Citrus Sinensis ID: 006741

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630---
MTSLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQGVLYDYIRLEGPPKT
cccccEEEEEEcccEEEEEccEEEEEEEcccEEEEEEEEccEEcccccccccccccEEEEEEEcccccccEEEEcccEEEEEEEcccEEEEEEEEEEcccccccccccccEEEEEEEccccEEEEEEEEEccccccccccccEEEEEEEcccccccEEEEcccccccccccccccccccccccEEEEccccccccccEEEEEEEEEEEcccccEEEEEcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEcccccccccccccccccccccEEEEEcccccccccccHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEcccccccccccccEEEEEcccccccccEEcccccEEEEEEcccccEEEccEEcEEEEEEEEEccEEEEEEEEEEEEEEcccEEEEccEEEEccccccccEEEcccccccccccccccccccccccccccccHHHccccHHHccccccccccEEEEccccccccccEEEEEEEcccccccccEEEEEEEEccccccccEEEEEEEEccccccEEEEEcccccccccccccccccccEEEEcEEEEEEEEEEEEEEcccEEEEccEEEEEEEcccccccEEEEEEEEEEccccc
cccccEEEEEEcccEEEEEccEEEEEEEccccEEEEEEEcccccccccccccccccEEEEEEccccccccEEEEEcEEEEEEEEcccEEEEEEEEccccccccccccccEEEEEEEEcccccEEEEEEEcccccccccccccEEEEEEcccccccEEEEccccccccccccccccccEEEcccEEEEcccccccccccEcccEEEccccccccEEEEEEccccEEEEEEccccccccccccHHHcHccccccEEEEEEcccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccccccccccccEEEEEccccccEEEEEcccEEEEEEEccccEEEEccccccEEEEEEEEcccEEEEEEccEEEEEcccEEEcccEEEEccccccEEEEEEcccccccccccccccccHHcHHHccccHHHHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEEEccccccccccEEEEEEcccccccccEEEEEEEEHHccccccEEEEccccccccccccccccccEEEEccEEcEEEEEEEEEcHHHHEccccEEEEEEccccccccEEEEEEEEEcccccc
mtslgvqlntkHRRLVVMDNGLVQvtlsnpegevigiKYNEIDNVLEtqneednrgywdvvwyepekqgsydKLIATDFKVIMQDENQVEVSFTRTwnislrgslaplnvdkryimrrgvsGFYFYAIMErkegwpdvdmDQIRTVFKLQQNKFHFMAisndrqrimpmpedratgqplaypeavlltdpinpdlrgevddkyqyssedkdirvhgwissdppvgfwmitpsdefrsggpnkqdltshvgpvVLSMFTsthyagkeintefrngepwkkvfGPALVYLNsvsseekplnLWEDAKRQMMVEVrkwpynfpesvdfpkrnqrggvfgqlrVHDRYISNRLMWADSAYvglaapggvgswerdskgyqfwtkankrgyfsiknvrqgdynlyawipgivgdykysanitvragsninlgvlvyepprkgptlweigipdrsaaeffvpdpyptlanqlytnhpekfrqYGLWERYVDLyrnddleytvgdsyhakdWFFAHVtrdvgnrtykptTWRIIFELKHLNNNGHYTLQLALASatdsdlhvrfnnpnadpphfatgtigkdnaiarHGIHGLyrlysidvpsvllnrgrntiyltqsrsrspfqgvLYDYIrlegppkt
mtslgvqlntkhrrlvvmdNGLVQVTlsnpegevigiKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVsftrtwnislrgslaplnvdkryimrRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKyqyssedkdirvhgwissdppvGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEintefrngepWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNfpesvdfpkrnqrggvfgqLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTiyltqsrsrspfqgvlydyirlegppkt
MTSLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQGVLYDYIRLEGPPKT
*********TKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAIS*******************AYPEAVLLTDPIN**********YQY***DKDIRVHGWISSDPPVGFWMITP***************SHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNP***PPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQGVLYDYIRL******
****GVQ*NTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHF*********AIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQGVLYDYI*LEGP***
MTSLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQGVLYDYIRLEGPPKT
***LGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQGVLYDYIRLEG****
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MTSLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRSPFQGVLYDYIRLEGPPKT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query633 2.2.26 [Sep-21-2011]
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.840 0.920 0.248 1e-32
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.921 0.883 0.217 8e-18
Q4WR79658 Probable rhamnogalacturon yes no 0.747 0.718 0.236 6e-17
B0XPA2658 Probable rhamnogalacturon N/A no 0.747 0.718 0.236 6e-17
Q0C7K7660 Probable rhamnogalacturon N/A no 0.759 0.728 0.236 7e-17
B8N5T6663 Probable rhamnogalacturon N/A no 0.755 0.720 0.226 2e-16
A5ABH4706 Probable rhamnogalacturon yes no 0.729 0.654 0.232 7e-16
A1D144658 Probable rhamnogalacturon N/A no 0.753 0.724 0.236 3e-15
Q5B5P1 1041 Probable rhamnogalacturon no no 0.611 0.371 0.246 2e-08
Q2U5P7695 Probable rhamnogalacturon no no 0.470 0.428 0.230 3e-05
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function desciption
 Score =  141 bits (356), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 155/624 (24%), Positives = 255/624 (40%), Gaps = 92/624 (14%)

Query: 17  VMDNGLVQVTLS--NPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKL 74
            +DNGL++V         EV     N I  +     + D    + + +Y     G  ++ 
Sbjct: 39  TLDNGLLKVRFGADGSAKEVWKGGTNLISRLSGAARDPDKNRSFYLDYYS----GGVNEF 94

Query: 75  IATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEG 134
           +    +VI Q  +QV +++    N  LR       ++   IM R VSG Y Y +      
Sbjct: 95  VPERLEVIKQTPDQVHLAYIDDQNGKLR-------LEYHLIMTRDVSGLYSYVVAANTGS 147

