKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKN-CINLTCVPSS  142 (635)
Q Consensus        67 l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~-n~~l~~~~~~  142 (635)
                      ++.+|.  -+.+|++|++++|+++.++. .+..+++|++|++++|+.++.++  .+.++++|++|++++ |......+..
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            556665  23466777777777766654 45566666666666665222222  255555566666555 3222222233


Q ss_pred             ccCCCCCCEEeecCC
Q 006695          143 VQNFNHLSMLCFEGC  157 (635)
Q Consensus       143 i~~l~~L~~L~L~~~  157 (635)
                      +..+++|+.|++++|
T Consensus       101 f~~l~~L~~L~l~~n  115 (239)
T 2xwt_C          101 LKELPLLKFLGIFNT  115 (239)
T ss_dssp             EECCTTCCEEEEEEE
T ss_pred             hCCCCCCCEEeCCCC
Confidence            444444444444443

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.9e-19  Score=177.97  Aligned_cols=205  Identities=17%  Similarity=0.231  Sum_probs=145.9

Q ss_pred             CCCCccCcccCCcceEEeccccccccCc-ccccCCCccEEEeeccc-ccccchhcccCCCCCcEEecCC-CCCCCcchhh
Q 006695          181 FNLTEFPQISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCM-RLKRLSTSICKLKSLHVLVLDD-CSKLERFPEI  257 (635)
Q Consensus       181 ~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~-~~~~lp~~~~~l~~L~~L~Ls~-n~~~~~~~~~  257 (635)
                      ..++.+|....++++|++++|.++.+|. .+.++++|++|++++|. +.+..+..|.++++|++|++++ |.+.+..+..
T Consensus        21 ~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           21 KDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             CSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             cCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            3355666644578888888888888876 57888888888888886 5555555788888888888887 6666555567


Q ss_pred             hcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCcc---EEEcCCC-CCCccccc-ccCCCCcc-EEeccCCCCC
Q 006695          258 LEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLR---QLNLSRN-DSESLPAS-ITQLSQLR-SLHLKDCSML  331 (635)
Q Consensus       258 l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~---~L~Ls~n-~~~~lp~~-l~~l~~L~-~L~L~~n~~l  331 (635)
                      |..+++|+.|++++|.++.+|. +..          +++|+   .|++++| .++.+|.. +.++++|+ +|++++|++.
T Consensus       101 f~~l~~L~~L~l~~n~l~~lp~-~~~----------l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMFPD-LTK----------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSCCC-CTT----------CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             hCCCCCCCEEeCCCCCCccccc-ccc----------ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            8888888888888888888775 433          34454   8888888 78888764 77888888 8888887665


Q ss_pred             CcCCCC---CCccceeccccccccccc-CccccCc-cccchhhhhhhhhcccccccCCccceEEEcCCccc
Q 006695          332 SSLPEL---PQSLELLDAENCKQLQFI-PEILSGL-EEVDASVLEKATFLNSAFTLNSACVKFVFSNCLKL  397 (635)
Q Consensus       332 ~~lp~l---~~sL~~L~l~~c~~l~~~-~~~~~~L-~~L~~l~L~~n~~~~~~~~l~~~~~~l~~~nC~~L  397 (635)
                       .+|..   .++|+.|++++|+.++.+ +..+..+ ++|+.+++++|++...........+.+.+.+++.|
T Consensus       170 -~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~~~l  239 (239)
T 2xwt_C          170 -SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWTL  239 (239)
T ss_dssp             -EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC---
T ss_pred             -ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCccCC
Confidence             55542   257888888888644444 4567778 88888888888877654332233366677766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.80  E-value=3.8e-20  Score=192.53  Aligned_cols=193  Identities=16%  Similarity=0.162  Sum_probs=102.1

Q ss_pred             CceEEEcCCCCCccccccCCCC--CCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcc-cCccccCCCCCCEEee
Q 006695           78 NLVKLNLPYSKVVQIWEGKKRA--FKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTC-VPSSVQNFNHLSMLCF  154 (635)
Q Consensus        78 ~L~~L~L~~n~l~~l~~~~~~l--~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~-~~~~i~~l~~L~~L~L  154 (635)
                      .++.++++++.+.  +..+..+  ++++.|++++|.+....+.+..+++|++|++++|..... ++..+..+++|++|++
T Consensus        48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L  125 (336)
T 2ast_B           48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL  125 (336)
T ss_dssp             TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence            4667777777665  3344445  677778887777666666666777888888887765444 6666777778888888


Q ss_pred             cCCCCCCccCCCC-CCCCCcEEecCCCCCCCc--cCc---ccCCcceEEeccc-cccc--cCcccccCC-CccEEEeecc
Q 006695          155 EGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTE--FPQ---ISGNITDLILSET-AIQE--VPSSIECLT-NLEKLYINRC  224 (635)
Q Consensus       155 ~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~--~p~---~~~~L~~L~L~~n-~i~~--lp~~~~~l~-~L~~L~L~~n  224 (635)
                      ++|......+..+ .+++|+.|++++|..++.  ++.   ..++|++|++++| .++.  ++..+..++ +|++|++++|
T Consensus       126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            7775433333222 455555555555543332  221   1234444444444 4432  333344444 4444444444


Q ss_pred             c--cc-ccchhcccCCCCCcEEecCCCC-CCCcchhhhcCCCCCCEEEecCC
Q 006695          225 M--RL-KRLSTSICKLKSLHVLVLDDCS-KLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       225 ~--~~-~~lp~~~~~l~~L~~L~Ls~n~-~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      .  +. +.++..+..+++|++|++++|. +.+..+..+..+++|+.|++++|
T Consensus       206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence            2  22 2233333444444444444444 22233334444444444444444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.80  E-value=4.3e-19  Score=182.51  Aligned_cols=118  Identities=18%  Similarity=0.302  Sum_probs=72.7

Q ss_pred             EEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc
Q 006695          196 LILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       196 L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      |++++|.++.++. +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+.. . +..+++|+.|++++|.++
T Consensus       112 L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          112 LDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             EECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC
T ss_pred             EECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccC
Confidence            3333334444432 5556666666666665544332  556666777777766555432 2 667777777777777777


Q ss_pred             ccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          276 ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       276 ~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      .++. +          ..+++|+.|+|++|+++.++. +..+++|+.|++++|++
T Consensus       187 ~~~~-l----------~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          187 DISP-L----------ASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             CCGG-G----------GGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEE
T ss_pred             cChh-h----------cCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCee
Confidence            6653 2          345677777777777777763 67777777777777654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=8.6e-19  Score=183.65  Aligned_cols=237  Identities=19%  Similarity=0.186  Sum_probs=140.0

Q ss_pred             eEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCc-cccCCCCCCEEeecCC
Q 006695           80 VKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPS-SVQNFNHLSMLCFEGC  157 (635)
Q Consensus        80 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~-~i~~l~~L~~L~L~~~  157 (635)
                      ++++.++++++++|.++  .+++++|+|++|++....+ .|.++++|++|+|++|...+.+|. .|.++++|+.+...++
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            45677778888888766  3577888888887544333 377777777777777766665553 3556666555443333


Q ss_pred             CCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccC
Q 006695          158 KSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICK  236 (635)
Q Consensus       158 ~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~  236 (635)
                                                                 |+++.++ ..+..+++|++|++++|.+....+..+..
T Consensus        90 -------------------------------------------N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~  126 (350)
T 4ay9_X           90 -------------------------------------------NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH  126 (350)
T ss_dssp             -------------------------------------------TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC
T ss_pred             -------------------------------------------CcccccCchhhhhccccccccccccccccCCchhhcc
Confidence                                                       3333332 23555556666666665555444444445


Q ss_pred             CCCCcEEecCCCCCCCcch-hhhcCCC-CCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCC-CCCCccccc
Q 006695          237 LKSLHVLVLDDCSKLERFP-EILEKME-SVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSR-NDSESLPAS  313 (635)
Q Consensus       237 l~~L~~L~Ls~n~~~~~~~-~~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~-n~~~~lp~~  313 (635)
                      ..++..|++.++.....++ ..|..+. .++.|++++|+|+++|...          ....+|++|++++ |.++.+|..
T Consensus       127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~----------f~~~~L~~l~l~~~n~l~~i~~~  196 (350)
T 4ay9_X          127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSA----------FNGTQLDELNLSDNNNLEELPND  196 (350)
T ss_dssp             BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTS----------STTEEEEEEECTTCTTCCCCCTT
T ss_pred             cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhh----------ccccchhHHhhccCCcccCCCHH
Confidence            5555566665544443333 2344443 4666777777777666543          2235667777764 556777653


Q ss_pred             -ccCCCCccEEeccCCCCCCcCCC-CCCccceecccccccccccCccccCccccchhhhhhh
Q 006695          314 -ITQLSQLRSLHLKDCSMLSSLPE-LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKA  373 (635)
Q Consensus       314 -l~~l~~L~~L~L~~n~~l~~lp~-l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n  373 (635)
                       ++.+++|++|+|++|++ +.+|. .+.+|+.|.+.+|..++.+|. +..+++|+.+++..+
T Consensus       197 ~f~~l~~L~~LdLs~N~l-~~lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          197 VFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTTEECCSEEECTTSCC-CCCCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCH
T ss_pred             HhccCcccchhhcCCCCc-CccChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCCC
Confidence             46777777777777643 34443 456777777777766766663 566666666665433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.79  E-value=3.2e-19  Score=183.64  Aligned_cols=220  Identities=16%  Similarity=0.120  Sum_probs=105.1

Q ss_pred             CCceEEEcCCCCCcc--ccc--cCCCCCCCcEEEccCCCCCCCCCC-C--CCCCCCCEEeecCCCCCcccC----ccccC
Q 006695           77 ENLVKLNLPYSKVVQ--IWE--GKKRAFKLKYVDIHNSQYLIRMPD-L--SETPNLERTNLKNCINLTCVP----SSVQN  145 (635)
Q Consensus        77 ~~L~~L~L~~n~l~~--l~~--~~~~l~~L~~L~Ls~n~~~~~~p~-l--~~l~~L~~L~L~~n~~l~~~~----~~i~~  145 (635)
                      ..++.|.+.++.+..  +..  ....+++|++|++++|.+....|. +  ..+++|++|+|++|...+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            346667777666542  111  112345577777777776666653 4  667777777777776554333    23345


Q ss_pred             CCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccc---cC--cccccCCCccEE
Q 006695          146 FNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQE---VP--SSIECLTNLEKL  219 (635)
Q Consensus       146 l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~---lp--~~~~~l~~L~~L  219 (635)
                      +++|++|++++|......+..+ .+++                     |++|+|++|.+..   ++  ..++.+++|++|
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~---------------------L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L  202 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPA---------------------LTSLDLSDNPGLGERGLMAALCPHKFPAIQNL  202 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTT---------------------CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCC---------------------CCEEECCCCCCccchhhhHHHhhhcCCCCCEE
Confidence            6666666666654322222211 2222                     2333333333221   11  112344445555


Q ss_pred             Eeeccccccc--chh-cccCCCCCcEEecCCCCCCCcchhhhcCC---CCCCEEEecCCCccccCchhcccccchhhccC
Q 006695          220 YINRCMRLKR--LST-SICKLKSLHVLVLDDCSKLERFPEILEKM---ESVKCISLERTAITELPSSFANLEGLKDLYIG  293 (635)
Q Consensus       220 ~L~~n~~~~~--lp~-~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l---~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~  293 (635)
                      ++++|.+...  .+. .+..+++|++|+|++|.+.+..|..+..+   ++|++|++++|+|+.+|..+            
T Consensus       203 ~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~------------  270 (310)
T 4glp_A          203 ALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL------------  270 (310)
T ss_dssp             BCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC------------
T ss_pred             ECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh------------
Confidence            5555444211  111 12344555555555555444444444333   35555555555555554422            


Q ss_pred             CCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          294 GSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       294 ~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      .++|+.|+|++|+++.+|. +..+++|+.|+|++|++
T Consensus       271 ~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          271 PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTT
T ss_pred             cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCC
Confidence            1455555555555555443 44455555555555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.9e-18  Score=177.74  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=69.4

Q ss_pred             CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      +|++|++++|.++.++. +..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.|++++
T Consensus       130 ~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~  204 (308)
T 1h6u_A          130 NLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN  204 (308)
T ss_dssp             TCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTT
T ss_pred             CCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccC
Confidence            34444444444555544 5666777777777776654333  6677777777777776655433  67777888888888


Q ss_pred             CCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc
Q 006695          272 TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI  314 (635)
Q Consensus       272 n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l  314 (635)
                      |.++.++. +          ..+++|+.|++++|.++..|..+
T Consensus       205 N~l~~~~~-l----------~~l~~L~~L~l~~N~i~~~~~~~  236 (308)
T 1h6u_A          205 NQISDVSP-L----------ANTSNLFIVTLTNQTITNQPVFY  236 (308)
T ss_dssp             SCCCBCGG-G----------TTCTTCCEEEEEEEEEECCCEEC
T ss_pred             CccCcccc-c----------cCCCCCCEEEccCCeeecCCeee
Confidence            87777653 2          44577888888888877766543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.78  E-value=1.4e-20  Score=211.41  Aligned_cols=335  Identities=13%  Similarity=0.039  Sum_probs=238.5

Q ss_pred             eeecCCCcccccChh----hhcCCCCCcEEEeecCCCCCCcccceeee-cCCcccCCCccceEeecCCCCCCCCCC----
Q 006695            2 FLDLSKITSIHLSPQ----AFANMPNLRFLKFYMPEHNGVPIMISKVH-LDQGLEYLPNELRYLHWHEYPSKALPF----   72 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~----~f~~l~~L~~L~L~~n~l~~~~~~~~~~~-l~~~l~~l~~~L~~L~l~~~~l~~lp~----   72 (635)
                      +|+++++..  +...    ...++++|+.|+|++|.+++..     .. ++..+..++ +|++|+++++.+..+..    
T Consensus       142 ~L~L~~~~~--~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~-----~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~  213 (592)
T 3ogk_B          142 TLKLDKCSG--FTTDGLLSIVTHCRKIKTLLMEESSFSEKD-----GKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLE  213 (592)
T ss_dssp             EEEEESCEE--EEHHHHHHHHHHCTTCSEEECTTCEEECCC-----SHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHH
T ss_pred             EEECcCCCC--cCHHHHHHHHhhCCCCCEEECccccccCcc-----hhHHHHHHhcCC-CccEEEeeccCCCccCHHHHH
Confidence            578887752  2222    2348999999999998765211     11 122223344 49999999998874432    


Q ss_pred             -CC-CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCC----CCCCCCCCCCCEEeecCCCCCcccCccccCC
Q 006695           73 -DF-EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR----MPDLSETPNLERTNLKNCINLTCVPSSVQNF  146 (635)
Q Consensus        73 -~~-~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~----~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l  146 (635)
                       .+ .+++|++|++++|.+..++..+..+++|+.|++++......    ...+..+++|+.|+++++ ....+|..+..+
T Consensus       214 ~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~  292 (592)
T 3ogk_B          214 TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFA  292 (592)
T ss_dssp             HHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGG
T ss_pred             HHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhc
Confidence             22 57999999999999999998889999999999986433311    124788899999999986 556778888899


Q ss_pred             CCCCEEeecCCCCCCccC-C-CCCCCCCcEEecCCCCCCCccC---cccCCcceEEecc-----------ccccc--cCc
Q 006695          147 NHLSMLCFEGCKSLRSFP-S-NLHFMSPIKIDFSSCFNLTEFP---QISGNITDLILSE-----------TAIQE--VPS  208 (635)
Q Consensus       147 ~~L~~L~L~~~~~l~~lp-~-~~~l~~L~~L~l~~c~~l~~~p---~~~~~L~~L~L~~-----------n~i~~--lp~  208 (635)
                      ++|++|++++|....... . ...+++|+.|+++++-.-..++   ...++|++|++++           +.++.  ++.
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~  372 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIA  372 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHH
Confidence            999999999988322211 1 1278999999998432111222   2347899999993           56653  334


Q ss_pred             ccccCCCccEEEeecccccccchhcccC-CCCCcEEecCC---CCCCCc------chhhhcCCCCCCEEEecCCC--ccc
Q 006695          209 SIECLTNLEKLYINRCMRLKRLSTSICK-LKSLHVLVLDD---CSKLER------FPEILEKMESVKCISLERTA--ITE  276 (635)
Q Consensus       209 ~~~~l~~L~~L~L~~n~~~~~lp~~~~~-l~~L~~L~Ls~---n~~~~~------~~~~l~~l~~L~~L~L~~n~--l~~  276 (635)
                      ....+++|++|+++.+.+.+..+..++. +++|+.|++++   |+..+.      ++..+..+++|+.|++++|.  ++.
T Consensus       373 l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~  452 (592)
T 3ogk_B          373 LAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD  452 (592)
T ss_dssp             HHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred             HHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence            4567899999999888887776666665 89999999973   333333      44557789999999997643  442


Q ss_pred             cCchhcccccchhhccCCCCccEEEcCCCCCCc--ccccccCCCCccEEeccCCCCCCc-CCC---CCCccceecccccc
Q 006695          277 LPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES--LPASITQLSQLRSLHLKDCSMLSS-LPE---LPQSLELLDAENCK  350 (635)
Q Consensus       277 lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~--lp~~l~~l~~L~~L~L~~n~~l~~-lp~---l~~sL~~L~l~~c~  350 (635)
                      -.        +......+++|+.|+|++|+++.  ++..+..+++|++|+|++|++... ++.   ..++|+.|++++|.
T Consensus       453 ~~--------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          453 LG--------LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HH--------HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred             HH--------HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence            10        11122346899999999999864  566678899999999999996432 332   35899999999998


Q ss_pred             ccc
Q 006695          351 QLQ  353 (635)
Q Consensus       351 ~l~  353 (635)
                      ...
T Consensus       525 it~  527 (592)
T 3ogk_B          525 ASM  527 (592)
T ss_dssp             CCT
T ss_pred             CCH
Confidence            443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=7.3e-21  Score=213.61  Aligned_cols=367  Identities=14%  Similarity=0.110  Sum_probs=214.0

Q ss_pred             ChhhhcCCCCCcEEEeecCCCCCCcccceeeec-CCc------------ccCCCccceEeecCCCCCCCCCC-CC--CCC
Q 006695           14 SPQAFANMPNLRFLKFYMPEHNGVPIMISKVHL-DQG------------LEYLPNELRYLHWHEYPSKALPF-DF--EPE   77 (635)
Q Consensus        14 ~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~~------------l~~l~~~L~~L~l~~~~l~~lp~-~~--~l~   77 (635)
                      +...+.++++|+.|+++++...      ....+ +..            ....+ +|++|+++++.+..... .+  .++
T Consensus        58 ~~~~~~~~~~L~~L~L~~~~~~------~~~~l~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~  130 (594)
T 2p1m_B           58 PATVIRRFPKVRSVELKGKPHF------ADFNLVPDGWGGYVYPWIEAMSSSYT-WLEEIRLKRMVVTDDCLELIAKSFK  130 (594)
T ss_dssp             HHHHHHHCTTCCEEEEECSCGG------GGGTCSCTTSCCBCHHHHHHHHHHCT-TCCEEEEESCBCCHHHHHHHHHHCT
T ss_pred             HHHHHhhCCCceEEeccCCCch------hhcccccccccchhhHHHHHHHHhCC-CCCeEEeeCcEEcHHHHHHHHHhCC
Confidence            3456777888888888875321      00000 100            11233 47888887776532211 12  356


Q ss_pred             CceEEEcCCC-CCcc--ccccCCCCCCCcEEEccCCCCCCCC----CC-CCCCCCCCEEeecCCC--CC-cccCccccCC
Q 006695           78 NLVKLNLPYS-KVVQ--IWEGKKRAFKLKYVDIHNSQYLIRM----PD-LSETPNLERTNLKNCI--NL-TCVPSSVQNF  146 (635)
Q Consensus        78 ~L~~L~L~~n-~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~----p~-l~~l~~L~~L~L~~n~--~l-~~~~~~i~~l  146 (635)
                      +|++|++++| .+..  ++.....+++|++|+|++|.+....    +. ...+++|++|++++|.  .. ..++..+..+
T Consensus       131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~  210 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC  210 (594)
T ss_dssp             TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred             CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence            7888888777 4543  4444456778888888877643322    12 2356788888887774  11 1122223456


Q ss_pred             CCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCC-------------------CCCCc-----------cCc---ccCC
Q 006695          147 NHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSC-------------------FNLTE-----------FPQ---ISGN  192 (635)
Q Consensus       147 ~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c-------------------~~l~~-----------~p~---~~~~  192 (635)
                      ++|+.|++++|..++.++..+ .+++|+.|++++|                   ..++.           ++.   ..++
T Consensus       211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~  290 (594)
T 2p1m_B          211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSR  290 (594)
T ss_dssp             TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTT
T ss_pred             CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCC
Confidence            778888887775444443333 5566666664433                   22221           222   2367


Q ss_pred             cceEEeccccccc--cCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCC--------CCC-Ccchhh-hcC
Q 006695          193 ITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDC--------SKL-ERFPEI-LEK  260 (635)
Q Consensus       193 L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n--------~~~-~~~~~~-l~~  260 (635)
                      |++|++++|.++.  ++..+..+++|++|++++|.....++.....+++|++|++++|        ... ...... ...
T Consensus       291 L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~  370 (594)
T 2p1m_B          291 LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMG  370 (594)
T ss_dssp             CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHH
T ss_pred             CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHh
Confidence            8888888887663  3333567888888888887222223333345788888888432        222 211222 234


Q ss_pred             CCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcC--C----CCCCccc------ccccCCCCccEEeccCC
Q 006695          261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLS--R----NDSESLP------ASITQLSQLRSLHLKDC  328 (635)
Q Consensus       261 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls--~----n~~~~lp------~~l~~l~~L~~L~L~~n  328 (635)
                      +++|+.|.+..|.++....        ..+...+++|+.|+++  +    +.++..|      ..+..+++|++|+|++ 
T Consensus       371 ~~~L~~L~~~~~~l~~~~~--------~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-  441 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAAL--------ITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-  441 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHH--------HHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-
T ss_pred             chhHHHHHHhcCCcCHHHH--------HHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-
Confidence            7888888887777763211        1112246889999998  4    4466443      2256788999999976 


Q ss_pred             CCCCcCCC----CCCccceecccccccccccCccc-cCccccchhhhhhhhhcccccc----cCCccceEEEcCCcc
Q 006695          329 SMLSSLPE----LPQSLELLDAENCKQLQFIPEIL-SGLEEVDASVLEKATFLNSAFT----LNSACVKFVFSNCLK  396 (635)
Q Consensus       329 ~~l~~lp~----l~~sL~~L~l~~c~~l~~~~~~~-~~L~~L~~l~L~~n~~~~~~~~----l~~~~~~l~~~nC~~  396 (635)
                      .+....+.    ..++|+.|++++|.........+ ..+++|+.|+|++|++......    .....+.+++.+|..
T Consensus       442 ~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          442 LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            33322211    25789999999987543333233 5678899999999988443211    112348899999965

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=3.2e-20  Score=197.22  Aligned_cols=251  Identities=14%  Similarity=0.124  Sum_probs=156.4

Q ss_pred             ceEeecCCCCCCCCCCCC-CCCCceEEEcCCCCCcc-----ccccCCCCCCCcEEEccCCCCC---CCCC-C-------C
Q 006695           57 LRYLHWHEYPSKALPFDF-EPENLVKLNLPYSKVVQ-----IWEGKKRAFKLKYVDIHNSQYL---IRMP-D-------L  119 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~~~---~~~p-~-------l  119 (635)
                      |++..+....+..++..+ .+++|++|+|++|.+..     ++..+..+++|++|+|++|.+.   ..+| .       +
T Consensus        11 L~~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l   90 (386)
T 2ca6_A           11 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQAL   90 (386)
T ss_dssp             CEESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHH
Confidence            444444444444454444 46677888888877763     3345667777788877776422   2223 1       2


Q ss_pred             CCCCCCCEEeecCCCCCc----ccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCccc-----
Q 006695          120 SETPNLERTNLKNCINLT----CVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQIS-----  190 (635)
Q Consensus       120 ~~l~~L~~L~L~~n~~l~----~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~-----  190 (635)
                      ..+++|++|+|++|....    .++..+..+++|++|++++|......+.                   .++..+     
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~-------------------~l~~~l~~l~~  151 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-------------------KIARALQELAV  151 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH-------------------HHHHHHHHHHH
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH-------------------HHHHHHHHHhh
Confidence            566777777777775554    3555666677777777766543211000                   011111     


Q ss_pred             -------CCcceEEecccccc--ccC---cccccCCCccEEEeecccccc-----cchhcccCCCCCcEEecCCCCCC--
Q 006695          191 -------GNITDLILSETAIQ--EVP---SSIECLTNLEKLYINRCMRLK-----RLSTSICKLKSLHVLVLDDCSKL--  251 (635)
Q Consensus       191 -------~~L~~L~L~~n~i~--~lp---~~~~~l~~L~~L~L~~n~~~~-----~lp~~~~~l~~L~~L~Ls~n~~~--  251 (635)
                             ++|++|++++|.++  .+|   ..+..+++|++|++++|.+..     ..+..+..+++|++|+|++|.+.  
T Consensus       152 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~  231 (386)
T 2ca6_A          152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHL  231 (386)
T ss_dssp             HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHH
T ss_pred             hhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcH
Confidence                   46677777777665  344   356677788888888887652     23446777888888888887764  


Q ss_pred             --CcchhhhcCCCCCCEEEecCCCcccc-----CchhcccccchhhccCCCCccEEEcCCCCCCc-----ccccc-cCCC
Q 006695          252 --ERFPEILEKMESVKCISLERTAITEL-----PSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASI-TQLS  318 (635)
Q Consensus       252 --~~~~~~l~~l~~L~~L~L~~n~l~~l-----p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l-~~l~  318 (635)
                        ..+|..+..+++|+.|+|++|.++..     |..+..        ..+++|+.|+|++|.++.     +|..+ .+++
T Consensus       232 g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~--------~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~  303 (386)
T 2ca6_A          232 GSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK--------LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  303 (386)
T ss_dssp             HHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT--------CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh--------ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCC
Confidence              55677777888888888888877643     222200        225778888888888776     77666 5578


Q ss_pred             CccEEeccCCCCCCcC
Q 006695          319 QLRSLHLKDCSMLSSL  334 (635)
Q Consensus       319 ~L~~L~L~~n~~l~~l  334 (635)
                      +|++|++++|++.+..
T Consensus       304 ~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          304 DLLFLELNGNRFSEED  319 (386)
T ss_dssp             TCCEEECTTSBSCTTS
T ss_pred             CceEEEccCCcCCcch
Confidence            8888888887766544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.77  E-value=4.2e-21  Score=215.54  Aligned_cols=342  Identities=14%  Similarity=0.074  Sum_probs=227.7

Q ss_pred             hhcCCCCCcEEEeecCCCCCCcccceeeecCCccc-CCCccceEeecCCC-CCCC--CCCCC-CCCCceEEEcCCCCCcc
Q 006695           17 AFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLE-YLPNELRYLHWHEY-PSKA--LPFDF-EPENLVKLNLPYSKVVQ   91 (635)
Q Consensus        17 ~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~-~l~~~L~~L~l~~~-~l~~--lp~~~-~l~~L~~L~L~~n~l~~   91 (635)
                      .+..+++|+.|++++|.+++        ..+..+. .++ +|++|++.+| .+..  ++... .+++|++|++++|.++.
T Consensus       100 l~~~~~~L~~L~L~~~~~~~--------~~~~~l~~~~~-~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~  170 (594)
T 2p1m_B          100 MSSSYTWLEEIRLKRMVVTD--------DCLELIAKSFK-NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDD  170 (594)
T ss_dssp             HHHHCTTCCEEEEESCBCCH--------HHHHHHHHHCT-TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEEC
T ss_pred             HHHhCCCCCeEEeeCcEEcH--------HHHHHHHHhCC-CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCC
Confidence            35678999999999987661        1112222 234 4999999888 3433  33333 57899999999998664


Q ss_pred             -----ccccCCCCCCCcEEEccCCCCCCCCC-----C-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC---
Q 006695           92 -----IWEGKKRAFKLKYVDIHNSQYLIRMP-----D-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC---  157 (635)
Q Consensus        92 -----l~~~~~~l~~L~~L~Ls~n~~~~~~p-----~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~---  157 (635)
                           ++.....+++|+.|++++|.  ..+.     . +..+++|++|++++|...+.++..+..+++|+.|++..+   
T Consensus       171 ~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~  248 (594)
T 2p1m_B          171 VSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE  248 (594)
T ss_dssp             CCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC
T ss_pred             cchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc
Confidence                 33334578899999999886  2222     1 245699999999998666667777888888888876544   


