Citrus Sinensis ID: 006724
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 633 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W486 | 519 | Uncharacterized protein A | no | no | 0.717 | 0.874 | 0.353 | 8e-71 |
| >sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 268 bits (686), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 176/498 (35%), Positives = 260/498 (52%), Gaps = 44/498 (8%)
Query: 153 GLVLARMFKDDWVFSQRVVAEDNKQEPSMPIRVLEKISTPEIWMKPNSDNYYQCIARPKS 212
G+++ + +FS + + +EP+ P KI+ E+W S + A
Sbjct: 28 GVIVLLICTLSLLFSANI---GSNREPTRP----SKINVEELWESAKSGGWRPSSAPRSD 80
Query: 213 QISNNKKTNGYIVVHANGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTDPSDFKD 272
K+TNGY+ V NGGLNQ R+ IC+ V A+IMNATLVLP LD SFW D S F+
Sbjct: 81 WPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQG 140
Query: 273 IFDWRHFMNVLKDDVNIVEYLPTRYARKK----------PLLKAPVSWSKASYYRNEMVP 322
I+D HF+ LK DV IV +P + K P AP+ W Y +
Sbjct: 141 IYDVEHFIETLKYDVKIVGKIPDVHKNGKTKKIKAFQIRPPRDAPIEW-----YLTTALK 195
Query: 323 LLKKHKVIKFSHTDSRLANNGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSE 382
+++H I + RLA QRLRCR NY ALR+ I L + +VD+LR+
Sbjct: 196 AMREHSAIYLTPFSHRLAEEIDNPEYQRLRCRVNYHALRFKPHIMKLSESIVDKLRSQGH 255
Query: 383 PYVALHLRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRLQGGCPMS 442
++++HLR+E DMLAF GC EE + LR +Y +++ +K + +RR G CP++
Sbjct: 256 -FMSIHLRFEMDMLAFAGCFDIFNPEEQKILR--KYRKENFADKRLIYNERRAIGKCPLT 312
Query: 443 PREAALFLKALGYPSTTTIYIVAGEIYGSSS-MAAFREEFPNVFSHSTLATEEELEPFKP 501
P E L L+A+ + ++T IY+ AGE++G M FR FP + +HS++ EEL
Sbjct: 313 PEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRLDNHSSVDPSEELSATS- 371
Query: 502 YQNRL-AALDYLVALESDVFVHTYDG--NMAKAVQGHRRFEGFRKSINPDKQNIVRLIDQ 558
Q + +A+DY+V L SD+F+ TYDG N A + GHR + GFR +I PD++ + +
Sbjct: 372 -QGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRTTIRPDRKALAPIFIA 430
Query: 559 LDEGA-ISWEEFSSEVKSLHSDRLGGPYLRQPGESPRLEENFYANPFPGCICD----RSQ 613
++G +EE V + GGP+ R SP E+FY N +P C C +S
Sbjct: 431 REKGKRAGFEEAVRRV--MLKTNFGGPHKRV---SP---ESFYTNSWPECFCQMNPKKSS 482
Query: 614 ERVAGLKLDERLSSRAAS 631
++ + E L SR S
Sbjct: 483 DKCPPNNVIEILDSRLES 500
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 633 | ||||||
| 359481698 | 618 | PREDICTED: DUF246 domain-containing prot | 0.930 | 0.953 | 0.657 | 0.0 | |
| 297740263 | 515 | unnamed protein product [Vitis vinifera] | 0.797 | 0.980 | 0.755 | 0.0 | |
| 356494914 | 639 | PREDICTED: DUF246 domain-containing prot | 0.807 | 0.799 | 0.735 | 0.0 | |
| 356506797 | 630 | PREDICTED: DUF246 domain-containing prot | 0.804 | 0.807 | 0.736 | 0.0 | |
| 449483683 | 595 | PREDICTED: DUF246 domain-containing prot | 0.939 | 1.0 | 0.630 | 0.0 | |
| 297827349 | 636 | hypothetical protein ARALYDRAFT_482804 [ | 0.780 | 0.776 | 0.733 | 0.0 | |
| 449440287 | 624 | PREDICTED: DUF246 domain-containing prot | 0.818 | 0.830 | 0.699 | 0.0 | |