Query: 135 WPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPINPD 194
            P V + ++R V++    +     + N  +R  P+  D     P    E   L D     
Sbjct: 148 AP-VTVSELRNVYRFDATRLD--TLFNSIRRGTPLLYDELEQLPKVQDETWRLPD----- 199

Query: 195 LRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPVVL 254
             G V  KY ++   ++ R  G + +    G WM+  S E+ SG   KQ+L  H   ++L
Sbjct: 200 --GSVYSKYDFAGYQRESRYWGVMGNG--YGAWMVPASGEYYSGDALKQELLVHQDAIIL 255

Query: 255 SMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRK 314
           +  T +H+   ++  +      ++K++GP L+Y+N  +  E    L  D  R+   E   
Sbjct: 256 NYLTGSHFGTPDMVAQ----PGFEKLYGPWLLYINQGNDRE----LVADVSRRAEHERAS 307

Query: 315 WPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKG 374
           WPY + +   +P+  QR  V G+LR             ++ +  +       +++  + G
Sbjct: 308 WPYRWLDDARYPR--QRATVSGRLRT------------EAPHATVVLNSSAENFDIQTTG 353

Query: 375 YQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRA-GSNINLGVLVYEP 433
           Y F  + N+ G FS+ NV  G+Y L A+  G        A  TVR  G    LG +    
Sbjct: 354 YLFSARTNRDGRFSLSNVPPGEYRLSAYADGGT-QIGLLAQQTVRVEGKKTRLGQIDARQ 412

Query: 434 PRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLE 493
           P   P  W IG  DR A EF   D             P ++R    W+  V      DL 
Sbjct: 413 P--APLAWAIGQADRRADEFRFGD------------KPRQYR----WQTEVPA----DLT 450

Query: 494 YTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSDL 553
           + +G S   KDW++A           +P +W I+F  +       YTL +A+A+A+++ +
Sbjct: 451 FEIGKSRERKDWYYAQT---------QPGSWHILFNTR--TPEQPYTLNIAIAAASNNGM 499

Query: 554 HVRFNNPN----ADPPHFATGTIGKDNAIARHGIH-GLYRLYSIDVPSVLLNRGRNTIYL 608
               ++P      +     T     D +I R  +  G Y    I +P+  L +G N I L
Sbjct: 500 TTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGRYHEAHIPLPAGALQQGGNRITL 559

Query: 609 TQSRSRSPFQGVLYDYIRLEGPPK 632
                      V+YD I L   P+
Sbjct: 560 ELLGGM-----VMYDAITLTETPQ 578
Degrades the rhamnogalacturonan I (RG-I) backbone of pectin. Is required for the full virulence of E.chrysanthemi strain 3937 as it is involved in rotting of plant tissue.
Dickeya dadantii (strain 3937) (taxid: 198628)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query633
224088661674 predicted protein [Populus trichocarpa] 0.996 0.936 0.710 0.0
255572623621 lyase, putative [Ricinus communis] gi|22 0.977 0.996 0.694 0.0
255572591676 lyase, putative [Ricinus communis] gi|22 0.993 0.930 0.679 0.0
224127138625 predicted protein [Populus trichocarpa] 0.976 0.988 0.691 0.0
15227253677 rhamnogalacturonate lyase-like protein [ 0.992 0.927 0.659 0.0
46518475677 At2g22620 [Arabidopsis thaliana] gi|5197 0.995 0.930 0.652 0.0
297825141681 hypothetical protein ARALYDRAFT_481121 [ 0.992 0.922 0.649 0.0
449431928616 PREDICTED: probable rhamnogalacturonate 0.973 1.0 0.636 0.0
356526739685 PREDICTED: LOW QUALITY PROTEIN: probable 0.993 0.918 0.616 0.0
357466849651 Rhamnogalacturonate lyase [Medicago trun 0.998 0.970 0.601 0.0
>gi|224088661|ref|XP_002308510.1| predicted protein [Populus trichocarpa] gi|222854486|gb|EEE92033.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  949 bits (2453), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/633 (71%), Positives = 527/633 (83%), Gaps = 2/633 (0%)

Query: 2   TSLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVV 61
           ++LGVQLN K+R+ VV+DNGLV+VT S+P+G+V GIKY  IDNVLE  N+EDNRGYWDVV
Sbjct: 43  SALGVQLNIKNRQRVVIDNGLVEVTFSSPDGDVTGIKYKGIDNVLEIGNDEDNRGYWDVV 102

Query: 62  WYEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVS 121
           W +P     +DKL+ATDFKVIM+DENQVEVSFT+TW++S+  S  PLNVDKRYI+RRG S
Sbjct: 103 WNKPGDPIIFDKLVATDFKVIMEDENQVEVSFTKTWDLSMGNSTVPLNVDKRYIVRRGQS 162

Query: 122 GFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAY 181
           G Y Y I+ER EGWPDVDMDQIR VFKLQ++KFH+MA+S+ R+R MPMPEDR +GQPLAY
Sbjct: 163 GLYLYTILERLEGWPDVDMDQIRVVFKLQKDKFHYMALSDSRKRTMPMPEDRVSGQPLAY 222

Query: 182 PEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPN 241
           PEAVLLT PIN  LRGEVDDKYQYS EDKD +VHGW + DPPVGFWMITPS+EFR GGPN
Sbjct: 223 PEAVLLTKPINLKLRGEVDDKYQYSCEDKDNKVHGWTAEDPPVGFWMITPSNEFRVGGPN 282

Query: 242 KQDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLW 301
           KQDLTSHVGPVVL+MFTSTHYAGK++NT +RNGEPWKKV GP  VYLNS+S +E    LW
Sbjct: 283 KQDLTSHVGPVVLNMFTSTHYAGKDLNTAYRNGEPWKKVLGPVFVYLNSISPKENSSMLW 342

Query: 302 EDAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAA 361
           EDAK QM +EV +WPY+FP+S DFP  +QRG V GQL V DRY++ RL +A SAYVGLAA
Sbjct: 343 EDAKEQMSIEVNRWPYDFPQSEDFPSSDQRGAVTGQLLVRDRYVNQRLTYASSAYVGLAA 402