Q ss_pred             ----------------CCCCcc-----------CCCC-CCCCCcEEecCCCCCCCcc--C---cccCCcceEEecccccc
Q 006695          158 ----------------KSLRSF-----------PSNL-HFMSPIKIDFSSCFNLTEF--P---QISGNITDLILSETAIQ  204 (635)
Q Consensus       158 ----------------~~l~~l-----------p~~~-~l~~L~~L~l~~c~~l~~~--p---~~~~~L~~L~L~~n~i~  204 (635)
                                      ..++.+           +... .+++|+.|++++|. ++..  .   ...++|++|++++| +.
T Consensus       249 ~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~  326 (594)
T 2p1m_B          249 VRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IE  326 (594)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GH
T ss_pred             cchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cC
Confidence                            222222           1111 46899999999987 5431  1   24578999999988 44


Q ss_pred             --ccCcccccCCCccEEEeecc---------cccccchhcc-cCCCCCcEEecCCCCCCCcchhhhc-CCCCCCEEEec-
Q 006695          205 --EVPSSIECLTNLEKLYINRC---------MRLKRLSTSI-CKLKSLHVLVLDDCSKLERFPEILE-KMESVKCISLE-  270 (635)
Q Consensus       205 --~lp~~~~~l~~L~~L~L~~n---------~~~~~lp~~~-~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~L~-  270 (635)
                        .++.....+++|++|++.+|         .+.......+ .++++|+.|.++.+.+.......+. .+++|+.|+++ 
T Consensus       327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~  406 (594)
T 2p1m_B          327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI  406 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeec
Confidence              23333456899999999542         3322222223 3488999998887777665555554 58999999999 


Q ss_pred             -C----CCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-cccccc-CCCCccEEeccCCCCCCcCC----CCCC
Q 006695          271 -R----TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-LPASIT-QLSQLRSLHLKDCSMLSSLP----ELPQ  339 (635)
Q Consensus       271 -~----n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-lp~~l~-~l~~L~~L~L~~n~~l~~lp----~l~~  339 (635)
                       +    +.++..|..-    .+...+..+++|+.|+|++ .++. .+..+. .+++|++|+|++|.+....+    ...+
T Consensus       407 ~~~~~~~~l~~~~~~~----~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~  481 (594)
T 2p1m_B          407 IEPKAPDYLTLEPLDI----GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCD  481 (594)
T ss_dssp             SSTTCCCTTTCCCTHH----HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCT
T ss_pred             ccCCCcccccCCchhh----HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCC
Confidence             4    5666554310    1223345668899999987 4432 223343 38889999999988654322    2357


Q ss_pred             ccceecccccccccccC-ccccCccccchhhhhhhhhc
Q 006695          340 SLELLDAENCKQLQFIP-EILSGLEEVDASVLEKATFL  376 (635)
Q Consensus       340 sL~~L~l~~c~~l~~~~-~~~~~L~~L~~l~L~~n~~~  376 (635)
                      +|+.|++++|+...... .....+++|+.|++++|++.
T Consensus       482 ~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          482 SLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             TCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             CcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            89999999998733222 23456788999999988873

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=8.9e-20  Score=189.71  Aligned_cols=196  Identities=18%  Similarity=0.256  Sum_probs=120.6

Q ss_pred             CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCC-CC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIR-MP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~-~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      .+++.|++++|.+...+..+..+++|++|+|++|.+... ++ .+..+++|++|++++|......+..++.+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            455555555555555444445555555555555553322 33 2445555555555555444445555555556666666


Q ss_pred             cCCCCCCc--cCCCC-CCCCCcEEecCCCCCCCc--cC---cccC-CcceEEecccc--c--cccCcccccCCCccEEEe
Q 006695          155 EGCKSLRS--FPSNL-HFMSPIKIDFSSCFNLTE--FP---QISG-NITDLILSETA--I--QEVPSSIECLTNLEKLYI  221 (635)
Q Consensus       155 ~~~~~l~~--lp~~~-~l~~L~~L~l~~c~~l~~--~p---~~~~-~L~~L~L~~n~--i--~~lp~~~~~l~~L~~L~L  221 (635)
                      ++|..++.  ++..+ .+++|+.|++++|..++.  ++   ...+ +|++|++++|.  +  ..+|..+..+++|++|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            55533331  22222 455566666666544442  22   2235 78888888884  3  457777889999999999


Q ss_pred             eccc-ccccchhcccCCCCCcEEecCCCCC-CCcchhhhcCCCCCCEEEecCC
Q 006695          222 NRCM-RLKRLSTSICKLKSLHVLVLDDCSK-LERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       222 ~~n~-~~~~lp~~~~~l~~L~~L~Ls~n~~-~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      ++|. +....+..+..+++|++|++++|.. .......+..+++|+.|++++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            9999 5667777889999999999999962 2222235677888888888877

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=1.7e-18  Score=178.30  Aligned_cols=225  Identities=14%  Similarity=0.123  Sum_probs=121.4

Q ss_pred             CCcEEEccCCCCCCC----CCCCCCCCCCCEEeecCCCCCcccCccc--cCCCCCCEEeecCCCCCCccCCCCCCCCCcE
Q 006695          101 KLKYVDIHNSQYLIR----MPDLSETPNLERTNLKNCINLTCVPSSV--QNFNHLSMLCFEGCKSLRSFPSNLHFMSPIK  174 (635)
Q Consensus       101 ~L~~L~Ls~n~~~~~----~p~l~~l~~L~~L~L~~n~~l~~~~~~i--~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~  174 (635)
                      .++.+.+.++.+...    +..+..+++|++|++++|...+..|..+  ..+++|++|++++|......+...      .
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------~  138 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------E  138 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH------H
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH------H
Confidence            456666666543211    0112223557777777766666666665  666666666666655332211000      0


Q ss_pred             EecCCCCCCCccCcccCCcceEEeccccccccC-cccccCCCccEEEeeccccccc--ch--hcccCCCCCcEEecCCCC
Q 006695          175 IDFSSCFNLTEFPQISGNITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKR--LS--TSICKLKSLHVLVLDDCS  249 (635)
Q Consensus       175 L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~--lp--~~~~~l~~L~~L~Ls~n~  249 (635)
                               ..+ ...++|++|++++|.++.++ ..++.+++|++|+|++|++.+.  ++  ..+..+++|++|+|++|.
T Consensus       139 ---------~~~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          139 ---------LQQ-WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             ---------HHT-TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC
T ss_pred             ---------HHh-hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC
Confidence                     000 12345666666666666655 3466677777777777765442  22  223456667777777665


Q ss_pred             CCCcchh----hhcCCCCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEe
Q 006695          250 KLERFPE----ILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLH  324 (635)
Q Consensus       250 ~~~~~~~----~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~  324 (635)
                      +.. ++.    .+..+++|++|++++|.++.+ |..+..+       ..+++|++|+|++|+++.+|..+.  ++|++|+
T Consensus       209 l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~-------~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~  278 (310)
T 4glp_A          209 MET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRC-------MWSSALNSLNLSFAGLEQVPKGLP--AKLRVLD  278 (310)
T ss_dssp             CCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSC-------CCCTTCCCEECCSSCCCSCCSCCC--SCCSCEE
T ss_pred             CCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhc-------cCcCcCCEEECCCCCCCchhhhhc--CCCCEEE
Confidence            532 222    245566667777777666654 5444322       122566666666666666665553  5666666


Q ss_pred             ccCCCCCC-cCCCCCCccceeccccccc
Q 006695          325 LKDCSMLS-SLPELPQSLELLDAENCKQ  351 (635)
Q Consensus       325 L~~n~~l~-~lp~l~~sL~~L~l~~c~~  351 (635)
                      |++|++.+ ..+..+++|+.|++++|+.
T Consensus       279 Ls~N~l~~~~~~~~l~~L~~L~L~~N~l  306 (310)
T 4glp_A          279 LSSNRLNRAPQPDELPEVDNLTLDGNPF  306 (310)
T ss_dssp             CCSCCCCSCCCTTSCCCCSCEECSSTTT
T ss_pred             CCCCcCCCCchhhhCCCccEEECcCCCC
Confidence            66665554 2333445566666666543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.76  E-value=7.8e-20  Score=192.51  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=47.7

Q ss_pred             CccEEEeecccccc----cchhcccCCC-CCcEEecCCCCCCCcchhh----hcCC-CCCCEEEecCCCccccCchhccc
Q 006695          215 NLEKLYINRCMRLK----RLSTSICKLK-SLHVLVLDDCSKLERFPEI----LEKM-ESVKCISLERTAITELPSSFANL  284 (635)
Q Consensus       215 ~L~~L~L~~n~~~~----~lp~~~~~l~-~L~~L~Ls~n~~~~~~~~~----l~~l-~~L~~L~L~~n~l~~lp~~~~~l  284 (635)
                      +|++|+|++|.+..    .++..+..++ +|++|+|++|.+.+..+..    +..+ ++|+.|+|++|.|+.....    
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~----  214 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA----  214 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH----
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH----
Confidence            45555555554442    2223333333 5555555555544433322    2233 3555555555555541100    


Q ss_pred             ccchhhccC-CCCccEEEcCCCCCCcccc-----cccCCCCccEEeccCCC
Q 006695          285 EGLKDLYIG-GSSLRQLNLSRNDSESLPA-----SITQLSQLRSLHLKDCS  329 (635)
Q Consensus       285 ~~L~~l~~~-~~~L~~L~Ls~n~~~~lp~-----~l~~l~~L~~L~L~~n~  329 (635)
                       .+...+.. .++|++|+|++|.++..+.     .+..+++|++|+|++|.
T Consensus       215 -~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          215 -ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             -HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred             -HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence             00111111 2355555555555544322     23445555555555554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.75  E-value=1.3e-19  Score=192.59  Aligned_cols=240  Identities=15%  Similarity=0.061  Sum_probs=175.3

Q ss_pred             ecCCcccCCCccceEeecCCCCCCC-----CCCCC-CCCCceEEEcCCCCCccc----cccC-------CCCCCCcEEEc
Q 006695           45 HLDQGLEYLPNELRYLHWHEYPSKA-----LPFDF-EPENLVKLNLPYSKVVQI----WEGK-------KRAFKLKYVDI  107 (635)
Q Consensus        45 ~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~l~~l----~~~~-------~~l~~L~~L~L  107 (635)
                      .++..+...++ |++|++++|.+..     ++..+ .+++|++|+|++|.+..+    |.++       ..+++|++|+|
T Consensus        23 ~l~~~l~~~~~-L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           23 SVFAVLLEDDS-VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             TTSHHHHHCSC-CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHHHhcCCC-ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence            34556666655 9999999998865     33334 688999999999866533    4443       78999999999


Q ss_pred             cCCCCCCC----CC-CCCCCCCCCEEeecCCCCCcccCc----cccCC---------CCCCEEeecCCCCC-CccCCCCC
Q 006695          108 HNSQYLIR----MP-DLSETPNLERTNLKNCINLTCVPS----SVQNF---------NHLSMLCFEGCKSL-RSFPSNLH  168 (635)
Q Consensus       108 s~n~~~~~----~p-~l~~l~~L~~L~L~~n~~l~~~~~----~i~~l---------~~L~~L~L~~~~~l-~~lp~~~~  168 (635)
                      ++|.+...    +| .+..+++|++|+|++|......+.    .+..+         ++|++|++++|+.. ..++... 
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-  180 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA-  180 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH-
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH-
Confidence            99997652    34 377899999999999976543333    33344         88888888887633 1221100 


Q ss_pred             CCCCcEEecCCCCCCCccCcccCCcceEEecccccc------ccCcccccCCCccEEEeeccccc----ccchhcccCCC
Q 006695          169 FMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ------EVPSSIECLTNLEKLYINRCMRL----KRLSTSICKLK  238 (635)
Q Consensus       169 l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~------~lp~~~~~l~~L~~L~L~~n~~~----~~lp~~~~~l~  238 (635)
                                      ..-...++|++|++++|.++      -+|..+..+++|++|+|++|.+.    ..+|..+..++
T Consensus       181 ----------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          181 ----------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             ----------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             ----------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence                            00012246777777777776      23447888999999999999985    67788889999


Q ss_pred             CCcEEecCCCCCCCc----chhhhcC--CCCCCEEEecCCCccc-----cCchhcccccchhhccCCCCccEEEcCCCCC
Q 006695          239 SLHVLVLDDCSKLER----FPEILEK--MESVKCISLERTAITE-----LPSSFANLEGLKDLYIGGSSLRQLNLSRNDS  307 (635)
Q Consensus       239 ~L~~L~Ls~n~~~~~----~~~~l~~--l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~  307 (635)
                      +|++|+|++|.+.+.    ++..+..  +++|+.|+|++|.++.     +|..+         ...+++|+.|+|++|.+
T Consensus       245 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l---------~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          245 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI---------DEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH---------HHHCTTCCEEECTTSBS
T ss_pred             CcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH---------HhcCCCceEEEccCCcC
Confidence            999999999988765    5666744  9999999999999986     66543         13458999999999998


Q ss_pred             Cccc
Q 006695          308 ESLP  311 (635)
Q Consensus       308 ~~lp  311 (635)
                      +...
T Consensus       316 ~~~~  319 (386)
T 2ca6_A          316 SEED  319 (386)
T ss_dssp             CTTS
T ss_pred             Ccch
Confidence            7655

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=1.2e-17  Score=166.36  Aligned_cols=173  Identities=18%  Similarity=0.219  Sum_probs=88.2

Q ss_pred             cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      .++++++++.++.+|..+.  ++|+.|+|++|.+.+..+..+.++++|++|+|++|.+.+..+..+..+++|+.|++++|
T Consensus        16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            3445555555555554433  35555555555555544445555555555555555555544445555555555555555


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCC---CCCccceecccc
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAEN  348 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~  348 (635)
                      .++.+|..         .+..+++|++|+|++|+++.+|.. +..+++|++|+|++|.+.+..+.   .+++|+.|++++
T Consensus        94 ~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           94 QLASLPLG---------VFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CCCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cccccChh---------HhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence            55554431         123345555555555555555443 34555555555555544332222   124555555555


Q ss_pred             cccccccCccccCccccchhhhhhhhhc
Q 006695          349 CKQLQFIPEILSGLEEVDASVLEKATFL  376 (635)
Q Consensus       349 c~~l~~~~~~~~~L~~L~~l~L~~n~~~  376 (635)
                      |......+..+..+++|+.+++++|++.
T Consensus       165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          165 NQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            5544444445555666666666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=3.7e-17  Score=162.79  Aligned_cols=174  Identities=16%  Similarity=0.197  Sum_probs=85.0

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNCI  134 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n~  134 (635)
                      .+.++++++.+..+|..+. ++|+.|+|++|++..++. .+..+++|++|+|++|.+....+. +..+++|++|+|++|.
T Consensus        16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            4455555555555555432 355555555555554432 344555555555555544333332 4444444444444443


Q ss_pred             CCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcc-cccC
Q 006695          135 NLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSS-IECL  213 (635)
Q Consensus       135 ~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~-~~~l  213 (635)
                      .....+..+..+++|+                                            +|+|++|.|+.+|.. +..+
T Consensus        95 l~~~~~~~~~~l~~L~--------------------------------------------~L~L~~N~l~~~~~~~~~~l  130 (251)
T 3m19_A           95 LASLPLGVFDHLTQLD--------------------------------------------KLYLGGNQLKSLPSGVFDRL  130 (251)
T ss_dssp             CCCCCTTTTTTCTTCC--------------------------------------------EEECCSSCCCCCCTTTTTTC
T ss_pred             ccccChhHhcccCCCC--------------------------------------------EEEcCCCcCCCcChhHhccC
Confidence            3322222233333333                                            333333344444333 3455


Q ss_pred             CCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc
Q 006695          214 TNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       214 ~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      ++|++|+|++|.+.+..+..+..+++|++|+|++|.+.+..+..+..+++|+.|++++|.++
T Consensus       131 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          131 TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            55555555555555444444555555555555555555544445555555555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.74  E-value=3.7e-19  Score=187.37  Aligned_cols=181  Identities=14%  Similarity=0.100  Sum_probs=130.1

Q ss_pred             CcceEEeccccccccCc-----ccccC-CCccEEEeecccccccchhc----ccC-CCCCcEEecCCCCCCCc----chh
Q 006695          192 NITDLILSETAIQEVPS-----SIECL-TNLEKLYINRCMRLKRLSTS----ICK-LKSLHVLVLDDCSKLER----FPE  256 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~-----~~~~l-~~L~~L~L~~n~~~~~lp~~----~~~-l~~L~~L~Ls~n~~~~~----~~~  256 (635)
                      +|++|+|++|.++..+.     .+..+ ++|++|++++|.+.+..+..    +.. .++|++|+|++|.+...    ++.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            45555555555554432     24445 78999999999887665544    344 36999999999988753    445


Q ss_pred             hhcCCC-CCCEEEecCCCccccCchhcccccchhhccCC-CCccEEEcCCCCCCc-----ccccccC-CCCccEEeccCC
Q 006695          257 ILEKME-SVKCISLERTAITELPSSFANLEGLKDLYIGG-SSLRQLNLSRNDSES-----LPASITQ-LSQLRSLHLKDC  328 (635)
Q Consensus       257 ~l~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~-~~L~~L~Ls~n~~~~-----lp~~l~~-l~~L~~L~L~~n  328 (635)
                      .+..++ +|++|++++|.++.....     .+...+..+ ++|++|+|++|.++.     ++..+.. .++|++|+|++|
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~-----~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N  235 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCA-----ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN  235 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHH-----HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred             HHhcCCccccEeeecCCCCchhhHH-----HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence            566666 999999999999865431     112233445 599999999999887     7766766 459999999999


Q ss_pred             CCCCcCC-------CCCCccceeccccccc-------ccccCccccCccccchhhhhhhhhcc
Q 006695          329 SMLSSLP-------ELPQSLELLDAENCKQ-------LQFIPEILSGLEEVDASVLEKATFLN  377 (635)
Q Consensus       329 ~~l~~lp-------~l~~sL~~L~l~~c~~-------l~~~~~~~~~L~~L~~l~L~~n~~~~  377 (635)
                      ++....+       ...++|+.|++++|..       +..++..+..+++|+.+++++|++..
T Consensus       236 ~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          236 CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            8766433       2457899999999972       33455577888899999999887643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=3.2e-17  Score=181.43  Aligned_cols=193  Identities=19%  Similarity=0.228  Sum_probs=113.7

Q ss_pred             hhcCCC-----CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcc
Q 006695           17 AFANMP-----NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQ   91 (635)
Q Consensus        17 ~f~~l~-----~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~   91 (635)
                      +|.+++     +|+.|++++|.+++         +|..+.   .+|++|++++|.++.+|  -.+++|++|++++|+++.
T Consensus        49 ~~~~l~~C~~~~L~~L~Ls~n~L~~---------lp~~l~---~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~  114 (571)
T 3cvr_A           49 AVSLLKECLINQFSELQLNRLNLSS---------LPDNLP---PQITVLEITQNALISLP--ELPASLEYLDACDNRLST  114 (571)
T ss_dssp             HHHHHHHHHHTTCSEEECCSSCCSC---------CCSCCC---TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred             hhhhccccccCCccEEEeCCCCCCc---------cCHhHc---CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC
Confidence            455554     77777777776663         333331   34777777777777777  235677777777777777


Q ss_pred             ccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCC
Q 006695           92 IWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMS  171 (635)
Q Consensus        92 l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~  171 (635)
                      +|. +..  +|++|+|++|.+.. +|.  .+++|+.|+|++|... .+|.   .+++|+.|++++|+ ++.+|. +.   
T Consensus       115 ip~-l~~--~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~-L~~lp~-l~---  179 (571)
T 3cvr_A          115 LPE-LPA--SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLT-MLPE---LPTSLEVLSVRNNQ-LTFLPE-LP---  179 (571)
T ss_dssp             CCC-CCT--TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSCCCC-CC---
T ss_pred             cch-hhc--CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccC-cCCC---cCCCcCEEECCCCC-CCCcch-hh---
Confidence            666 443  67777777776544 555  5667777777776443 3554   45666666666654 233444 22   


Q ss_pred             CcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCc-------cEEEeecccccccchhcccCCCCCcEEe
Q 006695          172 PIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNL-------EKLYINRCMRLKRLSTSICKLKSLHVLV  244 (635)
Q Consensus       172 L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L-------~~L~L~~n~~~~~lp~~~~~l~~L~~L~  244 (635)
                                         .+|+.|+|++|.|+.+|. +..  +|       +.|+|++|.+. .+|..+..+++|+.|+
T Consensus       180 -------------------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~  236 (571)
T 3cvr_A          180 -------------------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII  236 (571)
T ss_dssp             -------------------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred             -------------------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence                               455555555555555555 333  44       66666666554 3555555566666666


Q ss_pred             cCCCCCCCcchhhhcCC
Q 006695          245 LDDCSKLERFPEILEKM  261 (635)
Q Consensus       245 Ls~n~~~~~~~~~l~~l  261 (635)
                      |++|.+.+..|..+..+
T Consensus       237 L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          237 LEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCSSSCCHHHHHHHHHH
T ss_pred             eeCCcCCCcCHHHHHHh
Confidence            66666666666555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=1.2e-16  Score=176.78  Aligned_cols=187  Identities=16%  Similarity=0.255  Sum_probs=118.8

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINL  136 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l  136 (635)
                      ++.|++++|.+..+|..+ +++|++|+|++|+|+.+|   ..+++|++|+|++|.+.. +|.+..  +|+.|+|++|.. 
T Consensus        61 L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~N~l-  132 (571)
T 3cvr_A           61 FSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDNNQL-  132 (571)
T ss_dssp             CSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCSSCC-
T ss_pred             ccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCCCcC-
Confidence            555555555555555433 244555555555555544   234455555555554333 333222  444444444432 


Q ss_pred             cccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCc
Q 006695          137 TCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNL  216 (635)
Q Consensus       137 ~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L  216 (635)
                                              +.+|.  .+++|+.|++++| .++.+|..+++|++|+|++|.|+.+|. +.  ++|
T Consensus       133 ------------------------~~lp~--~l~~L~~L~Ls~N-~l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L  182 (571)
T 3cvr_A          133 ------------------------TMLPE--LPALLEYINADNN-QLTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESL  182 (571)
T ss_dssp             ------------------------SCCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTC
T ss_pred             ------------------------CCCCC--cCccccEEeCCCC-ccCcCCCcCCCcCEEECCCCCCCCcch-hh--CCC
Confidence                                    22444  3455555555553 344455556789999999999999998 66  999


Q ss_pred             cEEEeecccccccchhcccCCCCC-------cEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhccccc
Q 006695          217 EKLYINRCMRLKRLSTSICKLKSL-------HVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLEG  286 (635)
Q Consensus       217 ~~L~L~~n~~~~~lp~~~~~l~~L-------~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~  286 (635)
                      +.|+|++|.+. .+|. +..  +|       +.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..+..+..
T Consensus       183 ~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          183 EALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             CEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            99999999877 6666 554  77       99999998876 57888888999999999999998 56776666543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.71  E-value=1.3e-16  Score=154.02  Aligned_cols=168  Identities=21%  Similarity=0.288  Sum_probs=137.3

Q ss_pred             CCccCc-ccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcC
Q 006695          183 LTEFPQ-ISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEK  260 (635)
Q Consensus       183 l~~~p~-~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~  260 (635)
                      ++.+|. ...++++|++++|.++.++.. ++.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus        19 l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~   98 (208)
T 2o6s_A           19 RTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDK   98 (208)
T ss_dssp             CSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcC
Confidence            344443 346789999999999988765 788999999999999888766667888999999999999888777777889


Q ss_pred             CCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCCCCC
Q 006695          261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPELPQ  339 (635)
Q Consensus       261 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~l~~  339 (635)
                      +++|++|++++|.++.+|..         .+..+++|+.|++++|+++.+|.. +..+++|++|++++|+.....    +
T Consensus        99 l~~L~~L~L~~N~l~~~~~~---------~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~  165 (208)
T 2o6s_A           99 LTQLKELALNTNQLQSLPDG---------VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----P  165 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----T
T ss_pred             ccCCCEEEcCCCcCcccCHh---------HhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----C
Confidence            99999999999999988763         235568999999999999888865 688999999999999776544    5


Q ss_pred             ccceecccccccccccCccccCcc
Q 006695          340 SLELLDAENCKQLQFIPEILSGLE  363 (635)
Q Consensus       340 sL~~L~l~~c~~l~~~~~~~~~L~  363 (635)
                      +|+.|+++.|...+.+|..+..++
T Consensus       166 ~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          166 GIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             TTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CHHHHHHHHHhCCceeeccCcccc
Confidence            788899999888888887776644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.69  E-value=7e-17  Score=164.53  Aligned_cols=107  Identities=23%  Similarity=0.334  Sum_probs=64.3

Q ss_pred             cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchh
Q 006695          210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKD  289 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~  289 (635)
                      +..+++|++|++++|.+.+.  ..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++.++. +        
T Consensus       108 l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l--------  174 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-L--------  174 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-G--------
T ss_pred             hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-h--------
Confidence            33444444444444444332  2344555566666665555443  456666777777777777766543 2        


Q ss_pred             hccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCC
Q 006695          290 LYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLS  332 (635)
Q Consensus       290 l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~  332 (635)
                        ..+++|+.|++++|.++.+|. +..+++|+.|++++|++..
T Consensus       175 --~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          175 --AGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             --TTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEEC
T ss_pred             --cCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccC
Confidence              345677777777777777763 7777778888887765543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.67  E-value=2.6e-16  Score=175.95  Aligned_cols=87  Identities=24%  Similarity=0.368  Sum_probs=41.5

Q ss_pred             cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchh
Q 006695          210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKD  289 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~  289 (635)
                      +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.|+.+|.          
T Consensus       127 l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~~----------  192 (605)
T 1m9s_A          127 LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA----------  192 (605)
T ss_dssp             GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG----------
T ss_pred             ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCChH----------
Confidence            44444555555555444332  334445555555555554444333  4555555555555555554421          


Q ss_pred             hccCCCCccEEEcCCCCCCccc
Q 006695          290 LYIGGSSLRQLNLSRNDSESLP  311 (635)
Q Consensus       290 l~~~~~~L~~L~Ls~n~~~~lp  311 (635)
                       +..+++|+.|+|++|.+...|
T Consensus       193 -l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          193 -LAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             -GTTCTTCSEEECCSEEEECCC
T ss_pred             -HccCCCCCEEEccCCcCcCCc
Confidence             123345555555555544433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=9.1e-16  Score=156.26  Aligned_cols=187  Identities=17%  Similarity=0.209  Sum_probs=107.8

Q ss_pred             ecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccC
Q 006695           61 HWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVP  140 (635)
Q Consensus        61 ~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~  140 (635)
                      .+....+..+...-.+++|+.|++++|.++.++ ++..+++|++|+|++|++... +.+..+++|+.|++++|... .++
T Consensus        30 ~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-~~~  106 (291)
T 1h6t_A           30 NLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVK-DLS  106 (291)
T ss_dssp             HTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCC-CGG
T ss_pred             HhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCC-cccccCCCCCEEECCCCcCC-CCh
Confidence            344444433322224567777888887777774 467778888888888775543 33777888888888877543 333


Q ss_pred             ccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEE
Q 006695          141 SSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLY  220 (635)
Q Consensus       141 ~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~  220 (635)
                       .+..+++|+.|++++|..                                            +.+ ..+..+++|+.|+
T Consensus       107 -~l~~l~~L~~L~L~~n~i--------------------------------------------~~~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A          107 -SLKDLKKLKSLSLEHNGI--------------------------------------------SDI-NGLVHLPQLESLY  140 (291)
T ss_dssp             -GGTTCTTCCEEECTTSCC--------------------------------------------CCC-GGGGGCTTCCEEE
T ss_pred             -hhccCCCCCEEECCCCcC--------------------------------------------CCC-hhhcCCCCCCEEE
Confidence             366677777777766531                                            111 1233344444444


Q ss_pred             eecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEE
Q 006695          221 INRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQL  300 (635)
Q Consensus       221 L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L  300 (635)
                      +++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.++.+|. +          ..+++|+.|
T Consensus       141 l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~-l----------~~l~~L~~L  205 (291)
T 1h6t_A          141 LGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA-L----------AGLKNLDVL  205 (291)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-G----------TTCTTCSEE
T ss_pred             ccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh-h----------ccCCCCCEE
Confidence            444444332  234455555555555555444333  5566666666666666665542 2          344666777