| 297820144 | 637 | hypothetical protein ARALYDRAFT_906813 [ | 0.911 | 0.905 | 0.651 | 0.0 | |
| 15224418 | 638 | O-fucosyltransferase-like protein [Arabi | 0.780 | 0.774 | 0.737 | 0.0 | |
| 15232417 | 638 | O-fucosyltransferase family protein [Ara | 0.911 | 0.904 | 0.648 | 0.0 |
| >gi|359481698|ref|XP_002277149.2| PREDICTED: DUF246 domain-containing protein At1g04910 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/640 (65%), Positives = 495/640 (77%), Gaps = 51/640 (7%)
Query: 1 MSSGAALNSSNNDDDNSNSTTGGNLSVQKPTRRRIADFIDHVDKLPNIPSDYSYYISDEE 60
MSSG A NS N + TT TRRR+AD ID ++ S SD
Sbjct: 1 MSSGGA-NSCNGSPRLAGPTT---------TRRRVADMID---------AERSSNFSDVS 41
Query: 61 ESNSINNANNSSSFNGSFSGPHDHFHNHQGVRCHRALRRKLCAFLPDACL---------- 110
E N NN G H H +H +R + LRR++ F P+ L
Sbjct: 42 EEEDNPNGNN---------GDHHHHCHHPSIR-YWLLRRRIFFFAPETWLLKIENGCSWA 91
Query: 111 ---------GKNMVRKVMVVLMFMAVVSVFVKAPVLSNRFDVSSKSRVRDKGLVLARMFK 161
G++M R++ V L+ + SVFVK ++S+ + + K R+ GL++ + FK
Sbjct: 92 ATAVQWLRSGRHMGRRIFVGLLLLVFFSVFVKFSLMSSHVEANGK---RENGLLIIQTFK 148
Query: 162 DDWVFSQRVVAEDNKQEPSMPIRVLEKISTPEIWMKPNSDNYYQCIARPKSQISNNKKTN 221
+DW +Q+VVAED + P+RVLEKI PEIWMKPNSDNY++CI RP+++I KTN
Sbjct: 149 EDWAMAQKVVAEDEASDAVKPLRVLEKIPIPEIWMKPNSDNYHKCITRPRNRIRTGSKTN 208
Query: 222 GYIVVHANGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTDPSDFKDIFDWRHFMN 281
GY++VHANGGLNQMRTGICDMVAVAKIMNATLVLP LDHESFWTD SDFKDIFDW+HF+
Sbjct: 209 GYLLVHANGGLNQMRTGICDMVAVAKIMNATLVLPSLDHESFWTDLSDFKDIFDWKHFIE 268
Query: 282 VLKDDVNIVEYLPTRYARKKPLLKAPVSWSKASYYRNEMVPLLKKHKVIKFSHTDSRLAN 341
VL DD+ IV LP +YA KPL KAPVSWSKASYYR EM+PLLK+HKVI+F+HTDSRLAN
Sbjct: 269 VLNDDIEIVPSLPQKYAAIKPLQKAPVSWSKASYYRGEMLPLLKRHKVIRFTHTDSRLAN 328
Query: 342 NGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPYVALHLRYEKDMLAFTGC 401
NGLA SIQRLRCRANYEALRY K+IE+LGKIL+DRL+ N+EPY+ALHLRYE+DMLAFTGC
Sbjct: 329 NGLAASIQRLRCRANYEALRYKKEIEELGKILLDRLKKNNEPYIALHLRYEQDMLAFTGC 388
Query: 402 SHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRLQGGCPMSPREAALFLKALGYPSTTTI 461
SHNLT EEAE LR+MRY+VKHWKEKEID +RRLQGGCPMSPREAALFLKA+GYPSTTTI
Sbjct: 389 SHNLTTEEAEKLRIMRYSVKHWKEKEIDSKERRLQGGCPMSPREAALFLKAMGYPSTTTI 448
Query: 462 YIVAGEIYGSSSMAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDVFV 521
YIVAGEIYG +SMAAFR E+PNVF+H+TLATEEELEPFKPYQNRLAALDY++ALESDVFV
Sbjct: 449 YIVAGEIYGRNSMAAFRSEYPNVFTHNTLATEEELEPFKPYQNRLAALDYILALESDVFV 508
Query: 522 HTYDGNMAKAVQGHRRFEGFRKSINPDKQNIVRLIDQLDEGAISWEEFSSEVKSLHSDRL 581
+TYDGNMAKAVQGHRRFEGFRK+INPD+QN VRLIDQLD GAISWE FS EVKSLH++RL
Sbjct: 509 YTYDGNMAKAVQGHRRFEGFRKTINPDRQNFVRLIDQLDGGAISWEMFSQEVKSLHTNRL 568
Query: 582 GGPYLRQPGESPRLEENFYANPFPGCICDRSQERVAGLKL 621
G PYLRQ GESPRLEENF+ANPFPGC+C++SQE+++ LKL
Sbjct: 569 GAPYLRQAGESPRLEENFFANPFPGCVCNKSQEQISSLKL 608