Query: 362 PGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAG 421
           PG VGSW+ +SKGYQFW +A++ G+F IKNVR G+Y+LYAW+PG++GDYKY ANIT+  G
Sbjct: 403 PGDVGSWQTESKGYQFWIRADRHGHFVIKNVRAGNYSLYAWVPGVIGDYKYGANITINPG 462

Query: 422 SNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHP-EKFRQYGLW 480
           S I  G L+YEPPR GPTLW+IGIPDR+AAEF+VPD YPTL N LYT  P EKFRQYGLW
Sbjct: 463 SRIRFGHLIYEPPRNGPTLWDIGIPDRTAAEFYVPDGYPTLMNTLYTREPAEKFRQYGLW 522

Query: 481 ERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYT 540
            RY DLY NDDL YT+G S + KDWFFAHVTRD GN+TY PTTW+IIFEL+++N N +YT
Sbjct: 523 NRYSDLYPNDDLVYTIGIS-NVKDWFFAHVTRDAGNKTYDPTTWQIIFELENVNRNENYT 581

Query: 541 LQLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLN 600
           L+LALASAT S++ VRFNNP++D P F TG +GKDNAIARHGIHGLY LY IDVP   L 
Sbjct: 582 LRLALASATASEIQVRFNNPSSDRPLFTTGAVGKDNAIARHGIHGLYWLYGIDVPGSQLV 641

Query: 601 RGRNTIYLTQSRSRSPFQGVLYDYIRLEGPPKT 633
            G+NTIYLTQ+RS  PFQGV+YDYIR EGP  T
Sbjct: 642 EGKNTIYLTQARSDGPFQGVMYDYIRFEGPRGT 674

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572623|ref|XP_002527245.1| lyase, putative [Ricinus communis] gi|223533421|gb|EEF35171.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|255572591|ref|XP_002527229.1| lyase, putative [Ricinus communis] gi|223533405|gb|EEF35155.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224127138|ref|XP_002319997.1| predicted protein [Populus trichocarpa] gi|222860770|gb|EEE98312.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15227253|ref|NP_179847.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] gi|4314359|gb|AAD15570.1| unknown protein [Arabidopsis thaliana] gi|330252235|gb|AEC07329.1| rhamnogalacturonate lyase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|46518475|gb|AAS99719.1| At2g22620 [Arabidopsis thaliana] gi|51970438|dbj|BAD43911.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297825141|ref|XP_002880453.1| hypothetical protein ARALYDRAFT_481121 [Arabidopsis lyrata subsp. lyrata] gi|297326292|gb|EFH56712.1| hypothetical protein ARALYDRAFT_481121 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449431928|ref|XP_004133752.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Cucumis sativus] gi|449478079|ref|XP_004155216.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356526739|ref|XP_003531974.1| PREDICTED: LOW QUALITY PROTEIN: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|357466849|ref|XP_003603709.1| Rhamnogalacturonate lyase [Medicago truncatula] gi|355492757|gb|AES73960.1| Rhamnogalacturonate lyase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query633
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.992 0.927 0.659 3.1e-234
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.993 0.931 0.573 5.8e-208
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.966 0.991 0.570 1e-201
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.958 0.895 0.595 2.2e-199
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.966 0.969 0.577 1.6e-198
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.987 0.967 0.544 1.8e-197
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.971 0.922 0.544 3.6e-192
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.293 0.75 0.598 6.8e-69
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.816 0.783 0.243 7.4e-23
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.816 0.783 0.243 7.4e-23
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2259 (800.3 bits), Expect = 3.1e-234, P = 3.1e-234
 Identities = 417/632 (65%), Positives = 494/632 (78%)

Query:     3 SLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVW 62
             +L VQL       VV+DNG+VQVT SNPEG + GIKY+ IDNVL+  ++ D+RGYWDVVW
Sbjct:    49 ALTVQLRRVGHDTVVVDNGIVQVTFSNPEGLITGIKYHGIDNVLD--DKIDDRGYWDVVW 106

Query:    63 YEPEKQGSYDKLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSG 122
             YEPEK+   DKL  T F++I Q+E Q+E+SFTRTW IS RGSL PLNVDKRYI+R GVSG
Sbjct:   107 YEPEKKQKTDKLEGTKFEIITQNEEQIEISFTRTWTISRRGSLVPLNVDKRYIIRSGVSG 166

Query:   123 FYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYP 182
              Y Y I+ER EGWPDVDMDQIR VFKL   KF FMAIS+DRQR MP   DR   + LAY 
Sbjct:   167 LYMYGILERLEGWPDVDMDQIRIVFKLNPKKFDFMAISDDRQRSMPSMADRENSKSLAYK 226

Query:   183 EAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNK 242
             EAVLLT+P NP  +GEVDDKY YS EDKD  VHGWISSDPPVGFWMITPSDEFR GGP K
Sbjct:   227 EAVLLTNPSNPMFKGEVDDKYMYSMEDKDNNVHGWISSDPPVGFWMITPSDEFRLGGPIK 286

Query:   243 QDLTSHVGPVVLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWE 302
             QDLTSH GP+ LSMFTSTHYAGKE+  ++RNGEPWKKVFGP L YLNSVS ++  L LW 
Sbjct:   287 QDLTSHAGPITLSMFTSTHYAGKEMRMDYRNGEPWKKVFGPVLAYLNSVSPKDSTLRLWR 346

Query:   303 DAKRQMMVEVRKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAP 362
             DAKRQM  EV+ WPY+F  S D+P R+QRG + GQ  + D Y+S   ++   A+VGLA  
Sbjct:   347 DAKRQMAAEVKSWPYDFITSEDYPLRHQRGTLEGQFLIKDSYVSRLKIYGKFAFVGLAPI 406

Query:   363 GGVGSWERDSKGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGS 422
             G  GSW+ +SKGYQFWTKA++RG F I+NVR G+Y+LYAW  G +GDYKY  NIT+  GS
Sbjct:   407 GEAGSWQTESKGYQFWTKADRRGRFIIENVRAGNYSLYAWGSGFIGDYKYEQNITITPGS 466