Q ss_pred             EcCCCCCCccc
Q 006695          301 NLSRNDSESLP  311 (635)
Q Consensus       301 ~Ls~n~~~~lp  311 (635)
                      ++++|++...|
T Consensus       206 ~l~~n~i~~~~  216 (291)
T 1h6t_A          206 ELFSQECLNKP  216 (291)
T ss_dssp             EEEEEEEECCC
T ss_pred             ECcCCcccCCc
Confidence            77777665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.64  E-value=2.2e-15  Score=168.42  Aligned_cols=83  Identities=17%  Similarity=0.253  Sum_probs=60.1

Q ss_pred             CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      +|+.|+|++|.++.+ ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++
T Consensus       132 ~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~  206 (605)
T 1m9s_A          132 QLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS  206 (605)
T ss_dssp             TCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCS
T ss_pred             ccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccC
Confidence            344444555555555 456777888888888887776655  77888888888888877653  3578888888999988


Q ss_pred             CCccccCc
Q 006695          272 TAITELPS  279 (635)
Q Consensus       272 n~l~~lp~  279 (635)
                      |.+...|.
T Consensus       207 N~l~~~p~  214 (605)
T 1m9s_A          207 QECLNKPI  214 (605)
T ss_dssp             EEEECCCC
T ss_pred             CcCcCCcc
Confidence            88887654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.63  E-value=2.8e-15  Score=147.00  Aligned_cols=147  Identities=21%  Similarity=0.176  Sum_probs=95.5

Q ss_pred             cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      .+.++.+++.++.+|..+.  ++|++|+|++|.+.+..|..|..+++|++|+|++|.+....+..|..+++|+.|+|++|
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            4456666677777776543  67777777777777666666777777777777777765555556677777777777777


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC---CCCccceeccccc
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENC  349 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c  349 (635)
                      .|+.+|...         +..+++|+.|+|++|+++.+|..+..+++|++|+|++|++.+..+.   .+++|+.|++++|
T Consensus        99 ~l~~l~~~~---------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  169 (229)
T 3e6j_A           99 QLTVLPSAV---------FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN  169 (229)
T ss_dssp             CCCCCCTTT---------TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cCCccChhH---------hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence            777665431         2345677777777777777777777777777777777655432222   1245555555555


Q ss_pred             c
Q 006695          350 K  350 (635)
Q Consensus       350 ~  350 (635)
                      +
T Consensus       170 ~  170 (229)
T 3e6j_A          170 P  170 (229)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.63  E-value=1.8e-15  Score=144.64  Aligned_cols=109  Identities=20%  Similarity=0.246  Sum_probs=60.3

Q ss_pred             cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC-ccccCchhcccccch
Q 006695          210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA-ITELPSSFANLEGLK  288 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~  288 (635)
                      +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.+| .+       
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l-------  155 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL-------  155 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG-------
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hh-------
Confidence            3444555555555555544444555555555555555555555555555556666666666665 55544 22       


Q ss_pred             hhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          289 DLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       289 ~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                         ..+++|+.|++++|.++.++ .+..+++|++|++++|++
T Consensus       156 ---~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          156 ---KTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             ---GGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC--
T ss_pred             ---cCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCccc
Confidence               33456666666666666655 556666666666666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=3.7e-15  Score=145.18  Aligned_cols=128  Identities=21%  Similarity=0.282  Sum_probs=73.7

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA  273 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  273 (635)
                      +.+++++++++++|..+.  ++|+.|++++|.+.+..+..|..+++|+.|+|++|.+.+..|..|..+++|+.|+|++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            345555556666655443  456666666666555555556666666666666666555555666666666666666666


Q ss_pred             ccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCC
Q 006695          274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLS  332 (635)
Q Consensus       274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~  332 (635)
                      |+.+|..+         +..+++|+.|+|++|.++.++ ..+..+++|++|+|++|++.+
T Consensus        92 l~~l~~~~---------f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  142 (220)
T 2v9t_B           92 ITELPKSL---------FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT  142 (220)
T ss_dssp             CCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCccCHhH---------ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence            66655421         234456666666666665553 345566666666666655443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.62  E-value=5.6e-15  Score=143.91  Aligned_cols=141  Identities=19%  Similarity=0.250  Sum_probs=100.8

Q ss_pred             CCccCcc-cCCcceEEeccccccccCc--ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhc
Q 006695          183 LTEFPQI-SGNITDLILSETAIQEVPS--SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILE  259 (635)
Q Consensus       183 l~~~p~~-~~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~  259 (635)
                      ++.+|.. ...+++|+|++|.|+.++.  .+..+++|++|+|++|.+.+..+..|.++++|++|+|++|.+.+..+..|.
T Consensus        23 l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  102 (220)
T 2v70_A           23 LNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFK  102 (220)
T ss_dssp             CSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGT
T ss_pred             cccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhc
Confidence            3444432 3456778888888887743  377788888888888887776666778888888888888877777777777


Q ss_pred             CCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCC
Q 006695          260 KMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLS  332 (635)
Q Consensus       260 ~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~  332 (635)
                      .+++|++|+|++|.|+.++..         .+..+++|+.|+|++|+++.+ |..+..+++|++|+|++|++..
T Consensus       103 ~l~~L~~L~Ls~N~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A          103 GLESLKTLMLRSNRITCVGND---------SFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             TCSSCCEEECTTSCCCCBCTT---------SSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             CCcCCCEEECCCCcCCeECHh---------HcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            888888888888888776421         124457778888888887777 5567777777777777776543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.62  E-value=6.2e-15  Score=144.58  Aligned_cols=151  Identities=23%  Similarity=0.255  Sum_probs=127.4

Q ss_pred             cEEecCCCCCCCccCc-ccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCC
Q 006695          173 IKIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK  250 (635)
Q Consensus       173 ~~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~  250 (635)
                      +.++.++ ..++.+|. ..++|++|+|++|.|+.+ |..+..+++|++|+|++|.+....+..|..+++|++|+|++|.+
T Consensus        22 ~~v~c~~-~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           22 TTVDCRS-KRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEccC-CCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            3444444 34555554 347899999999999988 56689999999999999998766667789999999999999998


Q ss_pred             CCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEeccCCC
Q 006695          251 LERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCS  329 (635)
Q Consensus       251 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n~  329 (635)
                      .+..+..|..+++|+.|++++|.|+.+|..+          ..+++|+.|+|++|+++.+|. .+..+++|+.|+|++|+
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGI----------ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTG----------GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCccc----------ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            8877788899999999999999999998766          445899999999999999985 47899999999999998


Q ss_pred             CCCcC
Q 006695          330 MLSSL  334 (635)
Q Consensus       330 ~l~~l  334 (635)
                      +....
T Consensus       171 ~~c~c  175 (229)
T 3e6j_A          171 WDCEC  175 (229)
T ss_dssp             BCTTB
T ss_pred             ccCCc
Confidence            76543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.62  E-value=5.6e-15  Score=143.93  Aligned_cols=148  Identities=20%  Similarity=0.302  Sum_probs=124.6

Q ss_pred             EEecCCCCCCCccCc-ccCCcceEEeccccccccCc-ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCC
Q 006695          174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL  251 (635)
Q Consensus       174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~  251 (635)
                      .+++++ ..++.+|. .+.+++.|++++|.|+.++. .+..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.
T Consensus        15 ~v~c~~-~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           15 IVDCRG-KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             EEECTT-SCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             EEEcCC-CCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            344444 34555554 34689999999999999986 6899999999999999999888999999999999999999988


Q ss_pred             CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695          252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       252 ~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~  330 (635)
                      ...+..|..+++|+.|+|++|.|+.++..         .+..+++|+.|+|++|.++.++.. +..+++|++|+|++|++
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVD---------AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHH---------HcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            77777789999999999999999988542         235678999999999999999864 78899999999999875


Q ss_pred             C
Q 006695          331 L  331 (635)
Q Consensus       331 l  331 (635)
                      .
T Consensus       165 ~  165 (220)
T 2v9t_B          165 I  165 (220)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.62  E-value=1.3e-15  Score=160.05  Aligned_cols=149  Identities=19%  Similarity=0.202  Sum_probs=99.8

Q ss_pred             cEEecCCCCCCCccCcc-cCCcceEEeccccccccCcc-cc-cCCCccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695          173 IKIDFSSCFNLTEFPQI-SGNITDLILSETAIQEVPSS-IE-CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS  249 (635)
Q Consensus       173 ~~L~l~~c~~l~~~p~~-~~~L~~L~L~~n~i~~lp~~-~~-~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~  249 (635)
                      +.+++++ ..++.+|.. +..++.|+|++|.|+.++.. +. .+++|+.|+|++|.+.+..+..|.++++|++|+|++|.
T Consensus        21 ~~l~c~~-~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TEEECCS-SCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCC-CCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            4566665 356666643 35677777777777777654 44 77777777777777776666677777777777777777


Q ss_pred             CCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccc----cCCCCccEEec
Q 006695          250 KLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASI----TQLSQLRSLHL  325 (635)
Q Consensus       250 ~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l----~~l~~L~~L~L  325 (635)
                      +.+..+..|..+++|+.|+|++|.|+.++..         .+..+++|+.|+|++|.++.+|..+    ..+++|+.|+|
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~---------~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L  170 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRN---------AFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDL  170 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTT---------TTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEEC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHH---------HhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEEC
Confidence            6666666677777777777777777766321         2344567777777777777777654    45677777777


Q ss_pred             cCCCCC
Q 006695          326 KDCSML  331 (635)
Q Consensus       326 ~~n~~l  331 (635)
                      ++|++.
T Consensus       171 ~~N~l~  176 (361)
T 2xot_A          171 SSNKLK  176 (361)
T ss_dssp             CSSCCC
T ss_pred             CCCCCC
Confidence            765543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.62  E-value=1.1e-14  Score=140.46  Aligned_cols=168  Identities=18%  Similarity=0.143  Sum_probs=141.6

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA  273 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  273 (635)
                      +.++.+++.++++|..+  .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus        10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~   87 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ   87 (208)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence            57888899999999765  4699999999999987777778999999999999999887777778999999999999999


Q ss_pred             ccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCC---CCCccceeccccc
Q 006695          274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPE---LPQSLELLDAENC  349 (635)
Q Consensus       274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~---l~~sL~~L~l~~c  349 (635)
                      ++.+|...         +..+++|++|++++|.++.+|.. +..+++|++|++++|++.+..+.   .+++|+.|++++|
T Consensus        88 l~~~~~~~---------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A           88 LQSLPNGV---------FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCCCCTTT---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCccCHhH---------hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence            99887632         35678999999999999999875 68999999999999887655443   2579999999999


Q ss_pred             ccccccCccccCccccchhhhhhhhhcccc
Q 006695          350 KQLQFIPEILSGLEEVDASVLEKATFLNSA  379 (635)
Q Consensus       350 ~~l~~~~~~~~~L~~L~~l~L~~n~~~~~~  379 (635)
                      +..       ..++.|+.+++..|.+....
T Consensus       159 ~~~-------~~~~~l~~L~~~~n~~~g~i  181 (208)
T 2o6s_A          159 PWD-------CTCPGIRYLSEWINKHSGVV  181 (208)
T ss_dssp             CBC-------CCTTTTHHHHHHHHHCTTTB
T ss_pred             Cee-------cCCCCHHHHHHHHHhCCcee
Confidence            654       34567888999999887553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.60  E-value=2.1e-15  Score=144.19  Aligned_cols=149  Identities=17%  Similarity=0.151  Sum_probs=75.5

Q ss_pred             CCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeec
Q 006695           76 PENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFE  155 (635)
Q Consensus        76 l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~  155 (635)
                      +++|+.|++++|.++.++ ++..+++|++|++++|. ...++.+..+++|++|++++|......+..++.+++|+.|+++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            445666666666666555 45566666666666663 3334455566666666666665555455556666666666666


Q ss_pred             CCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEecccc-ccccCcccccCCCccEEEeecccccccchhc
Q 006695          156 GCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETA-IQEVPSSIECLTNLEKLYINRCMRLKRLSTS  233 (635)
Q Consensus       156 ~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~-i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~  233 (635)
                      +|......+..+ .+++|                     ++|++++|. ++.+| .+..+++|+.|++++|.+.+ ++ .
T Consensus       121 ~n~i~~~~~~~l~~l~~L---------------------~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~  176 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKV---------------------NSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-G  176 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSC---------------------CEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-T
T ss_pred             CCccCcHhHHHHhhCCCC---------------------CEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-H
Confidence            554333222211 22333                     333333333 33333 34455555555555555433 22 3


Q ss_pred             ccCCCCCcEEecCCCCC
Q 006695          234 ICKLKSLHVLVLDDCSK  250 (635)
Q Consensus       234 ~~~l~~L~~L~Ls~n~~  250 (635)
                      +..+++|+.|++++|.+
T Consensus       177 l~~l~~L~~L~l~~N~i  193 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQTI  193 (197)
T ss_dssp             GGGCSSCCEEEECBC--
T ss_pred             hccCCCCCEEEeeCccc
Confidence            44555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.60  E-value=4.2e-15  Score=156.19  Aligned_cols=172  Identities=19%  Similarity=0.177  Sum_probs=112.8

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccchhccc-CCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSIC-KLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      +.+++++++++.+|..+.  +.++.|+|++|.+.+..+..+. ++++|+.|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            467777777777776543  3567777777777666666665 7777777777777776666667777777777777777


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCccc-ccccCCCCccEEeccCCCCCCcCCC-C------CCcccee
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP-ASITQLSQLRSLHLKDCSMLSSLPE-L------PQSLELL  344 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp-~~l~~l~~L~~L~L~~n~~l~~lp~-l------~~sL~~L  344 (635)
                      .|+.++..         .+..+++|+.|+|++|++..++ ..+..+++|++|+|++|.+.. +|. .      +++|+.|
T Consensus        99 ~l~~~~~~---------~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L  168 (361)
T 2xot_A           99 HLHTLDEF---------LFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLL  168 (361)
T ss_dssp             CCCEECTT---------TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEE
T ss_pred             cCCcCCHH---------HhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEE
Confidence            77766542         2344577777777777777663 456777777777777765544 332 1      4677777


Q ss_pred             cccccccccccCccccCccc--cchhhhhhhhhcc
Q 006695          345 DAENCKQLQFIPEILSGLEE--VDASVLEKATFLN  377 (635)
Q Consensus       345 ~l~~c~~l~~~~~~~~~L~~--L~~l~L~~n~~~~  377 (635)
                      ++++|......+..+..++.  ++.++|++|++.+
T Consensus       169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             ECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            77777654433345555555  3566777776643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.59  E-value=9.9e-15  Score=142.16  Aligned_cols=66  Identities=18%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc
Q 006695          210 IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      +..+++|++|+|++|.+.+..|..|..+++|++|+|++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            444555555555555555444555555555555555555555555555555555555555555544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.59  E-value=2.5e-15  Score=150.61  Aligned_cols=169  Identities=20%  Similarity=0.216  Sum_probs=87.0

Q ss_pred             CCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecC
Q 006695           77 ENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEG  156 (635)
Q Consensus        77 ~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~  156 (635)
                      .+++.++++++.++.++ .+..+++|+.|++++|.+ ..++.+..+++|+.|+|++|... .++. +..+++|+.|++++
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNI-QSLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCS
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCc-ccchHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCC
Confidence            34555556666666554 455566666666666653 33455566666666666666333 2333 66666666666666


Q ss_pred             CCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccC
Q 006695          157 CKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICK  236 (635)
Q Consensus       157 ~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~  236 (635)
                      |+ ++.+|..                    +.  .+|++|++++|.++.++ .+..+++|+.|++++|.+.+. + .+..
T Consensus        95 N~-l~~l~~~--------------------~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~  148 (263)
T 1xeu_A           95 NR-LKNLNGI--------------------PS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI-V-MLGF  148 (263)
T ss_dssp             SC-CSCCTTC--------------------CC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC-G-GGGG
T ss_pred             Cc-cCCcCcc--------------------cc--CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC-h-HHcc
Confidence            53 2222210                    01  34555555556555553 355556666666666554432 2 3444


Q ss_pred             CCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc
Q 006695          237 LKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL  277 (635)
Q Consensus       237 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l  277 (635)
                      +++|+.|++++|.+.+.  ..+..+++|+.|++++|.++..
T Consensus       149 l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          149 LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            55555555555444433  3344444444444444444433

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.58  E-value=1.5e-17  Score=184.73  Aligned_cols=199  Identities=16%  Similarity=0.126  Sum_probs=126.2

Q ss_pred             CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCc-------------cCCCC-CCCCCcEEe-cCCCCCC
Q 006695          119 LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRS-------------FPSNL-HFMSPIKID-FSSCFNL  183 (635)
Q Consensus       119 l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~-------------lp~~~-~l~~L~~L~-l~~c~~l  183 (635)
                      +...++|+.|+|++| .++.+|..++.+++|+.|++++|..+..             .|..+ .+++|+.|+ ++. +  
T Consensus       345 ~~~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~-n--  420 (567)
T 1dce_A          345 SATDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-A--  420 (567)
T ss_dssp             CSTTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH-H--
T ss_pred             cccCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhh-c--
Confidence            456677777888776 4457777888888888877755431111             11111 222222222 111 0  


Q ss_pred             CccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCC
Q 006695          184 TEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMES  263 (635)
Q Consensus       184 ~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~  263 (635)
                           .+.+|+.+.+++|.++.+|.     ..|+.|+|++|.+.+ +|. ++.+++|+.|+|++|.+. .+|..++.+++
T Consensus       421 -----~~~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~  487 (567)
T 1dce_A          421 -----YLDDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRC  487 (567)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             -----ccchhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCC
Confidence                 01123334444444444432     247778888877655 554 777888888888887766 66777888888


Q ss_pred             CCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc--cccccCCCCccEEeccCCCCCCcCCCC----
Q 006695          264 VKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL--PASITQLSQLRSLHLKDCSMLSSLPEL----  337 (635)
Q Consensus       264 L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l--p~~l~~l~~L~~L~L~~n~~l~~lp~l----  337 (635)
                      |+.|+|++|.|+.+| .+          ..+++|+.|+|++|+++.+  |..+..+++|+.|+|++|++.+..|..    
T Consensus       488 L~~L~Ls~N~l~~lp-~l----------~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~  556 (567)
T 1dce_A          488 LEVLQASDNALENVD-GV----------ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA  556 (567)
T ss_dssp             CCEEECCSSCCCCCG-GG----------TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH
T ss_pred             CCEEECCCCCCCCCc-cc----------CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH
Confidence            888888888888776 44          4457788888888888777  777888888888888887766554432    


Q ss_pred             --CCccceec
Q 006695          338 --PQSLELLD  345 (635)
Q Consensus       338 --~~sL~~L~  345 (635)
                        +++|+.|+
T Consensus       557 ~~lp~L~~L~  566 (567)
T 1dce_A          557 EMLPSVSSIL  566 (567)
T ss_dssp             HHCTTCSEEE
T ss_pred             HHCcccCccC
Confidence              46777765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=135.19  Aligned_cols=131  Identities=18%  Similarity=0.213  Sum_probs=110.3

Q ss_pred             cCCcceEEecccccc--ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEE
Q 006695          190 SGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCI  267 (635)
Q Consensus       190 ~~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L  267 (635)
                      +++|++|++++|.++  .+|..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            467899999999998  8888889999999999999987665  678889999999999999888788888889999999


Q ss_pred             EecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc----cccCCCCccEEeccCCCC
Q 006695          268 SLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA----SITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       268 ~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~----~l~~l~~L~~L~L~~n~~  330 (635)
                      ++++|.++.+|..        ..+..+++|+.|++++|.+..+|.    .+..+++|++|++++|..
T Consensus       101 ~Ls~N~l~~~~~~--------~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          101 NLSGNKLKDISTL--------EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             ECBSSSCCSSGGG--------GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             eccCCccCcchhH--------HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            9999999887621        123556889999999999888886    678889999999988764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.56  E-value=5.2e-15  Score=148.32  Aligned_cols=167  Identities=19%  Similarity=0.232  Sum_probs=109.3

Q ss_pred             CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695          191 GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE  270 (635)
Q Consensus       191 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~  270 (635)
                      .++..++++++.+++++ .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|+.|+++
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            34556666677777666 56667777777777776543 34 56667777777777776555433  6777777777777


Q ss_pred             CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC--CCCccceecccc
Q 006695          271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE--LPQSLELLDAEN  348 (635)
Q Consensus       271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~--l~~sL~~L~l~~  348 (635)
                      +|+++.+|..           .. ++|+.|++++|+++.++ .+..+++|+.|++++|++.+ ++.  .+++|+.|++++
T Consensus        94 ~N~l~~l~~~-----------~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~  159 (263)
T 1xeu_A           94 RNRLKNLNGI-----------PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHG  159 (263)
T ss_dssp             SSCCSCCTTC-----------CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTT
T ss_pred             CCccCCcCcc-----------cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCC
Confidence            7777766541           11 67777777777777765 46777777777777765543 343  246777777777


Q ss_pred             cccccccCccccCccccchhhhhhhhhccc
Q 006695          349 CKQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       349 c~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      |.....  ..+..+++|+.+++++|++...
T Consensus       160 N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          160 NEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             SCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            765443  5566777777777777776554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=2.4e-14  Score=130.22  Aligned_cols=126  Identities=20%  Similarity=0.225  Sum_probs=104.0

Q ss_pred             cCCcceEEecccccc--ccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEE
Q 006695          190 SGNITDLILSETAIQ--EVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCI  267 (635)
Q Consensus       190 ~~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L  267 (635)
                      +++++.|++++|.++  .+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            467888999999888  7888888899999999999887665  678889999999999988888788888888999999


Q ss_pred             EecCCCccccC--chhcccccchhhccCCCCccEEEcCCCCCCcccc----cccCCCCccEEeccC
Q 006695          268 SLERTAITELP--SSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA----SITQLSQLRSLHLKD  327 (635)
Q Consensus       268 ~L~~n~l~~lp--~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~----~l~~l~~L~~L~L~~  327 (635)
                      ++++|.++.+|  ..+          ..+++|++|++++|.++.+|.    .+..+++|+.|++++
T Consensus        94 ~ls~N~i~~~~~~~~~----------~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPL----------KKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGG----------GGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHH----------hhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999888765  333          456788899999988888775    578888888888763

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.53  E-value=1.2e-17  Score=185.63  Aligned_cols=214  Identities=14%  Similarity=0.119  Sum_probs=151.1

Q ss_pred             CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEe-
Q 006695           75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLC-  153 (635)
Q Consensus        75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~-  153 (635)
                      ..++|+.|+|++|+++.+|..++.+++|+.|++++|..+...|.          .+..+...+..|..++.+++|+.|+ 
T Consensus       347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~----------ll~~~~~~~~~~~~l~~l~~L~~L~~  416 (567)
T 1dce_A          347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL----------LMRALDPLLYEKETLQYFSTLKAVDP  416 (567)
T ss_dssp             TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH----------HHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHH----------HHHhcccccCCHHHHHHHHhcccCcc
Confidence            45677888888888888888888888888888766542111110          0111224455666777777777777 


Q ss_pred             ecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhc
Q 006695          154 FEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS  233 (635)
Q Consensus       154 L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~  233 (635)
                      ++.+. +         ..|..+.++++ .++.++.  ..|+.|+|++|.|+++|. ++.+++|+.|+|++|.+. .+|..
T Consensus       417 l~~n~-~---------~~L~~l~l~~n-~i~~l~~--~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~  481 (567)
T 1dce_A          417 MRAAY-L---------DDLRSKFLLEN-SVLKMEY--ADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPA  481 (567)
T ss_dssp             GGHHH-H---------HHHHHHHHHHH-HHHHHHH--TTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGG
T ss_pred             hhhcc-c---------chhhhhhhhcc-cccccCc--cCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchh
Confidence            44321 1         11222222221 1222211  358888999999999987 899999999999998877 77888


Q ss_pred             ccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcccc--CchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695          234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITEL--PSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP  311 (635)
Q Consensus       234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~l--p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp  311 (635)
                      ++.+++|+.|+|++|.+.+ +| .++.+++|+.|+|++|.|+.+  |..+          ..+++|+.|+|++|.++.+|
T Consensus       482 ~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l----------~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          482 LAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPL----------VSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             GGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGG----------GGCTTCCEEECTTSGGGGSS
T ss_pred             hhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHH----------hcCCCCCEEEecCCcCCCCc
Confidence            9999999999999988776 66 788999999999999999987  6655          44588999999999988887


Q ss_pred             ccc----cCCCCccEEec
Q 006695          312 ASI----TQLSQLRSLHL  325 (635)
Q Consensus       312 ~~l----~~l~~L~~L~L  325 (635)
                      +.+    ..+++|+.|++
T Consensus       550 ~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          550 GIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCTTHHHHHCTTCSEEEC
T ss_pred             cHHHHHHHHCcccCccCC
Confidence            643    34889998864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=1.4e-14  Score=165.92  Aligned_cols=144  Identities=23%  Similarity=0.197  Sum_probs=86.4

Q ss_pred             CCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695          191 GNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE  270 (635)
Q Consensus       191 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~  270 (635)
                      .+|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..|+++++|++|+|++|.+. .+|..++.+++|+.|+|+
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECC
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECC
Confidence            4566677777777777766667777777777777665 66666777777777777776655 556667777777777777


Q ss_pred             CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCC-CccEEeccCCCCCCcCCCCCCccceecccc
Q 006695          271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLS-QLRSLHLKDCSMLSSLPELPQSLELLDAEN  348 (635)
Q Consensus       271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~-~L~~L~L~~n~~l~~lp~l~~sL~~L~l~~  348 (635)
                      +|.|+.+|..+          ..+++|+.|+|++|.+... |..+..+. .+..|+|++|.+.+.+|   ..|+.|+++.
T Consensus       302 ~N~l~~lp~~~----------~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p---~~l~~l~l~~  368 (727)
T 4b8c_D          302 DNMVTTLPWEF----------GNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP---HERRFIEINT  368 (727)
T ss_dssp             SSCCCCCCSST----------TSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC---CC--------
T ss_pred             CCCCCccChhh----------hcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc---cccceeEeec
Confidence            77777766654          3346677777777776543 33333321 12235666666655544   4566677766


Q ss_pred             c
Q 006695          349 C  349 (635)
Q Consensus       349 c  349 (635)
                      |
T Consensus       369 n  369 (727)
T 4b8c_D          369 D  369 (727)
T ss_dssp             -
T ss_pred             c
Confidence            6

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.51  E-value=5.9e-14  Score=133.60  Aligned_cols=131  Identities=22%  Similarity=0.291  Sum_probs=102.1

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccchh-cccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLST-SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~-~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      +.+++++++++++|..+..  +|++|++++|.+.+..+. .+..+++|++|+|++|.+.+..|..|..+++|++|+|++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            5778888888888876543  788888888877665554 4778888888888888888877888888888888888888


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCcc-cccccCCCCccEEeccCCCCCCcCC
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL-PASITQLSQLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l-p~~l~~l~~L~~L~L~~n~~l~~lp  335 (635)
                      +|+.++..         .+..+++|++|+|++|+++.+ |..+..+++|++|+|++|++....+
T Consensus        89 ~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           89 KIKEISNK---------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCCEECSS---------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             cCCccCHH---------HhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            88877653         234568888888888888766 5568888999999999988776544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.46  E-value=4.1e-13  Score=127.86  Aligned_cols=125  Identities=20%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA  273 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  273 (635)
                      +.++++++.++++|..+.  ++|++|++++|.+. .+|..+.++++|+.|+|++|.+.+..+..|..+++|++|+|++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            456667777777776543  46777777776654 455667777777777777777766666667777777777777777


Q ss_pred             ccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695          274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~  330 (635)
                      |+.++..         .+..+++|+.|+|++|.++.+|.. +..+++|+.|+|++|+.
T Consensus        90 l~~i~~~---------~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPR---------TFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTT---------TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHH---------HhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            7766542         234456777777777777777654 56777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.45  E-value=1.7e-14  Score=165.15  Aligned_cols=59  Identities=20%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             ccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhh
Q 006695          199 SETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEIL  258 (635)
Q Consensus       199 ~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l  258 (635)
                      ++|.|+.+|..++.+++|++|+|++|.+. .+|..|+.+++|+.|+|++|.+.+.+|..+
T Consensus       278 s~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          278 SHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             cCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence            33334444444555555555555555442 444445555555555555555555544444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.45  E-value=5.1e-13  Score=125.18  Aligned_cols=132  Identities=19%  Similarity=0.272  Sum_probs=104.6

Q ss_pred             cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      .+.+++++++++.+|..+.  ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4678888888888886543  68899999998887666667788899999999988887766677888899999999999


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCC
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp  335 (635)
                      .++.+|...         +..+++|+.|++++|.++.+|.. +..+++|++|++++|++....|
T Consensus        87 ~l~~~~~~~---------~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGV---------FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTT---------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHH---------hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            988877532         34568889999999998888876 4778888888888887665443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.44  E-value=1.7e-13  Score=128.36  Aligned_cols=125  Identities=16%  Similarity=0.146  Sum_probs=61.4

Q ss_pred             CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      +|++|++++|.++.+|......++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus        20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~   97 (176)
T 1a9n_A           20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   97 (176)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence            45555555555555543222222566666666555443  3455555555555555554433333345555555555555


Q ss_pred             CCccccCc--hhcccccchhhccCCCCccEEEcCCCCCCccccc----ccCCCCccEEeccCC
Q 006695          272 TAITELPS--SFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS----ITQLSQLRSLHLKDC  328 (635)
Q Consensus       272 n~l~~lp~--~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~----l~~l~~L~~L~L~~n  328 (635)
                      |.|+.+|.  .+          ..+++|+.|++++|.+..+|..    +..+++|+.|++++|
T Consensus        98 N~i~~~~~~~~l----------~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           98 NSLVELGDLDPL----------ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCCCCGGGGGGG----------GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CcCCcchhhHhh----------hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            55554443  11          2334555555555555544442    444444444444443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.43  E-value=6.5e-13  Score=137.53  Aligned_cols=253  Identities=11%  Similarity=0.020  Sum_probs=146.3

Q ss_pred             cceEeecCCCCCC--CCCCCCCCCCceEEEcCCCCCccccc-cCCC--------CCCCcEEEccCCCCCCCCC--CCCCC
Q 006695           56 ELRYLHWHEYPSK--ALPFDFEPENLVKLNLPYSKVVQIWE-GKKR--------AFKLKYVDIHNSQYLIRMP--DLSET  122 (635)
Q Consensus        56 ~L~~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~--------l~~L~~L~Ls~n~~~~~~p--~l~~l  122 (635)
                      +|+.|++++|.+.  ..+... .+.+..+.+..+   .+|+ .+.+        +++|+.|+|.+ . ++.++  .|.++
T Consensus        50 ~L~~LdLs~n~i~~~~~~~~~-~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~  123 (329)
T 3sb4_A           50 SLKVLDISNAEIKMYSGKAGT-YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGC  123 (329)
T ss_dssp             TCCEEEEEEEEECCEEESSSS-SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTC
T ss_pred             cCeEEecCcceeEEecCcccc-cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcC
Confidence            4777777777766  222211 111344444444   2332 2445        78888888877 3 33444  37788


Q ss_pred             CCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC---CCCccCCCC--CCCCCc-EEecCCCCCCCcc----CcccCC
Q 006695          123 PNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK---SLRSFPSNL--HFMSPI-KIDFSSCFNLTEF----PQISGN  192 (635)
Q Consensus       123 ~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~---~l~~lp~~~--~l~~L~-~L~l~~c~~l~~~----p~~~~~  192 (635)
                      ++|+.|++.+|.....-+.+|..+.++..+.+....   ....+....  .+..|+ .+.+.....+...    .....+
T Consensus       124 ~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~  203 (329)
T 3sb4_A          124 DNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRD  203 (329)
T ss_dssp             TTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGG
T ss_pred             cccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccc
Confidence            888888888776555555566666555555543311   111111111  333444 3333332221110    011234


Q ss_pred             cceEEeccccccccCccc-ccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCC-EEEec
Q 006695          193 ITDLILSETAIQEVPSSI-ECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVK-CISLE  270 (635)
Q Consensus       193 L~~L~L~~n~i~~lp~~~-~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~-~L~L~  270 (635)
                      ++.+.+.++-...-...+ ..+++|+.|+|++|.+....+..|.++++|+.|++.+| +...-+.+|.++++|+ .+.+.
T Consensus       204 ~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          204 INFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             CSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEEC
T ss_pred             cceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEc
Confidence            555555544211111111 23778888888887777666677888888888888875 5445556788888888 88887


Q ss_pred             CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEec
Q 006695          271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHL  325 (635)
Q Consensus       271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L  325 (635)
                      + .++.++.         ..+.++++|+.|++++|.+..|+. .+.++++|+.|+.
T Consensus       283 ~-~l~~I~~---------~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          283 A-SVTAIEF---------GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             T-TCCEECT---------TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             c-cceEEch---------hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            7 6777654         235666888888888888888876 4678888887753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.43  E-value=4.1e-13  Score=124.58  Aligned_cols=79  Identities=16%  Similarity=0.215  Sum_probs=46.1

Q ss_pred             CCceEEEcCCCCCc--cccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           77 ENLVKLNLPYSKVV--QIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        77 ~~L~~L~L~~n~l~--~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      ++|++|++++|.++  .+|..+..+++|++|++++|.+... +.+..+++|++|++++|.....+|..+..+++|+.|++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            46667777777766  6666666667777777777664433 55666666666666666444434444444444444444


Q ss_pred             cC
Q 006695          155 EG  156 (635)
Q Consensus       155 ~~  156 (635)
                      ++
T Consensus       103 s~  104 (168)
T 2ell_A          103 SG  104 (168)
T ss_dssp             BS
T ss_pred             cC
Confidence            44

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=3.1e-13  Score=139.97  Aligned_cols=260  Identities=15%  Similarity=0.110  Sum_probs=175.3

Q ss_pred             hhcC-CCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-C--------CCCceEEEcC
Q 006695           17 AFAN-MPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-E--------PENLVKLNLP   85 (635)
Q Consensus        17 ~f~~-l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~--------l~~L~~L~L~   85 (635)
                      .+.. +++|+.|+|++|++...       ....+  .++. ++.+....+   .+|.. | +        +.+|+.|+|+
T Consensus        43 ~l~~~l~~L~~LdLs~n~i~~~-------~~~~~--~~~~-~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~  109 (329)
T 3sb4_A           43 HLRDEFPSLKVLDISNAEIKMY-------SGKAG--TYPN-GKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILS  109 (329)
T ss_dssp             HHHHSCTTCCEEEEEEEEECCE-------EESSS--SSGG-GCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBC
T ss_pred             HHHHhhccCeEEecCcceeEEe-------cCccc--cccc-ccccccccc---ccCHHHhcccccccccccCCCcEEECC
Confidence            3444 78899999999877611       11111  2222 344444444   56665 5 6        8999999999


Q ss_pred             CCCCcccccc-CCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCC----CCcccCccccCCCCCC-EEeecCCC
Q 006695           86 YSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCI----NLTCVPSSVQNFNHLS-MLCFEGCK  158 (635)
Q Consensus        86 ~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~----~l~~~~~~i~~l~~L~-~L~L~~~~  158 (635)
                      + .++.+++. +.++++|+.|++++|.+....+ .|.++.++..+.+....    ....-...+..+..|+ .+.+....
T Consensus       110 ~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~  188 (329)
T 3sb4_A          110 E-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG  188 (329)
T ss_dssp             T-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC
T ss_pred             c-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC
Confidence            9 89988754 7899999999999998654444 37777777777665421    1111123355556666 45554322


Q ss_pred             CCCcc--CCCCCCCCCcEEecCCCCCCCc---cCcccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchh
Q 006695          159 SLRSF--PSNLHFMSPIKIDFSSCFNLTE---FPQISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLST  232 (635)
Q Consensus       159 ~l~~l--p~~~~l~~L~~L~l~~c~~l~~---~p~~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~  232 (635)
                      .+...  ...+...++..+.+.+.-....   +.....+|+.|+|++|.++.+|.. |.++++|+.|+|.+| +...-+.
T Consensus       189 ~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~  267 (329)
T 3sb4_A          189 KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQR  267 (329)
T ss_dssp             CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTT
T ss_pred             cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHH
Confidence            22110  0112445566666655311111   112247899999999999999876 999999999999997 5556667


Q ss_pred             cccCCCCCc-EEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEE
Q 006695          233 SICKLKSLH-VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLN  301 (635)
Q Consensus       233 ~~~~l~~L~-~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~  301 (635)
                      .|.++++|+ .+++.+ .+...-+.+|.++++|+.|++++|.++.++..         .+.++++|+.++
T Consensus       268 aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~---------aF~~~~~L~~ly  327 (329)
T 3sb4_A          268 VFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE---------LFGNGVPSKLIY  327 (329)
T ss_dssp             TTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT---------TTCTTCCCCEEE
T ss_pred             HhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh---------hhcCCcchhhhc
Confidence            899999999 999998 66666678999999999999999999999863         345567777775

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=124.12  Aligned_cols=125  Identities=19%  Similarity=0.258  Sum_probs=107.0

Q ss_pred             EEecCCCCCCCccCc-ccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC
Q 006695          174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE  252 (635)
Q Consensus       174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~  252 (635)
                      .+++++ ..++.+|. .+.++++|++++|.|+.+|..+..+++|+.|+|++|.+.+..+..|.++++|++|+|++|.+.+
T Consensus        14 ~l~~~~-~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           14 VVRCSN-KGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             EEECTT-SCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             EEEcCC-CCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            344444 23445553 3468999999999999999999999999999999999998888899999999999999999998


Q ss_pred             cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          253 RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       253 ~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                      ..+..|..+++|+.|+|++|.|+.+|..         .+..+++|+.|+|++|.+.
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~---------~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEG---------AFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTT---------TTTTCTTCCEEECCSSCEE
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChh---------hhhcCccccEEEeCCCCee
Confidence            8888999999999999999999998863         2355689999999999864

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=5.9e-13  Score=120.91  Aligned_cols=125  Identities=21%  Similarity=0.269  Sum_probs=102.0

Q ss_pred             cCCCccEEEeeccccc-ccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccc-cCchhcccccchh
Q 006695          212 CLTNLEKLYINRCMRL-KRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE-LPSSFANLEGLKD  289 (635)
Q Consensus       212 ~l~~L~~L~L~~n~~~-~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~  289 (635)
                      ..++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.++. +|..+        
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--------   84 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA--------   84 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--------
Confidence            4578999999999987 68888889999999999999987765  778899999999999999997 55543        


Q ss_pred             hccCCCCccEEEcCCCCCCccc--ccccCCCCccEEeccCCCCCCcCC---C---CCCccceecccc
Q 006695          290 LYIGGSSLRQLNLSRNDSESLP--ASITQLSQLRSLHLKDCSMLSSLP---E---LPQSLELLDAEN  348 (635)
Q Consensus       290 l~~~~~~L~~L~Ls~n~~~~lp--~~l~~l~~L~~L~L~~n~~l~~lp---~---l~~sL~~L~l~~  348 (635)
                        ..+++|++|++++|.++.+|  ..+..+++|++|++++|++.+..+   .   .+++|+.|++++
T Consensus        85 --~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           85 --EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             --HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             --hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence              34688999999999998876  678999999999999987655443   1   246788887753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.40  E-value=7.5e-13  Score=125.90  Aligned_cols=124  Identities=23%  Similarity=0.295  Sum_probs=103.6

Q ss_pred             EEecCCCCCCCccCc-ccCCcceEEeccccccccCcc--cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCC
Q 006695          174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPSS--IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK  250 (635)
Q Consensus       174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~--~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~  250 (635)
                      .++++++ .++.+|. ...++++|++++|.|+.++..  ++.+++|++|+|++|.+.+..|..|.++++|++|+|++|.+
T Consensus        12 ~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           12 TVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            4444442 3455554 335889999999999999864  89999999999999999988899999999999999999999


Q ss_pred             CCcchhhhcCCCCCCEEEecCCCcccc-CchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          251 LERFPEILEKMESVKCISLERTAITEL-PSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       251 ~~~~~~~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                      .+..+..+..+++|+.|++++|+|+.+ |..+          ..+++|+.|+|++|.+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~----------~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----------EHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSS----------TTCTTCCEEECTTCCBC
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHh----------hcCCCCCEEEeCCCCcc
Confidence            988888899999999999999999976 4333          55689999999999975

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.34  E-value=7.9e-11  Score=125.01  Aligned_cols=186  Identities=11%  Similarity=0.042  Sum_probs=102.6

Q ss_pred             cceEeecCCCCCCCCCCC-CCCCCceEEEcCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecC
Q 006695           56 ELRYLHWHEYPSKALPFD-FEPENLVKLNLPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKN  132 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~-~~l~~L~~L~L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~  132 (635)
                      +|+.+.+..+ ++.++.. |.-.+|+.+.++. .++.+. ..+.++.+|+.++|.+|.+...... |. ..+|+.+.|..
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~  212 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPV  212 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCT
T ss_pred             CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCC
Confidence            3666666544 5555554 4334677777775 566665 3456777777777777664332222 44 47777777764


Q ss_pred             CCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCc-cc
Q 006695          133 CINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SI  210 (635)
Q Consensus       133 n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~  210 (635)
                      + ....-..+|.++++|+.+.+.++  ++.++... .-                     .+|+.+.+ .+.++.++. .|
T Consensus       213 ~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~---------------------~~L~~i~l-p~~i~~I~~~aF  267 (401)
T 4fdw_A          213 T-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE---------------------SGITTVKL-PNGVTNIASRAF  267 (401)
T ss_dssp             T-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT---------------------CCCSEEEE-ETTCCEECTTTT
T ss_pred             c-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc---------------------CCccEEEe-CCCccEEChhHh
Confidence            3 22233345777777777777642  33333211 11                     23444555 334555543 36


Q ss_pred             ccCCCccEEEeeccccc-----ccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695          211 ECLTNLEKLYINRCMRL-----KRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE  270 (635)
Q Consensus       211 ~~l~~L~~L~L~~n~~~-----~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~  270 (635)
                      .++++|+.+++.++...     ..-+..|.++++|+.+++.+ ++...-..+|.++++|+.+.+.
T Consensus       268 ~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          268 YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP  331 (401)
T ss_dssp             TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred             hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence            77777777777765443     23344555666666666653 2333333455555555555553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.32  E-value=1.6e-11  Score=114.92  Aligned_cols=128  Identities=23%  Similarity=0.298  Sum_probs=102.8

Q ss_pred             EEecCCCCCCCccCc-ccCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCC
Q 006695          174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL  251 (635)
Q Consensus       174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~  251 (635)
                      .++++++ .++.+|. .+.+|++|++++|.++++|.. +..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus        11 ~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           11 EIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ   89 (177)
T ss_dssp             EEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             EEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence            3444332 3444443 346889999999999988765 689999999999999988777777889999999999999988


Q ss_pred             CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695          252 ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP  311 (635)
Q Consensus       252 ~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp  311 (635)
                      +..+..+..+++|+.|++++|.++.+|..+         +..+++|+.|+|++|.+...+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~---------~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           90 SLPNGVFDKLTQLKELALDTNQLKSVPDGI---------FDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTT---------TTTCTTCCEEECCSSCBCCCH
T ss_pred             ccCHHHhhCCcccCEEECcCCcceEeCHHH---------hcCCcccCEEEecCCCeeccC
Confidence            877778899999999999999999888642         345689999999999976543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.28  E-value=3.3e-12  Score=119.56  Aligned_cols=131  Identities=14%  Similarity=0.086  Sum_probs=93.1

Q ss_pred             hhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccccc
Q 006695           16 QAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEG   95 (635)
Q Consensus        16 ~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~   95 (635)
                      ..|.++.+|+.|++++|.++.         ++ ++.....+|++|++++|.+..++..-.+++|++|++++|.++.+|..
T Consensus        13 ~~~~~~~~L~~L~l~~n~l~~---------i~-~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~   82 (176)
T 1a9n_A           13 AQYTNAVRDRELDLRGYKIPV---------IE-NLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEG   82 (176)
T ss_dssp             CEEECTTSCEEEECTTSCCCS---------CC-CGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSC
T ss_pred             HhcCCcCCceEEEeeCCCCch---------hH-HhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcc
Confidence            457778888888888887762         22 34444435888888888888773333678888888888888887766


Q ss_pred             C-CCCCCCcEEEccCCCCCCCCC---CCCCCCCCCEEeecCCCCCcccCcc----ccCCCCCCEEeecCCC
Q 006695           96 K-KRAFKLKYVDIHNSQYLIRMP---DLSETPNLERTNLKNCINLTCVPSS----VQNFNHLSMLCFEGCK  158 (635)
Q Consensus        96 ~-~~l~~L~~L~Ls~n~~~~~~p---~l~~l~~L~~L~L~~n~~l~~~~~~----i~~l~~L~~L~L~~~~  158 (635)
                      + ..+++|++|+|++|++. .+|   .+..+++|+.|++++|.. ..+|..    +..+++|+.|++++|.
T Consensus        83 ~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           83 LDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             HHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             hhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCCcCC
Confidence            5 77888888888888753 344   367778888888888754 345553    7777888888877764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.25  E-value=2.3e-11  Score=113.58  Aligned_cols=107  Identities=17%  Similarity=0.208  Sum_probs=61.9

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA  273 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  273 (635)
                      +.++++++.++++|..+.  ++|++|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|+.|+|++|+
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            567777777777776553  666777777766666556666666666666666665555444445555555555555555


Q ss_pred             ccccCchhcccccchhhccCCCCccEEEcCCCCCCccc
Q 006695          274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLP  311 (635)
Q Consensus       274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp  311 (635)
                      |+.+|..         .+..+++|+.|+|++|.+...+
T Consensus        93 l~~l~~~---------~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           93 LKSIPRG---------AFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CCCCCTT---------TTTTCTTCSEEECCSSCBCTTB
T ss_pred             cceeCHH---------HhccccCCCEEEeCCCCccccc
Confidence            5555432         1123345555555555544333

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.23  E-value=4.3e-11  Score=111.24  Aligned_cols=85  Identities=21%  Similarity=0.247  Sum_probs=53.0

Q ss_pred             cceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      .+.+++++|.++++|..+.  ++|+.|+|++|.+.+..|..|.++++|++|+|++|.+.+..+..|..+++|+.|+|++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            4567777777777776552  66677777776666655666666666666666666555544445555555555555555


Q ss_pred             CccccCc
Q 006695          273 AITELPS  279 (635)
Q Consensus       273 ~l~~lp~  279 (635)
                      +|+.+|.
T Consensus        89 ~l~~~~~   95 (170)
T 3g39_A           89 QLKSIPR   95 (170)
T ss_dssp             CCCCCCT
T ss_pred             ccCEeCH
Confidence            5555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.20  E-value=3e-13  Score=129.29  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=72.4

Q ss_pred             cccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchh
Q 006695          202 AIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSF  281 (635)
Q Consensus       202 ~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~  281 (635)
                      .++.+|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+| .+
T Consensus        36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~  111 (198)
T 1ds9_A           36 PIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GI  111 (198)
T ss_dssp             TCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred             cHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence            344455566666666666666666544 44 5566666666666666544 45555555666777777777666654 22


Q ss_pred             cccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcC
Q 006695          282 ANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSL  334 (635)
Q Consensus       282 ~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~l  334 (635)
                                ..+++|+.|++++|.++.++.  .+..+++|++|++++|++.+.+
T Consensus       112 ----------~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~  156 (198)
T 1ds9_A          112 ----------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             ----------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred             ----------ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence                      223566777777777666654  4666777777777776654443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.19  E-value=1.5e-13  Score=131.35  Aligned_cols=135  Identities=21%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             cccCCCccEEEeecccccccchh------cccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcc
Q 006695          210 IECLTNLEKLYINRCMRLKRLST------SICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFAN  283 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n~~~~~lp~------~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~  283 (635)
                      +.....++.++++.+.+.+..|.      .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~   91 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAV   91 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHH
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhc
Confidence            44556667777777776666554      88899999999999987766 66 888999999999999999988865533


Q ss_pred             cccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCC----CCCCccceecccccccccccCc
Q 006695          284 LEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP----ELPQSLELLDAENCKQLQFIPE  357 (635)
Q Consensus       284 l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp----~l~~sL~~L~l~~c~~l~~~~~  357 (635)
                                +++|+.|++++|+++.+| .+..+++|++|++++|++...-+    ..+++|++|++++|+.....|.
T Consensus        92 ----------~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           92 ----------ADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             ----------HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             ----------CCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence                      478999999999999988 68889999999999987654221    1357899999999976555443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.18  E-value=1.8e-09  Score=114.54  Aligned_cols=208  Identities=10%  Similarity=0.119  Sum_probs=109.9

Q ss_pred             CCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCC-CCCCCCcEEec
Q 006695          101 KLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSN-LHFMSPIKIDF  177 (635)
Q Consensus       101 ~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~-~~l~~L~~L~l  177 (635)
                      +|+.+.+..+  +..++  .|.+ .+|+.+.+.. .....-..+|..+++|+.+++.+|+ ++.++.. +...+|+.+.+
T Consensus       136 ~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l  210 (401)
T 4fdw_A          136 QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL  210 (401)
T ss_dssp             CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred             CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence            4555555444  22233  2444 2455555553 1222222345555555555555432 3333322 23344444444


Q ss_pred             CCCCCCCccCcc----cCCcceEEeccccccccCcc-cccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCC-
Q 006695          178 SSCFNLTEFPQI----SGNITDLILSETAIQEVPSS-IECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKL-  251 (635)
Q Consensus       178 ~~c~~l~~~p~~----~~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~-  251 (635)
                      ..  .++.++..    ..+|+.+.+..+ ++.++.. |.+ .+|+.+.+.+ .+...-...|.++++|+.+++.++... 
T Consensus       211 p~--~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~  285 (401)
T 4fdw_A          211 PV--TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFND  285 (401)
T ss_dssp             CT--TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCC
T ss_pred             CC--chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccC
Confidence            32  13332211    134555555542 4555543 444 6777777743 344444566777777777777765443 


Q ss_pred             ----CcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEecc
Q 006695          252 ----ERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLK  326 (635)
Q Consensus       252 ----~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~  326 (635)
                          ......|.++++|+.+.+. +.++.++..         .+.++++|+.++|..+ ++.|+. .+.++ +|+.|++.
T Consensus       286 ~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~---------aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~  353 (401)
T 4fdw_A          286 DPEAMIHPYCLEGCPKLARFEIP-ESIRILGQG---------LLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVE  353 (401)
T ss_dssp             CTTCEECTTTTTTCTTCCEECCC-TTCCEECTT---------TTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEEC
T ss_pred             CcccEECHHHhhCCccCCeEEeC-CceEEEhhh---------hhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEc
Confidence                2344567777777777776 346666542         3455677777777444 666654 35666 77777777


Q ss_pred             CCCC
Q 006695          327 DCSM  330 (635)
Q Consensus       327 ~n~~  330 (635)
                      +|..
T Consensus       354 ~n~~  357 (401)
T 4fdw_A          354 GTTP  357 (401)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            7644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.13  E-value=2.1e-10  Score=106.99  Aligned_cols=104  Identities=15%  Similarity=0.227  Sum_probs=84.8

Q ss_pred             ccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCC
Q 006695          216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGS  295 (635)
Q Consensus       216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~  295 (635)
                      -+.+++++|.+ +.+|..+.  ++|++|+|++|.+.+..|..|..+++|+.|+|++|+|+.+|...         +..++
T Consensus        14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~---------~~~l~   81 (174)
T 2r9u_A           14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV---------FDKLT   81 (174)
T ss_dssp             SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT---------TTTCT
T ss_pred             CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH---------hCCcc
Confidence            36788888776 45666554  88999999999988888888999999999999999999887642         34568


Q ss_pred             CccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCC
Q 006695          296 SLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSML  331 (635)
Q Consensus       296 ~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l  331 (635)
                      +|+.|+|++|+++.+|.. +..+++|++|+|++|++.
T Consensus        82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             hhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            899999999999888875 788889999998887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.08  E-value=1.1e-08  Score=108.32  Aligned_cols=287  Identities=13%  Similarity=0.112  Sum_probs=144.1

Q ss_pred             cccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCC
Q 006695            9 TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPY   86 (635)
Q Consensus         9 ~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~   86 (635)
                      .++.|...||.++++|+.+.|..+ ++         .+......-..+|+.+.+..+ ++.++.. | ...+|+.+.++.
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~---------~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPST-VR---------EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCTT-CC---------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCCC-cc---------CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccC
Confidence            356788889999999999988642 43         333333332234777777543 5666654 4 566777666654


Q ss_pred             CCCcccc-ccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCC
Q 006695           87 SKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPS  165 (635)
Q Consensus        87 n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~  165 (635)
                      + ++.+. ..+..+..++........ ......|.++++|+.+.+.++ ....-...|..+.+|+.+.+..+  ++.++.
T Consensus       127 ~-l~~i~~~aF~~~~~~~~~~~~~~~-~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~  201 (394)
T 4fs7_A          127 M-LKSIGVEAFKGCDFKEITIPEGVT-VIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRD  201 (394)
T ss_dssp             T-CCEECTTTTTTCCCSEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECT
T ss_pred             c-eeeecceeeecccccccccCcccc-ccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCc
Confidence            3 33332 223344333222222211 111123777777777777653 22222345667777777776543  343333


Q ss_pred             CC--CCCCCcEEecCCCCC-CCccCcccCCcceEEeccccccccCc-ccccCCCccEEEeecccccccchhcccCCCCCc
Q 006695          166 NL--HFMSPIKIDFSSCFN-LTEFPQISGNITDLILSETAIQEVPS-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLH  241 (635)
Q Consensus       166 ~~--~l~~L~~L~l~~c~~-l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~  241 (635)
                      ..  .+..|+.+.+..... +........+|+.+.+..+ ++.+.. .+..+..|+.+.+..+. .......|..+..++
T Consensus       202 ~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~  279 (394)
T 4fs7_A          202 YCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK-LRIGGSLFYNCSGLK  279 (394)
T ss_dssp             TTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT-CEECSCTTTTCTTCC
T ss_pred             hhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc-ceeeccccccccccc
Confidence            22  444454444432110 0011111134555555432 233332 35566666666665532 223334455566666


Q ss_pred             EEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCc
Q 006695          242 VLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQL  320 (635)
Q Consensus       242 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L  320 (635)
                      .+......   .....|..+.+|+.+.+.++ ++.++.         ..+.++.+|+.++|..+ ++.|+. .+.++.+|
T Consensus       280 ~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~---------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L  345 (394)
T 4fs7_A          280 KVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGE---------EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSL  345 (394)
T ss_dssp             EEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECT---------TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTC
T ss_pred             eeccCcee---eccccccccccccccccccc-cceech---------hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCC
Confidence            66554421   12234556666666666443 444433         12344566666666433 555543 35566666


Q ss_pred             cEEeccC
Q 006695          321 RSLHLKD  327 (635)
Q Consensus       321 ~~L~L~~  327 (635)
                      +.+++..
T Consensus       346 ~~i~lp~  352 (394)
T 4fs7_A          346 SNINFPL  352 (394)
T ss_dssp             CEECCCT
T ss_pred             CEEEECc
Confidence            6666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.08  E-value=4.8e-10  Score=104.15  Aligned_cols=106  Identities=22%  Similarity=0.208  Sum_probs=87.1

Q ss_pred             cEEecCCCCCCCccCc-ccCCcceEEecccccccc-CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCC
Q 006695          173 IKIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK  250 (635)
Q Consensus       173 ~~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~  250 (635)
                      +.+++++ +.++.+|. ...++++|+|++|.|+++ |..+.++++|++|+|++|.+.+..+..|.++++|++|+|++|.+
T Consensus        12 ~~l~~s~-n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           12 TTVDCSG-KSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TEEECTT-SCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCC-CCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            3444444 23444553 346899999999999998 45699999999999999999887777889999999999999998


Q ss_pred             CCcchhhhcCCCCCCEEEecCCCccccCc
Q 006695          251 LERFPEILEKMESVKCISLERTAITELPS  279 (635)
Q Consensus       251 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~  279 (635)
                      .+..+..|..+++|+.|+|++|.++..+.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            88777789999999999999999885543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.01  E-value=3.8e-08  Score=104.18  Aligned_cols=290  Identities=16%  Similarity=0.120  Sum_probs=178.6

Q ss_pred             eecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-CCCCCceE
Q 006695            3 LDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-FEPENLVK   81 (635)
Q Consensus         3 LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~~l~~L~~   81 (635)
                      +++.. .+..|...||.++++|+.+++.++ ++         .+......-...|+.+.+..+ ++.+... |.-..+..
T Consensus        76 i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~---------~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~  143 (394)
T 4fs7_A           76 IKIPS-TVREIGEFAFENCSKLEIINIPDS-VK---------MIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKE  143 (394)
T ss_dssp             EECCT-TCCEECTTTTTTCTTCCEECCCTT-CC---------EECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSE
T ss_pred             EEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce---------EccchhhcccccchhhcccCc-eeeecceeeecccccc
Confidence            45553 477899999999999999999654 33         222322222223554444322 3333332 32222333


Q ss_pred             EEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCC
Q 006695           82 LNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCK  158 (635)
Q Consensus        82 L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~  158 (635)
                      ..+.. .+..+ ...+.++.+|+.+.+.++.  ..++  .|.++.+|+.+.+..+ ....-...+..+..|+.+.+..+.
T Consensus       144 ~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~  219 (394)
T 4fs7_A          144 ITIPE-GVTVIGDEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL  219 (394)
T ss_dssp             EECCT-TCCEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred             cccCc-cccccchhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence            33322 22223 2456788888888887653  2333  4788888888888764 222333457777788877765432


Q ss_pred             CCCccC-CCCCCCCCcEEecCCCCCCCccC----cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhc
Q 006695          159 SLRSFP-SNLHFMSPIKIDFSSCFNLTEFP----QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTS  233 (635)
Q Consensus       159 ~l~~lp-~~~~l~~L~~L~l~~c~~l~~~p----~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~  233 (635)
                        ..+. ..+...+|+.+.+..  .++.+.    ....+++.+.+..+...--...+..+..++.+.+....   .....
T Consensus       220 --~~i~~~~~~~~~l~~i~ip~--~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~  292 (394)
T 4fs7_A          220 --YYLGDFALSKTGVKNIIIPD--SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKT  292 (394)
T ss_dssp             --CEECTTTTTTCCCCEEEECT--TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTT
T ss_pred             --eEeehhhcccCCCceEEECC--CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---ecccc
Confidence              2222 223556777777653  222222    12256777777665433233457888888888776643   22345


Q ss_pred             ccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-
Q 006695          234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-  312 (635)
Q Consensus       234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-  312 (635)
                      |..+.+|+.+.+..+ ....-..+|.++.+|+.+.+.. .++.++.         ..+.++++|+.+++..+ ++.|+. 
T Consensus       293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~---------~aF~~c~~L~~i~lp~~-l~~I~~~  360 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGK---------RSFRGCTSLSNINFPLS-LRKIGAN  360 (394)
T ss_dssp             TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECT---------TTTTTCTTCCEECCCTT-CCEECTT
T ss_pred             ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhH---------HhccCCCCCCEEEECcc-ccEehHH
Confidence            778899999998763 4444456788999999999864 3666654         24566789999999876 777765 


Q ss_pred             cccCCCCccEEeccC
Q 006695          313 SITQLSQLRSLHLKD  327 (635)
Q Consensus       313 ~l~~l~~L~~L~L~~  327 (635)
                      .+.++.+|+.+++..
T Consensus       361 aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          361 AFQGCINLKKVELPK  375 (394)
T ss_dssp             TBTTCTTCCEEEEEG
T ss_pred             HhhCCCCCCEEEECC
Confidence            478888898888764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.97  E-value=1.6e-09  Score=112.74  Aligned_cols=105  Identities=20%  Similarity=0.161  Sum_probs=84.4

Q ss_pred             eEEeccc-cccccCcccccCCCccEEEeec-ccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          195 DLILSET-AIQEVPSSIECLTNLEKLYINR-CMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       195 ~L~L~~n-~i~~lp~~~~~l~~L~~L~L~~-n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      .++.+++ +++++|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+.+..|..|.++++|+.|+|++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4677777 8889998 88899999999986 8877777788889999999999999888888888888999999999999


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCcc
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL  310 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l  310 (635)
                      +|+.+|..+.         ..+ .|+.|+|.+|.+...
T Consensus        91 ~l~~~~~~~~---------~~~-~L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           91 ALESLSWKTV---------QGL-SLQELVLSGNPLHCS  118 (347)
T ss_dssp             CCSCCCSTTT---------CSC-CCCEEECCSSCCCCC
T ss_pred             ccceeCHHHc---------ccC-CceEEEeeCCCccCC
Confidence            8888876432         122 388888888876543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.86  E-value=1.1e-09  Score=114.88  Aligned_cols=135  Identities=17%  Similarity=0.132  Sum_probs=76.9

Q ss_pred             CcceEEeccccccc--cCcccccCCCccEEEeecccccccchhcc-----cCCCCCcEEecCCCCCCC----cchhhhcC
Q 006695          192 NITDLILSETAIQE--VPSSIECLTNLEKLYINRCMRLKRLSTSI-----CKLKSLHVLVLDDCSKLE----RFPEILEK  260 (635)
Q Consensus       192 ~L~~L~L~~n~i~~--lp~~~~~l~~L~~L~L~~n~~~~~lp~~~-----~~l~~L~~L~Ls~n~~~~----~~~~~l~~  260 (635)
                      +|++|+|++|.++.  +..-...+++|+.|+|++|.+.......+     ...++|++|+|++|.+..    .++..+..
T Consensus       102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~  181 (372)
T 3un9_A          102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG  181 (372)
T ss_dssp             CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence            45556666665543  11122345567777777776654332222     235667777777776543    24445566


Q ss_pred             CCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCCCCC
Q 006695          261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDCSML  331 (635)
Q Consensus       261 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n~~l  331 (635)
                      +++|++|+|++|.|+....     ..|...+...++|++|+|++|.++.     ++..+...++|++|+|++|.+.
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~-----~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGL-----ELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHH-----HHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             CCCcCEEeCCCCCCCcHHH-----HHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            7777777777777663210     1122233445677777777777653     3334455677777777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.82  E-value=9.9e-09  Score=106.61  Aligned_cols=105  Identities=19%  Similarity=0.151  Sum_probs=80.8

Q ss_pred             EEEeecccccccchhcccCCCCCcEEecCC-CCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCC
Q 006695          218 KLYINRCMRLKRLSTSICKLKSLHVLVLDD-CSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSS  296 (635)
Q Consensus       218 ~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~-n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~  296 (635)
                      .++.++++.+..+|. +..+++|+.|+|++ |.+.+..+..|..+++|+.|+|++|+|+.+|..         .+..+++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---------~~~~l~~   81 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---------AFHFTPR   81 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT---------GGGSCSC
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH---------HhcCCcC
Confidence            457777634456787 88899999999986 777776667889999999999999999887652         2355688


Q ss_pred             ccEEEcCCCCCCcccccccCCCCccEEeccCCCCCC
Q 006695          297 LRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLS  332 (635)
Q Consensus       297 L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~  332 (635)
                      |+.|+|++|+++.+|..+.....|+.|+|.+|++..
T Consensus        82 L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCEEeCCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence            999999999998888765433348888888876643

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.78  E-value=5.6e-10  Score=117.27  Aligned_cols=115  Identities=13%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             CCcceEEeccccccccC-----ccc-ccCCCccEEEeecccccc----cchhcccCCCCCcEEecCCCCCCCc----chh
Q 006695          191 GNITDLILSETAIQEVP-----SSI-ECLTNLEKLYINRCMRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPE  256 (635)
Q Consensus       191 ~~L~~L~L~~n~i~~lp-----~~~-~~l~~L~~L~L~~n~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~  256 (635)
                      .+|++|+|++|.|+...     ..+ ...++|++|+|++|.+..    .++..+..+++|++|+|++|.+...    +..
T Consensus       126 ~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~  205 (372)
T 3un9_A          126 LRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA  205 (372)
T ss_dssp             HTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH
T ss_pred             HhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH
Confidence            35666666666665322     122 245678888888887654    3445556788888899988886542    356


Q ss_pred             hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcc
Q 006695          257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL  310 (635)
Q Consensus       257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l  310 (635)
                      .+...++|+.|+|++|.|+....     ..+...+...++|++|+|++|.++..
T Consensus       206 ~L~~~~~L~~L~Ls~N~i~~~g~-----~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          206 QLDRNRQLQELNVAYNGAGDTAA-----LALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HGGGCSCCCEEECCSSCCCHHHH-----HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHhcCCCcCeEECCCCCCCHHHH-----HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            67778889999999998874321     11222334567899999999987654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.77  E-value=1.3e-06  Score=92.42  Aligned_cols=287  Identities=13%  Similarity=0.156  Sum_probs=143.6

Q ss_pred             ccccChhhhcCCC-CCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCC---CCCCCCC-C-CCCCceEEE
Q 006695           10 SIHLSPQAFANMP-NLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYP---SKALPFD-F-EPENLVKLN   83 (635)
Q Consensus        10 ~~~l~~~~f~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~---l~~lp~~-~-~l~~L~~L~   83 (635)
                      ++.|...||.+.+ .|+.+.+-.+ ++         .+......-..+|+.+.+..+.   ++.++.. | ...+|+.+.
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt---------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~  120 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VT---------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP  120 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CC---------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-ee---------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec
Confidence            4567777888774 5888777542 32         2333323222347777776553   5555554 4 466777666


Q ss_pred             cCCCCCcccc-ccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC
Q 006695           84 LPYSKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL  160 (635)
Q Consensus        84 L~~n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l  160 (635)
                      +..+ ++.+. ..+..+.+|+.+.+..+.  ..++  .+..+.+|+.+.+..+  ...+........+|+.+.+...  .
T Consensus       121 ~~~~-~~~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~--~  193 (394)
T 4gt6_A          121 ILDS-VTEIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK--V  193 (394)
T ss_dssp             GGTT-CSEECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT--C
T ss_pred             cCCc-cceehhhhhhhhccccccccccee--eeecccceecccccccccccce--eeEeccccccccceeEEEECCc--c
Confidence            6543 44454 335677777777776542  3333  3677777777777653  3333333223356777766432  1


Q ss_pred             CccCCCC--CCCCCcEEecCCCCCCCccCccc-----------------CCcceEEeccccccccC-cccccCCCccEEE
Q 006695          161 RSFPSNL--HFMSPIKIDFSSCFNLTEFPQIS-----------------GNITDLILSETAIQEVP-SSIECLTNLEKLY  220 (635)
Q Consensus       161 ~~lp~~~--~l~~L~~L~l~~c~~l~~~p~~~-----------------~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~  220 (635)
                      ..+....  .+.++......... ........                 ..+..+.+. +.++.+. ..|.++.+|+.+.
T Consensus       194 ~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~  271 (394)
T 4gt6_A          194 TRIGTNAFSECFALSTITSDSES-YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVK  271 (394)
T ss_dssp             CEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEE
T ss_pred             cccccchhhhccccceecccccc-cccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEe
Confidence            2221111  34444444332211 00000000                 011111111 1222232 2355666666666


Q ss_pred             eecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEE
Q 006695          221 INRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQL  300 (635)
Q Consensus       221 L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L  300 (635)
                      +..+. ...-...|.++++|+.+.+.. .....-...|.++.+|+.+.+..+ ++.+..         ..+.++.+|+.+
T Consensus       272 lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~---------~aF~~C~~L~~i  339 (394)
T 4gt6_A          272 MPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD---------DAFAGCEQLERI  339 (394)
T ss_dssp             CCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT---------TTTTTCTTCCEE
T ss_pred             ccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH---------hHhhCCCCCCEE
Confidence            65432 223334556666666666643 333333445666666666666532 444433         234455666666


Q ss_pred             EcCCCCCCcccc-cccCCCCccEEeccCC
Q 006695          301 NLSRNDSESLPA-SITQLSQLRSLHLKDC  328 (635)
Q Consensus       301 ~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n  328 (635)
                      .|..+ ++.|.. .+.++.+|+.+++.++
T Consensus       340 ~ip~s-v~~I~~~aF~~C~~L~~i~~~~~  367 (394)
T 4gt6_A          340 AIPSS-VTKIPESAFSNCTALNNIEYSGS  367 (394)
T ss_dssp             EECTT-CCBCCGGGGTTCTTCCEEEESSC
T ss_pred             EECcc-cCEEhHhHhhCCCCCCEEEECCc
Confidence            66433 555543 3566666666666653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.70  E-value=2.9e-06  Score=89.55  Aligned_cols=290  Identities=12%  Similarity=0.154  Sum_probs=170.8

Q ss_pred             cccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCC
Q 006695            9 TSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPY   86 (635)
Q Consensus         9 ~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~   86 (635)
                      .+..|...||.++++|+.+.+..|.-..+.      .+......-..+|+.+.+..+ ++.++.. | ...+|+.+.+..
T Consensus        74 svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~------~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~  146 (394)
T 4gt6_A           74 TVTEIGSNAFYNCTSLKRVTIQDNKPSCVK------KIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE  146 (394)
T ss_dssp             TCCEECTTTTTTCTTCCEEEEGGGCCCCCC------EECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT
T ss_pred             CeeEEhHHHhhCCccCceEeecCCCCCeee------EechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc
Confidence            367789999999999999999875311110      233333332234665555433 5555554 4 678999999975


Q ss_pred             CCCcccc-ccCCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCcc
Q 006695           87 SKVVQIW-EGKKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSF  163 (635)
Q Consensus        87 n~l~~l~-~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~l  163 (635)
                      + +..+. ..+..+.+|+.+.+..+  +..+.  .|.. .+|+.+.+... ....-...+..+.+|......... ...+
T Consensus       147 ~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~-~~~~  220 (394)
T 4gt6_A          147 G-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES-YPAI  220 (394)
T ss_dssp             T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS-SCBS
T ss_pred             e-eeeecccceecccccccccccce--eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccc-cccc
Confidence            4 44454 44678889999998775  33333  3543 67888888754 333334557777777777654422 1111


Q ss_pred             CCCC---------------CCCCCcEEecCCCCCCCccCc----ccCCcceEEeccccccccC-cccccCCCccEEEeec
Q 006695          164 PSNL---------------HFMSPIKIDFSSCFNLTEFPQ----ISGNITDLILSETAIQEVP-SSIECLTNLEKLYINR  223 (635)
Q Consensus       164 p~~~---------------~l~~L~~L~l~~c~~l~~~p~----~~~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~  223 (635)
                      ...+               ....+..+.+..  .++.+..    ...+|+.+.+..+. ..+. ..+.++++|+.+.+..
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~--~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~  297 (394)
T 4gt6_A          221 DNVLYEKSANGDYALIRYPSQREDPAFKIPN--GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS  297 (394)
T ss_dssp             SSCEEEECTTSCEEEEECCTTCCCSEEECCT--TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT
T ss_pred             cceeecccccccccccccccccccceEEcCC--cceEcccceeeecccccEEeccccc-ceecCcccccccccccccCCC
Confidence            1110               111122222110  1111110    11356667665443 3444 3478889999999864


Q ss_pred             ccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcC
Q 006695          224 CMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLS  303 (635)
Q Consensus       224 n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls  303 (635)
                       .+...-...|.++.+|+.++|..+ ....-..+|.++.+|+.+.+.. .++.+..         ..+.++++|+.+++.
T Consensus       298 -~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv~~I~~---------~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          298 -RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SVTKIPE---------SAFSNCTALNNIEYS  365 (394)
T ss_dssp             -TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TCCBCCG---------GGGTTCTTCCEEEES
T ss_pred             -cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-ccCEEhH---------hHhhCCCCCCEEEEC
Confidence             344444567888999999999763 4444456899999999999964 3677764         346777899999998


Q ss_pred             CCCCCcccccccCCCCccEEeccCC
Q 006695          304 RNDSESLPASITQLSQLRSLHLKDC  328 (635)
Q Consensus       304 ~n~~~~lp~~l~~l~~L~~L~L~~n  328 (635)
                      ++... + ..+....+|+.+.+..+
T Consensus       366 ~~~~~-~-~~~~~~~~L~~i~i~~~  388 (394)
T 4gt6_A          366 GSRSQ-W-NAISTDSGLQNLPVAPG  388 (394)
T ss_dssp             SCHHH-H-HTCBCCCCC--------
T ss_pred             Cceee-h-hhhhccCCCCEEEeCCC
Confidence            87532 1 24566777877777654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.61  E-value=6.6e-06  Score=86.27  Aligned_cols=122  Identities=10%  Similarity=0.153  Sum_probs=67.2

Q ss_pred             CcceEEeccccccccC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695          192 NITDLILSETAIQEVP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE  270 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~  270 (635)
                      +++.+.+..+ ++.+. ..+.++..|+.+.+..+ +...-...|.++.+|+.+.+.. .....-...|.++++|+.+.+.
T Consensus       218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEEC
T ss_pred             ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccccccccc
Confidence            3444444322 33333 23566667777776553 3333344566667777777654 2333333456667777777777


Q ss_pred             CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEecc
Q 006695          271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLK  326 (635)
Q Consensus       271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~  326 (635)
                      ++.++.++..         .+.++.+|+.+.|..+ ++.|.. .+.++.+|+.+.+.
T Consensus       295 ~~~i~~I~~~---------aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          295 NSAIETLEPR---------VFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CTTCCEECTT---------TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             ccccceehhh---------hhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence            6666666542         3445566777776543 555543 35666666665553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=1.4e-07  Score=98.39  Aligned_cols=16  Identities=19%  Similarity=0.405  Sum_probs=11.4

Q ss_pred             ccccCCCCCCEEeecC
Q 006695          141 SSVQNFNHLSMLCFEG  156 (635)
Q Consensus       141 ~~i~~l~~L~~L~L~~  156 (635)
                      .++..+++|+.|.+.+
T Consensus       133 ~s~~~l~~L~~L~l~~  148 (362)
T 2ra8_A          133 ENKEKFAHFEGLFWGD  148 (362)
T ss_dssp             TTHHHHTTCSEEEECC
T ss_pred             HhhhhcchhhheeecC
Confidence            3456678888888865

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.42  E-value=1.8e-07  Score=97.49  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=88.8

Q ss_pred             CCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCcccc--CCCCCCEEeecCCCCCCccCCCCCCCCCc
Q 006695           96 KKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQ--NFNHLSMLCFEGCKSLRSFPSNLHFMSPI  173 (635)
Q Consensus        96 ~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~--~l~~L~~L~L~~~~~l~~lp~~~~l~~L~  173 (635)
                      +..+++|+.|+|++|... .++.+. +++|++|+|..|.........+.  .+++|+.|+|+.+..... .. .....  
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~-~~~~~--  241 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FD-GDMNV--  241 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CC-SCGGG--
T ss_pred             HhcCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc-cc-hhHHH--
Confidence            456677888888776322 233343 67888888877654433222332  677788877753210000 00 00000  


Q ss_pred             EEecCCCCCCCc-cC-cccCCcceEEeccccccc-cCccc---ccCCCccEEEeeccccccc----chhcccCCCCCcEE
Q 006695          174 KIDFSSCFNLTE-FP-QISGNITDLILSETAIQE-VPSSI---ECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVL  243 (635)
Q Consensus       174 ~L~l~~c~~l~~-~p-~~~~~L~~L~L~~n~i~~-lp~~~---~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L  243 (635)
                               +.. +. ..+++|+.|.|.+|.+.. .+..+   ..+++|++|+|+.|.+...    ++..+..+++|+.|
T Consensus       242 ---------l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L  312 (362)
T 2ra8_A          242 ---------FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI  312 (362)
T ss_dssp             ---------TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred             ---------HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence                     000 00 124567777777776653 11111   3577888888888876553    33444567888888


Q ss_pred             ecCCCCCCCcchhhhcC-CCCCCEEEecCCC
Q 006695          244 VLDDCSKLERFPEILEK-MESVKCISLERTA  273 (635)
Q Consensus       244 ~Ls~n~~~~~~~~~l~~-l~~L~~L~L~~n~  273 (635)
                      +|++|.+....-..+.. +  ...++++++.
T Consensus       313 ~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          313 NMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             ECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             ECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            88888765443333332 2  3567887776

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.27  E-value=0.00015  Score=75.73  Aligned_cols=126  Identities=16%  Similarity=0.187  Sum_probs=87.4

Q ss_pred             cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccc
Q 006695          208 SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGL  287 (635)
Q Consensus       208 ~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L  287 (635)
                      ..+..+.+|+.+.+..+ ........+.++..|+.+.+..+ ....-...|.++.+|+.+.+.. .++.++..       
T Consensus       211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~-------  280 (379)
T 4h09_A          211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYL-------  280 (379)
T ss_dssp             TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTT-------
T ss_pred             cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccc-------
Confidence            34667778888887653 33344456778889999998764 4444456788889999998864 35555542       


Q ss_pred             hhhccCCCCccEEEcCCCCCCcccc-cccCCCCccEEeccCCCCCCcCCCC----CCccceeccc
Q 006695          288 KDLYIGGSSLRQLNLSRNDSESLPA-SITQLSQLRSLHLKDCSMLSSLPEL----PQSLELLDAE  347 (635)
Q Consensus       288 ~~l~~~~~~L~~L~Ls~n~~~~lp~-~l~~l~~L~~L~L~~n~~l~~lp~l----~~sL~~L~l~  347 (635)
                        .+..+++|+.+.+.++.++.|+. .+.++.+|+.+.|..+  ++.|...    -.+|+.+.+.
T Consensus       281 --aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          281 --LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             --TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCC
T ss_pred             --ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEEC
Confidence              35667899999999998988875 4789999999998642  4455431    1455555553

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.16  E-value=1.1e-06  Score=82.35  Aligned_cols=66  Identities=12%  Similarity=0.138  Sum_probs=31.4

Q ss_pred             cccCCCccEEEeecc-cccc----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCcc
Q 006695          210 IECLTNLEKLYINRC-MRLK----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       210 ~~~l~~L~~L~L~~n-~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      +...+.|++|+|++| .+..    .+...+...++|++|+|++|.+...    +...+...++|++|+|++|.|+
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence            344555566666555 4322    1233344455555555555554321    2233344455555555555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.02  E-value=1.4e-06  Score=86.25  Aligned_cols=69  Identities=20%  Similarity=0.347  Sum_probs=38.1

Q ss_pred             cCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCC--CccEEeccCCCCCCcCC
Q 006695          259 EKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLS--QLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       259 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~--~L~~L~L~~n~~l~~lp  335 (635)
                      .++++|+.|+|++|+|+.++.       ++..+..+++|+.|+|++|.+..+. .+..+.  +|++|+|++|++.+.+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~-------l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDD-------MSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGG-------GTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCcc-------chhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccC
Confidence            345666666666666665432       1122234566666666666666552 233333  66777777766665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.02  E-value=1.9e-06  Score=80.83  Aligned_cols=113  Identities=11%  Similarity=0.100  Sum_probs=73.4

Q ss_pred             CCcceEEeccc-cccc-----cCcccccCCCccEEEeeccccccc----chhcccCCCCCcEEecCCCCCCCc----chh
Q 006695          191 GNITDLILSET-AIQE-----VPSSIECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSKLER----FPE  256 (635)
Q Consensus       191 ~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~~~~----~~~  256 (635)
                      ++|++|+|++| .|..     +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...    +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            45677777776 6652     444566678888899988887542    344555678899999999887653    455


Q ss_pred             hhcCCCCCCEEEe--cCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          257 ILEKMESVKCISL--ERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       257 ~l~~l~~L~~L~L--~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                      .+...++|++|+|  ++|.|+.--     ...+...+...++|++|+|++|.++
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g-----~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNV-----EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHH-----HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHhCCCceEEEecCCCCCCCHHH-----HHHHHHHHHhCCCcCEEeccCCCCC
Confidence            6677778888888  778776311     0111223334567777777777653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=6.2e-06  Score=81.62  Aligned_cols=82  Identities=17%  Similarity=0.201  Sum_probs=57.0

Q ss_pred             cCCCCCcEEecCCCCCCC--cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC-ccc
Q 006695          235 CKLKSLHVLVLDDCSKLE--RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE-SLP  311 (635)
Q Consensus       235 ~~l~~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~-~lp  311 (635)
                      .++++|+.|+|++|.+.+  .++..+..+++|+.|+|++|.|+.+. .+..+       ..+ +|++|+|++|.+. .+|
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l-------~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKI-------KGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGG-------TTS-CCSEEECTTSTTGGGCS
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhc-------ccC-CcceEEccCCcCccccC
Confidence            457788888888887766  45567778888888888888888762 23222       123 7888999998875 344


Q ss_pred             c-------cccCCCCccEEec
Q 006695          312 A-------SITQLSQLRSLHL  325 (635)
Q Consensus       312 ~-------~l~~l~~L~~L~L  325 (635)
                      .       .+..+++|+.||=
T Consensus       238 ~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          238 DQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             SHHHHHHHHHHHCTTCCEESS
T ss_pred             cchhHHHHHHHHCcccCeECC
Confidence            2       2567788887763

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.73  E-value=1.6e-05  Score=73.24  Aligned_cols=93  Identities=14%  Similarity=0.219  Sum_probs=55.3

Q ss_pred             CCCCCC-CCCCceEEEcCCCCCccc-cccCCCCCCCcEEEccCCCCCCCCC--CCCCC----CCCCEEeecCCCCCcc-c
Q 006695           69 ALPFDF-EPENLVKLNLPYSKVVQI-WEGKKRAFKLKYVDIHNSQYLIRMP--DLSET----PNLERTNLKNCINLTC-V  139 (635)
Q Consensus        69 ~lp~~~-~l~~L~~L~L~~n~l~~l-~~~~~~l~~L~~L~Ls~n~~~~~~p--~l~~l----~~L~~L~L~~n~~l~~-~  139 (635)
                      .+|..+ .-.+|++||++++.|+.. -..+..+++|+.|+|++|..+++..  .++.+    ++|++|+|++|..++. -
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred             cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence            445543 445788888888887632 1345677788888888776443211  23333    3677777777754432 1


Q ss_pred             CccccCCCCCCEEeecCCCCCC
Q 006695          140 PSSVQNFNHLSMLCFEGCKSLR  161 (635)
Q Consensus       140 ~~~i~~l~~L~~L~L~~~~~l~  161 (635)
                      -..+..+++|+.|++++|..++
T Consensus       132 l~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          132 IIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HHHGGGCTTCCEEEEESCTTCC
T ss_pred             HHHHhcCCCCCEEECCCCCCCC
Confidence            2235566677777777665544

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.67  E-value=3.7e-05  Score=70.75  Aligned_cols=35  Identities=9%  Similarity=0.098  Sum_probs=17.1

Q ss_pred             CccEEEeecccccccchhcccCCCCCcEEecCCCC
Q 006695          215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCS  249 (635)
Q Consensus       215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~  249 (635)
                      +|+.||+++|.+...--..+.++++|++|+|++|.
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~   96 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH   96 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence            45555555555433323334445555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.40  E-value=0.0029  Score=59.13  Aligned_cols=68  Identities=25%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             hhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCc-----ccccccCCCCccEEeccCC
Q 006695          256 EILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSES-----LPASITQLSQLRSLHLKDC  328 (635)
Q Consensus       256 ~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~-----lp~~l~~l~~L~~L~L~~n  328 (635)
                      +.+..-+.|+.|+|++|.|.+--     ...|...+...+.|++|+|++|.++.     |-..+..-+.|++|+|++|
T Consensus        64 ~aL~~N~~L~~L~L~~n~igd~g-----a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           64 EAACNSKHIEKFSLANTAISDSE-----ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTCSCCCEEECTTSCCBHHH-----HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHhhCCCcCEEEccCCCCChHH-----HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            34444455555555555554210     01122222334556666666666542     2233444455666666643

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.30  E-value=0.0062  Score=52.99  Aligned_cols=54  Identities=28%  Similarity=0.465  Sum_probs=41.8

Q ss_pred             CEEEecCCCcc--ccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCC
Q 006695          265 KCISLERTAIT--ELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       265 ~~L~L~~n~l~--~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~  330 (635)
                      ..++.+++.++  .+|..+            -++|+.|+|++|+++.||.. +..+++|+.|+|++|+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l------------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF------------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC------------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCC------------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            36777788887  787643            24688999999999888865 57888889888888765

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.08  E-value=0.0049  Score=57.56  Aligned_cols=113  Identities=18%  Similarity=0.193  Sum_probs=69.3

Q ss_pred             ccCCCccEEEeecc-cccc----cchhcccCCCCCcEEecCCCCCCC----cchhhhcCCCCCCEEEecCCCccccCchh
Q 006695          211 ECLTNLEKLYINRC-MRLK----RLSTSICKLKSLHVLVLDDCSKLE----RFPEILEKMESVKCISLERTAITELPSSF  281 (635)
Q Consensus       211 ~~l~~L~~L~L~~n-~~~~----~lp~~~~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~lp~~~  281 (635)
                      .+-+.|+.|+|++| .+..    .+...+..-+.|+.|+|++|.+..    .+.+.+..-+.|+.|+|++|.|+.--   
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G---  114 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL---  114 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH---
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH---
Confidence            34466777777764 3322    234555667778888888877653    34455666778888888888877311   


Q ss_pred             cccccchhhccCCCCccEEEcCCC---CCC-----cccccccCCCCccEEeccCC
Q 006695          282 ANLEGLKDLYIGGSSLRQLNLSRN---DSE-----SLPASITQLSQLRSLHLKDC  328 (635)
Q Consensus       282 ~~l~~L~~l~~~~~~L~~L~Ls~n---~~~-----~lp~~l~~l~~L~~L~L~~n  328 (635)
                        ...|-..+...+.|++|+|++|   .++     .|-..+..-+.|+.|+++.|
T Consensus       115 --a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          115 --LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             --HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             --HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence              1112233344567888888765   333     23334556678888888764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.23  E-value=0.03  Score=48.55  Aligned_cols=53  Identities=15%  Similarity=0.206  Sum_probs=31.1

Q ss_pred             EeecCCCCCC--CCCCCCCCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCC
Q 006695           59 YLHWHEYPSK--ALPFDFEPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQY  112 (635)
Q Consensus        59 ~L~l~~~~l~--~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~  112 (635)
                      .++.+++.++  .+|..+ +.+|++|+|++|+|+.++.+ +..+++|+.|+|++|..
T Consensus        12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC-CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555555  666443 23566667777766666544 35566666666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	635
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	0.002

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.2 bits (118), Expect = 3e-07
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 295 SSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQF 354
            SL +LN+S N    LPA      +L  L       L+ +PELPQ+L+ L  E    L+ 
Sbjct: 284 PSLEELNVSNNKLIELPALP---PRLERLIASFNH-LAEVPELPQNLKQLHVEYN-PLRE 338

Query: 355 IPEILSGLEE 364
            P+I   +E+
Sbjct: 339 FPDIPESVED 348

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 17/88 (19%)

Query: 261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQL 320
             S++ +++    + ELP+    LE             +L  S N    +P        L
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLE-------------RLIASFNHLAEVPEL---PQNL 326

Query: 321 RSLHLKDCSMLSSLPELPQSLELLDAEN 348
           + LH++    L   P++P+S+E L   +
Sbjct: 327 KQLHVEYNP-LREFPDIPESVEDLRMNS 353

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.0 bits (110), Expect = 4e-06
 Identities = 56/283 (19%), Positives = 106/283 (37%), Gaps = 16/283 (5%)

Query: 53  LPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAF----KLKYVDIH 108
           LP +   L         +  D + +NL  L+       +I +    AF    KL+ + + 
Sbjct: 29  LPPDTALLDLQNNKITEIK-DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 109 NSQYLIRMPDLSETPNLERTNLKNCIN-LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL 167
            +Q L  +P+       E    +N I  +     +  N   +  L     KS        
Sbjct: 88  KNQ-LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 146

Query: 168 HFMSPIKIDFSSCFNLTEFPQ-ISGNITDLILSETAIQEV-PSSIECLTNLEKLYINRCM 225
             M  +     +  N+T  PQ +  ++T+L L    I +V  +S++ L NL KL ++   
Sbjct: 147 QGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 226 RLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLE 285
                + S+     L  L L++  KL + P  L   + ++ + L    I+ + S+     
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 286 GLKDLYIGGSSLRQLNLSRN---DSESLPASITQLSQLRSLHL 325
           G        +S   ++L  N     E  P++   +    ++ L
Sbjct: 266 GYNTKK---ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 44/289 (15%), Positives = 102/289 (35%), Gaps = 25/289 (8%)

Query: 76  PENLVKLNLPYSKVVQIWEGK-KRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNC 133
           P +   L+L  +K+ +I +G  K    L  + + N++     P   +    LER  L   
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89

Query: 134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNI 193
                     +    L +   E  K  +S  + L+ M  +++  +   +          +
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 194 TDLI---LSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK 250
             L    +++T I  +P  +    +L +L+++     K  + S+  L +L  L L   S 
Sbjct: 150 KKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207

Query: 251 LERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL 310
                  L     ++ + L    + ++P   A+ +           ++ + L  N+  ++
Sbjct: 208 SAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK----------YIQVVYLHNNNISAI 257

Query: 311 PAS-------ITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQL 352
            ++        T+ +    + L   + +      P +   +      QL
Sbjct: 258 GSNDFCPPGYNTKKASYSGVSL-FSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 38/256 (14%), Positives = 75/256 (29%), Gaps = 21/256 (8%)

Query: 2   FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLH 61
            L L       +SP AFA +  L  L     +   +P  + K    Q L    NE+  + 
Sbjct: 59  TLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL--QELRVHENEITKVR 116

Query: 62  WHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSE 121
                        +   +     P           +   KL Y+ I ++        L  
Sbjct: 117 KS-----VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP- 170

Query: 122 TPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCF 181
            P+L   +L          +S++  N+L+ L             +L     ++    +  
Sbjct: 171 -PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 229

Query: 182 NLTEFPQISGN---ITDLILSETAIQEVPSSIEC-------LTNLEKLYI--NRCMRLKR 229
            L + P    +   I  + L    I  + S+  C         +   + +  N     + 
Sbjct: 230 KLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289

Query: 230 LSTSICKLKSLHVLVL 245
             ++   +     + L
Sbjct: 290 QPSTFRCVYVRAAVQL 305

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 1e-05
 Identities = 44/349 (12%), Positives = 101/349 (28%), Gaps = 33/349 (9%)

Query: 4   DLSKITSIHL------SPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNEL 57
           DL ++T++        S      + NL  + F   +   +  + +   L   L       
Sbjct: 42  DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA 101

Query: 58  RYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP 117
                    +      F  +      L     +   E               +       
Sbjct: 102 DITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 161

Query: 118 DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF-----EGCKSLRSFPSNLHFMSP 172
               T      NL     L    + V + + L+ L            +          + 
Sbjct: 162 GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 221

Query: 173 IKIDFSSCFNLTEFPQISG--NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRL 230
            ++  +    L +   ++   N+TDL L+   I  +   +  LT L +L +        +
Sbjct: 222 DELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQ----I 275

Query: 231 STSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDL 290
           S          +  L+           +  ++++  ++L    I+++    ++L  L+ L
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRL 334

Query: 291 YIGG------------SSLRQLNLSRNDSESLPASITQLSQLRSLHLKD 327
           +               +++  L+   N    L   +  L+++  L L D
Sbjct: 335 FFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLND 382

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 40/285 (14%), Positives = 86/285 (30%), Gaps = 48/285 (16%)

Query: 76  PENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPD--LSETPNLERTNLKNC 133
            + ++    P S + Q        F+++++D+ NS   +      LS+   L+  +L+  
Sbjct: 22  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNI 193
                + +++   ++L  L   GC     F       S  ++D  +     +F       
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF------- 134

Query: 194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLER 253
                  T      +       + +L ++   +  + S     ++    LV  D S    
Sbjct: 135 -------TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM 187

Query: 254 FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND--SESLP 311
                 +                                    L+ L+LSR         
Sbjct: 188 LKNDCFQEFFQLNY-----------------------------LQHLSLSRCYDIIPETL 218

Query: 312 ASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAENCKQLQFIP 356
             + ++  L++L +       +L  L ++L  L   NC     I 
Sbjct: 219 LELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQI-NCSHFTTIA 262

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	635
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.87
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.84
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.63
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.59
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.58
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.57
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.56
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.54
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.44
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.4
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.33
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.29
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.05
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.02
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.98
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.93
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.99
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.79
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.05

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=6.4e-23  Score=214.66  Aligned_cols=321  Identities=16%  Similarity=0.182  Sum_probs=209.1

Q ss_pred             cCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCC
Q 006695           19 ANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKR   98 (635)
Q Consensus        19 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~   98 (635)
                      +.+.+|+.|+++++.++         .+ +++..+++ |++|++++|.++.+|..-.+++|++|++++|.++.++ .+..
T Consensus        41 ~~l~~l~~L~l~~~~I~---------~l-~gl~~L~n-L~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~-~l~~  108 (384)
T d2omza2          41 TDLDQVTTLQADRLGIK---------SI-DGVEYLNN-LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT-PLAN  108 (384)
T ss_dssp             HHHTTCCEEECCSSCCC---------CC-TTGGGCTT-CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTT
T ss_pred             HHhCCCCEEECCCCCCC---------Cc-cccccCCC-CCEEeCcCCcCCCCccccCCccccccccccccccccc-cccc
Confidence            34567888888887766         22 45666655 8888888888888876346788888888888887765 3677


Q ss_pred             CCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCccc-------------------CccccCCCCCCEEeecCCCC
Q 006695           99 AFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCV-------------------PSSVQNFNHLSMLCFEGCKS  159 (635)
Q Consensus        99 l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~-------------------~~~i~~l~~L~~L~L~~~~~  159 (635)
                      +++|+.|+++++.... ++.......+..+....+......                   ...+...+.........+. 
T Consensus       109 l~~L~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  186 (384)
T d2omza2         109 LTNLTGLTLFNNQITD-IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-  186 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-
T ss_pred             cccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc-
Confidence            8888888887776433 333344455555554443211110                   0112222233333332221 


Q ss_pred             CCccCCCCCCCCCcEEecCCCCCCCccC-cccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCC
Q 006695          160 LRSFPSNLHFMSPIKIDFSSCFNLTEFP-QISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLK  238 (635)
Q Consensus       160 l~~lp~~~~l~~L~~L~l~~c~~l~~~p-~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~  238 (635)
                      .........+++++.++++++..-...| ....+|++|++++|.++.++ .+..+++|+.|++++|.+.+..+  +..++
T Consensus       187 ~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~~~  263 (384)
T d2omza2         187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSGLT  263 (384)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTTCT
T ss_pred             cccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCCCCc--ccccc
Confidence            1111222256777788877754332222 22367888888888888765 56778888888888887665433  66788


Q ss_pred             CCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCC
Q 006695          239 SLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLS  318 (635)
Q Consensus       239 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~  318 (635)
                      +|++|+++++.+.+..  .+..++.++.+.+.+|.++.++.           +..+++++.|++++|+++.++ .+..++
T Consensus       264 ~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~~~-----------~~~~~~l~~L~ls~n~l~~l~-~l~~l~  329 (384)
T d2omza2         264 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP-----------ISNLKNLTYLTLYFNNISDIS-PVSSLT  329 (384)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG-----------GGGCTTCSEEECCSSCCSCCG-GGGGCT
T ss_pred             cCCEeeccCcccCCCC--ccccccccccccccccccccccc-----------cchhcccCeEECCCCCCCCCc-ccccCC
Confidence            8888888887765533  36677888888888888776543           244578888999998888876 378888


Q ss_pred             CccEEeccCCCCCCcCCC--CCCccceecccccccccccCccccCccccchhhhhhh
Q 006695          319 QLRSLHLKDCSMLSSLPE--LPQSLELLDAENCKQLQFIPEILSGLEEVDASVLEKA  373 (635)
Q Consensus       319 ~L~~L~L~~n~~l~~lp~--l~~sL~~L~l~~c~~l~~~~~~~~~L~~L~~l~L~~n  373 (635)
                      +|++|++++|++ +.++.  .+++|++|++++|+... ++ .+.++++|+.|+|++|
T Consensus       330 ~L~~L~L~~n~l-~~l~~l~~l~~L~~L~l~~N~l~~-l~-~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         330 KLQRLFFANNKV-SDVSSLANLTNINWLSAGHNQISD-LT-PLANLTRITQLGLNDQ  383 (384)
T ss_dssp             TCCEEECCSSCC-CCCGGGGGCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEECCCE
T ss_pred             CCCEEECCCCCC-CCChhHcCCCCCCEEECCCCcCCC-Ch-hhccCCCCCEeeCCCC
Confidence            899999988864 34543  24788899998886543 33 2778888888887766

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.90  E-value=1.9e-22  Score=211.05  Aligned_cols=313  Identities=15%  Similarity=0.159  Sum_probs=236.5

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      .|+++++.+..+  +.++.+++|++|++++|++++++          .+..+++ |++|++++|++..++....+++|+.
T Consensus        48 ~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l~----------~l~~L~~-L~~L~L~~n~i~~i~~l~~l~~L~~  114 (384)
T d2omza2          48 TLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT----------PLKNLTK-LVDILMNNNQIADITPLANLTNLTG  114 (384)
T ss_dssp             EEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCG----------GGTTCTT-CCEEECCSSCCCCCGGGTTCTTCCE
T ss_pred             EEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCCc----------cccCCcc-ccccccccccccccccccccccccc
Confidence            589999998887  45889999999999999998432          2666665 9999999999999887668999999


Q ss_pred             EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCC--------------------CCCCCCCCCCEEeecCCCCCcccCc
Q 006695           82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRM--------------------PDLSETPNLERTNLKNCINLTCVPS  141 (635)
Q Consensus        82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~--------------------p~l~~l~~L~~L~L~~n~~l~~~~~  141 (635)
                      |+++++.++.++.. .....+..+....+.+....                    ..+...+.........+.  .....
T Consensus       115 L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  191 (384)
T d2omza2         115 LTLFNNQITDIDPL-KNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK--VSDIS  191 (384)
T ss_dssp             EECCSSCCCCCGGG-TTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC--CCCCG
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc--ccccc
Confidence            99999999877543 34455566655554422111                    112233333444443332  23345


Q ss_pred             cccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCc--ccCCcceEEeccccccccCcccccCCCccEE
Q 006695          142 SVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQ--ISGNITDLILSETAIQEVPSSIECLTNLEKL  219 (635)
Q Consensus       142 ~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~--~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L  219 (635)
                      ....+++++.+++++|.. ..++.....++|+.|++++| .++.++.  .+++|+.|++++|.++.++. ++.+++|++|
T Consensus       192 ~~~~l~~~~~l~l~~n~i-~~~~~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L  268 (384)
T d2omza2         192 VLAKLTNLESLIATNNQI-SDITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL  268 (384)
T ss_dssp             GGGGCTTCSEEECCSSCC-CCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             ccccccccceeeccCCcc-CCCCcccccCCCCEEECCCC-CCCCcchhhcccccchhccccCccCCCCc-ccccccCCEe
Confidence            677889999999988753 44444456788999999987 4555543  34789999999999998864 7889999999


Q ss_pred             EeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccE
Q 006695          220 YINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQ  299 (635)
Q Consensus       220 ~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~  299 (635)
                      ++++|.+.+..  .+..++.++.+++++|.+.+  ...+..+++++.|++++|++++++. +          ..+++|++
T Consensus       269 ~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~~-l----------~~l~~L~~  333 (384)
T d2omza2         269 KLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDISP-V----------SSLTKLQR  333 (384)
T ss_dssp             ECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCGG-G----------GGCTTCCE
T ss_pred             eccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCcc-c----------ccCCCCCE
Confidence            99998876543  36788999999999988765  2357889999999999999998753 3          44689999


Q ss_pred             EEcCCCCCCcccccccCCCCccEEeccCCCCCCcCC-CCCCccceeccccc
Q 006695          300 LNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLP-ELPQSLELLDAENC  349 (635)
Q Consensus       300 L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp-~l~~sL~~L~l~~c  349 (635)
                      |++++|+++.++ .++++++|++|++++|++.+..| ..+++|+.|++++|
T Consensus       334 L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         334 LFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             EECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCCE
T ss_pred             EECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChhhccCCCCCEeeCCCC
Confidence            999999999887 68999999999999987665433 23579999999987

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=2.9e-22  Score=203.45  Aligned_cols=260  Identities=16%  Similarity=0.165  Sum_probs=152.4

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEEeecCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERTNLKNC  133 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L~L~~n  133 (635)
                      ..+.+++++..++++|..+ ++++++|+|++|+|+++++ .+.++++|++|++++|.+....|+ |.++++|+.|++++|
T Consensus        11 ~~~~~~C~~~~L~~lP~~l-~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n   89 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN   89 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             cCCEEEecCCCCCccCCCC-CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCC
Confidence            4778888888899999876 3689999999999999986 578889999999999987766664 888899999999888


Q ss_pred             CCCcccCccccCCCCCCEEeecCCCCCCccCCCC--CCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccc
Q 006695          134 INLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL--HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIE  211 (635)
Q Consensus       134 ~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~  211 (635)
                      . +..+|..+  ...++.|.+.+|.. ..++...  ....+..++...+......                  ..+..+.
T Consensus        90 ~-l~~l~~~~--~~~l~~L~~~~n~l-~~l~~~~~~~~~~~~~l~~~~n~~~~~~------------------~~~~~~~  147 (305)
T d1xkua_          90 Q-LKELPEKM--PKTLQELRVHENEI-TKVRKSVFNGLNQMIVVELGTNPLKSSG------------------IENGAFQ  147 (305)
T ss_dssp             C-CSBCCSSC--CTTCCEEECCSSCC-CBBCHHHHTTCTTCCEEECCSSCCCGGG------------------BCTTGGG
T ss_pred             c-cCcCccch--hhhhhhhhccccch-hhhhhhhhhccccccccccccccccccC------------------CCccccc
Confidence            4 44555433  45778888777543 2332211  3333444444433211110                  1122344


Q ss_pred             cCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhc
Q 006695          212 CLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY  291 (635)
Q Consensus       212 ~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~  291 (635)
                      .+++|+.+++++|.+.. +|..  .+++|+.|++++|......+..+..++.++.|++++|.++.++..         .+
T Consensus       148 ~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~---------~~  215 (305)
T d1xkua_         148 GMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG---------SL  215 (305)
T ss_dssp             GCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTT---------TG
T ss_pred             cccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccc---------cc
Confidence            44555555555554332 2221  234555555555555555555555555555555555555554321         12


Q ss_pred             cCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcCCC----------CCCccceeccccccc
Q 006695          292 IGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPE----------LPQSLELLDAENCKQ  351 (635)
Q Consensus       292 ~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~----------l~~sL~~L~l~~c~~  351 (635)
                      .++++|++|+|++|.++++|.++..+++|++|+|++|++ +.++.          .+.+|+.|++++|+.
T Consensus       216 ~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i-~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         216 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI-SAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC-CCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccceeeecccccccccccccccccCCCEEECCCCcc-CccChhhccCcchhcccCCCCEEECCCCcC
Confidence            233555555555555555555555555555555555442 23321          134566666666653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=1.2e-23  Score=214.73  Aligned_cols=244  Identities=16%  Similarity=0.195  Sum_probs=170.0

Q ss_pred             CCceEEEcCCCCCc---cccccCCCCCCCcEEEccC-CCCCCCCC-CCCCCCCCCEEeecCCCCCcccCccccCCCCCCE
Q 006695           77 ENLVKLNLPYSKVV---QIWEGKKRAFKLKYVDIHN-SQYLIRMP-DLSETPNLERTNLKNCINLTCVPSSVQNFNHLSM  151 (635)
Q Consensus        77 ~~L~~L~L~~n~l~---~l~~~~~~l~~L~~L~Ls~-n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~  151 (635)
                      .+++.|+|+++.+.   .+|..+.++++|++|+|++ |.+.+.+| .++++++|++|+|++|...+..+..+..+.+|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            36788888888776   4778888888888888876 66666676 4888888888888888777777777788888888


Q ss_pred             EeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEecccccc-ccCcccccCCCc-cEEEeecccccc
Q 006695          152 LCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ-EVPSSIECLTNL-EKLYINRCMRLK  228 (635)
Q Consensus       152 L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~-~lp~~~~~l~~L-~~L~L~~n~~~~  228 (635)
                      +++++|.....+|..+ .++                     +++.+++++|.++ .+|..+..+.++ +.+++++|++.+
T Consensus       130 l~l~~N~~~~~~p~~l~~l~---------------------~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~  188 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLP---------------------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCT---------------------TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             cccccccccccCchhhccCc---------------------ccceeeccccccccccccccccccccccccccccccccc
Confidence            8888776655555433 333                     3445555555554 456666666654 667777777777


Q ss_pred             cchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          229 RLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       229 ~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                      ..|..+..+..+ .++++++...+.+|..+..+++|+.+++++|.++..+..+          ..+++|+.|+|++|+++
T Consensus       189 ~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~----------~~~~~L~~L~Ls~N~l~  257 (313)
T d1ogqa_         189 KIPPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----------GLSKNLNGLDLRNNRIY  257 (313)
T ss_dssp             ECCGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGC----------CCCTTCCEEECCSSCCE
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccccccccccc----------ccccccccccCccCeec
Confidence            777666665544 5777777777777777777777777777777776544333          33467778888888775


Q ss_pred             -cccccccCCCCccEEeccCCCCCCcCCCC--CCccceecccccccc
Q 006695          309 -SLPASITQLSQLRSLHLKDCSMLSSLPEL--PQSLELLDAENCKQL  352 (635)
Q Consensus       309 -~lp~~l~~l~~L~~L~L~~n~~l~~lp~l--~~sL~~L~l~~c~~l  352 (635)
                       .+|.+++++++|++|+|++|++.+.+|+.  +++|+.+++++|+.+
T Consensus       258 g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEE
T ss_pred             ccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccc
Confidence             67777888888888888887777777763  356666666666544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.87  E-value=6.7e-23  Score=209.05  Aligned_cols=247  Identities=18%  Similarity=0.200  Sum_probs=197.8

Q ss_pred             cceEeecCCCCCC---CCCCCC-CCCCceEEEcCC-CCCc-cccccCCCCCCCcEEEccCCCCCCCCCC-CCCCCCCCEE
Q 006695           56 ELRYLHWHEYPSK---ALPFDF-EPENLVKLNLPY-SKVV-QIWEGKKRAFKLKYVDIHNSQYLIRMPD-LSETPNLERT  128 (635)
Q Consensus        56 ~L~~L~l~~~~l~---~lp~~~-~l~~L~~L~L~~-n~l~-~l~~~~~~l~~L~~L~Ls~n~~~~~~p~-l~~l~~L~~L  128 (635)
                      +++.|++.++.+.   .+|..+ .+++|++|+|++ |++. .+|..+.++++|++|+|++|++....+. +..+++|+.+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            4888888888775   477776 789999999986 7777 7899999999999999999998776664 7888999999


Q ss_pred             eecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCC-CCCCCcEEecCCCCCCCccCcccCCcceEEecccccccc-
Q 006695          129 NLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNL-HFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEV-  206 (635)
Q Consensus       129 ~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~l-  206 (635)
                      ++++|.....+|..++.+++|+.+++++|.....+|..+ .+..                    .++.+++++|+++.. 
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~--------------------l~~~l~~~~n~l~~~~  190 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK--------------------LFTSMTISRNRLTGKI  190 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT--------------------TCCEEECCSSEEEEEC
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccccccc--------------------cccccccccccccccc
Confidence            999998888899999999999999999987666666533 2222                    235666777777754 


Q ss_pred             CcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCcc-ccCchhcccc
Q 006695          207 PSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAIT-ELPSSFANLE  285 (635)
Q Consensus       207 p~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~  285 (635)
                      |..+..+.. ..+++..+...+.+|..+..+++|+.+++++|.+.+.++ .++.+++|+.|++++|+++ .+|..++   
T Consensus       191 ~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~---  265 (313)
T d1ogqa_         191 PPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLT---  265 (313)
T ss_dssp             CGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGG---
T ss_pred             ccccccccc-ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHh---
Confidence            444555544 468888888888888888899999999999988776654 5788899999999999998 7887764   


Q ss_pred             cchhhccCCCCccEEEcCCCCCC-cccccccCCCCccEEeccCCCCCCcCC
Q 006695          286 GLKDLYIGGSSLRQLNLSRNDSE-SLPASITQLSQLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       286 ~L~~l~~~~~~L~~L~Ls~n~~~-~lp~~l~~l~~L~~L~L~~n~~l~~lp  335 (635)
                             .+++|++|+|++|+++ .+| .++++++|+.+++++|+.+...|
T Consensus       266 -------~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         266 -------QLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             -------GCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEESTT
T ss_pred             -------CCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCccccCCC
Confidence                   4578999999999986 777 46788999999999998765543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=2.3e-20  Score=189.14  Aligned_cols=263  Identities=16%  Similarity=0.146  Sum_probs=180.2

Q ss_pred             CcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCccc-cccCCCCC
Q 006695           24 LRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQI-WEGKKRAF  100 (635)
Q Consensus        24 L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l-~~~~~~l~  100 (635)
                      ++.++=++..++         .+|.++   |..+++|++++|.++.+|+. | ++++|++|++++|.+..+ |..+.+++
T Consensus        12 ~~~~~C~~~~L~---------~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~   79 (305)
T d1xkua_          12 LRVVQCSDLGLE---------KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLV   79 (305)
T ss_dssp             TTEEECTTSCCC---------SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCT
T ss_pred             CCEEEecCCCCC---------ccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCC
Confidence            455555555555         344443   34699999999999999874 6 788999999999999887 45688899


Q ss_pred             CCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCC
Q 006695          101 KLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSC  180 (635)
Q Consensus       101 ~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c  180 (635)
                      +|++|++++|++. .+|. ...+.++.|.+.+|......+..+.....+..++...+.........              
T Consensus        80 ~L~~L~l~~n~l~-~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~--------------  143 (305)
T d1xkua_          80 KLERLYLSKNQLK-ELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN--------------  143 (305)
T ss_dssp             TCCEEECCSSCCS-BCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT--------------
T ss_pred             ccCEecccCCccC-cCcc-chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCc--------------
Confidence            9999999999854 4553 23468889999888665554555677778888888776433221110              


Q ss_pred             CCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcC
Q 006695          181 FNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEK  260 (635)
Q Consensus       181 ~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~  260 (635)
                          .......+|+.+++++|.+..+|..+  +++|+.|++++|......+..+.+++.++.|++++|.+.+..+..+..
T Consensus       144 ----~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~  217 (305)
T d1xkua_         144 ----GAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  217 (305)
T ss_dssp             ----TGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             ----cccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc
Confidence                00111234555555666666665443  467777777777777777777777777777777777776666677777


Q ss_pred             CCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-------ccCCCCccEEeccCCCC
Q 006695          261 MESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-------ITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       261 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-------l~~l~~L~~L~L~~n~~  330 (635)
                      +++|++|+|++|+|+.+|..+          ..+++|+.|+|++|+++.|+..       ...+.+|+.|+|++|+.
T Consensus       218 l~~L~~L~L~~N~L~~lp~~l----------~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         218 TPHLRELHLNNNKLVKVPGGL----------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             STTCCEEECCSSCCSSCCTTT----------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccceeeeccccccccccccc----------ccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            777777777777777777654          3346777777877777776542       24567788888888775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.85  E-value=4.3e-19  Score=182.55  Aligned_cols=305  Identities=21%  Similarity=0.258  Sum_probs=202.2

Q ss_pred             CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCC
Q 006695           22 PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFK  101 (635)
Q Consensus        22 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~  101 (635)
                      .+|+.|+++++.++.         +|+.    +.+|++|++++|.++++|..  +.+|+.|++++|+++.+++-   .+.
T Consensus        38 ~~l~~LdLs~~~L~~---------lp~~----~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGLSS---------LPEL----PPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDL---PPL   99 (353)
T ss_dssp             HTCSEEECTTSCCSC---------CCSC----CTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSC---CTT
T ss_pred             cCCCEEEeCCCCCCC---------CCCC----CCCCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhh---ccc
Confidence            368899999888773         3332    23589999999999988875  35888999999988877532   246


Q ss_pred             CcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCC
Q 006695          102 LKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCF  181 (635)
Q Consensus       102 L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~  181 (635)
                      |++|++++|.+ ..+|+++.+++|+.|++++|... ..+.   ....+..+.+..+.... ......++.++.+.+.++.
T Consensus       100 L~~L~L~~n~l-~~lp~~~~l~~L~~L~l~~~~~~-~~~~---~~~~l~~l~~~~~~~~~-~~~l~~l~~l~~L~l~~n~  173 (353)
T d1jl5a_         100 LEYLGVSNNQL-EKLPELQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNS  173 (353)
T ss_dssp             CCEEECCSSCC-SSCCCCTTCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-ccccchhhhccceeecccccccc-cccc---ccccccchhhccccccc-cccccccccceeccccccc
Confidence            88999999874 56777888899999999887543 2222   34566677776544322 2222356777888877753


Q ss_pred             CCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCC
Q 006695          182 NLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKM  261 (635)
Q Consensus       182 ~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l  261 (635)
                       ....+......+.+...++.+..++. +..++.|+.+++++|.... .+   ....++..+.+.++..... +   ...
T Consensus       174 -~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~-~~---~~~~~l~~~~~~~~~~~~~-~---~~~  243 (353)
T d1jl5a_         174 -LKKLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKT-LP---DLPPSLEALNVRDNYLTDL-P---ELP  243 (353)
T ss_dssp             -CSSCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSS-CC---SCCTTCCEEECCSSCCSCC-C---CCC
T ss_pred             -cccccccccccccccccccccccccc-ccccccccccccccccccc-cc---ccccccccccccccccccc-c---ccc
Confidence             33444444556677777777766654 5678888888888876443 22   2345667777777655432 1   123


Q ss_pred             CCCCEEEecCCCccccC---chhccc----ccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCCCCcC
Q 006695          262 ESVKCISLERTAITELP---SSFANL----EGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSMLSSL  334 (635)
Q Consensus       262 ~~L~~L~L~~n~l~~lp---~~~~~l----~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~l  334 (635)
                      ..+...++..+.+..++   ......    ..+......+++|++|+|++|+++++|+.   +++|+.|+|++|++ +.+
T Consensus       244 ~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L-~~l  319 (353)
T d1jl5a_         244 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHL-AEV  319 (353)
T ss_dssp             TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCC
T ss_pred             ccccccccccccccccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcC-Ccc
Confidence            44555555555444322   111100    11222233457899999999999999864   57899999998764 578


Q ss_pred             CCCCCccceecccccccccccCccccCcccc
Q 006695          335 PELPQSLELLDAENCKQLQFIPEILSGLEEV  365 (635)
Q Consensus       335 p~l~~sL~~L~l~~c~~l~~~~~~~~~L~~L  365 (635)
                      |+.+++|++|++++|+ ++.+|.....++.|
T Consensus       320 ~~~~~~L~~L~L~~N~-L~~lp~~~~~L~~L  349 (353)
T d1jl5a_         320 PELPQNLKQLHVEYNP-LREFPDIPESVEDL  349 (353)
T ss_dssp             CCCCTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred             ccccCCCCEEECcCCc-CCCCCccccccCee
Confidence            9888999999999997 67788766555554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.84  E-value=2.8e-19  Score=183.92  Aligned_cols=291  Identities=20%  Similarity=0.204  Sum_probs=191.8

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      .|||+++.++.++.    -+++|++|++++|+++.         +|+.    +.+|+.|++.+|.++.++..  ++.|++
T Consensus        42 ~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~---------lp~~----~~~L~~L~l~~n~l~~l~~l--p~~L~~  102 (353)
T d1jl5a_          42 ELELNNLGLSSLPE----LPPHLESLVASCNSLTE---------LPEL----PQSLKSLLVDNNNLKALSDL--PPLLEY  102 (353)
T ss_dssp             EEECTTSCCSCCCS----CCTTCSEEECCSSCCSS---------CCCC----CTTCCEEECCSSCCSCCCSC--CTTCCE
T ss_pred             EEEeCCCCCCCCCC----CCCCCCEEECCCCCCcc---------cccc----hhhhhhhhhhhcccchhhhh--cccccc
Confidence            68999999988863    36799999999999983         4433    23599999999999888753  357999


Q ss_pred             EEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCCCCC-
Q 006695           82 LNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSL-  160 (635)
Q Consensus        82 L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l-  160 (635)
                      |++++|.++.+|. +..+++|+.|+++++.+.....   ....+..+.+..+...  ....++.++.++.+.+.+|... 
T Consensus       103 L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~---~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         103 LGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPD---LPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             EECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccccccc-hhhhccceeecccccccccccc---ccccccchhhcccccc--ccccccccccceecccccccccc
Confidence            9999999999975 5789999999999987543322   2355666666554322  2234566677777776665432 


Q ss_pred             ------------------CccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEee
Q 006695          161 ------------------RSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYIN  222 (635)
Q Consensus       161 ------------------~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~  222 (635)
                                        ..++....++.|+.+.++++ ....++....++..+.+..+.+...+..   ...+...++.
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n-~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~l~~~~~~  252 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTDLPEL---PQSLTFLDVS  252 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSCCCCC---CTTCCEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc---cccccccccc
Confidence                              22222224445555555443 2233344444455555555544443322   1233333333


Q ss_pred             cccccccchhcccCC-CCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEE
Q 006695          223 RCMRLKRLSTSICKL-KSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLN  301 (635)
Q Consensus       223 ~n~~~~~lp~~~~~l-~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~  301 (635)
                      .+...+     +..+ ......++..+.+.+    ....+++|++|++++|+|+++|..             +++|+.|+
T Consensus       253 ~~~~~~-----l~~l~~~~~~~~~~~~~~~~----~~~~~~~L~~L~Ls~N~l~~lp~~-------------~~~L~~L~  310 (353)
T d1jl5a_         253 ENIFSG-----LSELPPNLYYLNASSNEIRS----LCDLPPSLEELNVSNNKLIELPAL-------------PPRLERLI  310 (353)
T ss_dssp             SSCCSE-----ESCCCTTCCEEECCSSCCSE----ECCCCTTCCEEECCSSCCSCCCCC-------------CTTCCEEE
T ss_pred             cccccc-----cccccchhcccccccCcccc----ccccCCCCCEEECCCCccCccccc-------------cCCCCEEE
Confidence            322211     1111 233444444443322    234468999999999999999864             37899999


Q ss_pred             cCCCCCCcccccccCCCCccEEeccCCCCCCcCCCCCCccceeccc
Q 006695          302 LSRNDSESLPASITQLSQLRSLHLKDCSMLSSLPELPQSLELLDAE  347 (635)
Q Consensus       302 Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~l~~lp~l~~sL~~L~l~  347 (635)
                      |++|+++++|..   +++|++|+|++|+ ++.+|+.|.+|+.|.+.
T Consensus       311 L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L~~~  352 (353)
T d1jl5a_         311 ASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDLRMN  352 (353)
T ss_dssp             CCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEEECC
T ss_pred             CCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCeeECc
Confidence            999999999853   5689999999987 67899999999999874

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-19  Score=182.19  Aligned_cols=219  Identities=17%  Similarity=0.225  Sum_probs=137.4

Q ss_pred             EeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCC
Q 006695           59 YLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINL  136 (635)
Q Consensus        59 ~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l  136 (635)
                      .+..++..++++|..+ +.++++|+|++|+|+.+|. .+.++++|++|++++|++....+ .+..++.++.+....+...
T Consensus        15 ~v~c~~~~L~~iP~~i-p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~   93 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL   93 (284)
T ss_dssp             EEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred             EEEcCCCCCCccCCCC-CCCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            3456777788888765 3568888999998888875 47888888888888887655444 3667778888777655555


Q ss_pred             ccc-CccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCc-ccccCC
Q 006695          137 TCV-PSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPS-SIECLT  214 (635)
Q Consensus       137 ~~~-~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~-~~~~l~  214 (635)
                      ..+ +..+..+++|++|++++|......+..+                    ....+|+.+++++|.++.+|. .+..++
T Consensus        94 ~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------~~~~~L~~l~l~~N~l~~i~~~~f~~~~  153 (284)
T d1ozna_          94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--------------------RGLAALQYLYLQDNALQALPDDTFRDLG  153 (284)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--------------------TTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             ccccchhhcccccCCEEecCCccccccccccc--------------------chhcccchhhhccccccccChhHhcccc
Confidence            444 5557777778888777765322111111                    122345666666666666653 355666


Q ss_pred             CccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCC
Q 006695          215 NLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGG  294 (635)
Q Consensus       215 ~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~  294 (635)
                      +|+.|++++|.+....+..|.++++|+.+++++|.+.+..|..|..+++|++|++++|.++.++..         .+..+
T Consensus       154 ~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~---------~~~~~  224 (284)
T d1ozna_         154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE---------ALAPL  224 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHH---------HHTTC
T ss_pred             chhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccccccccc---------ccccc
Confidence            666666666666555555666666666666666666665666666666666666666666655432         12334


Q ss_pred             CCccEEEcCCCCC
Q 006695          295 SSLRQLNLSRNDS  307 (635)
Q Consensus       295 ~~L~~L~Ls~n~~  307 (635)
                      ++|+.|+|++|.+
T Consensus       225 ~~L~~L~l~~N~l  237 (284)
T d1ozna_         225 RALQYLRLNDNPW  237 (284)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cccCEEEecCCCC
Confidence            4555555555543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-19  Score=181.39  Aligned_cols=204  Identities=19%  Similarity=0.223  Sum_probs=170.7

Q ss_pred             CCccceEeecCCCCCCCCCCC-C-CCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCE
Q 006695           53 LPNELRYLHWHEYPSKALPFD-F-EPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMP--DLSETPNLER  127 (635)
Q Consensus        53 l~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~  127 (635)
                      +|..+++|++++|.++.+|.. | ++++|++|++++|++..++.. +..+..++.++...+.....++  .++++++|++
T Consensus        30 ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~  109 (284)
T d1ozna_          30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (284)
T ss_dssp             CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCE
Confidence            345699999999999999986 6 799999999999999988654 4678899999887666566655  4899999999


Q ss_pred             EeecCCCCCcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccC
Q 006695          128 TNLKNCINLTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVP  207 (635)
Q Consensus       128 L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp  207 (635)
                      |++++|......+..+...++|+.+++++|. ++.+|...                   -....+|+.|++++|.++.++
T Consensus       110 L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-l~~i~~~~-------------------f~~~~~L~~L~l~~N~l~~l~  169 (284)
T d1ozna_         110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDT-------------------FRDLGNLTHLFLHGNRISSVP  169 (284)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT-------------------TTTCTTCCEEECCSSCCCEEC
T ss_pred             EecCCcccccccccccchhcccchhhhcccc-ccccChhH-------------------hccccchhhcccccCcccccc
Confidence            9999997766666778889999999999865 34444311                   012246777888888888886


Q ss_pred             c-ccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccc
Q 006695          208 S-SIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITE  276 (635)
Q Consensus       208 ~-~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  276 (635)
                      . .+.++++|+++++++|++.+..|..|.++++|++|++++|.+.+..+..|+.+++|+.|++++|.+..
T Consensus       170 ~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C  239 (284)
T d1ozna_         170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (284)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             hhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence            4 58899999999999999999889999999999999999999999889999999999999999998873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=3.7e-19  Score=176.64  Aligned_cols=97  Identities=16%  Similarity=0.152  Sum_probs=59.1

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccc-cCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWE-GKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~-~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      +...+.+++.++++|..+ +++|++|+|++|+|+.++. .+.++++|++|+|++|++ +.+|.++.+++|++|+|++|. 
T Consensus        12 ~~~v~C~~~~L~~iP~~l-p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~L~Ls~N~-   88 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGTLDLSHNQ-   88 (266)
T ss_dssp             CCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCEEECCSSC-
T ss_pred             CeEEEccCCCCCeeCcCc-CcCCCEEECcCCcCCCcCHHHhhccccccccccccccc-ccccccccccccccccccccc-
Confidence            344566666777777655 2567777777777777763 467777777777777764 345555666666666666663 


Q ss_pred             CcccCccccCCCCCCEEeecC
Q 006695          136 LTCVPSSVQNFNHLSMLCFEG  156 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~  156 (635)
                      +...+..+..+++|+.|++++
T Consensus        89 l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          89 LQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             CSSCCCCTTTCTTCCEEECCS
T ss_pred             ccccccccccccccccccccc
Confidence            233344444444444444444

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=7.8e-19  Score=174.20  Aligned_cols=130  Identities=22%  Similarity=0.192  Sum_probs=99.0

Q ss_pred             CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      +|++|+|++|.++.++..+..+++|+.|++++|.+.+..+..+..+.+++.|++++|.+....+..+..+++|+.|++++
T Consensus        78 ~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          78 VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN  157 (266)
T ss_dssp             TCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cccccccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccc
Confidence            45555555566666666677778888888888877776677777788888888888877776677777888888888888


Q ss_pred             CCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          272 TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       272 n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      |+++.+|..         .+..+++|++|+|++|+++.+|.++..+++|+.|+|++|+.
T Consensus       158 N~l~~~~~~---------~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         158 NNLTELPAG---------LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCSCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccCcc---------ccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            888877653         23456788888888888888888888888888888888754

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.2e-16  Score=154.36  Aligned_cols=203  Identities=13%  Similarity=0.191  Sum_probs=120.2

Q ss_pred             eecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCccc
Q 006695           60 LHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCV  139 (635)
Q Consensus        60 L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~  139 (635)
                      +.+..+.+..+...-.+.+|+.|++.+|+|+.+ +++..+++|++|++++|.+. .++.+..+++|+.+++++|.. +.+
T Consensus        24 ~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~-~~~~l~~l~~l~~l~~~~n~~-~~i  100 (227)
T d1h6ua2          24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPL-KNV  100 (227)
T ss_dssp             HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCCC-SCC
T ss_pred             HHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceee-ccccccccccccccccccccc-ccc
Confidence            334444444432222456778888888888777 46777888888888887644 344477777777777777643 233


Q ss_pred             CccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEE
Q 006695          140 PSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKL  219 (635)
Q Consensus       140 ~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L  219 (635)
                      + .+..+++|+.+++++|.... ++                                            .+...+.++.+
T Consensus       101 ~-~l~~l~~L~~l~l~~~~~~~-~~--------------------------------------------~~~~~~~~~~l  134 (227)
T d1h6ua2         101 S-AIAGLQSIKTLDLTSTQITD-VT--------------------------------------------PLAGLSNLQVL  134 (227)
T ss_dssp             G-GGTTCTTCCEEECTTSCCCC-CG--------------------------------------------GGTTCTTCCEE
T ss_pred             c-cccccccccccccccccccc-cc--------------------------------------------hhccccchhhh
Confidence            2 45666666666666543221 10                                            12223344444


Q ss_pred             EeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccE
Q 006695          220 YINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQ  299 (635)
Q Consensus       220 ~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~  299 (635)
                      .++++.+....  .+..+++|+.|++++|......  .++.+++|+.|++++|+++.++. +          ..+++|++
T Consensus       135 ~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l~~-l----------~~l~~L~~  199 (227)
T d1h6ua2         135 YLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDISP-L----------ASLPNLIE  199 (227)
T ss_dssp             ECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-G----------GGCTTCCE
T ss_pred             hchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCccCCChh-h----------cCCCCCCE
Confidence            44444333221  2344555666666665544322  25666777777777777766543 2          34567777


Q ss_pred             EEcCCCCCCcccccccCCCCccEEeccC
Q 006695          300 LNLSRNDSESLPASITQLSQLRSLHLKD  327 (635)
Q Consensus       300 L~Ls~n~~~~lp~~l~~l~~L~~L~L~~  327 (635)
                      |+|++|++++++ .++++++|+.|++++
T Consensus       200 L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         200 VHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             EECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            777777777776 377788888888763

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.4e-16  Score=151.52  Aligned_cols=101  Identities=22%  Similarity=0.286  Sum_probs=72.9

Q ss_pred             ceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCcccccc-CCCCCCCcEEEccCCCCCCCCC--CCCCCCCCCEEeecCC
Q 006695           57 LRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEG-KKRAFKLKYVDIHNSQYLIRMP--DLSETPNLERTNLKNC  133 (635)
Q Consensus        57 L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~-~~~l~~L~~L~Ls~n~~~~~~p--~l~~l~~L~~L~L~~n  133 (635)
                      .+.++..+..++++|..+. .++++|++++|+|+.++.. +.++++|++|++++|.+...++  .|.+++++++|.+..+
T Consensus        10 ~~~i~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP-RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC-SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CCEEEEeCCCCCCcCCCCC-CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            3566677777778887652 5788888888888888764 6788888888888888766554  3677888888887654


Q ss_pred             CCC-cccCccccCCCCCCEEeecCCC
Q 006695          134 INL-TCVPSSVQNFNHLSMLCFEGCK  158 (635)
Q Consensus       134 ~~l-~~~~~~i~~l~~L~~L~L~~~~  158 (635)
                      ... ...+..+..+++|+.|++++|.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             ccccccccccccccccccccccchhh
Confidence            444 3344556778888888887754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=4.5e-15  Score=144.26  Aligned_cols=83  Identities=14%  Similarity=0.064  Sum_probs=59.1

Q ss_pred             eEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcccCc-cccCCCCCCEEeecCC
Q 006695           80 VKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTCVPS-SVQNFNHLSMLCFEGC  157 (635)
Q Consensus        80 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~~~~-~i~~l~~L~~L~L~~~  157 (635)
                      +.++.++.+++.+|+.+.  +++++|+|++|++....+ .|.++++|++|++++|.....++. .|..+++++.+.+..+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            567778888888887663  578889999888544333 378888888888888876665543 5677888888877665


Q ss_pred             CCCCccC
Q 006695          158 KSLRSFP  164 (635)
Q Consensus       158 ~~l~~lp  164 (635)
                      +.+..++
T Consensus        89 n~l~~~~   95 (242)
T d1xwdc1          89 NNLLYIN   95 (242)
T ss_dssp             TTCCEEC
T ss_pred             ccccccc
Confidence            5444433

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=4.6e-15  Score=142.92  Aligned_cols=99  Identities=10%  Similarity=0.119  Sum_probs=73.1

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      +|++|.+.++.+++++..-.+++|++|++++|.+..++ .+..+++|+++++++|.+ +.++.+.++++|+.+++++|..
T Consensus        42 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~-~l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA-PLKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEECTTSCC
T ss_pred             CcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccc-cccccccccccccccccc-cccccccccccccccccccccc
Confidence            47788888888877754336888888888888888774 378888899999988874 4567788889999999988754


Q ss_pred             CcccCccccCCCCCCEEeecCCC
Q 006695          136 LTCVPSSVQNFNHLSMLCFEGCK  158 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~~~  158 (635)
                      ...  ..+...+.++.+.++++.
T Consensus       120 ~~~--~~~~~~~~~~~l~~~~~~  140 (227)
T d1h6ua2         120 TDV--TPLAGLSNLQVLYLDLNQ  140 (227)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSC
T ss_pred             ccc--chhccccchhhhhchhhh
Confidence            432  235566777777776543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.59  E-value=1.1e-14  Score=137.24  Aligned_cols=76  Identities=21%  Similarity=0.373  Sum_probs=43.7

Q ss_pred             ccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc
Q 006695          234 ICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS  313 (635)
Q Consensus       234 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~  313 (635)
                      +..+++|+.|++++|.+.. + +.+..+++|+.|++.+|+++.++.           +.++++|++|++++|+++.++ .
T Consensus       124 ~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l~~-----------l~~l~~L~~L~ls~N~i~~i~-~  189 (199)
T d2omxa2         124 LKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDLKP-----------LANLTTLERLDISSNKVSDIS-V  189 (199)
T ss_dssp             GTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCCGG-----------GTTCTTCCEEECCSSCCCCCG-G
T ss_pred             cchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCCcc-----------ccCCCCCCEEECCCCCCCCCc-c
Confidence            3445555555555554432 2 235556666666666666665542           234466777777777766665 3


Q ss_pred             ccCCCCccEE
Q 006695          314 ITQLSQLRSL  323 (635)
Q Consensus       314 l~~l~~L~~L  323 (635)
                      ++++++|++|
T Consensus       190 l~~L~~L~~L  199 (199)
T d2omxa2         190 LAKLTNLESL  199 (199)
T ss_dssp             GGGCTTCSEE
T ss_pred             ccCCCCCCcC
Confidence            6666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.58  E-value=2.7e-15  Score=140.58  Aligned_cols=171  Identities=19%  Similarity=0.215  Sum_probs=123.0

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccc-hhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRL-STSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~l-p~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      +.++.++++++++|..+.  +++++|+|++|++.+.+ +..|.++++|+.|+|++|.+....+..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            467777788888887653  67888888888886543 556778888888888888888888888888888888888888


Q ss_pred             CccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCcCCC--CCCccceeccccc
Q 006695          273 AITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSSLPE--LPQSLELLDAENC  349 (635)
Q Consensus       273 ~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~lp~--l~~sL~~L~l~~c  349 (635)
                      +|+.+|..         .+.++++|++|+|++|+++.+|.. +..+++|++|+|++|+.....+.  +...++.+.+..+
T Consensus        89 ~l~~l~~~---------~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~  159 (192)
T d1w8aa_          89 KIKEISNK---------MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGG  159 (192)
T ss_dssp             CCCEECSS---------SSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGG
T ss_pred             cccccCHH---------HHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCC
Confidence            88888653         245668888888888888888654 68888999999988876544322  2234555555554


Q ss_pred             ccccccCccccCccccchhhhhhhhhccc
Q 006695          350 KQLQFIPEILSGLEEVDASVLEKATFLNS  378 (635)
Q Consensus       350 ~~l~~~~~~~~~L~~L~~l~L~~n~~~~~  378 (635)
                      ...-..|   ..+..++.++|+.|.+.+.
T Consensus       160 ~~~c~~p---~~l~~~~l~~L~~n~l~C~  185 (192)
T d1w8aa_         160 AARCGAP---SKVRDVQIKDLPHSEFKCS  185 (192)
T ss_dssp             GCBBCSS---TTTTTSBGGGSCTTTCCCC
T ss_pred             CeEeCCC---hhhcCCEeeecCHhhCcCC
Confidence            4332333   3455567778877776554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=8.9e-15  Score=137.85  Aligned_cols=80  Identities=15%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      .+.+|++|++++++++.+ +++..+++|++|++++|++. .++.++++++|++|++++|... .++ .++.+++|+.|++
T Consensus        38 ~l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~-~~~~l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTL  113 (199)
T ss_dssp             HHTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEEC
T ss_pred             HhcCCCEEECCCCCCCCc-cccccCCCcCcCcccccccc-CcccccCCcccccccccccccc-ccc-ccccccccccccc
Confidence            356777777777777766 45677777777777777643 3445777777777777776432 232 3566666666666


Q ss_pred             cCCC
Q 006695          155 EGCK  158 (635)
Q Consensus       155 ~~~~  158 (635)
                      ++|.
T Consensus       114 ~~~~  117 (199)
T d2omxa2         114 FNNQ  117 (199)
T ss_dssp             CSSC
T ss_pred             cccc
Confidence            6544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.57  E-value=4.7e-15  Score=141.05  Aligned_cols=163  Identities=18%  Similarity=0.179  Sum_probs=112.3

Q ss_pred             cceEeecCCCCCCCCCCCCCCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCC
Q 006695           56 ELRYLHWHEYPSKALPFDFEPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCIN  135 (635)
Q Consensus        56 ~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~  135 (635)
                      +|++|+++++.++.++..-.+++|++|++++|+++.++ .+..+++|++|++++|++ +.+|.+..+++|+.|++++|..
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i-~~l~~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKV-KDLSSLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC-CCGGGGTTCTTCCEEECTTSCC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcc-ccccCccccccccccccc-cccccccccccccccccccccc
Confidence            47777888888777765336778888888888888775 467788888888888874 4566778888888888888754


Q ss_pred             CcccCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCC
Q 006695          136 LTCVPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTN  215 (635)
Q Consensus       136 l~~~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~  215 (635)
                      . .+ ..+..+++|+.+++++|.. ...+....                     +++|+.+++++|.+++++. +.++++
T Consensus       125 ~-~~-~~l~~l~~l~~l~~~~n~l-~~~~~~~~---------------------l~~L~~l~l~~n~l~~i~~-l~~l~~  179 (210)
T d1h6ta2         125 S-DI-NGLVHLPQLESLYLGNNKI-TDITVLSR---------------------LTKLDTLSLEDNQISDIVP-LAGLTK  179 (210)
T ss_dssp             C-CC-GGGGGCTTCCEEECCSSCC-CCCGGGGG---------------------CTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred             c-cc-ccccccccccccccccccc-cccccccc---------------------ccccccccccccccccccc-ccCCCC
Confidence            3 23 3577788888888877642 22221112                     2455666666666666643 667777


Q ss_pred             ccEEEeecccccccchhcccCCCCCcEEecCC
Q 006695          216 LEKLYINRCMRLKRLSTSICKLKSLHVLVLDD  247 (635)
Q Consensus       216 L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~  247 (635)
                      |++|++++|.+. .++ .+.++++|++|+|++
T Consensus       180 L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         180 LQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             CCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            888888777654 344 477777888887754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.56  E-value=1.6e-14  Score=137.30  Aligned_cols=166  Identities=14%  Similarity=0.160  Sum_probs=130.5

Q ss_pred             CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      .+.+|+.|+++++.++.++ ++..+++|++|+|++|++. .++.++.+++|+.|++++|. +..++ .+..+++|+.|++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~-~l~~~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcccc-CccccccCcccccccccccc-ccccc-ccccccccccccc
Confidence            4678999999999999875 6889999999999999854 46678899999999999985 44555 5888999999999


Q ss_pred             cCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEeccccccccCcccccCCCccEEEeecccccccchhcc
Q 006695          155 EGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSI  234 (635)
Q Consensus       155 ~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~  234 (635)
                      ++|... .++..                     ...++++.+++++|.++..+ .+..+++|+++++++|.+.+. + .+
T Consensus       120 ~~~~~~-~~~~l---------------------~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i-~-~l  174 (210)
T d1h6ta2         120 EHNGIS-DINGL---------------------VHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDI-V-PL  174 (210)
T ss_dssp             TTSCCC-CCGGG---------------------GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCC-G-GG
T ss_pred             cccccc-ccccc---------------------cccccccccccccccccccc-ccccccccccccccccccccc-c-cc
Confidence            887532 22221                     12245667777777776654 477889999999999988654 3 38


Q ss_pred             cCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          235 CKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       235 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      .++++|++|++++|.+. .++ .+..+++|++|+|++
T Consensus       175 ~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         175 AGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEEE
T ss_pred             cCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEccC
Confidence            89999999999999765 455 589999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.4e-16  Score=166.17  Aligned_cols=107  Identities=9%  Similarity=0.030  Sum_probs=77.7

Q ss_pred             eeecCCCcccccC-hhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCC-----CCCCC-
Q 006695            2 FLDLSKITSIHLS-PQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKA-----LPFDF-   74 (635)
Q Consensus         2 ~LdLs~n~~~~l~-~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-   74 (635)
                      .||++.+++.... ...+..+++||+|+|++|.++.    .+--.+...+...++ |++|++++|.+..     +...+ 
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~----~~~~~l~~~L~~~~~-L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTE----ARCKDISSALRVNPA-LAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCH----HHHHHHHHHHHTCTT-CCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCH----HHHHHHHHHHhcCCC-CCEEECcCCcCChHHHHHHHHHHh
Confidence            5899999887654 4457789999999999998771    111123445556655 9999999998742     22233 


Q ss_pred             -CCCCceEEEcCCCCCcc-----ccccCCCCCCCcEEEccCCCCC
Q 006695           75 -EPENLVKLNLPYSKVVQ-----IWEGKKRAFKLKYVDIHNSQYL  113 (635)
Q Consensus        75 -~l~~L~~L~L~~n~l~~-----l~~~~~~l~~L~~L~Ls~n~~~  113 (635)
                       ...+|++|++++|+++.     ++..+..+++|++|+|++|.+.
T Consensus        81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             cCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence             23579999999999874     4456788899999999998753

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=9.7e-15  Score=136.76  Aligned_cols=167  Identities=18%  Similarity=0.175  Sum_probs=129.7

Q ss_pred             EEecCCCCCCCccCc-ccCCcceEEeccccccc-cC-cccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCC
Q 006695          174 KIDFSSCFNLTEFPQ-ISGNITDLILSETAIQE-VP-SSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSK  250 (635)
Q Consensus       174 ~L~l~~c~~l~~~p~-~~~~L~~L~L~~n~i~~-lp-~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~  250 (635)
                      .++.++ ..++.+|. .+.++++|+|++|.|+. ++ ..|.++++|+.|+|++|.+....+..+..+++|++|+|++|.+
T Consensus        12 ~v~Cs~-~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l   90 (192)
T d1w8aa_          12 TVDCTG-RGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             EEECTT-SCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             EEEEeC-CCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc
Confidence            344443 34556664 34689999999999986 43 4589999999999999999999999999999999999999999


Q ss_pred             CCcchhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          251 LERFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       251 ~~~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      ....+.+|.++++|++|+|++|+|+.+|..         .+..+++|++|+|++|.+........-...++.+.+..+..
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~---------~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~  161 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPG---------SFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAA  161 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTT---------SSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGC
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHH---------HhcCCcccccccccccccccccchHHHhhhhhhhcccCCCe
Confidence            888888999999999999999999998763         24567899999999999865543211123456666777666


Q ss_pred             CCcCCCCCCccceecccccc
Q 006695          331 LSSLPELPQSLELLDAENCK  350 (635)
Q Consensus       331 l~~lp~l~~sL~~L~l~~c~  350 (635)
                      ....|..+..++.++++.+.
T Consensus       162 ~c~~p~~l~~~~l~~L~~n~  181 (192)
T d1w8aa_         162 RCGAPSKVRDVQIKDLPHSE  181 (192)
T ss_dssp             BBCSSTTTTTSBGGGSCTTT
T ss_pred             EeCCChhhcCCEeeecCHhh
Confidence            66667666677777777654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.3e-14  Score=142.79  Aligned_cols=84  Identities=18%  Similarity=0.259  Sum_probs=42.6

Q ss_pred             CCCCceEEEcCCCCCcc--ccccCCCCCCCcEEEccCCCCCCCCC-CCCCCCCCCEEeecCCCCCcc--cCccccCCCCC
Q 006695           75 EPENLVKLNLPYSKVVQ--IWEGKKRAFKLKYVDIHNSQYLIRMP-DLSETPNLERTNLKNCINLTC--VPSSVQNFNHL  149 (635)
Q Consensus        75 ~l~~L~~L~L~~n~l~~--l~~~~~~l~~L~~L~Ls~n~~~~~~p-~l~~l~~L~~L~L~~n~~l~~--~~~~i~~l~~L  149 (635)
                      ...+|++|+++++.+..  +...+..+++|++|+|++|.+....+ .++.+++|++|++++|..++.  +...+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            45566666766665542  33334556666666666665332222 244555666666666544332  11112344555


Q ss_pred             CEEeecCCC
Q 006695          150 SMLCFEGCK  158 (635)
Q Consensus       150 ~~L~L~~~~  158 (635)
                      ++|++++|.
T Consensus       124 ~~L~ls~c~  132 (284)
T d2astb2         124 DELNLSWCF  132 (284)
T ss_dssp             CEEECCCCT
T ss_pred             ccccccccc
Confidence            555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.4e-13  Score=123.19  Aligned_cols=123  Identities=16%  Similarity=0.132  Sum_probs=74.1

Q ss_pred             CcceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          192 NITDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       192 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      ++++|+|++|+|+.++..+..+++|+.|+|++|.+...  +.+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccceecc
Confidence            56677777777777766566677777777777765532  2356666777777777665554444455666666666666


Q ss_pred             CCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc----cccCCCCccEEe
Q 006695          272 TAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA----SITQLSQLRSLH  324 (635)
Q Consensus       272 n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~----~l~~l~~L~~L~  324 (635)
                      |.|+.++. +.       .+..+++|++|++++|.+..+|.    .+..+++|+.||
T Consensus        97 N~i~~~~~-l~-------~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          97 NSLVELGD-LD-------PLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCCCCGGG-GG-------GGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cccccccc-cc-------ccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66665543 10       11334566666666666655553    245555555555

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-13  Score=137.74  Aligned_cols=193  Identities=20%  Similarity=0.279  Sum_probs=133.5

Q ss_pred             eEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCC-CC-CCCCCCCCEEeecCCCCCcccCccccCCCCCCEEeecCC
Q 006695           80 VKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRM-PD-LSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCFEGC  157 (635)
Q Consensus        80 ~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~-p~-l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L~~~  157 (635)
                      ..+.++.+.+...........+|++|||++|.+.... +. +..+++|++|+|++|......+..++.+++|++|++++|
T Consensus        26 ~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          26 IAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGC  105 (284)
T ss_dssp             SEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred             eEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCcccccc
Confidence            3444444444433333445568888888888654322 22 677888889988888766666777888888899998888


Q ss_pred             CCCCccC--CCC-CCCCCcEEecCCCCCCCcc------CcccCCcceEEeccc--ccc--ccCcccccCCCccEEEeecc
Q 006695          158 KSLRSFP--SNL-HFMSPIKIDFSSCFNLTEF------PQISGNITDLILSET--AIQ--EVPSSIECLTNLEKLYINRC  224 (635)
Q Consensus       158 ~~l~~lp--~~~-~l~~L~~L~l~~c~~l~~~------p~~~~~L~~L~L~~n--~i~--~lp~~~~~l~~L~~L~L~~n  224 (635)
                      ..++...  ... .+++|++|++++|..++.-      ....++|+.|+++++  .++  .+...+.++++|++|++++|
T Consensus       106 ~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~  185 (284)
T d2astb2         106 SGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS  185 (284)
T ss_dssp             BSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTC
T ss_pred             ccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccc
Confidence            7665321  111 5788888888888776532      122367888888864  333  23344567889999999987


Q ss_pred             cc-cccchhcccCCCCCcEEecCCCCCC-CcchhhhcCCCCCCEEEecCC
Q 006695          225 MR-LKRLSTSICKLKSLHVLVLDDCSKL-ERFPEILEKMESVKCISLERT  272 (635)
Q Consensus       225 ~~-~~~lp~~~~~l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~L~~n  272 (635)
                      .. .......+.++++|++|++++|... ......++.+++|+.|+++++
T Consensus       186 ~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         186 VMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            64 4456667888999999999997543 444556788899999999887

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.9e-14  Score=151.03  Aligned_cols=344  Identities=14%  Similarity=0.106  Sum_probs=180.7

Q ss_pred             CCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCC-----CCCCC-CCCCceEEEcCCCCCcc----
Q 006695           22 PNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKA-----LPFDF-EPENLVKLNLPYSKVVQ----   91 (635)
Q Consensus        22 ~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~-----lp~~~-~l~~L~~L~L~~n~l~~----   91 (635)
                      .+|+.|+++.|+++..       .+.+-+..+ .++++|++++|.+..     ++..+ ..++|++|+|++|.|+.    
T Consensus         2 ~~l~~ld~~~~~i~~~-------~~~~l~~~l-~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~   73 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDA-------RWAELLPLL-QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH   73 (460)
T ss_dssp             EEEEEEEEESCCCCHH-------HHHHHHHHH-TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH
T ss_pred             CCCCEEEeeCCcCChH-------HHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHH
Confidence            3689999999988721       111112222 248889999887652     12222 56789999999988862    


Q ss_pred             -ccccCC-CCCCCcEEEccCCCCCCC----CC-CCCCCCCCCEEeecCCCCCccc----Ccccc-CCCCCCEEeecCCCC
Q 006695           92 -IWEGKK-RAFKLKYVDIHNSQYLIR----MP-DLSETPNLERTNLKNCINLTCV----PSSVQ-NFNHLSMLCFEGCKS  159 (635)
Q Consensus        92 -l~~~~~-~l~~L~~L~Ls~n~~~~~----~p-~l~~l~~L~~L~L~~n~~l~~~----~~~i~-~l~~L~~L~L~~~~~  159 (635)
                       +.+.+. ...+|++|+|++|++...    ++ .+..+++|++|++++|.....-    ...+. ...............
T Consensus        74 ~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  153 (460)
T d1z7xw1          74 CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSL  153 (460)
T ss_dssp             HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred             HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhccccccccccccccccccc
Confidence             333333 335789999998875432    12 3677888999998887543211    11111 111222232222111


Q ss_pred             CCccC----CC-CCCCCCcEEecCCCCCCCc--------cCcccCCcceEEecccccccc-----CcccccCCCccEEEe
Q 006695          160 LRSFP----SN-LHFMSPIKIDFSSCFNLTE--------FPQISGNITDLILSETAIQEV-----PSSIECLTNLEKLYI  221 (635)
Q Consensus       160 l~~lp----~~-~~l~~L~~L~l~~c~~l~~--------~p~~~~~L~~L~L~~n~i~~l-----p~~~~~l~~L~~L~L  221 (635)
                      ...-.    .. .....++.+.++++.....        +.........+.+..+.+...     ...+...+.++.+++
T Consensus       154 ~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  233 (460)
T d1z7xw1         154 SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELAL  233 (460)
T ss_dssp             BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred             chhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccch
Confidence            10000    00 0234556666665432211        011112345566655544321     122445667777777


Q ss_pred             ecccccc-----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccCchhcccccchhhcc
Q 006695          222 NRCMRLK-----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYI  292 (635)
Q Consensus       222 ~~n~~~~-----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~  292 (635)
                      .+|....     ...........|+.+++++|.+...    ....+...+.++.+++++|.++...  +..+.  ..+..
T Consensus       234 ~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~--~~~l~--~~l~~  309 (460)
T d1z7xw1         234 GSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLC--ETLLE  309 (460)
T ss_dssp             CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHH--HHHTS
T ss_pred             hhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccc--cchhh--ccccc
Confidence            7765432     1223344566777777777765432    2234455677777777777765210  00000  01122


Q ss_pred             CCCCccEEEcCCCCCCccc-----ccccCCCCccEEeccCCCCCC----cCC----CCCCccceecccccccc----ccc
Q 006695          293 GGSSLRQLNLSRNDSESLP-----ASITQLSQLRSLHLKDCSMLS----SLP----ELPQSLELLDAENCKQL----QFI  355 (635)
Q Consensus       293 ~~~~L~~L~Ls~n~~~~lp-----~~l~~l~~L~~L~L~~n~~l~----~lp----~l~~sL~~L~l~~c~~l----~~~  355 (635)
                      ....|+.+++++|.++...     ..+...++|++|+|++|++..    .++    ...+.|++|++++|...    ..+
T Consensus       310 ~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  389 (460)
T d1z7xw1         310 PGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  389 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHH
Confidence            3356777777777654321     223455667777777766532    122    22345777777777542    123


Q ss_pred             CccccCccccchhhhhhhhhcc
Q 006695          356 PEILSGLEEVDASVLEKATFLN  377 (635)
Q Consensus       356 ~~~~~~L~~L~~l~L~~n~~~~  377 (635)
                      +..+...++|+.|+|++|++..
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSCCH
T ss_pred             HHHHhcCCCCCEEECCCCcCCH
Confidence            3445556667777777776643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=3.1e-12  Score=110.21  Aligned_cols=105  Identities=16%  Similarity=0.140  Sum_probs=67.4

Q ss_pred             ceEEeccccccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecCCC
Q 006695          194 TDLILSETAIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLERTA  273 (635)
Q Consensus       194 ~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~n~  273 (635)
                      +.|+|++|+|+.++. ++.+++|++|++++|.+. .+|..++.+++|+.|++++|.+.+ +| .+..+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCc
Confidence            467788888887763 777777888888777664 455566777777777777766544 33 36667777777777777


Q ss_pred             ccccCchhcccccchhhccCCCCccEEEcCCCCCCcc
Q 006695          274 ITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESL  310 (635)
Q Consensus       274 l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~l  310 (635)
                      |+.+|..        ..+..+++|+.|++++|++..+
T Consensus        77 i~~~~~~--------~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          77 LQQSAAI--------QPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCSSSTT--------GGGGGCTTCCEEECTTSGGGGS
T ss_pred             cCCCCCc--------hhhcCCCCCCEEECCCCcCCcC
Confidence            6665531        0123345666666666665443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.1e-12  Score=118.71  Aligned_cols=83  Identities=12%  Similarity=0.021  Sum_probs=53.6

Q ss_pred             CCCCceEEEcCCCCCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCCCCCcccCccccCCCCCCEEee
Q 006695           75 EPENLVKLNLPYSKVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNCINLTCVPSSVQNFNHLSMLCF  154 (635)
Q Consensus        75 ~l~~L~~L~L~~n~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n~~l~~~~~~i~~l~~L~~L~L  154 (635)
                      ++.+|++|+|++|+|+.++.....+++|+.|+|++|++. .++.+..+++|++|++++|......+..+..+++|+.|++
T Consensus        16 n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             CcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            455677777777777777655566777777777777643 4466777777777777777443322223445666666666


Q ss_pred             cCCC
Q 006695          155 EGCK  158 (635)
Q Consensus       155 ~~~~  158 (635)
                      ++|+
T Consensus        95 ~~N~   98 (162)
T d1a9na_          95 TNNS   98 (162)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            6543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=2.6e-12  Score=110.72  Aligned_cols=99  Identities=14%  Similarity=0.078  Sum_probs=58.2

Q ss_pred             eeecCCCcccccChhhhcCCCCCcEEEeecCCCCCCcccceeeecCCcccCCCccceEeecCCCCCCCCCCCCCCCCceE
Q 006695            2 FLDLSKITSIHLSPQAFANMPNLRFLKFYMPEHNGVPIMISKVHLDQGLEYLPNELRYLHWHEYPSKALPFDFEPENLVK   81 (635)
Q Consensus         2 ~LdLs~n~~~~l~~~~f~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~~l~~l~~~L~~L~l~~~~l~~lp~~~~l~~L~~   81 (635)
                      +|||++|++..++  .++++++|++|++++|.++         .+|.++..+++ |+.|++++|.++.+|....+++|++
T Consensus         2 ~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~---------~lp~~~~~l~~-L~~L~l~~N~i~~l~~~~~l~~L~~   69 (124)
T d1dcea3           2 VLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR---------ALPPALAALRC-LEVLQASDNALENVDGVANLPRLQE   69 (124)
T ss_dssp             EEECTTSCCSSCC--CGGGGTTCCEEECCSSCCC---------CCCGGGGGCTT-CCEEECCSSCCCCCGGGTTCSSCCE
T ss_pred             EEEcCCCCCCCCc--ccccCCCCCEEECCCCccC---------cchhhhhhhhc-ccccccccccccccCccccccccCe
Confidence            5777777776664  3677777777777777766         34444544443 6666666666655554335555556


Q ss_pred             EEcCCCCCcccc--ccCCCCCCCcEEEccCCCC
Q 006695           82 LNLPYSKVVQIW--EGKKRAFKLKYVDIHNSQY  112 (635)
Q Consensus        82 L~L~~n~l~~l~--~~~~~l~~L~~L~Ls~n~~  112 (635)
                      |++++|+++.++  ..+..+++|+.|++++|++
T Consensus        70 L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          70 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             EECCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            666555555543  2345555555555555553

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.25  E-value=1.9e-12  Score=132.44  Aligned_cols=242  Identities=13%  Similarity=0.128  Sum_probs=121.3

Q ss_pred             CCCceEEEcCCCCCc-----cccccCCCCCCCcEEEccCCCCCCCC---C--------CCCCCCCCCEEeecCCCCCcc-
Q 006695           76 PENLVKLNLPYSKVV-----QIWEGKKRAFKLKYVDIHNSQYLIRM---P--------DLSETPNLERTNLKNCINLTC-  138 (635)
Q Consensus        76 l~~L~~L~L~~n~l~-----~l~~~~~~l~~L~~L~Ls~n~~~~~~---p--------~l~~l~~L~~L~L~~n~~l~~-  138 (635)
                      ...|++|+|++|.+.     .+-..+...++|+.|+++++......   +        .+...++|+.|+|++|..... 
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            456777788777664     34455667777888887776432211   1        134556677777776643322 


Q ss_pred             ---cCccccCCCCCCEEeecCCCCCCccCCCCCCCCCcEEecCCCCCCCccCcccCCcceEEecccccc-----ccCccc
Q 006695          139 ---VPSSVQNFNHLSMLCFEGCKSLRSFPSNLHFMSPIKIDFSSCFNLTEFPQISGNITDLILSETAIQ-----EVPSSI  210 (635)
Q Consensus       139 ---~~~~i~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~l~~c~~l~~~p~~~~~L~~L~L~~n~i~-----~lp~~~  210 (635)
                         +...+...++|+.|++++|.....-...+ ...+..+..      .........|+.+.+++|.++     .+...+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l-~~~l~~~~~------~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l  182 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKI-ARALQELAV------NKKAKNAPPLRSIICGRNRLENGSMKEWAKTF  182 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHH-HHHHHHHHH------HHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred             ccchhhhhcccccchheecccccccccccccc-ccccccccc------ccccccCcccceeecccccccccccccccchh
Confidence               22334455666666666653211000000 000000000      000011234555555555544     233335


Q ss_pred             ccCCCccEEEeeccccccc-----chhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCccccC-ch
Q 006695          211 ECLTNLEKLYINRCMRLKR-----LSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAITELP-SS  280 (635)
Q Consensus       211 ~~l~~L~~L~L~~n~~~~~-----lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~lp-~~  280 (635)
                      ...+.|+.|+|++|.+...     +...+..+++|+.|+|++|.+...    +...+..+++|++|++++|.|+.-. ..
T Consensus       183 ~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            5566777777777765431     233455666777777777665332    3345566677777777777665311 00


Q ss_pred             hcccccchhhc--cCCCCccEEEcCCCCCCc-----ccccc-cCCCCccEEeccCCCC
Q 006695          281 FANLEGLKDLY--IGGSSLRQLNLSRNDSES-----LPASI-TQLSQLRSLHLKDCSM  330 (635)
Q Consensus       281 ~~~l~~L~~l~--~~~~~L~~L~Ls~n~~~~-----lp~~l-~~l~~L~~L~L~~n~~  330 (635)
                      +      -..+  ...+.|++|++++|+++.     +...+ .++++|++|+|++|.+
T Consensus       263 l------~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         263 V------VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             H------HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             H------HHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            0      0111  123556777777776542     33333 2455666666666554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.11  E-value=6.5e-13  Score=124.56  Aligned_cols=129  Identities=16%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             cceEEeccc--cccccCcccccCCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEec
Q 006695          193 ITDLILSET--AIQEVPSSIECLTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLE  270 (635)
Q Consensus       193 L~~L~L~~n--~i~~lp~~~~~l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~  270 (635)
                      ++.+++.+.  .++.+|.++..+++|++|+|++|.+.. ++ .+.++++|++|+|++|.+. .++.....+++|+.|+++
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~  101 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWIS  101 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECS
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccccccccccccc
Confidence            344455443  456666777788888888888877653 33 4667778888888877653 445555556678888888


Q ss_pred             CCCccccCchhcccccchhhccCCCCccEEEcCCCCCCcccc--cccCCCCccEEeccCCCCCCcCC
Q 006695          271 RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPA--SITQLSQLRSLHLKDCSMLSSLP  335 (635)
Q Consensus       271 ~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~--~l~~l~~L~~L~L~~n~~l~~lp  335 (635)
                      +|.|+.++. +          ..+++|+.|++++|+++.++.  .+..+++|+.|+|++|++....+
T Consensus       102 ~N~i~~l~~-~----------~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         102 YNQIASLSG-I----------EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             EEECCCHHH-H----------HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             ccccccccc-c----------cccccccccccccchhccccccccccCCCccceeecCCCccccCcc
Confidence            888877642 2          234678888888888887763  57788888888888877654433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.05  E-value=7.1e-12  Score=127.99  Aligned_cols=68  Identities=6%  Similarity=0.068  Sum_probs=37.5

Q ss_pred             cccccCCCCCCCcEEEccCCCCCCCC-----CCCCCCCCCCEEeecCCCCCcc----------cCccccCCCCCCEEeec
Q 006695           91 QIWEGKKRAFKLKYVDIHNSQYLIRM-----PDLSETPNLERTNLKNCINLTC----------VPSSVQNFNHLSMLCFE  155 (635)
Q Consensus        91 ~l~~~~~~l~~L~~L~Ls~n~~~~~~-----p~l~~l~~L~~L~L~~n~~l~~----------~~~~i~~l~~L~~L~L~  155 (635)
                      .+...+....+|+.|+|++|.+...-     ..+...++|+.|+++++.....          +...+...++|+.|+++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            34445566777888888887643211     1356667777777776532111          11223445556666665


Q ss_pred             CCC
Q 006695          156 GCK  158 (635)
Q Consensus       156 ~~~  158 (635)
                      +|.
T Consensus       102 ~n~  104 (344)
T d2ca6a1         102 DNA  104 (344)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.3e-10  Score=99.50  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=56.8

Q ss_pred             cceEEeccccccccCcccccCCCccEEEeeccc-ccccchhcccCCCCCcEEecCCCCCCCcchhhhcCCCCCCEEEecC
Q 006695          193 ITDLILSETAIQEVPSSIECLTNLEKLYINRCM-RLKRLSTSICKLKSLHVLVLDDCSKLERFPEILEKMESVKCISLER  271 (635)
Q Consensus       193 L~~L~L~~n~i~~lp~~~~~l~~L~~L~L~~n~-~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~  271 (635)
                      .+.++.+++++.++|..+..+++|++|++++++ +....+..|.++++|+.|+|++|.+....+.+|..+++|++|+|++
T Consensus        10 ~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          10 SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             CCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccC
Confidence            345666777777777777777777777776654 3333345566667777777776666555566666666666666666


Q ss_pred             CCccccCch
Q 006695          272 TAITELPSS  280 (635)
Q Consensus       272 n~l~~lp~~  280 (635)
                      |+|+.+|..
T Consensus        90 N~l~~l~~~   98 (156)
T d2ifga3          90 NALESLSWK   98 (156)
T ss_dssp             SCCSCCCST
T ss_pred             CCCcccChh
Confidence            666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.98  E-value=4.6e-12  Score=118.62  Aligned_cols=54  Identities=15%  Similarity=0.070  Sum_probs=32.6

Q ss_pred             ceEEEcCCC--CCccccccCCCCCCCcEEEccCCCCCCCCCCCCCCCCCCEEeecCC
Q 006695           79 LVKLNLPYS--KVVQIWEGKKRAFKLKYVDIHNSQYLIRMPDLSETPNLERTNLKNC  133 (635)
Q Consensus        79 L~~L~L~~n--~l~~l~~~~~~l~~L~~L~Ls~n~~~~~~p~l~~l~~L~~L~L~~n  133 (635)
                      ++.+++.+.  .++.++..+..+++|++|+|++|++. .++.+.++++|+.|+|++|
T Consensus        25 ~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~-~i~~l~~l~~L~~L~Ls~N   80 (198)
T d1m9la_          25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KISSLSGMENLRILSLGRN   80 (198)
T ss_dssp             CSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEES-CCCCHHHHTTCCEEECCEE
T ss_pred             cceeeeecccCchhhhhhHHhcccccceeECcccCCC-CcccccCCccccChhhccc
Confidence            344444432  45566666667777777777777633 4455666666666666665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.5e-09  Score=95.46  Aligned_cols=108  Identities=19%  Similarity=0.143  Sum_probs=78.9

Q ss_pred             CCCccEEEeecccccccchhcccCCCCCcEEecCCCCCCC-cchhhhcCCCCCCEEEecCCCccccCchhcccccchhhc
Q 006695          213 LTNLEKLYINRCMRLKRLSTSICKLKSLHVLVLDDCSKLE-RFPEILEKMESVKCISLERTAITELPSSFANLEGLKDLY  291 (635)
Q Consensus       213 l~~L~~L~L~~n~~~~~lp~~~~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~  291 (635)
                      +...+.++.+++... ..|..+..+++|++|++++++.++ .-+..|.++++|+.|++++|+|+.++..         .+
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~---------~f   76 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD---------AF   76 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT---------GG
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccc---------cc
Confidence            344556777765554 456667788888999988776444 4456788888888899888888888642         24


Q ss_pred             cCCCCccEEEcCCCCCCcccccccCCCCccEEeccCCCC
Q 006695          292 IGGSSLRQLNLSRNDSESLPASITQLSQLRSLHLKDCSM  330 (635)
Q Consensus       292 ~~~~~L~~L~Ls~n~~~~lp~~l~~l~~L~~L~L~~n~~  330 (635)
                      ..+++|++|+|++|+++.+|..+....+|++|+|++|++
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          77 HFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             GSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cccccccceeccCCCCcccChhhhccccccccccCCCcc
Confidence            556888888888888888887665555788888888765

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=2.8e-07  Score=82.28  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCCccccc-ccCCCCccEEeccCCCCCCc
Q 006695          257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSESLPAS-ITQLSQLRSLHLKDCSMLSS  333 (635)
Q Consensus       257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~~lp~~-l~~l~~L~~L~L~~n~~l~~  333 (635)
                      .+..+++|++|+|++|+|+.++..       ...+..+++|+.|+|++|.++++++. .....+|+.|++++|++...
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~-------~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~  130 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDM-------SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDT  130 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGG-------GTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSS
T ss_pred             HHHhCCCCCEeeCCCccccCCchh-------HHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcC
Confidence            344566666666666666655431       11223456666777777776666541 22334566677777666543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1e-06  Score=78.56  Aligned_cols=85  Identities=18%  Similarity=0.157  Sum_probs=55.1

Q ss_pred             hhcccCCCCCcEEecCCCCCCCc--chhhhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCCCC
Q 006695          231 STSICKLKSLHVLVLDDCSKLER--FPEILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRNDSE  308 (635)
Q Consensus       231 p~~~~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~~~  308 (635)
                      +..+..+++|++|+|++|.+...  ++..+..+++|+.|++++|.|++++.. .        ......|+.|++++|.+.
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l-~--------~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSEREL-D--------KIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGH-H--------HHTTCCCSSCCCTTSTTS
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhh-h--------hhhccccceeecCCCCcC
Confidence            33344567777777777766543  345567778888888888888877641 1        123356788888888875


Q ss_pred             cccc--------cccCCCCccEEe
Q 006695          309 SLPA--------SITQLSQLRSLH  324 (635)
Q Consensus       309 ~lp~--------~l~~l~~L~~L~  324 (635)
                      ....        .+..+|+|+.||
T Consensus       129 ~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         129 DTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             SSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cCcccchhHHHHHHHHCCCCCEEC
Confidence            4321        246788888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=8e-05  Score=66.09  Aligned_cols=42  Identities=19%  Similarity=0.385  Sum_probs=19.7

Q ss_pred             ccCCCCCcEEecCCCCCCC----cchhhhcCCCCCCEEEecCCCcc
Q 006695          234 ICKLKSLHVLVLDDCSKLE----RFPEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       234 ~~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      +...+.|++|+|++|.+..    .+.+.+...+.|++|+|++|.|+
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            4444555555555554432    12233344455555555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.32  E-value=7.1e-05  Score=66.45  Aligned_cols=114  Identities=11%  Similarity=0.054  Sum_probs=67.6

Q ss_pred             CCcceEEeccc-ccc-----ccCcccccCCCccEEEeeccccccc----chhcccCCCCCcEEecCCCCCCCc----chh
Q 006695          191 GNITDLILSET-AIQ-----EVPSSIECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSKLER----FPE  256 (635)
Q Consensus       191 ~~L~~L~L~~n-~i~-----~lp~~~~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~~~~----~~~  256 (635)
                      ++|++|+|+++ .++     .+-..+...+.|++|+|++|.+...    +...+...+.|++|+|++|.+...    +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            34566666542 343     1223456667788888888876532    334455678888999988876543    334


Q ss_pred             hhcCCCCCCEEEecCCCccccCchhcccccchhhccCCCCccEEEcCCCC
Q 006695          257 ILEKMESVKCISLERTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND  306 (635)
Q Consensus       257 ~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~  306 (635)
                      .+...++|++|++++|.+..+....  ...+...+...++|+.|+++.+.
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~--~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQV--EMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHH--HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHH--HHHHHHHHHhCCCccEeeCcCCC
Confidence            5666777888888887766543211  11122333445666777666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.50  E-value=0.00083  Score=59.04  Aligned_cols=64  Identities=14%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             cCCCccEEEeeccc-ccc----cchhcccCCCCCcEEecCCCCCCCc----chhhhcCCCCCCEEEecCCCcc
Q 006695          212 CLTNLEKLYINRCM-RLK----RLSTSICKLKSLHVLVLDDCSKLER----FPEILEKMESVKCISLERTAIT  275 (635)
Q Consensus       212 ~l~~L~~L~L~~n~-~~~----~lp~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~  275 (635)
                      +.++|++|++++++ +..    .+-..+...++|++|++++|.+...    +...+...++++.+++++|.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            34555666665532 211    1223344555556666665544322    2223344455555555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.05  E-value=0.0018  Score=56.79  Aligned_cols=111  Identities=11%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             CCcceEEecc-cccc-----ccCcccccCCCccEEEeeccccccc----chhcccCCCCCcEEecCCCCCCCc----chh
Q 006695          191 GNITDLILSE-TAIQ-----EVPSSIECLTNLEKLYINRCMRLKR----LSTSICKLKSLHVLVLDDCSKLER----FPE  256 (635)
Q Consensus       191 ~~L~~L~L~~-n~i~-----~lp~~~~~l~~L~~L~L~~n~~~~~----lp~~~~~l~~L~~L~Ls~n~~~~~----~~~  256 (635)
                      ++|++|++++ +.|+     .+-..+...+.|++|++++|.+...    +...+...++++.+++++|.+...    +..
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~   96 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE   96 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHH
Confidence            3455555554 3343     2333455677888888888876433    334455678888888888776543    334


Q ss_pred             hhcCCCCCCEEEec--CCCccccCchhcccccchhhccCCCCccEEEcCCCC
Q 006695          257 ILEKMESVKCISLE--RTAITELPSSFANLEGLKDLYIGGSSLRQLNLSRND  306 (635)
Q Consensus       257 ~l~~l~~L~~L~L~--~n~l~~lp~~~~~l~~L~~l~~~~~~L~~L~Ls~n~  306 (635)
                      .+...++|+.++|+  +|.+..-  .   ...|...+...+.|+.|+++.+.
T Consensus        97 ~l~~~~~L~~l~L~l~~n~i~~~--~---~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          97 ALQSNTSLIELRIDNQSQPLGNN--V---EMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHH--H---HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCccccEEeeccCCCcCcHH--H---HHHHHHHHHhCCCcCEEeCcCCC
Confidence            55667777766554  3444320  0   01112222344566666665543