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740263|emb|CBI30445.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356494914|ref|XP_003516326.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|356506797|ref|XP_003522162.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|449483683|ref|XP_004156659.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297827349|ref|XP_002881557.1| hypothetical protein ARALYDRAFT_482804 [Arabidopsis lyrata subsp. lyrata] gi|297327396|gb|EFH57816.1| hypothetical protein ARALYDRAFT_482804 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|449440287|ref|XP_004137916.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|297820144|ref|XP_002877955.1| hypothetical protein ARALYDRAFT_906813 [Arabidopsis lyrata subsp. lyrata] gi|297323793|gb|EFH54214.1| hypothetical protein ARALYDRAFT_906813 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|15224418|ref|NP_181334.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] gi|13430694|gb|AAK25969.1|AF360259_1 putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gi|25054996|gb|AAN71964.1| putative axi 1 protein from Nicotiana tabacum [Arabidopsis thaliana] gi|330254380|gb|AEC09474.1| O-fucosyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|15232417|ref|NP_190978.1| O-fucosyltransferase family protein [Arabidopsis thaliana] gi|6822056|emb|CAB70984.1| putative protein [Arabidopsis thaliana] gi|332645667|gb|AEE79188.1| O-fucosyltransferase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 633 | ||||||
| TAIR|locus:2065563 | 638 | AT2G37980 [Arabidopsis thalian | 0.821 | 0.815 | 0.702 | 3.2e-207 | |
| TAIR|locus:2080285 | 638 | AT3G54100 [Arabidopsis thalian | 0.857 | 0.851 | 0.679 | 1e-203 | |
| TAIR|locus:2150129 | 631 | FRB1 "FRIABLE 1" [Arabidopsis | 0.728 | 0.730 | 0.691 | 9.3e-178 | |
| TAIR|locus:2157096 | 652 | AT5G35570 [Arabidopsis thalian | 0.665 | 0.645 | 0.641 | 2.7e-155 | |
| TAIR|locus:2009467 | 565 | AT1G22460 [Arabidopsis thalian | 0.665 | 0.745 | 0.479 | 7.2e-107 | |
| TAIR|locus:2014869 | 499 | AT1G14020 [Arabidopsis thalian | 0.619 | 0.785 | 0.491 | 1.1e-103 | |
| TAIR|locus:2143181 | 508 | AT5G15740 [Arabidopsis thalian | 0.619 | 0.771 | 0.507 | 1.4e-103 | |
| TAIR|locus:2076552 | 512 | AT3G02250 [Arabidopsis thalian | 0.625 | 0.773 | 0.503 | 2.3e-103 | |
| TAIR|locus:2174754 | 522 | AT5G64600 [Arabidopsis thalian | 0.687 | 0.833 | 0.462 | 3e-101 | |
| TAIR|locus:2056981 | 508 | AT2G03280 [Arabidopsis thalian | 0.571 | 0.712 | 0.454 | 2.9e-97 |
| TAIR|locus:2065563 AT2G37980 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2004 (710.5 bits), Expect = 3.2e-207, P = 3.2e-207
Identities = 384/547 (70%), Positives = 448/547 (81%)
Query: 82 HDH-FHNHQGVRCHRALRRKLCAFLPDA-------------CLGKNMVRKVMVVLMFMAV 127
HDH +H+H +R + LR+ FL D C G+N+ R+++ +LM V
Sbjct: 85 HDHHYHHHPTIR-YFLLRKLRLPFLFDGVGSTAVVGQGWWLCSGRNVGRRILGLLMIFVV 143