Query:   423 NINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNH-PEKFRQYGLWE 481
              +N+G LVYEPPR GPTLWEIG+PDR+A EF++PDPYPTL N+LY N   ++FRQYGLW+
Sbjct:   467 EMNVGPLVYEPPRNGPTLWEIGVPDRTAGEFYIPDPYPTLMNKLYVNPLQDRFRQYGLWD 526

Query:   482 RYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTL 541
             RY DLY  +DL YT+G S +  DWFFAHV R+VGN TY+PTTW+IIF LK++N  G YTL
Sbjct:   527 RYADLYPQNDLVYTIGVSDYRSDWFFAHVARNVGNDTYQPTTWQIIFNLKNVNRIGRYTL 586

Query:   542 QLALASATDSDLHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNR 601
             ++ALASA DS+L +R N+P +D   F TG IGKDNAIARHGIHGLYRLYSIDV   LL+ 
Sbjct:   587 RIALASAADSELQIRINDPKSDAI-FTTGFIGKDNAIARHGIHGLYRLYSIDVAGNLLSV 645

Query:   602 GRNTIYLTQSRSRSPFQGVLYDYIRLEGPPKT 633
             G NTI+LTQ+RSR+PFQG++YDYIRLE P +T
Sbjct:   646 GDNTIFLTQTRSRTPFQGIMYDYIRLESPFRT 677
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query633
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 1e-90
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 4e-74
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 9e-44
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 5e-29
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information 
 Score =  279 bits (716), Expect = 1e-90
 Identities = 115/188 (61%), Positives = 141/188 (75%), Gaps = 3/188 (1%)

Query: 14  RLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDK 73
           R VV+DNG+VQVTLSNP G + GI+YN IDN+LE +++E NRGYWDVVW  P  +  +D 
Sbjct: 34  RHVVVDNGIVQVTLSNPGGAITGIRYNGIDNLLEARDKEKNRGYWDVVWNFPGVKSIFDV 93

Query: 74  LIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKE 133
           ++ T+F+VI QDE QVE+SF RTW+   R +  PLN+DKR IM RGVSGFY YAI E   
Sbjct: 94  IVGTEFEVITQDEEQVELSFIRTWD-PSRDNGVPLNIDKRLIMLRGVSGFYSYAIFEHLS 152

Query: 134 GWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDR--ATGQPLAYPEAVLLTDPI 191
           GWP V++ + R VFKL ++KFH+MAIS+DRQRIMP P+DR    G PLAYPEAVLL DP 
Sbjct: 153 GWPAVNLSETRLVFKLNKDKFHYMAISDDRQRIMPRPDDRDIPRGAPLAYPEAVLLVDPQ 212

Query: 192 NPDLRGEV 199
            P  RGEV
Sbjct: 213 EPQFRGEV 220

Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. Length = 220
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 633
PF06045203 Rhamnogal_lyase: Rhamnogalacturonate lyase family; 100.0
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 100.0
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.86
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.71
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.39
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 97.82
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 97.82
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 97.79
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.57
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.41
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.38
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.04
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.19
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.2
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 94.25
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 94.0
PRK15036137 hydroxyisourate hydrolase; Provisional 93.5
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 92.85
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 92.18
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 91.64
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 90.74
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 90.64
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 90.17
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 89.39
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 88.7
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 88.18
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 87.9
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 86.17
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 86.02
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 84.87
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 84.83
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 84.12
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 83.45
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 82.64
>PF06045 Rhamnogal_lyase: Rhamnogalacturonate lyase family; InterPro: IPR010325 Rhamnogalacturonate lyase degrades the rhamnogalacturonan I (RG-I) backbone of pectin [] Back     alignment and domain information 
Probab=100.00  E-value=8.6e-60  Score=461.99  Aligned_cols=198  Identities=64%  Similarity=1.112  Sum_probs=193.8

Q ss_pred             CCCCCeEEEEcCCEEEEEECCeEEEEEeCCceeEEEEEECCeeccccccCCCCcceeEEEEecCCCCCCcccccccceEE
Q 006741            1 MTSLGVQLNTKHRRLVVMDNGLVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFK   80 (633)
Q Consensus         1 ~~~~~v~l~~~g~~~~vidNg~l~~tv~k~~G~itsi~y~G~~nll~~~~~~~~~GY~d~~w~~~g~~~~~~~~~gt~~~   80 (633)
                      ++..+|+|++++++ |+||||+|+|||+||+|+||+|+|+|++|||+..+++.++||||++|+.+|..++|+++.||+|+
T Consensus         4 ~~~~~V~L~~~~~~-VvldNGiVqVtls~p~G~VtgIkYnGi~NLle~~n~e~nrGYwD~~W~~~G~~~~~~~~~gt~f~   82 (203)
T PF06045_consen    4 SSSSGVTLTVQGRQ-VVLDNGIVQVTLSKPGGIVTGIKYNGIDNLLEVANKENNRGYWDLVWNEPGSKGKFDRIKGTEFS   82 (203)
T ss_pred             ccCCCeEEEEcCCE-EEEECCEEEEEEcCCCceEEEEEECCEehhhcccCcccCCceEEEecccCCccccccccCCcEEE
Confidence            36789999999999 99999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             EEeecCCEEEEEEEEeeccccCCCccccceeEEEEEEcCcceeEEEEEeeccCCCCCCCCcceEEEEEeCCCCcceeeee
Q 006741           81 VIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAIS  160 (633)
Q Consensus        81 vi~~~~~~i~vs~~~~~~~s~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~  160 (633)
                      ||++++++|||||+++|+||++++.+||+||+||||++|+||||+|+|++|+++||+++|+|+|+||||++++|++|+++
T Consensus        83 Vi~~te~qVevSF~r~w~~s~~~~~~plnIDkryVm~rG~SGfY~YAI~e~~~~~Pa~~l~q~R~vfKl~~d~F~ymai~  162 (203)
T PF06045_consen   83 VIEQTEEQVEVSFSRTWDPSLDGKSVPLNIDKRYVMLRGSSGFYSYAIFEHPAGWPAFDLGQTRIVFKLNKDKFHYMAIS  162 (203)
T ss_pred             EEEcCCCeEEEEEEcccCcCCCCCcceeEeeEEEEEecCCceEEEEEEEecCCCCCCcccceeEEEEECCccccceEEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCCccc--CCCccccccceEEecCCCCCCCCcee
Q 006741          161 NDRQRIMPMPEDR--ATGQPLAYPEAVLLTDPINPDLRGEV  199 (633)
Q Consensus       161 d~r~~~mP~~~d~--~~g~~l~~~e~v~l~~~~~~~~~G~~  199 (633)
                      |+|||.||+|+|+  .+|++|+|+|||+|++|++|+|+|||
T Consensus       163 d~rqr~mP~~~D~~~~~~~~l~y~eav~l~~p~~~~~~gev  203 (203)
T PF06045_consen  163 DDRQRIMPSPDDRDPARGQPLAYPEAVLLVNPINPQFRGEV  203 (203)
T ss_pred             ccccccCCChHHccccCCCcccCchhhhcCCCCCccccccC
Confidence            9999999999999  58899999999999999999999986

This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query633
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-117
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  358 bits (921), Expect = e-117
 Identities = 93/621 (14%), Positives = 173/621 (27%), Gaps = 132/621 (21%)

Query: 16  VVMDNGLVQ---VTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYD 72
            V+D         T+S    ++  I +   +    +Q      G                
Sbjct: 11  YVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSG---------------- 54

Query: 73  KLIATDFKVIMQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERK 132
             + +      Q  + ++V+                 + +  ++  G    +        
Sbjct: 55  --LGSATVTATQSGDYIKVTCVTD------------TLTQYMVVHNGDPIIHMATY---- 96

Query: 133 EGWPDVDMDQIRTVFKLQQNKFHFMAISNDRQRIMPMPEDRATGQPLAYPEAVLLTDPIN 192
               +  + ++R + +L  +               P  E        A   A+  +D   
Sbjct: 97  -ITAEPSIGELRFIARLNSDLL-------------PNEEPFGDVSTTADGTAIEGSDVFL 142

Query: 193 PDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNKQDLTSHVGPV 252
                E   K+  S    D + H            MI    E  SGGP  +D+ S+ G  
Sbjct: 143 VG--SETRSKFYSSERFIDDQRHCIAGDA--HRVCMILNQYESSSGGPFHRDINSNNGGS 198

Query: 253 VLSMFTSTHYAGKEINTEFRNGEPWKKVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEV 312
             +++   +    +             + GP  +Y +   +         D      +++
Sbjct: 199 YNALYWYMNSGHVQ------TESYRMGLHGPYSMYFSRSGTPST----SIDTSFFADLDI 248

Query: 313 RKWPYNFPESVDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDS 372
           +           +   + RG V G                       A           +
Sbjct: 249 K----------GYVAASGRGKVAGT-------------------ASGADSSMDWVVHWYN 279

Query: 373 KGYQFWTKANKRGYFSIKNVRQGDYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYE 432
              Q+WT  +  G F+   ++ G Y +  +          ++++TV AGS       +  
Sbjct: 280 DAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYA---VATSSVTVSAGSTTTKN--ISG 334

Query: 433 PPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDL 492
             + G T+++IG  D     F                HP   R          +     L
Sbjct: 335 SVKTGTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSR----------MSSWGPL 377

Query: 493 EYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDSD 552
            YTVG S    D+  A   + V N         I F        G  TL++    +    
Sbjct: 378 TYTVGSS-ALTDFPMAV-FKSVNN------PVTIKFTATS-AQTGAATLRIGTTLSFAGG 428

Query: 553 -LHVRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQS 611
                 N+     P   T        + R    GL  +Y + +PS  +  G NTI +   
Sbjct: 429 RPQATINSYTGSAPAAPTN--LDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVI 486

Query: 612 RSRSPF----QGVLYDYIRLE 628
              S         ++D + L 
Sbjct: 487 SGSSGDTYLSPNFIFDCVELF 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query633
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 97.83
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.67
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.6
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.55
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.26
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 96.02
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 95.97
3qec_A150 Putative carbohydrate binding protein; suramin bin 95.82
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 95.81
2w3j_A145 Carbohydrate binding module; sugar-binding protein 95.23
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 94.85
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 93.42
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 93.34
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 93.23
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 89.39
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 88.67
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 88.26
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 88.14
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 83.57
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 83.5
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 83.08
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 82.87
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 82.84
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 82.74
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 82.64
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 82.31
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=1.6e-127  Score=1059.66  Aligned_cols=492  Identities=20%  Similarity=0.294  Sum_probs=430.0

Q ss_pred             eEEEEcCCEEEEEECC---eEEEEEeCCceeEEEEEECCeeccccccCCCCcceeEEEEecCCCCCCcccccccceEEEE
Q 006741            6 VQLNTKHRRLVVMDNG---LVQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVI   82 (633)
Q Consensus         6 v~l~~~g~~~~vidNg---~l~~tv~k~~G~itsi~y~G~~nll~~~~~~~~~GY~d~~w~~~g~~~~~~~~~gt~~~vi   82 (633)
                      ..+++++++ ||||||   +|+|+|+|++|+||||+|+|+|+|+  .++++++|      +.+|. +        .++++
T Consensus         2 ~g~t~~~~~-~vvd~g~n~~l~~tv~k~~G~itsi~y~G~e~~~--~~~~s~~g------sg~G~-~--------~~~~~   63 (508)
T 1nkg_A            2 FGITTSSSA-YVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQY--SSQGSHIG------SGLGS-A--------TVTAT   63 (508)
T ss_dssp             CEEEECSSE-EEEECCCTTCEEEEEETTTCCEEEEEETTEECBC--SSSCBEET------TCCSS-C--------EEEEE
T ss_pred             ccEEecCCE-EEEECCCCCEEEEEEeCCCceEEEEEECCEEccc--cCCCcccc------cCCCc-c--------eEEEE
Confidence            357899999 999655   9999999999999999999998777  46777888      22222 1        34444