Query: 128 VSVFVKAPVLSNRFDVSSKSRVRDKG-LVLARMFKDDWVFSQRVVAEDNKQEPSMPIRVL 186
VS+F++ ++S R V + RD LV+ R +DW +QR + E+ V+
Sbjct: 144 VSLFLRVSLMSGR--VVDHAHRRDLNELVVMRALHEDWSMAQRAMTENV---------VI 192
Query: 187 EKISTPEIWMKPNSDNYYQCIARPKSQISNNKKTNGYIVVHANGGLNQMRTGICDMVAVA 246
EK+ PEIW KP S NY QC +RPK++ +KTNGY++VHANGGLNQMRTGICDMVA A
Sbjct: 193 EKLPIPEIWQKPESGNYRQCASRPKNRSRLRRKTNGYLLVHANGGLNQMRTGICDMVAAA 252
Query: 247 KIMNATLVLPLLDHESFWTDPSDFKDIFDWRHFMNVLKDDVNIVEYLPTRYARKKPLLKA 306
KIMNATLVLPLLDHESFWTDPS FKDIFDWRHFMNVLKDDV+IVEYLP RYA +PLLKA
Sbjct: 253 KIMNATLVLPLLDHESFWTDPSTFKDIFDWRHFMNVLKDDVDIVEYLPPRYAAMRPLLKA 312
Query: 307 PVSWSKASYYRNEMVPLLKKHKVIKFSHTDSRLANNGLAGSIQRLRCRANYEALRYSKDI 366
PVSWSKASYYR+EM+PLLKKHKVIKF+HTDSRLANNGL SIQRLRCRANY+AL YSK+I
Sbjct: 313 PVSWSKASYYRSEMLPLLKKHKVIKFTHTDSRLANNGLPPSIQRLRCRANYQALGYSKEI 372
Query: 367 EDLGKILVDRLRNNSEPYVALHLRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEK 426
ED GK+LV+RLRNNSEP++ALHLRYEKDMLAFTGCSHNLTA EAE+LR+MRYNVKHWKEK
Sbjct: 373 EDFGKVLVNRLRNNSEPFIALHLRYEKDMLAFTGCSHNLTAGEAEELRIMRYNVKHWKEK 432
Query: 427 EIDGIKRRLQGGCPMSPREAALFLKALGYPSTTTIYIVAGEIYGSSSMAAFREEFPNVFS 486
EID +RR+QGGCPMSPREAA+FLKA+GYPS+TT+YIVAGEIYG +SM AFREE+PNVF+
Sbjct: 433 EIDSRERRIQGGCPMSPREAAIFLKAMGYPSSTTVYIVAGEIYGGNSMDAFREEYPNVFA 492
Query: 487 HSTLATEEELEPFKPYQNRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEGFRKSIN 546
HS LATEEELEPFKPYQNRLAALDY+VALESDVFV+TYDGNMAKAVQGHRRFEGF+K+IN
Sbjct: 493 HSYLATEEELEPFKPYQNRLAALDYIVALESDVFVYTYDGNMAKAVQGHRRFEGFKKTIN 552
Query: 547 PDKQNIVRLIDQLDEGAISWEEFSSEVKSLHSDRLGGPYLRQPGESPRLEENFYANPFPG 606
PD+ N VRLID LDEG +SW+EFSSEVK LH++R+G PY R PGE PRLEENFYANP P
Sbjct: 553 PDRLNFVRLIDHLDEGVMSWDEFSSEVKRLHNNRIGAPYARLPGEFPRLEENFYANPQPD 612
Query: 607 CICDRSQ 613
CIC++SQ
Sbjct: 613 CICNKSQ 619
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| TAIR|locus:2080285 AT3G54100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2150129 FRB1 "FRIABLE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2157096 AT5G35570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2009467 AT1G22460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014869 AT1G14020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2143181 AT5G15740 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076552 AT3G02250 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2174754 AT5G64600 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2056981 AT2G03280 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 633 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-158 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-126 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 6e-12 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 455 bits (1173), Expect = e-158
Identities = 169/325 (52%), Positives = 208/325 (64%), Gaps = 38/325 (11%)