Q ss_pred             eecCCEEEEEEEEeeccccCCCccccceeEEEEEEcCcceeEEEEEeeccCCCCCCCCcceEEEEEeCCCCcceeeeecc
Q 006741           83 MQDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMAISND  162 (633)
Q Consensus        83 ~~~~~~i~vs~~~~~~~s~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~~~d~  162 (633)
                       +++++|+|||++       +     +||||||||+|++|||||++++     .+++|+|+|+||||++++|++      
T Consensus        64 -~~~~~i~vs~~~-------~-----~l~~~~v~~~g~sg~Y~y~~~~-----~~~~lge~R~v~Rl~~~~f~~------  119 (508)
T 1nkg_A           64 -QSGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMATYIT-----AEPSIGELRFIARLNSDLLPN------  119 (508)
T ss_dssp             -EETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEEEES-----SCCTTSCEEEEEEECTTTCCE------
T ss_pred             -ecCCEEEEEEEe-------C-----CceEEEEEeCCCceEEEEEeec-----cCCCCCceEEEEEcChhhCCC------
Confidence             357999999997       2     8999999999999999999884     378999999999999999976      


Q ss_pred             ccccCCCCcccCCCccccccceEEecCCCCCCCCceeeceeeecccccccceEEEEcCCCCeEEEEEcCCCCcccCCCce
Q 006741          163 RQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNK  242 (633)
Q Consensus       163 r~~~mP~~~d~~~g~~l~~~e~v~l~~~~~~~~~G~~~sKY~~s~~~~d~~vhG~~~~g~~vG~W~I~ps~E~~sGGP~k  242 (633)
                      .+|.||+|+++ .|++ +++|+++..       +|+++||||||+++||++||||++  ++||||||+|++||++|||||
T Consensus       120 ~~r~~~~p~~~-~~~~-v~~~d~~~l-------~G~~~~KY~~s~~~~D~~vhG~~~--~~vG~w~I~~s~E~~sGGP~k  188 (508)
T 1nkg_A          120 EEPFGDVSTTA-DGTA-IEGSDVFLV-------GSETRSKFYSSERFIDDQRHCIAG--DAHRVCMILNQYESSSGGPFH  188 (508)
T ss_dssp             EETTGGGGCCT-TCEE-EETTTEEEE-------TTEEEEGGGGCCBGGGCSEEEEEC--SSCEEEEECCCCTTCSSCTTC
T ss_pred             ccccCCCCccc-cCcE-eeeccceee-------CCEEccceeccccceecceEEEEC--CCeEEEEEcCCcccccCCCcc
Confidence            26899999874 4554 788988665       899999999999999999999997  999999999999999999999


Q ss_pred             ecccccCCc---ceEEEEeeeeccCCcccccccCCcCcc-eeeceEEEEEcCCCCCCCccccHHHHHHHHHHHhccCCCC
Q 006741          243 QDLTSHVGP---VVLSMFTSTHYAGKEINTEFRNGEPWK-KVFGPALVYLNSVSSEEKPLNLWEDAKRQMMVEVRKWPYN  318 (633)
Q Consensus       243 qdL~~h~g~---~~l~~~~s~H~~g~~~~~~~~~ge~w~-kv~GP~~~y~N~g~~~~~~~~l~~Da~~~~~~E~~~WPy~  318 (633)
                      |||++|++|   ++||||+|+|++          +|.++ |||||||||||+|++++                 ++|||+
T Consensus       189 qdL~~h~~~~~~~~~~y~~s~H~~----------t~~~~~g~~GP~~~y~n~g~~~~-----------------~~wpys  241 (508)
T 1nkg_A          189 RDINSNNGGSYNALYWYMNSGHVQ----------TESYRMGLHGPYSMYFSRSGTPS-----------------TSIDTS  241 (508)
T ss_dssp             BCCCEEECSSCEEEEEEEECSTTC----------CSCCCCEEEEEEEEEEESSCCCC-----------------SCCCCG
T ss_pred             hhhhccCCcccceeeeeEeecccc----------cccccccccccEEEEECCCCCCC-----------------CCCCCc
Confidence            999999999   899999999986          45555 99999999999998753                 699999


Q ss_pred             CCCC---CCCCCCCCceEEEEEEEEccccccccccccCccEEEecCCCCCCcccccCccceeEEEeCCccceEeCcccCC
Q 006741          319 FPES---VDFPKRNQRGGVFGQLRVHDRYISNRLMWADSAYVGLAAPGGVGSWERDSKGYQFWTKANKRGYFSIKNVRQG  395 (633)
Q Consensus       319 f~~~---~~y~~~~qRGtVsG~l~~sd~~~~~~~~pa~~a~V~La~~g~~g~~q~~~k~yqywt~td~~G~FtI~nVrpG  395 (633)
                      |+++   ++|||+++||+|+|+|+  +       .|+....|++        |.  +|+|||||+||++|+|+|++||||
T Consensus       242 f~~s~~~~~y~~~~~RGtVsG~V~--G-------~~~~~~avv~--------~~--~k~~qywt~td~~G~FtI~~V~pG  302 (508)
T 1nkg_A          242 FFADLDIKGYVAASGRGKVAGTAS--G-------ADSSMDWVVH--------WY--NDAAQYWTYTSSSGSFTSPAMKPG  302 (508)
T ss_dssp             GGGGTTCTTCCCGGGCBEEEEEEE--S-------SCTTSCEEEE--------EE--CSSCEEEEECCTTCEEECCCBCSE
T ss_pred             cccccCccCCcCcccccEEEEEEc--C-------ccCCceEEEE--------Ec--CCCceeEEEECCCCcEEeCCcCCc
Confidence            9998   99999999999999985  3       4444443443        33  899999999999999999999999


Q ss_pred             ceEEEEEECceeeeeeeeeeEEEecCceeeecceEecCCCCCCceeEEeccCCCcceeecCCCCCccccccccCCChhhh
Q 006741          396 DYNLYAWIPGIVGDYKYSANITVRAGSNINLGVLVYEPPRKGPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFR  475 (633)
Q Consensus       396 tY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~p~~g~~LweIGi~Drta~eF~~~d~~~~~~n~~~~~~~d~~r  475 (633)
                      +|+|+||++|+   ...+.+|+|++|++++++ |+|+++ ++++|||||+|||+|+||+++|      +.++|| |++||
T Consensus       303 tY~L~a~~~G~---~~~~~~VtV~aG~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d------~~~~~h-p~~~r  370 (508)
T 1nkg_A          303 TYTMVYYQGEY---AVATSSVTVSAGSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAA------NQLRMH-PSDSR  370 (508)
T ss_dssp             EEEEEEEETTE---EEEEEEEEECTTCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHH------HHTTSC-TTCTT
T ss_pred             eEEEEEEECce---EEEEeEEEEcCCCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCC------cccccC-cchhc
Confidence            99999999888   366677999999999997 999976 8999999999999999999998      234666 67899


Q ss_pred             cchhhhhhccccCCCCeeEEeeccCCCCCceeEEEEeeCCCCCCCCeeEEEEEEecCCCCCccEEEEEEeccc-CCCceE
Q 006741          476 QYGLWERYVDLYRNDDLEYTVGDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASA-TDSDLH  554 (633)
Q Consensus       476 ~yglW~r~~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~  554 (633)
                      +| +|         +||+||||+|++ +||||||| +.+      .++|+|+|+|+++| .++|||||+||+| +++++|
T Consensus       371 ~~-~W---------~~l~ytVG~S~~-~Dw~ya~~-~~~------~~~w~I~F~l~~~~-~~~~tLri~la~a~a~~~~q  431 (508)
T 1nkg_A          371 MS-SW---------GPLTYTVGSSAL-TDFPMAVF-KSV------NNPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRPQ  431 (508)
T ss_dssp             SC-CC---------CSCEEETTTSCG-GGSBSEEE-TTT------TCCEEEEEEECGGG-CSCEEEEEEEEEEETTCEEE
T ss_pred             cc-cc---------CCeEEEeCcCch-hcCCeEEE-CCC------CCcEEEEEEcCccc-CCceEEEEEehhhccCCCeE
Confidence            98 87         479999999999 79999999 322      37899999999987 5799999999998 689999


Q ss_pred             EEEcCCCCCCCCCccccccCCCeeeeeEEEeeeEEEEEEeeCCceeeeecEEEEEEeeCCC--CC--ceEEEEEEEEec
Q 006741          555 VRFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRS--PF--QGVLYDYIRLEG  629 (633)
Q Consensus       555 V~vNg~~~~~p~~~t~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~g~s--~~--~~vmyD~IrLe~  629 (633)
                      |+|||+..+.|  .++.+++||||+||++||+|++++|+||+++|++|+|+|+|+++++++  +|  ++|||||||||.
T Consensus       432 V~VN~~~~~~~--~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~L~~  508 (508)
T 1nkg_A          432 ATINSYTGSAP--AAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELFQ  508 (508)
T ss_dssp             EEETTEECCCC--CCCCCCCSCCGGGTCCCSCCCEEEEEECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEEC
T ss_pred             EEECCcCCcCc--cccccCCCCeEEecceeeeeEEEEEEEcHHHeecCceEEEEEeccCCCCCccccccEEEEEEEecC
Confidence            99999876655  455689999999999999999999999999999999999999999986  67  699999999984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 633
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 3e-51
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  172 bits (438), Expect = 3e-51
 Identities = 38/196 (19%), Positives = 55/196 (28%), Gaps = 33/196 (16%)

Query: 437 GPTLWEIGIPDRSAAEFFVPDPYPTLANQLYTNHPEKFRQYGLWERYVDLYRNDDLEYTV 496
           G T+++IG  D     F                HP   R                L YTV
Sbjct: 2   GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMSSW----------GPLTYTV 44

Query: 497 GDSYHAKDWFFAHVTRDVGNRTYKPTTWRIIFELKHLNNNGHYTLQLALASATDS-DLHV 555
           G S    D+  A                 I F        G  TL++    +        
Sbjct: 45  GSS-ALTDFPMAVFKSV-------NNPVTIKFTATS-AQTGAATLRIGTTLSFAGGRPQA 95

Query: 556 RFNNPNADPPHFATGTIGKDNAIARHGIHGLYRLYSIDVPSVLLNRGRNTIYLTQSRSRS 615
             N+     P     T      + R    GL  +Y + +PS  +  G NTI +      S
Sbjct: 96  TINSYTGSAPAA--PTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSS 153

Query: 616 PFQ----GVLYDYIRL 627
                    ++D + L
Sbjct: 154 GDTYLSPNFIFDCVEL 169

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query633
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 100.0
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.45
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.42
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.29
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 97.68
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 96.09
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 93.15
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 92.81
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 92.23
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 91.43
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 90.38
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 89.21
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 88.26
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 88.22
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 87.01
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 86.72
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 84.84
d1jz8a4293 beta-Galactosidase, domain 5 {Escherichia coli [Ta 80.84
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Supersandwich
superfamily: Galactose mutarotase-like
family: Rhamnogalacturonase B, RhgB, N-terminal domain
domain: Rhamnogalacturonase B, RhgB, N-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=1.2e-49  Score=388.13  Aligned_cols=234  Identities=15%  Similarity=0.198  Sum_probs=203.0