Query: 223 YIVVHANGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTDPSDFKDIFDWRHFMNV 282
Y++V ANGGLNQ R+ ICD VAVA+++NATLVLP LD S W D S F DI+D HF+
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 283 LKDDVNIVEYLPTRYARKKPLL--KAPVSWSKASYYRNEMVPLLKKHKVIKFSHTDSRLA 340
LKDDV +V+ LP A KKP + K S S SYY E++PLLKKH VI+ + DSRLA
Sbjct: 61 LKDDVRVVKKLPEELASKKPEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPFDSRLA 120
Query: 341 NNGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPYVALHLRYEKDMLAFTG 400
N+ L IQRLRCR N+ ALR+ +IE+LG LVDRLR P++ALHLR+EKDMLAF+G
Sbjct: 121 NDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGGPFLALHLRFEKDMLAFSG 180
Query: 401 CSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRLQGGCPMSPREAALFLKALGYPSTTT 460
C G CP++P E L L+ALG+P +T
Sbjct: 181 C-----------------------------------GKCPLTPEEVGLLLRALGFPRSTR 205
Query: 461 IYIVAGEIY-GSSSMAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDV 519
IY+ AGEIY G + R FPN+++ TLAT EEL PF + +RLAALDY+V LESDV
Sbjct: 206 IYLAAGEIYGGERRLDPLRSIFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDV 265
Query: 520 FVHTYDGNMAKAVQGHRRFEGFRKS 544
FV TY GN AKAV GHRR+ G RK+
Sbjct: 266 FVPTYGGNFAKAVAGHRRYLGHRKT 290
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 633 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 97.82 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 97.24 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-55 Score=445.36 Aligned_cols=296 Identities=36% Similarity=0.646 Sum_probs=207.7
Q ss_pred eCCChhhHHHHHHHHHHHHHHhcceEeecccCCCCccCCCCC-----CcccccHHHHHHHccccceeeccCchhhhccC-
Q 006724 228 ANGGLNQMRTGICDMVAVAKIMNATLVLPLLDHESFWTDPSD-----FKDIFDWRHFMNVLKDDVNIVEYLPTRYARKK- 301 (633)
Q Consensus 228 ~nGGLNQqR~~IcDAVaVARiLNATLVlP~L~~~S~WkD~S~-----F~DIFD~dhFI~sL~~dVrIVk~LP~~l~~~~- 301 (633)
+.||+||||.++++||++|++||+|||||.+.....|++.+. |+++||+++|++.++.+|.+.+.+|.......
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 889999999999999999999999999999999999999887 99999999999999999999999886554321
Q ss_pred ------------------------------CCccCCCC-CCCchhhhhhcccccccc------ceEEEecCCcccccCCC
Q 006724 302 ------------------------------PLLKAPVS-WSKASYYRNEMVPLLKKH------KVIKFSHTDSRLANNGL 344 (633)
Q Consensus 302 ------------------------------p~~k~p~~-ws~~~yY~~~VlP~L~k~------~VI~l~~fd~RLa~d~l 344 (633)
+....+.. |+.+.+|.++++|.+.++ +|+.|.++...+..+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 11112222 677788888899999886 99999999999998888
Q ss_pred CcchhhhhchhcccccccchhHHHHHHHHHHHHHhCCCCeEEEecccchhhhhhhcCCCCCCHHHHHHHHHHhhhccccc
Q 006724 345 AGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPYVALHLRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWK 424 (633)
Q Consensus 345 P~diQrLRCrvnf~ALrF~~~I~eLg~kLV~RMR~~~gpYIALHLR~EkDMLAfsgC~~g~~~~E~~eL~~~R~~~~~Wk 424 (633)
+.++|| +|+|+++|+++|+++|++|...+++|||+|||+|+|| +++|.+++ +...|+.+|. |.
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~~~yiavHlR~~~D~--~~~C~~~~---~~~~~~~~~~----~~ 228 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGGGPYIAVHLRRGKDW--FSACEFKG---ERHLLASPRC----WG 228 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH----SSEEEEEE--SHHH--HHHHCT-T-------TTTHHH----H-
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhcccCceEEEeecccCch--HhhcccCC---chHHHHHhHh----hc
Confidence 888887 8999999999999999999955799999999999999 88899954 7777877774 34
Q ss_pred ccccchHhhhhCCCCCCCHHHHHHHHHHhCCCCCcEEEEEeccccCCCc-hhhHHHhCCcccccccCCChhhccccCCch
Q 006724 425 EKEIDGIKRRLQGGCPMSPREAALFLKALGYPSTTTIYIVAGEIYGSSS-MAAFREEFPNVFSHSTLATEEELEPFKPYQ 503 (633)
Q Consensus 425 ~k~i~~~e~R~~G~CPLTPeEvgl~LraLGf~~~T~IYLAsGeiyGg~s-L~pLk~~FPnl~TKetLas~eEL~pF~~~s 503 (633)
.+.+.+.+.|..+.||++|++++.+++++|+.+.|.||||++++|||.+ |.+|++.||++++|+++.+.+|+++|.+
T Consensus 229 ~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (351)
T PF10250_consen 229 KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIYGGERRLDPLKNMFPNVVTKDDLLSHEELEPLND-- 306 (351)
T ss_dssp GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS-----------HHHHHHHHGGGT--EE--S-------
T ss_pred cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCcccccchhHHHHHHHhhhhEeccccCCHHHhhhccc--
Confidence 5556677788999999999999999999999999999999999999988 9999999999999999999999999976
Q ss_pred hhhhhhhhhhhccCCeeeecCCCcHHHHHhhhhhccCCc
Q 006724 504 NRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEGFR 542 (633)
Q Consensus 504 s~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 542 (633)
+++|+||++||++||+||+|..++|+.+|+++|+|.|+.
T Consensus 307 ~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~~g~~ 345 (351)
T PF10250_consen 307 DQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHYRGKP 345 (351)
T ss_dssp S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHHSSSS
T ss_pred cchhHHHHHHHhcCCEEEecCcchhHHHhhcccCcCCCC
Confidence 899999999999999999999888999999999999964
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 633 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-13 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.6 bits (177), Expect = 2e-13
Identities = 87/629 (13%), Positives = 184/629 (29%), Gaps = 166/629 (26%)
Query: 82 HDHFH-----NHQGVRCHRALRRKLCAFLPDACLGKNMVRKVMVVLMFMAVVSVFVKAPV 136
H H H + L AF+ + V+ + ++ + + +
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDN--FDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 137 LSNR----FDVSSKSRVRDKGLVLARMFKDD-------WVFSQRVVAEDNKQEPSMPIRV 185
+ F + K + + F ++ ++ S + + +Q PSM R+
Sbjct: 60 AVSGTLRLFWT-----LLSKQEEMVQKFVEEVLRINYKFLMSP--IKTEQRQ-PSMMTRM 111
Query: 186 LEK-----ISTPEIWMKPNSDNYYQCIARPK--SQISN---NKKTNGYIVVHANGGLNQM 235
+ + +++ K N ++R + ++ + +++ G
Sbjct: 112 YIEQRDRLYNDNQVFAKYN-------VSRLQPYLKLRQALLELRPAKNVLIDGVLG---- 160
Query: 236 RTGICDMVAVAKIMNATLVLPLLDHESFWTDPSDFKDIFDWRHFMNVLKDDVNIVEYLPT 295
+G K + L + DFK IF W + N + ++E L
Sbjct: 161 -SG--------K---TWVALDVCLSYKV-QCKMDFK-IF-WLNLKNCNSPE-TVLEMLQK 204
Query: 296 RYARKKPLLKAPVSWSKASYYRNEMVPLLKKHKVIKFSHTDSRLANNGLAGSIQRLRCRA 355
+ P + S R + + + + + L + L
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL--------V--LL--- 251
Query: 356 NYEALRYSKDIE--DLG-KILV--------DRLRNNSEPYV-------ALHLRYEKDMLA 397
N ++ +K +L KIL+ D L + ++ L K +L
Sbjct: 252 N---VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 398 -FTGCSHNLTAEEA------------EDLRVMRYNVKHWKEKEIDGIKRRLQGGCPMS-- 442
+ C E E +R +WK D + ++ S
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE----SSLN 364
Query: 443 ---PREAALFLKALG-YPSTTTIYIVAGEIYGSSSMAAFREEFPNVFSHSTLATEEELEP 498
P E L +P + I + + + + N +L E++ +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLV-EKQPKE 423
Query: 499 FKPYQNRLAALDYLVALESDVFVH-----------TYDGN------------------MA 529
+ L+ V LE++ +H T+D + +
Sbjct: 424 STISIPSIY-LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 530 KAVQGHRRFEGFRKSINPDKQNIVRLIDQ-LDEGAISWEEFSSEVKSLHSDRLGGPYLRQ 588
R FR + D R ++Q + + +W S + +L + PY+
Sbjct: 483 NIEHPER-MTLFRM-VFLD----FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
Query: 589 PGESPRLE------ENFYANPFPGCICDR 611
P+ E +F IC +
Sbjct: 537 --NDPKYERLVNAILDFLPKIEENLICSK 563
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 633 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.57 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.29 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 97.82 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 97.82 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=150.70 Aligned_cols=293 Identities=15% Similarity=0.227 Sum_probs=165.0
Q ss_pred CCCCcEEEEEeC-C-ChhhHHHHHHHHHHHHHHhcce----EeecccCCCCccCCC------CCCcccccHHHHHHHccc
Q 006724 218 KKTNGYIVVHAN-G-GLNQMRTGICDMVAVAKIMNAT----LVLPLLDHESFWTDP------SDFKDIFDWRHFMNVLKD 285 (633)
Q Consensus 218 ~~snGYL~V~~n-G-GLNQqR~~IcDAVaVARiLNAT----LVlP~L~~~S~WkD~------S~F~DIFD~dhFI~sL~~ 285 (633)
...++||+-..+ | |.|+||...-.|.++|+.||.| ||||-...---|+-. -.|+++||++++. .
T Consensus 19 ~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~----~ 94 (408)
T 4ap5_A 19 ASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN----K 94 (408)
T ss_dssp -CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----T
T ss_pred ccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----h
Confidence 467899998864 5 8999999999999999999999 999966432235442 3799999998754 4
Q ss_pred cceeeccCchhhhc-cCC---------------------C--------c-cCCCCCCCchhhh----hhccccccccceE
Q 006724 286 DVNIVEYLPTRYAR-KKP---------------------L--------L-KAPVSWSKASYYR----NEMVPLLKKHKVI 330 (633)
Q Consensus 286 dVrIVk~LP~~l~~-~~p---------------------~--------~-k~p~~ws~~~yY~----~~VlP~L~k~~VI 330 (633)
.|+|+.- +++.. ..+ . . ..+....+..++. +..........-+
T Consensus 95 ~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~ 172 (408)
T 4ap5_A 95 NIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCL 172 (408)
T ss_dssp TSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEE
T ss_pred hCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeE
Confidence 5555521 11100 000 0 0 0000000000000 0000000111111
Q ss_pred EEecCCc----------------------ccccCCCCcchhhhhchhcccccccchhHHHHHHHHHHHHHhCCCCeEEEe
Q 006724 331 KFSHTDS----------------------RLANNGLAGSIQRLRCRANYEALRYSKDIEDLGKILVDRLRNNSEPYVALH 388 (633)
Q Consensus 331 ~l~~fd~----------------------RLa~d~lP~diQrLRCrvnf~ALrF~~~I~eLg~kLV~RMR~~~gpYIALH 388 (633)
.+.+..+ .|+...-..+...+ -..|+|.+.|.+.|+..++..- .++|+++|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~-----~r~l~~s~~l~~~a~~fi~~~L--~~~~~~~h 245 (408)
T 4ap5_A 173 SVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDT-----RRSMVFARHLREVGDEFRSRHL--NSTDDADR 245 (408)
T ss_dssp EECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHH-----HHTCCBCHHHHHHHHHHHHHHH--CCCTTTTT
T ss_pred EEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhH-----HHHhhhhHHHHHHHHHHHHHHh--Ccccceee
Confidence 1211111 11111000011111 1369999999999999987665 35888888
Q ss_pred cccchhhhhhhcCCCCCCHHHHHHHHHHhhhcccccccccchHhhhh-CCCCCCCHHHHHHHHHHhCCCCCcEEEEEecc
Q 006724 389 LRYEKDMLAFTGCSHNLTAEEAEDLRVMRYNVKHWKEKEIDGIKRRL-QGGCPMSPREAALFLKALGYPSTTTIYIVAGE 467 (633)
Q Consensus 389 LR~EkDMLAfsgC~~g~~~~E~~eL~~~R~~~~~Wk~k~i~~~e~R~-~G~CPLTPeEvgl~LraLGf~~~T~IYLAsGe 467 (633)
+|.+.|+... |....... .--+...||+..+- ... ...||-.+.-+..+.+.+-=-+-+.||||+=+
T Consensus 246 ~r~~~dw~~~--~~~~~~~~------~~~y~~~H~Rr~d~----~~~~~~~~ps~~~~~~~i~~~~~~~~~~~VyiATD~ 313 (408)
T 4ap5_A 246 IPFQEDWMKM--KVKLGSAL------GGPYLGVHLRRKDF----IWGHRQDVPSLEGAVRKIRSLMKTHRLDKVFVATDA 313 (408)
T ss_dssp CCCCSSGGGC--CCCTTCBC------CEEEEEEEECCTTT----TTTTCSSSCCHHHHHHHHHHHHHHHTCSCEEEEECC
T ss_pred cccchhHhhh--hccccccc------CCCccccccccccc----hhhhhccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 8888888764 43321100 00011123332210 011 12233333323333333332244579999864
Q ss_pred ccCCCc-hhhHHHhCCcccccccCCChhhccccCCchhhhhhhhhhhhccCCeeeecCCCcHHHHHhhhhhccCCc
Q 006724 468 IYGSSS-MAAFREEFPNVFSHSTLATEEELEPFKPYQNRLAALDYLVALESDVFVHTYDGNMAKAVQGHRRFEGFR 542 (633)
Q Consensus 468 iyGg~s-L~pLk~~FPnl~TKetLas~eEL~pF~~~ss~lAALDYiVcl~SDVFV~t~~GNfa~~V~GhR~y~G~~ 542 (633)
.+. +..|++.+|.++.-.. ..+++..+ .....|.||-+||.+||+||+|..++|+..|.-.|.+.|+.
T Consensus 314 ---~~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq~Ic~~a~~FiGt~~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 314 ---VRKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQWICAHARFFIGTSVSTFSFRIHEEREILGLD 382 (408)
T ss_dssp ---CHHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHHHHHHTEEEEEBCTTCHHHHHHHHHHHHHTBC
T ss_pred ---chhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHHHHHHhCCeeEeCCcCchhHHHHHHHHhcCCC
Confidence 244 7889999987764322 23444444 24467999999999999999999999999999999999986
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00