Q ss_pred             EEEEcCCEEEEEECCe---EEEEEeCCceeEEEEEECCeeccccccCCCCcceeEEEEecCCCCCCcccccccceEEEEe
Q 006741            7 QLNTKHRRLVVMDNGL---VQVTLSNPEGEVIGIKYNEIDNVLETQNEEDNRGYWDVVWYEPEKQGSYDKLIATDFKVIM   83 (633)
Q Consensus         7 ~l~~~g~~~~vidNg~---l~~tv~k~~G~itsi~y~G~~nll~~~~~~~~~GY~d~~w~~~g~~~~~~~~~gt~~~vi~   83 (633)
                      -++++|++ +|||.|.   |+|+|++++|||+||+|+|+|.+...++++.++|                  +|+....+.
T Consensus         3 G~T~sg~~-yvVDtga~~~LvF~V~~s~gDitSi~Y~g~E~Q~~~k~ShI~SG------------------LGsatVs~~   63 (250)
T d1nkga3           3 GITTSSSA-YVIDTNAPNQLKFTVSRSSCDITSIIHYGTELQYSSQGSHIGSG------------------LGSATVTAT   63 (250)
T ss_dssp             EEEECSSE-EEEECCCTTCEEEEEETTTCCEEEEEETTEECBCSSSCBEETTC------------------CSSCEEEEE
T ss_pred             ceEecCCc-EEEeCCCCcceEEEEecCCCceEEEEECCEEeeccCccceeccC------------------ccceeEEee
Confidence            47899999 9999765   9999999999999999999986655444445555                  566666777


Q ss_pred             ecCCEEEEEEEEeeccccCCCccccceeEEEEEEcCcceeEEEEEeeccCCCCCCCCcceEEEEEeCCCCcceee-eecc
Q 006741           84 QDENQVEVSFTRTWNISLRGSLAPLNVDKRYIMRRGVSGFYFYAIMERKEGWPDVDMDQIRTVFKLQQNKFHFMA-ISND  162 (633)
Q Consensus        84 ~~~~~i~vs~~~~~~~s~~g~~~~~~l~~~~v~r~g~sgiY~y~i~~~~~~~p~~~lge~R~v~Rl~~~~f~~~~-~~d~  162 (633)
                      +..++|+|+|..       +     +|.||||+|+|++.|||++ +  .+  ++++|||||+|+||+.++||+.. .+| 
T Consensus        64 ~~~~yIkVT~~~-------~-----tLthYyv~r~G~~~IymaT-~--~~--aepsvGelRfIaRL~~~~lPn~~p~~d-  125 (250)
T d1nkga3          64 QSGDYIKVTCVT-------D-----TLTQYMVVHNGDPIIHMAT-Y--IT--AEPSIGELRFIARLNSDLLPNEEPFGD-  125 (250)
T ss_dssp             EETTEEEEEEEC-------S-----SEEEEEEEETTCCEEEEEE-E--ES--SCCTTSCEEEEEEECTTTCCEEETTGG-
T ss_pred             ccCCEEEEEEEe-------c-----CcEEEEEeecCCceEEEEe-c--cC--CCCCccceeEEEecccccCCCCCCCcc-
Confidence            788999999997       3     7999999999999999999 4  24  68899999999999999999943 222 


Q ss_pred             ccccCCCCcccCCCccccccceEEecCCCCCCCCceeeceeeecccccccceEEEEcCCCCeEEEEEcCCCCcccCCCce
Q 006741          163 RQRIMPMPEDRATGQPLAYPEAVLLTDPINPDLRGEVDDKYQYSSEDKDIRVHGWISSDPPVGFWMITPSDEFRSGGPNK  242 (633)
Q Consensus       163 r~~~mP~~~d~~~g~~l~~~e~v~l~~~~~~~~~G~~~sKY~~s~~~~d~~vhG~~~~g~~vG~W~I~ps~E~~sGGP~k  242 (633)
                             .++ ..+..++|.+||+++       +|+++||||.|.+++|+++|||++  +.+++|||++++|.+|||||+
T Consensus       126 -------vs~-t~~~taIEgsDVF~v-------dG~TrSKfYSs~R~IDd~~~~vsg--~~v~v~mi~~~~E~SSGGPFf  188 (250)
T d1nkga3         126 -------VST-TADGTAIEGSDVFLV-------GSETRSKFYSSERFIDDQRHCIAG--DAHRVCMILNQYESSSGGPFH  188 (250)
T ss_dssp             -------GGC-CTTCEEEETTTEEEE-------TTEEEEGGGGCCBGGGCSEEEEEC--SSCEEEEECCCCTTCSSCTTC
T ss_pred             -------ccc-cCCCcEEecccEEeE-------CCEEehhhccccceecccEEEEec--CCeEEEEEeCCccccCCCCcc
Confidence                   112 356678999999998       899999999999999999999985  999999999999999999999


Q ss_pred             ecccccCCcc---eEEEEeeeeccCCcccccccCCcCcc-eeeceEEEEEcCCCC-CCCccccHHHH
Q 006741          243 QDLTSHVGPV---VLSMFTSTHYAGKEINTEFRNGEPWK-KVFGPALVYLNSVSS-EEKPLNLWEDA  304 (633)
Q Consensus       243 qdL~~h~g~~---~l~~~~s~H~~g~~~~~~~~~ge~w~-kv~GP~~~y~N~g~~-~~~~~~l~~Da  304 (633)
                      |||++|.++.   +++||+|+|.|          +|+|| +|||||.|+|+++.. +.+++..|+|.
T Consensus       189 RdI~~n~~~~~~~Ly~ymnsgH~Q----------TE~~R~GlhGPY~l~Ft~~g~Ps~~lDtsff~~  245 (250)
T d1nkga3         189 RDINSNNGGSYNALYWYMNSGHVQ----------TESYRMGLHGPYSMYFSRSGTPSTSIDTSFFAD  245 (250)
T ss_dssp             BCCCEEECSSCEEEEEEEECSTTC----------CSCCCCEEEEEEEEEEESSCCCCSCCCCGGGGG
T ss_pred             hhhhhcCCCCccceeEEeecCccc----------chhhhcccCCceEEEEcCCCCCCCccchhhhhh
Confidence            9999999875   99999999987          89999 999999999998755 45899999987
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1jz8a4 b.30.5.1 (A:731-1023) beta-Galactosidase, domain 5 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure