Citrus Sinensis ID: 006744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630--
Protein Sequence
MPPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHccccccccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccEEEEcEEEccc
Coil and Loop (DISEMBL)
mppqtpqrppkpyffyghrkpsqnrptvygglfsnrqslrnpnsasephqsppfnvqkwdphylpnqktqsppsdpktfqlqrHLSPIARFITDAFrknqfqwgpQVVTELSKLRRVTPDLVAEVLKvennptlaskffhwagkqkgykhnfaSYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCkggrvvrgHELFREMKENGILIDRAIYGVLIEglvgegkvgkACDLLKDLVDsgyradlgiynsiigglcrvKQFDKAYKLFEVTvqddlapdfstvnpLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEElkgkgyssvpiYNILMGALLEIGEVKKALYLFGKmrglnlevnSLSFSIAIQChvesgdilEACECHNKiiemsqvpsvaaynCLTKGLCKIGEIDAAMMLVRDClgnvasgpteFKYALTILHVCRSGEAEKIIEVLNEmtqegcppnevICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLkffglesklkakgckllss
Flexible Loop (DISEMBL)
mppqtpqrppkpyffyghrkpsqnRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVlkvennptlASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTvqddlapdfsTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTnlrerkllteantiVYDEILIEHMKKKTADLVLSGLkffglesklkakgckllss
Low Complexity Region (SEG)
MppqtpqrppkpYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS
Disordered region (IsUnstruct)
*************FFY******************************************************************RHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKA********
Disordered Region (DISOPRED)
************YFFYGHRKPSQNRPTVYGGLF***************************************************LSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLS*
Disordered Region (DISEMBL)
********PPKPYFFYGHRKPSQNRPTVYGGLFSNRQS*************PPFNVQKWDPHYLP*************FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS
Disordered Region (DISPRO)
*****PQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	632	2.2.26 [Sep-21-2011]
Q9SVH3	727	Pentatricopeptide repeat-	yes	no	0.998	0.867	0.469	1e-170
Q9LW84	642	Pentatricopeptide repeat-	no	no	0.852	0.839	0.243	2e-38
Q9M907	871	Pentatricopeptide repeat-	no	no	0.761	0.552	0.254	1e-37
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.731	0.632	0.234	2e-37
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.686	0.575	0.249	2e-35
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.669	0.566	0.270	1e-34
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.697	0.697	0.238	2e-34
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.620	0.623	0.239	1e-33
Q9LR67	660	Pentatricopeptide repeat-	no	no	0.735	0.704	0.240	2e-33
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.762	0.526	0.235	9e-33

>sp|Q9SVH3|PP328_ARATH Pentatricopeptide repeat-containing protein At4g20740 OS=Arabidopsis thaliana GN=At4g20740 PE=3 SV=1

 Score =  598 bits (1541), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 339/722 (46%), Positives = 438/722 (60%), Gaps = 91/722 (12%)

Query: 2   PPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLF--------------SNRQSLRNPN---- 43
           PP    +  KP FF+GHRKPSQNRPTVYGGLF              SN  + R P     
Sbjct: 6   PPNLSDKSLKPNFFHGHRKPSQNRPTVYGGLFSNRQSIPRVSPQPQSNSLAHRTPFDLRK 65

Query: 44  -------------------SASEPHQSPPF---------NVQKWDPHY---LPNQKTQSP 72
                              SA+    SP           N   W P     L   +  +P
Sbjct: 66  WDPETHLPPPSPPSHSTVISAASERLSPIARFVLDAFRKNRNHWGPSVVSELNKLRRVTP 125

Query: 73  PSDPKTFQLQRHLSPIARFI---------------TDAF-----RKNQFQWGPQVVTELS 112
               +  +L    +  A+F                 +AF     R   F+   Q+   + 
Sbjct: 126 SIVAEVLKLGNDAAVAAKFFHWAGKQKGYKHDFAAYNAFAYCLNRNGHFRAADQLPELMD 185

Query: 113 KLRRVTPDLVAEVL---KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
              R   +   E+L     +N   L   + +   K+ G+K     YN +   L +N  F 
Sbjct: 186 SQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFD 245

Query: 170 AADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            A  V E     G                   RI EMLEIL++MR NLCKPDVFAYTAMI
Sbjct: 246 LALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMI 305

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
           + L +E NLDA LRVW+EM++D ++ DVMAY TL++GLCK GRV RG+ELF EMK   IL
Sbjct: 306 KTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQIL 365

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
           IDR IY VLIEG V +GKV  AC+L +DLVDSGY AD+GIYN++I GLC V Q DKAYKL
Sbjct: 366 IDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKL 425

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           F+V ++++L PDF T++P++V    M R+ +F  +L ++ +L + V+  L +FF+ L   
Sbjct: 426 FQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKLLCAD 485

Query: 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           EE+  MALDVF  LK KG+ SV +YNILM AL ++G+++K+L LF +MR L  E +S S+
Sbjct: 486 EEKNAMALDVFYILKTKGHGSVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSY 545

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           SIAI C VE GD+  AC  H KIIEMS VPS+AAY  LTKGLC+IGEIDA M+LVR+CLG
Sbjct: 546 SIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAAYLSLTKGLCQIGEIDAVMLLVRECLG 605

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           NV SGP EFKYALT+ HVC+   AEK+++V++EM QEG   NEVI  AIISGM KHGT++
Sbjct: 606 NVESGPMEFKYALTVCHVCKGSNAEKVMKVVDEMNQEGVFINEVIYCAIISGMSKHGTIK 665

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLL 630
            AR+VFT L++RK++TEA+ +VY+E+LIE  KKKTADLVLSG+KFFGLESKL+AKGC+LL
Sbjct: 666 VAREVFTELKKRKVMTEADMVVYEEMLIEQTKKKTADLVLSGIKFFGLESKLRAKGCRLL 725

Query: 631 SS 632
            +
Sbjct: 726 DN 727

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW84|PP236_ARATH Pentatricopeptide repeat-containing protein At3g16010 OS=Arabidopsis thaliana GN=At3g16010 PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 152/625 (24%), Positives = 268/625 (42%), Gaps = 86/625 (13%)

Query: 45  ASEPHQSPPFN------VQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRK 98
           +S PH S  F       VQ +    +PN +    P +   ++L R   P  R + + F +
Sbjct: 16  SSLPHLSQRFKQTENEIVQMFS---VPNHEESEKPQEK--WKLSRK-DPSVRMLDERFIR 69

Query: 99  --NQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASY 155
               F+WGP     L  L+ +V   LV  +L+++    +  +FF WAGK++ ++H+ ++Y
Sbjct: 70  IVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRNFQHDCSTY 129

Query: 156 NALAYCLSRNNLF----RAADQV-------------PELMDSQGR---IAEMLEILEKMR 195
             L  CL    L+    R   +V              EL+ + GR   +++ L +  + +
Sbjct: 130 MTLIRCLEEARLYGEMYRTIQEVVRNTYVSVSPAVLSELVKALGRAKMVSKALSVFYQAK 189

Query: 196 RNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM-KKDLVEADVMAYVTLIMGLCKGGRV 254
              CKP    Y ++I +L  E   +    V+ EM  +     D + Y  LI    K GR 
Sbjct: 190 GRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEMCNEGDCFPDTITYSALISSYEKLGRN 249

Query: 255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
                LF EMK+N +     IY  L+      GKV KA DL +++  +G    +  Y  +
Sbjct: 250 DSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGKVEKALDLFEEMKRAGCSPTVYTYTEL 309

Query: 315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM----- 369
           I GL +  + D+AY  ++  ++D L PD   +N L+    ++GR++    + ++M     
Sbjct: 310 IKGLGKAGRVDEAYGFYKDMLRDGLTPDVVFLNNLMNILGKVGRVEELTNVFSEMGMWRC 369

Query: 370 ----------------------------EKLKFSVAADLEKFFEFLVG---KEERIMMAL 398
                                       +K+K    +  E  +  L+    K  R+  AL
Sbjct: 370 TPTVVSYNTVIKALFESKAHVSEVSSWFDKMKADSVSPSEFTYSILIDGYCKTNRVEKAL 429

Query: 399 DVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            + EE+  KG+   P  Y  L+ AL +    + A  LF +++     V+S  +++ I+  
Sbjct: 430 LLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFKELKENFGNVSSRVYAVMIKHF 489

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD-----CLGNV 512
            + G + EA +  N++      P V AYN L  G+ K G I+ A  L+R      C  ++
Sbjct: 490 GKCGKLSEAVDLFNEMKNQGSGPDVYAYNALMSGMVKAGMINEANSLLRKMEENGCRADI 549

Query: 513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            S      + + +    R+G   + IE+   +   G  P+ V  + ++      G  EEA
Sbjct: 550 NS------HNIILNGFARTGVPRRAIEMFETIKHSGIKPDGVTYNTLLGCFAHAGMFEEA 603

Query: 573 RKVFTNLRERKLLTEANTIVYDEIL 597
            ++   ++++    E + I Y  IL
Sbjct: 604 ARMMREMKDKGF--EYDAITYSSIL 626

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1

 Score =  158 bits (400), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 131/514 (25%), Positives = 225/514 (43%), Gaps = 33/514 (6%)

Query: 103 WGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC 161
           WGP     LS L  +  P+ V  VL+   +   A ++F W  ++    H   SYN+L   
Sbjct: 48  WGPSAENTLSALSFKPQPEFVIGVLRRLKDVNRAIEYFRWYERRTELPHCPESYNSLLLV 107

Query: 162 LSRNNLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPD 202
           ++R   F A DQ+   M   G                   ++ E  ++++ MR+   +P 
Sbjct: 108 MARCRNFDALDQILGEMSVAGFGPSVNTCIEMVLGCVKANKLREGYDVVQMMRKFKFRPA 167

Query: 203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR 262
             AYT +I   +A  + D  L ++++M++   E  V  + TLI G  K GRV     L  
Sbjct: 168 FSAYTTLIGAFSAVNHSDMMLTLFQQMQELGYEPTVHLFTTLIRGFAKEGRVDSALSLLD 227

Query: 263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK 322
           EMK + +  D  +Y V I+     GKV  A     ++  +G + D   Y S+IG LC+  
Sbjct: 228 EMKSSSLDADIVLYNVCIDSFGKVGKVDMAWKFFHEIEANGLKPDEVTYTSMIGVLCKAN 287

Query: 323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE- 381
           + D+A ++FE   ++   P     N +++     G+ D  + LL + ++ K S+ + +  
Sbjct: 288 RLDEAVEMFEHLEKNRRVPCTYAYNTMIMGYGSAGKFDEAYSLL-ERQRAKGSIPSVIAY 346

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
                 + K  ++  AL VFEE+K     ++  YNIL+  L   G++  A  L   M+  
Sbjct: 347 NCILTCLRKMGKVDEALKVFEEMKKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKA 406

Query: 442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAA 501
            L  N  + +I +    +S  + EAC    ++      P    +  L  GL K+G +D A
Sbjct: 407 GLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDA 466

Query: 502 M-----MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
                 ML  DC  N         Y   I +    G  E   ++  +M  + C P+  + 
Sbjct: 467 YKVYEKMLDSDCRTN------SIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLL 520

Query: 557 SAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +  +  M K G  E+ R +F  ++ R+ + +A +
Sbjct: 521 NTYMDCMFKAGEPEKGRAMFEEIKARRFVPDARS 554

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  158 bits (399), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 122/520 (23%), Positives = 232/520 (44%), Gaps = 58/520 (11%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           +   ++TP  + ++L++  N + + + F W G Q GY+H+F  Y  L   L  N  F+  
Sbjct: 71  NSFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKTI 130

Query: 172 DQVPELMDSQGRIAEMLEILEKMR------------------RNL--CKPDVFAYTAMIR 211
           D++   M  +G + +    +  MR                  RN+  C+P   +Y  ++ 
Sbjct: 131 DRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNVYSCEPTFKSYNVVLE 190

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
           +L +         V+ +M    +   +  +  ++   C    +     L R+M ++G + 
Sbjct: 191 ILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVP 250

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           +  IY  LI  L    +V +A  LL+++   G   D   +N +I GLC+  + ++A K+ 
Sbjct: 251 NSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMV 310

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK-------------------- 371
              +    APD  T   L+    ++GR+D    L  ++ K                    
Sbjct: 311 NRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLD 370

Query: 372 ----------LKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYS-SVPIYNIL 418
                       + +  D+  +   + G  KE  + +AL+V  +++ KG   +V  Y IL
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query: 419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ 478
           +    ++G++ +A  +  +M    L+ N++ F+  I    +   I EA E   ++     
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490

Query: 479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL--GNVASGPTEFKYALTILHVCRSGEAEK 536
            P V  +N L  GLC++ EI  A+ L+RD +  G VA+  T   Y   I    R GE ++
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVT---YNTLINAFLRRGEIKE 547

Query: 537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF 576
             +++NEM  +G P +E+  +++I G+C+ G +++AR +F
Sbjct: 548 ARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLF 587

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  150 bits (380), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/461 (24%), Positives = 216/461 (46%), Gaps = 27/461 (5%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIA 185
           L V+ N     +  H      G K + +++N L   L R +  R A  + E M S G + 
Sbjct: 163 LLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLV- 221

Query: 186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
                          PD   +T +++    E +LD  LR+ E+M +       ++   ++
Sbjct: 222 ---------------PDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIV 266

Query: 246 MGLCKGGRVVRGHELFREM-KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY 304
            G CK GRV       +EM  ++G   D+  +  L+ GL   G V  A +++  ++  GY
Sbjct: 267 HGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGY 326

Query: 305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFK 364
             D+  YNS+I GLC++ +  +A ++ +  +  D +P+  T N L+    +  +++   +
Sbjct: 327 DPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATE 386

Query: 365 LLAQMEKLKFSVAADLEKFFEFLVG----KEERIMMALDVFEELKGKGYSSVPI-YNILM 419
            LA++   K  +  D+  F   + G    +  R+  A+++FEE++ KG       YN+L+
Sbjct: 387 -LARVLTSK-GILPDVCTFNSLIQGLCLTRNHRV--AMELFEEMRSKGCEPDEFTYNMLI 442

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
            +L   G++ +AL +  +M       + ++++  I    ++    EA E  +++      
Sbjct: 443 DSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVS 502

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
            +   YN L  GLCK   ++ A  L+ D +      P ++ Y   + H CR G+ +K  +
Sbjct: 503 RNSVTYNTLIDGLCKSRRVEDAAQLM-DQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAAD 561

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR 580
           ++  MT  GC P+ V    +ISG+CK G +E A K+  +++
Sbjct: 562 IVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQ 602

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  148 bits (374), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 203/451 (45%), Gaps = 28/451 (6%)

Query: 135 ASKFFHWAGKQKGYKHNFASYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILE 192
           A    H A +  G+     SYNA+  A   S+ N+  A +   E+++SQ           
Sbjct: 153 ALSIVHLA-QAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ----------- 200

Query: 193 KMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG 252
                   P+VF Y  +IR      N+D  L ++++M+      +V+ Y TLI G CK  
Sbjct: 201 ------VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254

Query: 253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN 312
           ++  G +L R M   G+  +   Y V+I GL  EG++ +   +L ++   GY  D   YN
Sbjct: 255 KIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYN 314

Query: 313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL 372
           ++I G C+   F +A  +    ++  L P   T   L+    + G M+   + L QM   
Sbjct: 315 TLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQM--- 371

Query: 373 KFSVAADLEKFFEFLV-GKEERIMM--ALDVFEELKGKGYS-SVPIYNILMGALLEIGEV 428
           +       E+ +  LV G  ++  M  A  V  E+   G+S SV  YN L+      G++
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKM 431

Query: 429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL 488
           + A+ +   M+   L  + +S+S  +     S D+ EA     +++E    P    Y+ L
Sbjct: 432 EDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSL 491

Query: 489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG 548
            +G C+      A  L  + L  V   P EF Y   I   C  G+ EK +++ NEM ++G
Sbjct: 492 IQGFCEQRRTKEACDLYEEML-RVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKG 550

Query: 549 CPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
             P+ V  S +I+G+ K     EA+++   L
Sbjct: 551 VLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  148 bits (373), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/466 (23%), Positives = 216/466 (46%), Gaps = 25/466 (5%)

Query: 147 GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG-------------------RIAEM 187
           G  H+  +Y+    C  R +    A  V   M   G                   RI++ 
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           + ++++M     KPD F +T +I  L         + + ++M +   + D++ Y T++ G
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
           LCK G +     L ++M++  I  D  IY  +I+GL     +  A +L  ++ + G R D
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA 367
           +  Y+S+I  LC   ++  A +L    ++  + P+  T + L+    + G++    KL  
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 368 QMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILMGALLE 424
           +M  +K S+  D+  +   + G    +R+  A  +FE +  K  + +V  Y+ L+    +
Sbjct: 353 EM--IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCK 410

Query: 425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
              V++ + LF +M    L  N+++++  I    ++ D   A     +++ +   P++  
Sbjct: 411 AKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILT 470

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM 544
           YN L  GLCK G++ A  M+V + L      P  + Y + I  +C++G+ E   E+   +
Sbjct: 471 YNILLDGLCKNGKL-AKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL 529

Query: 545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           + +G  PN +  + +ISG C+ G+ EEA  +   ++E   L  + T
Sbjct: 530 SLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGT 575

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  145 bits (365), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 205/443 (46%), Gaps = 51/443 (11%)

Query: 148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYT 207
           Y+ N  ++N L + L  +N                + +E + ++++M    C+PD+F Y 
Sbjct: 181 YQPNTVTFNTLIHGLFLHN----------------KASEAVALIDRMVARGCQPDLFTYG 224

Query: 208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN 267
            ++  L    ++D  L + ++M+K  +EADV+ Y T+I  LC    V     LF EM   
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK 284

Query: 268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA 327
           GI  +   Y  LI  L   G+   A  LL D+++     ++  ++++I    +  +  +A
Sbjct: 285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL 387
            KL++  ++  + PD  T + L+          N F +  ++++ K          FE +
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLI----------NGFCMHDRLDEAK--------HMFELM 386

Query: 388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
           + K+                 + +V  YN L+    +   V++ + LF +M    L  N+
Sbjct: 387 ISKD----------------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNT 430

Query: 448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD 507
           ++++  IQ   ++GD   A +   K++     P +  Y+ L  GLCK G+++ A ++V +
Sbjct: 431 VTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKA-LVVFE 489

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            L      P  + Y + I  +C++G+ E   ++   ++ +G  PN +I + +ISG C+ G
Sbjct: 490 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549

Query: 568 TLEEARKVFTNLRERKLLTEANT 590
             EEA  +F  ++E   L  + T
Sbjct: 550 LKEEADALFREMKEDGTLPNSGT 572

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1

 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 224/495 (45%), Gaps = 30/495 (6%)

Query: 114 LRRVTPDLVAEVLK---VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNN---- 166
           L +++P+ V+ VLK   +   P +A  FF W+ KQK Y HN   Y +L   L+       
Sbjct: 111 LIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDR 170

Query: 167 ---------------LFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
                             AA+ + +     G + E+L +  KM+ N  +P ++ Y  ++ 
Sbjct: 171 IRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMN 230

Query: 212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI 271
            L +   +D+  RV+E M+   ++ D++ Y T+I G CK G+  +  E  R+M+  G   
Sbjct: 231 GLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEA 290

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF 331
           D+  Y  +I+    +   G    L +++ + G +     ++ +IGGLC+  + ++ Y +F
Sbjct: 291 DKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVF 350

Query: 332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG-- 389
           E  ++    P+ +    L+   A+ G +++  +LL +M    F    D+  +   + G  
Sbjct: 351 ENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK--PDVVTYSVVVNGLC 408

Query: 390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL 448
           K  R+  ALD F   +  G + +   Y+ L+  L + G V +A  LF +M       +S 
Sbjct: 409 KNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSY 468

Query: 449 SFSIAIQCHVESGDILEACECHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRD 507
            ++  I    +   + EA     ++ E      +V  Y  L  G+ K    + A+ L  D
Sbjct: 469 CYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLW-D 527

Query: 508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG 567
            + +    PT   +      +C SG+  +  ++L+E+   G   +   C  +I+ +CK G
Sbjct: 528 MMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAPMGVILDAA-CEDMINTLCKAG 586

Query: 568 TLEEARKVFTNLRER 582
            ++EA K+   + ER
Sbjct: 587 RIKEACKLADGITER 601

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score =  142 bits (357), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 221/496 (44%), Gaps = 14/496 (2%)

Query: 112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           S +  ++P  V+ +  ++ +P  A  F HW  +   YKH+  SY +L   L  N      
Sbjct: 83  SMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVV 142

Query: 172 DQVPELM----DSQGRIAEMLEILEKMRRN-----LCKPDVFAYTAMIRVLAAERNLDAC 222
            ++  LM    DS G    +L++  KM ++       K  +  Y  ++  LA    +D  
Sbjct: 143 FKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEM 202

Query: 223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
            +V+ EM +D V  ++  Y  ++ G CK G V   ++   ++ E G+  D   Y  LI G
Sbjct: 203 KQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262

Query: 283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                 +  A  +  ++   G R +   Y  +I GLC  ++ D+A  LF     D+  P 
Sbjct: 263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322

Query: 343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFE 402
             T   L+       R      L+ +ME+                +  + +   A ++  
Sbjct: 323 VRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLG 382

Query: 403 ELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG 461
           ++  KG   +V  YN L+    + G ++ A+ +   M    L  N+ +++  I+ + +S 
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKS- 441

Query: 462 DILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY 521
           ++ +A    NK++E   +P V  YN L  G C+ G  D+A  L+   + +    P ++ Y
Sbjct: 442 NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDQWTY 500

Query: 522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
              I  +C+S   E+  ++ + + Q+G  PN V+ +A+I G CK G ++EA  +   +  
Sbjct: 501 TSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLS 560

Query: 582 RKLLTEANTIVYDEIL 597
           +  L   N++ ++ ++
Sbjct: 561 KNCL--PNSLTFNALI 574

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	632
255544107	1128	pentatricopeptide repeat-containing prot	0.977	0.547	0.637	0.0
359495078	1294	PREDICTED: pentatricopeptide repeat-cont	0.976	0.476	0.606	0.0
357457245	767	Pentatricopeptide repeat-containing prot	0.993	0.818	0.536	0.0
356574085	733	PREDICTED: pentatricopeptide repeat-cont	0.993	0.856	0.530	0.0
296081308	729	unnamed protein product [Vitis vinifera]	0.976	0.846	0.528	0.0
449445049	726	PREDICTED: pentatricopeptide repeat-cont	0.984	0.856	0.502	0.0
224075802	728	predicted protein [Populus trichocarpa]	0.976	0.847	0.520	0.0
15233383	727	pentatricopeptide repeat-containing prot	0.998	0.867	0.469	1e-168
297804088	731	pentatricopeptide repeat-containing prot	0.802	0.693	0.553	1e-161
326493764	730	predicted protein [Hordeum vulgare subsp	0.974	0.843	0.391	1e-132

>gi|255544107|ref|XP_002513116.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548127|gb|EEF49619.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  835 bits (2158), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/676 (63%), Positives = 496/676 (73%), Gaps = 58/676 (8%)

Query: 13   YFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQSP 72
            YFFYGHRKPSQNRP V GGLFSNRQ ++ P ++ +P    PF++Q WDP   P   ++SP
Sbjct: 455  YFFYGHRKPSQNRPVVRGGLFSNRQIIK-PQNSIKPKNPVPFDLQNWDPQN-PCPSSKSP 512

Query: 73   P--SDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKVEN 130
            P   +     L + LSPI+RFI DAFRKN  +WGP VV EL KLRRVTPDLV+EVLKVEN
Sbjct: 513  PLSQNHSLSTLSQRLSPISRFIRDAFRKNSNKWGPPVVAELRKLRRVTPDLVSEVLKVEN 572

Query: 131  NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--IAEML 188
            +P LAS+FFHWAGKQKGY+HNFASYNA AYCL+R++ FRAADQ+PELMDSQG+    +  
Sbjct: 573  DPHLASQFFHWAGKQKGYRHNFASYNAYAYCLNRSSFFRAADQLPELMDSQGKPPTEKQF 632

Query: 189  EIL-----------------EKMRRNLCKPDVFAYTAMIRVLAAERNLDACL-------- 223
            EIL                 +KM++   KP  F Y  ++  L    +LD  L        
Sbjct: 633  EILIRMHSDANRGLRVYHVYQKMKKFGVKPRAFLYNRIMDALIKTAHLDLALVVYDDFKS 692

Query: 224  ---------------------------RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
                                        VWEEMK+D V  DVMAY T++ GLCKGGRV  
Sbjct: 693  DGLVEDSVTYMILIKGLCKFGRIDEMMEVWEEMKRDGVNPDVMAYATVVTGLCKGGRVAE 752

Query: 257  GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG 316
            G+ELF+EMKEN +LIDRAIYGVLIE  V +GK+G ACDLL+ LVDSGYRADLGIYNS+I 
Sbjct: 753  GYELFKEMKENKVLIDRAIYGVLIEAFVKDGKIGSACDLLQGLVDSGYRADLGIYNSLIE 812

Query: 317  GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV 376
            GLC VK+ DKA KLF++ VQ+ L  DF TVNP+LV  AEM RMD F KLL QME+L FSV
Sbjct: 813  GLCNVKRVDKARKLFQIMVQEGLELDFKTVNPMLVSYAEMKRMDEFCKLLVQMERLGFSV 872

Query: 377  AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG 436
              D+ K F FLV +EE I +AL+VFEELK KGY SV IYN LM ALL++GEV+KAL LF 
Sbjct: 873  MDDISKLFSFLVRREEIITLALEVFEELKVKGYISVLIYNTLMEALLKVGEVRKALSLFS 932

Query: 437  KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG 496
            +M+ LN E +S ++SIA+ C VE G+I EAC CHNKIIEMS VPSVAAY  LTKGLC IG
Sbjct: 933  EMKDLNCEPDSNTYSIAVICFVEDGNIQEACVCHNKIIEMSSVPSVAAYCSLTKGLCDIG 992

Query: 497  EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC 556
            EID AMMLVRDCLGNV SGP EFKY LT+LHVCRSG+AEK+IEVLNEM  E CPPNEVI 
Sbjct: 993  EIDEAMMLVRDCLGNVTSGPMEFKYTLTVLHVCRSGDAEKVIEVLNEMMHENCPPNEVIL 1052

Query: 557  SAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF 616
            SAIISGMCKHGTLEEARKVFTNLRERKLLTEA TI YDE LIEHMKKKTADLV+SGLKFF
Sbjct: 1053 SAIISGMCKHGTLEEARKVFTNLRERKLLTEAKTIFYDERLIEHMKKKTADLVVSGLKFF 1112

Query: 617  GLESKLKAKGCKLLSS 632
            GLESKL+AKGC LLS+
Sbjct: 1113 GLESKLRAKGCTLLST 1128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495078|ref|XP_002269066.2| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like [Vitis vinifera]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/676 (60%), Positives = 477/676 (70%), Gaps = 59/676 (8%)

Query: 11   KPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQ 70
            K YFFYGHRKPSQNRPTV+GGLFSNR +L NP   +  + +  FN+Q WDP   P     
Sbjct: 551  KFYFFYGHRKPSQNRPTVHGGLFSNRTTL-NPKPPTLQNPTTHFNLQNWDPDS-PKALAI 608

Query: 71   SPPSDP--KTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKV 128
             P   P  + F + ++LSPIAR+I D+FRK++  WGP VV +L+KLRRVTP LVAEVLKV
Sbjct: 609  PPSKTPCERFFDIAKNLSPIARYICDSFRKHR-NWGPPVVADLNKLRRVTPVLVAEVLKV 667

Query: 129  ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--IAE 186
            + +P + SKFFHWAGKQKGYKHNFASYNA AYCL+R+N FRAADQVPELM+ QG+    +
Sbjct: 668  QTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEK 727

Query: 187  MLEIL-----------------EKMRRNLCKPDVFAY----------------------- 206
              EIL                 EKM++   KP VF Y                       
Sbjct: 728  QFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDF 787

Query: 207  ----------TAMIRV--LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV 254
                      T MI V  L     +D  L VWEEM+KD VE DVMAY TL+  LC G RV
Sbjct: 788  KEDGLVEESVTYMILVKGLCKAGRIDEVLEVWEEMRKDKVEPDVMAYTTLVAALCNGNRV 847

Query: 255  VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI 314
              G ELF+EMK+   LIDRAIYG LIEG V   +VG ACDLLKDL+DSGYRADL IYNS+
Sbjct: 848  GEGFELFKEMKQKKYLIDRAIYGSLIEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSL 907

Query: 315  IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF 374
            I G+C VKQ DKAYKLF+VTV + L P+F TV P+LV  AEM RMD+F  LL QM+KL F
Sbjct: 908  IEGMCNVKQVDKAYKLFQVTVHESLEPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGF 967

Query: 375  SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL 434
             V  DL KFF  ++ K ER+ +AL+VFE LK KGY S+ IYNILM A+   GEVKKAL L
Sbjct: 968  PVIDDLSKFFSVMIEKGERLKLALEVFEHLKAKGYCSISIYNILMEAIHRTGEVKKALSL 1027

Query: 435  FGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK 494
            F  ++  N + +S ++S AI C VE GD+ EAC C+NKIIEM Q+PSVAAY  L KGLCK
Sbjct: 1028 FDDIKDSNFKPDSSTYSNAIICFVEVGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCK 1087

Query: 495  IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV 554
              EIDAA+MLVRDCL NV SGP EFKY LTILH C+SG AEK+I+VLNEM QEGC P+EV
Sbjct: 1088 SEEIDAAIMLVRDCLANVTSGPMEFKYTLTILHACKSGNAEKVIDVLNEMMQEGCTPDEV 1147

Query: 555  ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK 614
              SA+ISGMCKHGTLEEARKVF+N+RERKLLTEAN IVYDEILIEHMKKKTADLVLSGLK
Sbjct: 1148 TYSALISGMCKHGTLEEARKVFSNMRERKLLTEANVIVYDEILIEHMKKKTADLVLSGLK 1207

Query: 615  FFGLESKLKAKGCKLL 630
            FFGLESKL++KG  LL
Sbjct: 1208 FFGLESKLRSKGSTLL 1223

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357457245|ref|XP_003598903.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355487951|gb|AES69154.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/725 (53%), Positives = 473/725 (65%), Gaps = 97/725 (13%)

Query: 1   MPPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPN-SASEPHQSPPFNVQKW 59
           MPPQTP  P K YFFYGHRKPSQNRPTV GGLFSNR++L  P   +++P  S  F +QKW
Sbjct: 1   MPPQTPTPPNKFYFFYGHRKPSQNRPTVRGGLFSNRKTLTPPKPKSTKPTNS--FQIQKW 58

Query: 60  DPHYLPNQKTQSPPSD---PKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRR 116
           DPH+L    + SP        TF     LSPIARFI DAFRKN   WGP VVTEL+KLRR
Sbjct: 59  DPHFLSQPNSPSPSPSPSPEATFSASLRLSPIARFILDAFRKNNNNWGPPVVTELNKLRR 118

Query: 117 VTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPE 176
           VTP LVAEVLKV+ NPTLA KFFHW  KQKGY HNFASYNA  YCL+R N FRAADQ+PE
Sbjct: 119 VTPTLVAEVLKVQTNPTLAFKFFHWVEKQKGYHHNFASYNAFTYCLNRANHFRAADQLPE 178

Query: 177 LMDSQ-------------------GRIAEMLEILEKMRRNL-CKPDVFAYTAMIRVLAAE 216
           LMD+Q                   GR   +  + +KMR     KP VF Y  ++  L   
Sbjct: 179 LMDAQGKPPSEKQFEILIRMHSDAGRGLRVYHVYDKMRNKFGVKPRVFLYNRIMDALVKT 238

Query: 217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV-----VRGH------------- 258
            +LD  L V+ + ++D +  + + ++ LI GLCKGG++     V G              
Sbjct: 239 GHLDLALSVYNDFREDGLVEESVTFMILIKGLCKGGKIDEMLEVLGRMREKLCKPDVFAY 298

Query: 259 -----------------ELFREMKENGILIDRAIYGVLIEGLVGEGKV------------ 289
                             +++EMK + +  D   YG +I GL   G+V            
Sbjct: 299 TALVRIMVKEGNLDGCLRVWKEMKRDRVDPDVMAYGTIIGGLAKGGRVSEGYELFKEMKS 358

Query: 290 -----------------------GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK 326
                                  G A DLLKDLV SGYRADLG+YN++I GLC + + +K
Sbjct: 359 KGHLIDRAIYGSLVESFVAGNKVGLAFDLLKDLVSSGYRADLGMYNNLIEGLCNLNKVEK 418

Query: 327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF 386
           AYKLF+VT+Q+ L PDF +V PLL+  AE  RM+ FF LL +M+KL F V  DL KFF  
Sbjct: 419 AYKLFQVTIQEGLEPDFLSVKPLLLAYAEAKRMEEFFMLLEKMKKLGFPVIDDLSKFFSH 478

Query: 387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           LV K+    MAL++F  LK K Y SV IYNI M +L   G+V+KAL LF +++G +LE +
Sbjct: 479 LVEKKGP-EMALEIFTHLKEKSYVSVEIYNIFMESLHLSGKVEKALSLFDEIKGSDLEPD 537

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
           S +++IAI C V+ G I EACECHNKIIEMS +PSVAAYNCL KGLC IGEID AM+LVR
Sbjct: 538 SSTYNIAILCLVDHGQIKEACECHNKIIEMSSIPSVAAYNCLAKGLCNIGEIDEAMLLVR 597

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH 566
           DCLGNV SGP EFKY LTI+ +C+S  AEK+I+VLNEM QEGC  + V+CSAIISGMCK+
Sbjct: 598 DCLGNVTSGPMEFKYCLTIIRMCKSNVAEKLIDVLNEMMQEGCSLDNVVCSAIISGMCKY 657

Query: 567 GTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKG 626
           GT+EEARKVF+ LRERKLLTE++TIVYDE+LI+HMKKKTADLV+SGLKFFGLESKLK+KG
Sbjct: 658 GTIEEARKVFSILRERKLLTESDTIVYDELLIDHMKKKTADLVISGLKFFGLESKLKSKG 717

Query: 627 CKLLS 631
           CKL S
Sbjct: 718 CKLPS 722

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574085|ref|XP_003555182.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like [Glycine max]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 391/737 (53%), Positives = 480/737 (65%), Gaps = 109/737 (14%)

Query: 1   MPPQTPQ--RP---------PKP----YFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSA 45
           MPPQ P+  +P         PKP    YFFYGHR PSQNRPTV GGLFSNRQ+L NPN +
Sbjct: 1   MPPQIPKPTKPRNCGPPFTTPKPTNKFYFFYGHRNPSQNRPTVRGGLFSNRQTL-NPNPS 59

Query: 46  SEPHQSPPFNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGP 105
                + PFN++ WDPH+L N  +   PS   +  L+  LSPIARFI DAFR+N  +W P
Sbjct: 60  QPKPTTKPFNIKNWDPHFLSNPNSNPSPSTLSSASLR--LSPIARFIVDAFRRNDNKWCP 117

Query: 106 QVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRN 165
            V  ELSKLRR+TP+LVAEVLKV+ N TLASKFFHWAG Q+GY HNFASYNALAYCL+R+
Sbjct: 118 NVAAELSKLRRITPNLVAEVLKVQTNHTLASKFFHWAGSQRGYHHNFASYNALAYCLNRH 177

Query: 166 NLFRAADQVPELMDSQG-------------------RIAEMLEILEKMRRNL-CKPDVFA 205
           + FRAADQ+PELM+SQG                   R   +  + EKMR     KP VF 
Sbjct: 178 HQFRAADQLPELMESQGKPPSEKQFEILIRMHSDANRGLRVYHVYEKMRNKFGVKPRVFL 237

Query: 206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV-----VRGH-- 258
           Y  ++  L    +LD  L V++++K+D +  + + ++ L+ GLCK GR+     V G   
Sbjct: 238 YNRVMDALVRTGHLDLALSVYDDLKEDGLVEESVTFMVLVKGLCKCGRIDEMLEVLGRMR 297

Query: 259 ----------------------------ELFREMKENGILIDRAIYGVLIEGLVGEGKV- 289
                                        ++ EMK + +  D   Y  +I GL   G+V 
Sbjct: 298 ERLCKPDVFAYTALVKILVPAGNLDACLRVWEEMKRDRVEPDVKAYATMIVGLAKGGRVQ 357

Query: 290 ----------GKAC------------------------DLLKDLVDSGYRADLGIYNSII 315
                     GK C                        DLLKDLV SGYRADLGIY  +I
Sbjct: 358 EGYELFREMKGKGCLVDRVIYGALVEAFVAEGKVELAFDLLKDLVSSGYRADLGIYICLI 417

Query: 316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS 375
            GLC + +  KAYKLF++TV++ L PDF TV PLLV  AE  RM+ F KLL QM+KL F 
Sbjct: 418 EGLCNLNRVQKAYKLFQLTVREGLEPDFLTVKPLLVAYAEANRMEEFCKLLEQMQKLGFP 477

Query: 376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF 435
           V ADL KFF  LV K+  I MAL+ F +LK KG+ SV IYNI M +L +IGEVKKAL LF
Sbjct: 478 VIADLSKFFSVLVEKKGPI-MALETFGQLKEKGHVSVEIYNIFMDSLHKIGEVKKALSLF 536

Query: 436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI 495
            +M+GL+L+ +S ++  AI C V+ G+I EAC CHN+IIEMS +PSVAAY+ LTKGLC+I
Sbjct: 537 DEMKGLSLKPDSFTYCTAILCLVDLGEIKEACACHNRIIEMSCIPSVAAYSSLTKGLCQI 596

Query: 496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI 555
           GEID AM+LVRDCLGNV+ GP EFKY+LTI+H C+S  AEK+I+VLNEM ++GC  + VI
Sbjct: 597 GEIDEAMLLVRDCLGNVSDGPLEFKYSLTIIHACKSNVAEKVIDVLNEMIEQGCSLDNVI 656

Query: 556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKF 615
             +IISGMCKHGT+EEARKVF+NLRER  LTE+NTIVYDE+LI+HMKKKTADLVLS LKF
Sbjct: 657 YCSIISGMCKHGTIEEARKVFSNLRERNFLTESNTIVYDELLIDHMKKKTADLVLSSLKF 716

Query: 616 FGLESKLKAKGCKLLSS 632
           FGLESKLKAKGCKLL S
Sbjct: 717 FGLESKLKAKGCKLLPS 733

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081308|emb|CBI17752.3| unnamed protein product [Vitis vinifera]

 Score =  699 bits (1803), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/711 (52%), Positives = 463/711 (65%), Gaps = 94/711 (13%)

Query: 11  KPYFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSPPFNVQKWDPHYLPNQKTQ 70
           K YFFYGHRKPSQNRPTV+GGLFSNR +L NP   +  + +  FN+Q WDP   P     
Sbjct: 12  KFYFFYGHRKPSQNRPTVHGGLFSNRTTL-NPKPPTLQNPTTHFNLQNWDPDS-PKALAI 69

Query: 71  SPPSDP--KTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVLKV 128
            P   P  + F + ++LSPIAR+I D+FRK++  WGP VV +L+KLRRVTP LVAEVLKV
Sbjct: 70  PPSKTPCERFFDIAKNLSPIARYICDSFRKHR-NWGPPVVADLNKLRRVTPVLVAEVLKV 128

Query: 129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--IAE 186
           + +P + SKFFHWAGKQKGYKHNFASYNA AYCL+R+N FRAADQVPELM+ QG+    +
Sbjct: 129 QTDPVICSKFFHWAGKQKGYKHNFASYNAFAYCLNRSNQFRAADQVPELMNMQGKPPSEK 188

Query: 187 MLEIL-----------------EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM 229
             EIL                 EKM++   KP VF Y  ++  L    +LD  + V+E+ 
Sbjct: 189 QFEILIRMHIDANRGLRVYYVYEKMKKFGIKPRVFLYNRIMDGLVKTGHLDLAMSVYEDF 248

Query: 230 KKDLVEADVMAYVTLIMGLCKGGRV---------VRGH---------------------- 258
           K+D +  + + Y+ L+ GLCK GR+         +RG+                      
Sbjct: 249 KEDGLVEESVTYMILVKGLCKAGRIDEVLELLDRMRGNLCKPDVFAYTAMVKVLVAEGNL 308

Query: 259 ----ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---------- 304
                ++ EM+++ +  D   Y  L+  L    +VG+  +L K++    Y          
Sbjct: 309 DGCLRVWEEMRKDKVEPDVMAYTTLVAALCNGNRVGEGFELFKEMKQKKYLIDRAIYGSL 368

Query: 305 -------------------------RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
                                    RADL IYNS+I G+C VKQ DKAYKLF+VTV + L
Sbjct: 369 IEGFVVNERVGSACDLLKDLMDSGYRADLAIYNSLIEGMCNVKQVDKAYKLFQVTVHESL 428

Query: 340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD 399
            P+F TV P+LV  AEM RMD+F  LL QM+KL F V  DL KFF  ++ K ER+ +AL+
Sbjct: 429 EPNFLTVKPMLVSYAEMKRMDDFCSLLGQMQKLGFPVIDDLSKFFSVMIEKGERLKLALE 488

Query: 400 VFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
           VFE LK KGY S+ IYNILM A+   GEVKKAL LF  ++  N + +S ++S AI C VE
Sbjct: 489 VFEHLKAKGYCSISIYNILMEAIHRTGEVKKALSLFDDIKDSNFKPDSSTYSNAIICFVE 548

Query: 460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
            GD+ EAC C+NKIIEM Q+PSVAAY  L KGLCK  EIDAA+MLVRDCL NV SGP EF
Sbjct: 549 VGDVQEACACYNKIIEMCQLPSVAAYRSLVKGLCKSEEIDAAIMLVRDCLANVTSGPMEF 608

Query: 520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
           KY LTILH C+SG AEK+I+VLNEM QEGC P+EV  SA+ISGMCKHGTLEEARKVF+N+
Sbjct: 609 KYTLTILHACKSGNAEKVIDVLNEMMQEGCTPDEVTYSALISGMCKHGTLEEARKVFSNM 668

Query: 580 RERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLL 630
           RERKLLTEAN IVYDEILIEHMKKKTADLVLSGLKFFGLESKL++KG  LL
Sbjct: 669 RERKLLTEANVIVYDEILIEHMKKKTADLVLSGLKFFGLESKLRSKGSTLL 719

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445049|ref|XP_004140286.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like [Cucumis sativus] gi|449531474|ref|XP_004172711.1| PREDICTED: pentatricopeptide repeat-containing protein At4g20740-like [Cucumis sativus]

 Score =  669 bits (1725), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 366/729 (50%), Positives = 464/729 (63%), Gaps = 107/729 (14%)

Query: 6   PQRPPKPYFFYGHR--KPSQNRPTVYGGLFSNRQSLRNPNSASEPHQ--SP---PFNVQK 58
           PQ+P K YF+YGHR   P Q+RPTVYGG F+NR+SL  P+    PHQ  SP   PF +  
Sbjct: 3   PQKPHKQYFYYGHRHRNPHQHRPTVYGGFFTNRRSLPPPS----PHQPTSPKPQPFLLHN 58

Query: 59  WDPHYLPNQKTQSPPSDPKT--FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRR 116
           WDP  LP+QK  + PS      F     LSPIARFI D FRKNQ QWGP V++EL+KLRR
Sbjct: 59  WDPD-LPSQKRSNLPSSTSDAFFSTSLRLSPIARFIVDVFRKNQNQWGPPVISELNKLRR 117

Query: 117 VTPDLVAEVLKV----ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAAD 172
           VTPDLVAEVLK     ++N  LASKFF+WAGKQKG+ H FASYNA AYCL+R+N FRAAD
Sbjct: 118 VTPDLVAEVLKASHRRDSNSILASKFFYWAGKQKGFHHTFASYNAFAYCLNRHNRFRAAD 177

Query: 173 QVPELMDSQGR--IAEMLEIL-----------------EKMRRNLCKPDVFAYTAMIRVL 213
           Q+PELMDSQG+    +  EIL                 EKM++    P VF Y  ++  L
Sbjct: 178 QIPELMDSQGKPPSEKQFEILIRMHCDANRGLRVYYVYEKMKKFGVVPRVFLYNRILDAL 237

Query: 214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL------------- 260
               +LD  L V+ + +++ +  + + ++ LI GLCK GRV    EL             
Sbjct: 238 VKTDHLDLALTVYRDFQENGLVEESVTFMILIKGLCKAGRVDEMLELLARMRANLCKPDV 297

Query: 261 ----------------------FREMKENGILIDRAIYGVLIEGLVGEGK---------- 288
                                 + EM+ + +  D   YG LI GL   G+          
Sbjct: 298 FAYTAMVKVLASKDNLEGCLRVWDEMRADRVEPDVMAYGTLIIGLCKVGRAQKGYELFQE 357

Query: 289 -------------------------VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
                                    VG ACDL KDLVDSGYRADLGIY+S+I GLC V Q
Sbjct: 358 MKGKRILIDRAIYGTLIEAFVQDEKVGLACDLFKDLVDSGYRADLGIYHSLIKGLCNVNQ 417

Query: 324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKF 383
            DKAYKLF++T+++DL PDF TV P+++   E GRMD+F+KL++ ++KL+FSV   L KF
Sbjct: 418 VDKAYKLFQLTIREDLKPDFETVKPIMMMYVETGRMDDFWKLVSLLQKLEFSVDDVLSKF 477

Query: 384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL 443
             F+V +E++I +ALDVF  +  KGY SV +YN+++GAL   G+  KAL ++  M+  N+
Sbjct: 478 LSFMVEEEDKISVALDVFHGMIDKGYGSVALYNVMVGALHRYGQANKALEIYNDMKNSNI 537

Query: 444 EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM 503
           E NS ++SIA+ C VE G I EAC  HNKI+E+  VPS+AAY  L++GL KI EI+A MM
Sbjct: 538 EPNSTTYSIALLCFVEIGKIQEACASHNKIVELGSVPSIAAYCSLSEGLFKICEINAVMM 597

Query: 504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM 563
           LVRDCL N+ SGP EFKYALTI+H C+SG+AE +I+VL EM  + C P+ V  SAIISGM
Sbjct: 598 LVRDCLANIESGPQEFKYALTIVHACKSGKAEMVIDVLKEMVLQDCVPSSVAYSAIISGM 657

Query: 564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLK 623
            K+GTL+EA+KVF +LRERK LTEAN IV +E+LIEHMKKKTADLV  GLKFF LES+LK
Sbjct: 658 SKYGTLDEAKKVFLHLRERKQLTEANCIVCEELLIEHMKKKTADLVRCGLKFFNLESRLK 717

Query: 624 AKGCKLLSS 632
           AKGC LLS+
Sbjct: 718 AKGCNLLST 726

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075802|ref|XP_002304774.1| predicted protein [Populus trichocarpa] gi|222842206|gb|EEE79753.1| predicted protein [Populus trichocarpa]

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/715 (52%), Positives = 456/715 (63%), Gaps = 98/715 (13%)

Query: 13  YFFYGHRKPSQNRPTVYGGLFSNRQSLRN--PNSASEPHQSPPFNVQKWDPHY-LPNQKT 69
           YFFYGHRKPSQNRP V GGLF+NRQ+++   P +   P +  PF++ KWDP   LP+Q  
Sbjct: 17  YFFYGHRKPSQNRPVVRGGLFTNRQTVKPQPPKNPITPFK--PFDLHKWDPQQNLPHQPQ 74

Query: 70  QSPPSDPKT---FQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAEVL 126
            S P  P++     L + LSPIARFI DAFRKN+ QWGP+VVTEL KLRRVTPDLVAEVL
Sbjct: 75  PSKPQSPRSRHSLALSQRLSPIARFILDAFRKNRNQWGPEVVTELCKLRRVTPDLVAEVL 134

Query: 127 KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR--I 184
           KVENNP LA+KFFHWAGKQKG+KH FASYNA AY L+R+N FRAADQ+PELM++QG+   
Sbjct: 135 KVENNPQLATKFFHWAGKQKGFKHTFASYNAFAYNLNRSNFFRAADQLPELMEAQGKPPT 194

Query: 185 AEMLEIL-----------------EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWE 227
            +  EIL                 +KM +   KP VF Y  ++  L    +LD  L V+E
Sbjct: 195 EKQFEILIRMHSDANRGLRVYYVYQKMVKFGVKPRVFLYNRIMDSLIKTGHLDLALSVYE 254

Query: 228 EMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG 287
           + ++D +  + + Y+ LI GLCK GR+    E+   M+EN    D   Y  ++  L GEG
Sbjct: 255 DFRRDGLVEESVTYMILIKGLCKAGRIEEMMEVLGRMRENLCKPDVFAYTAMVRALAGEG 314

Query: 288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF---------------- 331
            +     + +++   G   D+  Y +++  LC+  + DK Y++F                
Sbjct: 315 NLDACLRVWEEMKRDGVEPDVMAYVTLVTALCKGGRVDKGYEVFKEMKGRRILIDRGIYG 374

Query: 332 ---EVTVQD-----------DLA-----PDFSTVNPLLVCCAEMGRMDNFFKLL------ 366
              E  V D           DL       D    N L+     + R+D   KL       
Sbjct: 375 ILVEAFVADGKIGLACDLLKDLVDSGYRADLRIYNSLIEGFCNVKRVDKAHKLFQVTVQE 434

Query: 367 ----------------AQMEK-------------LKFSVAADLEKFFEFLVGKEERIMMA 397
                           A+M+K             L FSV  DL KFF ++VGK ER MMA
Sbjct: 435 GLERDFKTVNPLLMSYAEMKKMDDFCKLLKQMEKLGFSVFDDLSKFFSYVVGKPERTMMA 494

Query: 398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
           L+VFE+LK KGYSSVPIYNILM ALL IGE+K+AL LFG+M+ LN + +S ++SIAI C 
Sbjct: 495 LEVFEDLKVKGYSSVPIYNILMEALLTIGEMKRALSLFGEMKDLN-KPDSTTYSIAIICF 553

Query: 458 VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT 517
           VE G+I EAC  HNKI+EM  VPSVAAY  L KGLC  GEIDAAMMLVRDCL +V SGP 
Sbjct: 554 VEDGNIQEACVSHNKIVEMFCVPSVAAYCSLAKGLCDNGEIDAAMMLVRDCLASVESGPM 613

Query: 518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFT 577
           EFKY+LTILH C++G AEK+I+VLNEM QEGC PNEVI SAIISGMCKHGT EEARKVFT
Sbjct: 614 EFKYSLTILHACKTGGAEKVIDVLNEMMQEGCTPNEVIYSAIISGMCKHGTFEEARKVFT 673

Query: 578 NLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           +LR+RK+LTEA TIV+DEILIEHMKKKTADLVL+GLKFFGLESKLKA G  LL S
Sbjct: 674 DLRQRKILTEAKTIVFDEILIEHMKKKTADLVLAGLKFFGLESKLKAMGSTLLGS 728

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233383|ref|NP_193806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75211707|sp|Q9SVH3.1|PP328_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20740 gi|5262214|emb|CAB45840.1| putative protein [Arabidopsis thaliana] gi|7268870|emb|CAB79074.1| putative protein [Arabidopsis thaliana] gi|332658957|gb|AEE84357.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 339/722 (46%), Positives = 438/722 (60%), Gaps = 91/722 (12%)

Query: 2   PPQTPQRPPKPYFFYGHRKPSQNRPTVYGGLF--------------SNRQSLRNPN---- 43
           PP    +  KP FF+GHRKPSQNRPTVYGGLF              SN  + R P     
Sbjct: 6   PPNLSDKSLKPNFFHGHRKPSQNRPTVYGGLFSNRQSIPRVSPQPQSNSLAHRTPFDLRK 65

Query: 44  -------------------SASEPHQSPPF---------NVQKWDPHY---LPNQKTQSP 72
                              SA+    SP           N   W P     L   +  +P
Sbjct: 66  WDPETHLPPPSPPSHSTVISAASERLSPIARFVLDAFRKNRNHWGPSVVSELNKLRRVTP 125

Query: 73  PSDPKTFQLQRHLSPIARFI---------------TDAF-----RKNQFQWGPQVVTELS 112
               +  +L    +  A+F                 +AF     R   F+   Q+   + 
Sbjct: 126 SIVAEVLKLGNDAAVAAKFFHWAGKQKGYKHDFAAYNAFAYCLNRNGHFRAADQLPELMD 185

Query: 113 KLRRVTPDLVAEVL---KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFR 169
              R   +   E+L     +N   L   + +   K+ G+K     YN +   L +N  F 
Sbjct: 186 SQGRPPSEKQFEILIRMHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFD 245

Query: 170 AADQVPELMDSQG-------------------RIAEMLEILEKMRRNLCKPDVFAYTAMI 210
            A  V E     G                   RI EMLEIL++MR NLCKPDVFAYTAMI
Sbjct: 246 LALAVYEDFKEDGLVEESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMI 305

Query: 211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL 270
           + L +E NLDA LRVW+EM++D ++ DVMAY TL++GLCK GRV RG+ELF EMK   IL
Sbjct: 306 KTLVSEGNLDASLRVWDEMRRDEIKPDVMAYGTLVVGLCKDGRVERGYELFMEMKGKQIL 365

Query: 271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL 330
           IDR IY VLIEG V +GKV  AC+L +DLVDSGY AD+GIYN++I GLC V Q DKAYKL
Sbjct: 366 IDREIYRVLIEGFVADGKVRSACNLWEDLVDSGYIADIGIYNAVIKGLCSVNQVDKAYKL 425

Query: 331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK 390
           F+V ++++L PDF T++P++V    M R+ +F  +L ++ +L + V+  L +FF+ L   
Sbjct: 426 FQVAIEEELEPDFETLSPIMVAYVVMNRLSDFSNVLERIGELGYPVSDYLTQFFKLLCAD 485

Query: 391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF 450
           EE+  MALDVF  LK KG+ SV +YNILM AL ++G+++K+L LF +MR L  E +S S+
Sbjct: 486 EEKNAMALDVFYILKTKGHGSVSVYNILMEALYKMGDIQKSLSLFYEMRKLGFEPDSSSY 545

Query: 451 SIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG 510
           SIAI C VE GD+  AC  H KIIEMS VPS+AAY  LTKGLC+IGEIDA M+LVR+CLG
Sbjct: 546 SIAICCFVEKGDVKAACSFHEKIIEMSCVPSIAAYLSLTKGLCQIGEIDAVMLLVRECLG 605

Query: 511 NVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLE 570
           NV SGP EFKYALT+ HVC+   AEK+++V++EM QEG   NEVI  AIISGM KHGT++
Sbjct: 606 NVESGPMEFKYALTVCHVCKGSNAEKVMKVVDEMNQEGVFINEVIYCAIISGMSKHGTIK 665

Query: 571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLL 630
            AR+VFT L++RK++TEA+ +VY+E+LIE  KKKTADLVLSG+KFFGLESKL+AKGC+LL
Sbjct: 666 VAREVFTELKKRKVMTEADMVVYEEMLIEQTKKKTADLVLSGIKFFGLESKLRAKGCRLL 725

Query: 631 SS 632
            +
Sbjct: 726 DN 727

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804088|ref|XP_002869928.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315764|gb|EFH46187.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 291/526 (55%), Positives = 372/526 (70%), Gaps = 19/526 (3%)

Query: 126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--- 182
           +  +N   L   + +   K+ G+K     YN +   L +N  F  A  V E     G   
Sbjct: 206 MHADNRRGLRVYYVYEKMKKFGFKPRVFLYNRIMDALVKNGYFDLALAVYEDFKEDGLVE 265

Query: 183 ----------------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVW 226
                           RI EMLEIL++MR NLCKPDVFAYTAMI+ L +E NLDA LRVW
Sbjct: 266 ESTTFMILVKGLCKAGRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVW 325

Query: 227 EEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE 286
           +EMK+D ++ DVMAY TL++GLCK GR+ RG+ELF EMK   ILIDR IY VLIEG V +
Sbjct: 326 DEMKRDEIKPDVMAYGTLVVGLCKDGRIERGYELFMEMKGKQILIDREIYRVLIEGFVAD 385

Query: 287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV 346
           GKV  ACDL KDLVDSGY ADLGIYN++I GLC V Q DKAY LF+V ++++L PDF T+
Sbjct: 386 GKVRSACDLWKDLVDSGYIADLGIYNAVIKGLCSVNQVDKAYNLFQVAIEEELEPDFETL 445

Query: 347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKG 406
           +P++V    M R+ +F  LL ++ +L + V   L +FF+ L   EE+  MALDVF+ LK 
Sbjct: 446 SPIMVAYVVMNRLSDFSNLLERIGELGYPVTDYLTQFFKLLCADEEKRTMALDVFDILKT 505

Query: 407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA 466
           KG+ SV +YNILM  L ++G+++K+L LF +M+    E +S S+SIA+ C V+ GD+ EA
Sbjct: 506 KGHGSVSVYNILMEVLYKMGDIQKSLSLFYEMKEFGFEPDSSSYSIALCCFVDKGDVQEA 565

Query: 467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL 526
           C CH KIIEMS+VPS AAY  LTKGLC+IGEIDA M+LVR+CLGNV SGP EFKY L + 
Sbjct: 566 CSCHEKIIEMSRVPSKAAYLSLTKGLCQIGEIDAVMLLVRECLGNVESGPMEFKYVLRVC 625

Query: 527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT 586
           HVC+   AEK++EV++EM QEG   NEVI  AIISGM KHGT++ AR+VF  L++RK++T
Sbjct: 626 HVCKGSNAEKVMEVVDEMNQEGVSINEVIYCAIISGMSKHGTIKAAREVFAELKKRKVMT 685

Query: 587 EANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
           EA+ +VYDE+LIE  KKKTADLVLSG+KFFGLESKL+AKGC+LL +
Sbjct: 686 EADMVVYDEMLIEQTKKKTADLVLSGIKFFGLESKLRAKGCRLLDN 731

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326493764|dbj|BAJ85344.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 283/723 (39%), Positives = 400/723 (55%), Gaps = 107/723 (14%)

Query: 6   PQRPPKP-------YFFYGHRKPSQNRPTVYGGLFSNRQSLRNPNSASEPHQSP-----P 53
           P  PP P         + G R+PS  RPTV+GGL ++  S  +P     P  SP     P
Sbjct: 4   PSSPPGPAHCHRRHTIYNGCRRPSPYRPTVHGGLITH-PSATSPGPRFSPSPSPAATTAP 62

Query: 54  FNVQKWDPHYLPNQKTQSPPSDPKTFQLQRHLSPIARFITDAFRKNQFQWGPQVVTELSK 113
           F++  WDP          P     T    R LSP+ARF+ +A R++Q +WGP V+ +LSK
Sbjct: 63  FHLPDWDPSSPSQPPRSPPTPSHSTSASSRRLSPLARFLLEALRRHQ-RWGPPVIADLSK 121

Query: 114 LRRVTPDLVAEVL--KVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
           LRRV P LVAEVL       P LA  FFHWAG+QKG++H F +++ALA  LS   L  AA
Sbjct: 122 LRRVPPTLVAEVLCAHPPPPPPLALPFFHWAGRQKGFRHCFPAFHALACLLSAAGLPAAA 181

Query: 172 DQVPELMDSQGRIAEM----------------LEILEKMRR-----------NLC----- 199
           DQ+P+L+ S G+                    L  L  +RR           ++C     
Sbjct: 182 DQLPDLIRSHGKPVSHPQLTLLVRLHTAARRPLRALYTLRRFRHEFSVQPQVHVCNRVLG 241

Query: 200 -----------------------KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA 236
                                  +P   ++  ++R L  E   +  L +   M+ ++   
Sbjct: 242 ALTAAGYVEDALKLFDEMAESGIRPMPVSFAIIVRALGQEGKPERILEMIGRMRDEVCRP 301

Query: 237 DVMAYVTLIM-----------------------------------GLCKGGRVVRGHELF 261
           DV  Y TL+                                    GLC  G V +  +LF
Sbjct: 302 DVFVYTTLVKTMVRRGHMEGCIRVWEEMGRDGVEPDSMAYATMVEGLCNAGMVEKAAKLF 361

Query: 262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV 321
             M++ G+L+DR +Y  L+ G V  G+VG  C +LKD+VD+GYRADL  YN +IGGLC +
Sbjct: 362 EGMRKKGLLVDRIVYASLVHGYVAAGRVGDGCRVLKDMVDAGYRADLKTYNILIGGLCGI 421

Query: 322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE 381
              DKA+K+F++ +Q+DL P   TV+ LLVC A+ G M NFF L+ ++ +L       L 
Sbjct: 422 GLEDKAHKMFQIVLQEDLVPSAETVSQLLVCYADNGDMVNFFGLVDKLVELSLPAVEFLV 481

Query: 382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL 441
            F      K+ R + A++VF+ L+ KGY SV  YNIL+  LL+I E +KAL LF +M+  
Sbjct: 482 DFLRLFASKDGRELKAVEVFKTLRQKGYCSVNFYNILIENLLKIKEREKALLLFEEMKDS 541

Query: 442 -NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA 500
            + E  S ++S+ I C V+ G+I EAC C+N +++   +PS++AY  L KGLCKIGEI+A
Sbjct: 542 DDCEPESCTYSLMIPCFVDEGNIEEACSCYNSMMKAEWIPSLSAYRSLVKGLCKIGEINA 601

Query: 501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII 560
           A+ LV DCLGNV +GP EFKYALT++  CRS + E++++V+ EM + G    E+I SA+I
Sbjct: 602 AVSLVSDCLGNVENGPMEFKYALTVIEACRSKDPERVMKVVVEMIELGYLVEELIFSAVI 661

Query: 561 SGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLES 620
            G CK+ T   AR+VF+ + +R +++EAN IVY+++L EH+KK TADLV+SGLKFF LES
Sbjct: 662 YGFCKYATSTGAREVFSVMADRDIISEANFIVYEDMLNEHLKKVTADLVISGLKFFNLES 721

Query: 621 KLK 623
           KLK
Sbjct: 722 KLK 724

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	632
TAIR|locus:2121529	727	EMB3131 "EMBRYO DEFECTIVE 3131	0.713	0.620	0.618	6.4e-147
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.689	0.583	0.263	7.2e-34
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.794	0.548	0.237	1.7e-33
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.637	0.552	0.272	3.3e-33
TAIR|locus:2098495	880	AT3G07290 "AT3G07290" [Arabido	0.607	0.436	0.269	4.5e-33
TAIR|locus:2015218	590	AT1G63070 [Arabidopsis thalian	0.642	0.688	0.255	1.2e-32
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.640	0.643	0.248	1.9e-32
TAIR|locus:2093472	642	AT3G16010 [Arabidopsis thalian	0.841	0.828	0.237	1.8e-31
TAIR|locus:2195047	621	AT1G12620 [Arabidopsis thalian	0.625	0.636	0.268	1.9e-31
TAIR|locus:2116772	1112	PGR3 "AT4G31850" [Arabidopsis	0.688	0.391	0.238	2.1e-31

TAIR|locus:2121529 EMB3131 "EMBRYO DEFECTIVE 3131" [Arabidopsis thaliana (taxid:3702)]

 Score = 1435 (510.2 bits), Expect = 6.4e-147, P = 6.4e-147
 Identities = 279/451 (61%), Positives = 355/451 (78%)

Query:   182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
             GRI EMLEIL++MR NLCKPDVFAYTAMI+ L +E NLDA LRVW+EM++D ++ DVMAY
Sbjct:   277 GRIEEMLEILQRMRENLCKPDVFAYTAMIKTLVSEGNLDASLRVWDEMRRDEIKPDVMAY 336

Query:   242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
              TL++GLCK GRV RG+ELF EMK   ILIDR IY VLIEG V +GKV  AC+L +DLVD
Sbjct:   337 GTLVVGLCKDGRVERGYELFMEMKGKQILIDREIYRVLIEGFVADGKVRSACNLWEDLVD 396

Query:   302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
             SGY AD+GIYN++I GLC V Q DKAYKLF+V ++++L PDF T++P++V    M R+ +
Sbjct:   397 SGYIADIGIYNAVIKGLCSVNQVDKAYKLFQVAIEEELEPDFETLSPIMVAYVVMNRLSD 456

Query:   362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA 421
             F  +L ++ +L + V+  L +FF+ L   EE+  MALDVF  LK KG+ SV +YNILM A
Sbjct:   457 FSNVLERIGELGYPVSDYLTQFFKLLCADEEKNAMALDVFYILKTKGHGSVSVYNILMEA 516

Query:   422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS 481
             L ++G+++K+L LF +MR L  E +S S+SIAI C VE GD+  AC  H KIIEMS VPS
Sbjct:   517 LYKMGDIQKSLSLFYEMRKLGFEPDSSSYSIAICCFVEKGDVKAACSFHEKIIEMSCVPS 576

Query:   482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVL 541
             +AAY  LTKGLC+IGEIDA M+LVR+CLGNV SGP EFKYALT+ HVC+   AEK+++V+
Sbjct:   577 IAAYLSLTKGLCQIGEIDAVMLLVRECLGNVESGPMEFKYALTVCHVCKGSNAEKVMKVV 636

Query:   542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM 601
             +EM QEG   NEVI  AIISGM KHGT++ AR+VFT L++RK++TEA+ +VY+E+LIE  
Sbjct:   637 DEMNQEGVFINEVIYCAIISGMSKHGTIKVAREVFTELKKRKVMTEADMVVYEEMLIEQT 696

Query:   602 KKKTADLVLSGLKFFGLESKLKAKGCKLLSS 632
             KKKTADLVLSG+KFFGLESKL+AKGC+LL +
Sbjct:   697 KKKTADLVLSGIKFFGLESKLRAKGCRLLDN 727

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 7.2e-34, P = 7.2e-34
 Identities = 118/447 (26%), Positives = 210/447 (46%)

Query:   180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
             S+  I+    + ++M  +   P+VF Y  +IR      N+D  L ++++M+      +V+
Sbjct:   182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241

Query:   240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
              Y TLI G CK  ++  G +L R M   G+  +   Y V+I GL  EG++ +   +L ++
Sbjct:   242 TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301

Query:   300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM 359
                GY  D   YN++I G C+   F +A  +    ++  L P   T   L+    + G M
Sbjct:   302 NRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361

Query:   360 DNFFKLLAQMEKLKFSVAADLEKFFEFLV-GKEERIMM--ALDVFEELKGKGYS-SVPIY 415
             +   + L QM +++  +  + E+ +  LV G  ++  M  A  V  E+   G+S SV  Y
Sbjct:   362 NRAMEFLDQM-RVR-GLCPN-ERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418

Query:   416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             N L+      G+++ A+ +   M+   L  + +S+S  +     S D+ EA     +++E
Sbjct:   419 NALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVE 478

Query:   476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                 P    Y+ L +G C+      A  L  + L  V   P EF Y   I   C  G+ E
Sbjct:   479 KGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML-RVGLPPDEFTYTALINAYCMEGDLE 537

Query:   536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
             K +++ NEM ++G  P+ V  S +I+G+ K     EA+++   L   + +   + + Y  
Sbjct:   538 KALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVP--SDVTY-H 594

Query:   596 ILIEHMKKKTADLVLSGLKFFGLESKL 622
              LIE+        V+S +K F ++  +
Sbjct:   595 TLIENCSNIEFKSVVSLIKGFCMKGMM 621

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 1.7e-33, P = 1.7e-33
 Identities = 124/523 (23%), Positives = 235/523 (44%)

Query:   112 SKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAA 171
             S +  ++P  V+ +  ++ +P  A  F HW  +   YKH+  SY +L   L  N      
Sbjct:    83 SMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGYVGVV 142

Query:   172 DQVPELM----DSQGRIAEMLEILEKMRRN-----LCKPDVFAYTAMIRVLAAERNLDAC 222
              ++  LM    DS G    +L++  KM ++       K  +  Y  ++  LA    +D  
Sbjct:   143 FKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEM 202

Query:   223 LRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG 282
              +V+ EM +D V  ++  Y  ++ G CK G V   ++   ++ E G+  D   Y  LI G
Sbjct:   203 KQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMG 262

Query:   283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
                   +  A  +  ++   G R +   Y  +I GLC  ++ D+A  LF     D+  P 
Sbjct:   263 YCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPT 322

Query:   343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL--VGKEERIMMALDV 400
               T   L+       R      L+ +ME+    +  ++  +   +  +  + +   A ++
Sbjct:   323 VRTYTVLIKSLCGSERKSEALNLVKEMEET--GIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query:   401 FEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE 459
               ++  KG   +V  YN L+    + G ++ A+ +   M    L  N+ +++  I+ + +
Sbjct:   381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query:   460 SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF 519
             S ++ +A    NK++E   +P V  YN L  G C+ G  D+A  L+   + +    P ++
Sbjct:   441 S-NVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL-SLMNDRGLVPDQW 498

Query:   520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL 579
              Y   I  +C+S   E+  ++ + + Q+G  PN V+ +A+I G CK G ++EA  +   +
Sbjct:   499 TYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKM 558

Query:   580 RERKLLTEANTIVYDEI---LIEHMKKKTADLVLSGLKFFGLE 619
               +  L   N++ ++ +   L    K K A L+   +   GL+
Sbjct:   559 LSKNCLP--NSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQ 599

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 115/422 (27%), Positives = 201/422 (47%)

Query:   183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
             R+ E L++LE+M    C PD   +  +I  L     ++   ++   M       D + Y 
Sbjct:   267 RVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYG 326

Query:   243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
              L+ GLCK GRV    +LF  + +  I+I    +  LI G V  G++  A  +L D+V S
Sbjct:   327 YLMNGLCKIGRVDAAKDLFYRIPKPEIVI----FNTLIHGFVTHGRLDDAKAVLSDMVTS 382

Query:   303 -GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN 361
              G   D+  YNS+I G  +      A ++          P+  +   L+    ++G++D 
Sbjct:   383 YGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDE 442

Query:   362 FFKLLAQM--EKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEELKGKGYS-SVPIY 415
              + +L +M  + LK +        F  L+    KE RI  A+++F E+  KG    V  +
Sbjct:   443 AYNVLNEMSADGLKPNTVG-----FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497

Query:   416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             N L+  L E+ E+K AL+L   M    +  N+++++  I   +  G+I EA +  N+++ 
Sbjct:   498 NSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVF 557

Query:   476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                      YN L KGLC+ GE+D A  L    L +    P+     + I  +CRSG  E
Sbjct:   558 QGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRD-GHAPSNISCNILINGLCRSGMVE 616

Query:   536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDE 595
             + +E   EM   G  P+ V  +++I+G+C+ G +E+   +F  L+   +    +T+ ++ 
Sbjct:   617 EAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI--PPDTVTFNT 674

Query:   596 IL 597
             ++
Sbjct:   675 LM 676

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098495 AT3G07290 "AT3G07290" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 4.5e-33, Sum P(2) = 4.5e-33
 Identities = 106/393 (26%), Positives = 186/393 (47%)

Query:   174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
             +  L D +G I +   + ++M    CKP+V  YT +I  L  +  ++    V  +M KD 
Sbjct:   308 IKALCD-RGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDR 366

Query:   234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
             +   V+ Y  LI G CK GRVV   EL   M++     +   +  L+EGL   GK  KA 
Sbjct:   367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426

Query:   294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
              LLK ++D+G   D+  YN +I GLCR    + AYKL       D+ PD  T   ++   
Sbjct:   427 HLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINAF 486

Query:   354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSS 411
              + G+ D     L  M  L+  ++ D       + G  K  +   AL + E L      +
Sbjct:   487 CKQGKADVASAFLGLM--LRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILT 544

Query:   412 VP-IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
              P   N+++  L +  +VK+ L + GK+  L L  + ++++  +   + SGDI  +    
Sbjct:   545 TPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRIL 604

Query:   471 NKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC 529
              +++++S  +P+V  Y  +  GLC+ G ++ A  L+   + +    P    Y + +    
Sbjct:   605 -ELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLL-SAMQDSGVSPNHVTYTVMVKGYV 662

Query:   530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG 562
              +G+ ++ +E +  M + G   N+ I S+++ G
Sbjct:   663 NNGKLDRALETVRAMVERGYELNDRIYSSLLQG 695

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015218 AT1G63070 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 1.2e-32, P = 1.2e-32
 Identities = 106/415 (25%), Positives = 193/415 (46%)

Query:   181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
             + +++  L IL KM +    P +    +++        +   + + ++M +   + D + 
Sbjct:   123 RSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVT 182

Query:   241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
             + TL+ GL +  +      L   M   G   D   YG +I GL   G+   A +LL  + 
Sbjct:   183 FTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKME 242

Query:   301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD 360
                  AD+ IYN+II GLC+ K  D A+ LF       + PD  T NPL+ C    GR  
Sbjct:   243 KGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWS 302

Query:   361 NFFKLLAQMEKLKFSVAADLEKFFEFLVG---KEERIMMALDVFEEL-KGKG-YSSVPIY 415
             +  +LL+ M  L+ ++  DL  FF  L+    KE +++ A  +++E+ K K  +  V  Y
Sbjct:   303 DASRLLSDM--LEKNINPDLV-FFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAY 359

Query:   416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE 475
             N L+    +   V++ + +F +M    L  N+++++  I    ++ D   A     +++ 
Sbjct:   360 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 419

Query:   476 MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE 535
                 P +  YN L  GLC  G ++ A++ V + +           Y   I  +C++G+ E
Sbjct:   420 DGVHPDIMTYNILLDGLCNNGNVETALV-VFEYMQKRDMKLDIVTYTTMIEALCKAGKVE 478

Query:   536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
                ++   ++ +G  PN V  + ++SG C+ G  EEA  +F  ++E   L  + T
Sbjct:   479 DGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGT 533

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 1.9e-32, P = 1.9e-32
 Identities = 102/411 (24%), Positives = 200/411 (48%)

Query:   183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV 242
             RI+E + ++++M     +P+   +  +I  L         + + + M     + D+  Y 
Sbjct:   165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 224

Query:   243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS 302
             T++ GLCK G +     L ++M++  I  D  IY  +I+ L     V  A +L  ++ + 
Sbjct:   225 TVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNK 284

Query:   303 GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF 362
             G R ++  YNS+I  LC   ++  A +L    ++  + P+  T + L+    + G++   
Sbjct:   285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query:   363 FKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKG-YSSVPIYNILM 419
              KL  +M  +K S+  D+  +   + G    +R+  A  +FE +  K  + +V  YN L+
Sbjct:   345 EKLYDEM--IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLI 402

Query:   420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
                 +   V++ + LF +M    L  N+++++  IQ   ++GD   A +   K++     
Sbjct:   403 KGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVP 462

Query:   480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
             P +  Y+ L  GLCK G+++ A++ V + L      P  + Y + I  +C++G+ E   +
Sbjct:   463 PDIITYSILLDGLCKYGKLEKALV-VFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWD 521

Query:   540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             +   ++ +G  PN +I + +ISG C+ G  EEA  +F  ++E   L  + T
Sbjct:   522 LFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2093472 AT3G16010 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 1.8e-31, P = 1.8e-31
 Identities = 136/572 (23%), Positives = 248/572 (43%)

Query:    34 SNRQSLRNPNSASEPHQSPPFNVQKWD---PHYLPNQKTQSPPSDPKTFQLQRHLSPIAR 90
             S R      + +S PH S  F   + +      +PN +    P +   ++L R   P  R
Sbjct:     5 SARSGSAKRSISSLPHLSQRFKQTENEIVQMFSVPNHEESEKPQEK--WKLSRK-DPSVR 61

Query:    91 FITDAFRK--NQFQWGPQVVTELSKLR-RVTPDLVAEVLKVENNPTLASKFFHWAGKQKG 147
              + + F +    F+WGP     L  L+ +V   LV  +L+++    +  +FF WAGK++ 
Sbjct:    62 MLDERFIRIVKIFKWGPDAEKALEVLKLKVDHRLVRSILEIDVEINVKIQFFKWAGKRRN 121

Query:   148 YKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNL---CKPDVF 204
             ++H+ ++Y  L  CL    L+                 EM   ++++ RN      P V 
Sbjct:   122 FQHDCSTYMTLIRCLEEARLY----------------GEMYRTIQEVVRNTYVSVSPAVL 165

Query:   205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM 264
             +   +++ L   + +   L V+ + K    +     Y ++I+ L + G+  + HE++ EM
Sbjct:   166 S--ELVKALGRAKMVSKALSVFYQAKGRKCKPTSSTYNSVILMLMQEGQHEKVHEVYTEM 223

Query:   265 -KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ 323
               E     D   Y  LI      G+   A  L  ++ D+  +    IY +++G   +V +
Sbjct:   224 CNEGDCFPDTITYSALISSYEKLGRNDSAIRLFDEMKDNCMQPTEKIYTTLLGIYFKVGK 283

Query:   324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD---L 380
              +KA  LFE   +   +P   T   L+    + GR+D  +     M  L+  +  D   L
Sbjct:   284 VEKALDLFEEMKRAGCSPTVYTYTELIKGLGKAGRVDEAYGFYKDM--LRDGLTPDVVFL 341

Query:   381 EKFFEFLVGKEERIMMALDVFEEL-KGKGYSSVPIYNILMGALLEI-GEVKKALYLFGKM 438
                   L GK  R+    +VF E+   +   +V  YN ++ AL E    V +    F KM
Sbjct:   342 NNLMNIL-GKVGRVEELTNVFSEMGMWRCTPTVVSYNTVIKALFESKAHVSEVSSWFDKM 400

Query:   439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
             +  ++  +  ++SI I  + ++  + +A     ++ E    P  AAY  L   L K    
Sbjct:   401 KADSVSPSEFTYSILIDGYCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRY 460

Query:   499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA 558
             +AA  L ++   N  +  +   YA+ I H  + G+  + +++ NEM  +G  P+    +A
Sbjct:   461 EAANELFKELKENFGNVSSRV-YAVMIKHFGKCGKLSEAVDLFNEMKNQGSGPDVYAYNA 519

Query:   559 IISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
             ++SGM K G + EA  +   + E     + N+
Sbjct:   520 LMSGMVKAGMINEANSLLRKMEENGCRADINS 551

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 1.9e-31, P = 1.9e-31
 Identities = 108/402 (26%), Positives = 190/402 (47%)

Query:   174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL 233
             V ++M   G+ A  +E+L KM     K D   Y+ +I  L  + +LD    ++ EM+   
Sbjct:   218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query:   234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC 293
              +AD++ Y TLI G C  GR   G +L R+M +  I  D   +  LI+  V EGK+ +A 
Sbjct:   278 FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAE 337

Query:   294 DLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCC 353
             +L K+++  G   D   Y S+I G C+  Q DKA  + ++ V     P+  T N L+   
Sbjct:   338 ELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGY 397

Query:   354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYS- 410
              +   +D+  +L  +M  L+  V AD   +   + G  E  ++ +A ++F+E+  +    
Sbjct:   398 CKANLIDDGLELFRKMS-LR-GVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRP 455

Query:   411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH 470
              +  Y IL+  L + GE +KAL +F K+    +E++   ++I I     +  + +A +  
Sbjct:   456 DIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 515

Query:   471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR 530
               +      P V  YN +  GLCK G +  A +L R  +      P    Y + I     
Sbjct:   516 CSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK-MEEDGHSPNGCTYNILIRAHLG 574

Query:   531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
              G+A K  +++ E+ + G   +      ++  M   G L+++
Sbjct:   575 EGDATKSAKLIEEIKRCGFSVDASTVKMVVD-MLSDGRLKKS 615

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2116772 PGR3 "AT4G31850" [Arabidopsis thaliana (taxid:3702)]

 Score = 376 (137.4 bits), Expect = 2.1e-31, P = 2.1e-31
 Identities = 107/448 (23%), Positives = 210/448 (46%)

Query:   168 FRAADQV-PELMDSQGR---IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACL 223
             FR + Q    LM   G+   I  ++ +L++M     KP+V+ +T  IRVL     ++   
Sbjct:   219 FRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAY 278

Query:   224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
              + + M  +    DV+ Y  LI  LC   ++    E+F +MK      DR  Y  L++  
Sbjct:   279 EILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRF 338

Query:   284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF 343
                  +        ++   G+  D+  +  ++  LC+   F +A+   +V     + P+ 
Sbjct:   339 SDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNL 398

Query:   344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE 403
              T N L+     + R+D+  +L   ME L     A     F    GK    + AL+ FE+
Sbjct:   399 HTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEK 458

Query:   404 LKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD 462
             +K KG + ++   N  + +L + G  ++A  +F  ++ + L  +S+++++ ++C+ + G+
Sbjct:   459 MKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGE 518

Query:   463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM-MLVRDCLGNVASGPTEFKY 521
             I EA +  ++++E    P V   N L   L K   +D A  M +R  +  +   PT   Y
Sbjct:   519 IDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMR--MKEMKLKPTVVTY 576

Query:   522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
                +  + ++G+ ++ IE+   M Q+GCPPN +  + +   +CK+  +  A K+   + +
Sbjct:   577 NTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMD 636

Query:   582 RKLLTEA---NTIVYDEILIEHMKKKTA 606
                + +    NTI++   L+++ + K A
Sbjct:   637 MGCVPDVFTYNTIIFG--LVKNGQVKEA 662

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0000272 "polysaccharide catabolic process" evidence=RCA

GO:0005982 "starch metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SVH3	PP328_ARATH	No assigned EC number	0.4695	0.9984	0.8679	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	632
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-22
pfam13041	50	pfam13041, PPR_2, PPR repeat family	9e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-07
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-05
pfam01535	31	pfam01535, PPR, PPR repeat	9e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  101 bits (253), Expect = 3e-22
 Identities = 111/539 (20%), Positives = 204/539 (37%), Gaps = 124/539 (23%)

Query: 105 PQVVTELSKLRRVTPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSR 164
              V  L K      + ++   K  NN    ++    +          AS       L+ 
Sbjct: 308 LPNVKGLRKGVSSATNSLSLDKK--NNGVKDAELPGQS------SGQAASDVEEENSLAA 359

Query: 165 NNL-FRAADQVPELMD------SQGRIAEMLEILEKMRR---------------NLCK-- 200
            N       + PE +D        GRI + +++LE M +                 CK  
Sbjct: 360 YNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ 419

Query: 201 ---PDVFAYTAMIR------------VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLI 245
               + F +  +IR            V A+ +++D  LRV   +++  ++AD   Y TLI
Sbjct: 420 RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLI 479

Query: 246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR 305
               K G+V    E+F EM   G+  +   +G LI+G    G+V KA      +     +
Sbjct: 480 STCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539

Query: 306 ADLGIYNSIIGGLCRVKQFDKAYK-LFEVTVQDD-LAPDFSTVNPLLVCCAEMGRMDNFF 363
            D  ++N++I    +    D+A+  L E+  +   + PD  TV  L+  CA  G++D   
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599

Query: 364 KLLAQMEK----------------------LKF--SVAADL--------EKFFEFLV--- 388
           ++   + +                        F  S+  D+        E FF  LV   
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659

Query: 389 GKEERIMMALDVFEELKGKGY--SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN 446
           G    +  A ++ ++ + +G    +V  Y+ LMGA       KKAL L+  ++ + L   
Sbjct: 660 GHAGDLDKAFEILQDARKQGIKLGTVS-YSSLMGACSNAKNWKKALELYEDIKSIKLR-- 716

Query: 447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR 506
                                            P+V+  N L   LC+  ++  A+ ++ 
Sbjct: 717 ---------------------------------PTVSTMNALITALCEGNQLPKALEVLS 743

Query: 507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK 565
           + +  +   P    Y++ ++   R  +A+  +++L++  ++G  PN V+C  I  G+C 
Sbjct: 744 E-MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 57.0 bits (139), Expect = 9e-11
 Identities = 18/50 (36%), Positives = 28/50 (56%)

Query: 201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK 250
           PDV  Y  +I     +  ++  L+++ EMKK  ++ +V  Y  LI GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.1 bits (143), Expect = 6e-09
 Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 2/158 (1%)

Query: 182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAY 241
           G + +  EIL+  R+   K    +Y++++   +  +N    L ++E++K   +   V   
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722

Query: 242 VTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD 301
             LI  LC+G ++ +  E+  EMK  G+  +   Y +L+     +       DLL    +
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL 339
            G + +L +   I  GLC +++F+KA  L E  V  D 
Sbjct: 783 DGIKPNLVMCRCIT-GLC-LRRFEKACALGEPVVSFDS 818

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 23/47 (48%), Positives = 30/47 (63%)

Query: 237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL 283
           DV+ Y TLI G CK G+V    +LF EMK+ GI  +   Y +LI+GL
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 54.5 bits (131), Expect = 1e-07
 Identities = 90/445 (20%), Positives = 167/445 (37%), Gaps = 67/445 (15%)

Query: 180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM 239
           S G++ + L++LE M+      D  AY A+ R+   +R ++   RV            V 
Sbjct: 63  SHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVR 122

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL 299
               ++    + G +V    +F +M E                                 
Sbjct: 123 LGNAMLSMFVRFGELVHAWYVFGKMPER-------------------------------- 150

Query: 300 VDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA----- 354
                  DL  +N ++GG  +   FD+A  L+   +   + PD  T   +L  C      
Sbjct: 151 -------DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203

Query: 355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI 414
             GR     ++ A + +  F +  D+      +  K   ++ A  VF+ +  +   S   
Sbjct: 204 ARGR-----EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS--- 255

Query: 415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII 474
           +N ++    E GE  + L LF  MR L+++ + ++ +  I      GD     E H  ++
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315

Query: 475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL---TILHVC-R 530
           +      V+  N L +    +G    A          V S   E K A+    ++    +
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEA--------EKVFSR-METKDAVSWTAMISGYEK 366

Query: 531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANT 590
           +G  +K +E    M Q+   P+E+  ++++S     G L+   K+   L ERK L  +  
Sbjct: 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH-ELAERKGLI-SYV 424

Query: 591 IVYDEILIEHMKKKTADLVLSGLKF 615
           +V + ++  + K K  D  L     
Sbjct: 425 VVANALIEMYSKCKCIDKALEVFHN 449

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 97/470 (20%), Positives = 180/470 (38%), Gaps = 84/470 (17%)

Query: 181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRV------LAAERNLDA-CLRVWEEMKKDL 233
            G   E L +  +M     +PDV+ +  ++R       LA  R + A  +R   E+  D+
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224

Query: 234 VEADVMAYV------------------------TLIMGLCKGGRVVRGHELFREMKENGI 269
           V A +  YV                         +I G  + G  + G ELF  M+E  +
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284

Query: 270 LIDRAIYGVLIE--GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII------------ 315
             D      +I    L+G+ ++G+  ++   +V +G+  D+ + NS+I            
Sbjct: 285 DPDLMTITSVISACELLGDERLGR--EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 316 -----GGLCR------------VKQF--DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
                    +             K    DKA + + +  QD+++PD  T+  +L  CA +
Sbjct: 343 EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402

Query: 357 GRMDNFFKLLAQMEKLKFS----VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV 412
           G +D   KL    E+        VA  L + +     K + I  AL+VF  +  K   S 
Sbjct: 403 GDLDVGVKLHELAERKGLISYVVVANALIEMY----SKCKCIDKALEVFHNIPEKDVIS- 457

Query: 413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK 472
             +  ++  L       +AL  F +M  L L+ NS++   A+      G ++   E H  
Sbjct: 458 --WTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAH 514

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG 532
           ++           N L     + G ++ A         +V S      + + +      G
Sbjct: 515 VLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS------WNILLTGYVAHG 568

Query: 533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER 582
           +    +E+ N M + G  P+EV   +++    + G + +  + F ++ E+
Sbjct: 569 KGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 46.6 bits (112), Expect = 4e-07
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 36/86 (41%)

Query: 480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIE 539
           P V  YN L  G CK G+++ A+                                    +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEAL------------------------------------K 24

Query: 540 VLNEMTQEGCPPNEVICSAIISGMCK 565
           + NEM + G  PN    S +I G+CK
Sbjct: 25  LFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 52.2 bits (125), Expect = 6e-07
 Identities = 85/407 (20%), Positives = 152/407 (37%), Gaps = 60/407 (14%)

Query: 182 GRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMA 240
           GR  E LE+ E +            Y A++    A +++     V+  ++    E D   
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160

Query: 241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV 300
              +++   K G ++    LF EM E  +      +G +I GLV  G   +A  L +++ 
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLAS----WGTIIGGLVDAGNYREAFALFREMW 216

Query: 301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA-EMGRM 359
           + G                     D   + F V ++       +     L CC  + G +
Sbjct: 217 EDGS--------------------DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256

Query: 360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM 419
            + F   A ++   +S   D+E               A  VF+ +  K  ++V   ++L 
Sbjct: 257 GDTFVSCALIDM--YSKCGDIED--------------ARCVFDGMPEK--TTVAWNSMLA 298

Query: 420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV 479
           G  L  G  ++AL L+ +MR   + ++  +FSI I+       +  A + H  +I     
Sbjct: 299 GYALH-GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFP 357

Query: 480 PSVAAYNCLTKGLCKIGEIDAA-----MMLVRDCLGNVASGPTEFKYALTILHVCRSGEA 534
             + A   L     K G ++ A      M  +    N+ S      +   I      G  
Sbjct: 358 LDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLIS------WNALIAGYGNHGRG 407

Query: 535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE 581
            K +E+   M  EG  PN V   A++S     G  E+  ++F ++ E
Sbjct: 408 TKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 43.1 bits (103), Expect = 5e-06
 Identities = 9/29 (31%), Positives = 18/29 (62%)

Query: 548 GCPPNEVICSAIISGMCKHGTLEEARKVF 576
           G  P+ V  + +I G+C+ G ++EA ++ 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELL 30

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.4 bits (101), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH 457
            V  YN L+    + G+V++AL LF +M+   ++ N  ++SI I   
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR 320
           D   Y  LI+G   +GKV +A  L  ++   G + ++  Y+ +I GLC+
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 46.8 bits (111), Expect = 3e-05
 Identities = 30/169 (17%), Positives = 68/169 (40%)

Query: 188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG 247
           L I + M++   KPD   ++A++ V     +LD    + ++ +K  ++   ++Y +L+  
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD 307
                   +  EL+ ++K   +    +    LI  L    ++ KA ++L ++   G   +
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753

Query: 308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM 356
              Y+ ++    R    D    L     +D + P+      +   C   
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRR 802

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.2 bits (98), Expect = 4e-05
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 311 YNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCC 353
           YN++I G C+  + ++A KLF    +  + P+  T + L+   C
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 20/63 (31%)

Query: 154 SYNAL--AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIR 211
           +YN L   YC                   +G++ E L++  +M++   KP+V+ Y+ +I 
Sbjct: 5   TYNTLIDGYC------------------KKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

Query: 212 VLA 214
            L 
Sbjct: 47  GLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 21/34 (61%), Positives = 23/34 (67%)

Query: 239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILID 272
           + Y TLI GLCK GRV    ELF+EMKE GI  D
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.6 bits (94), Expect = 9e-05
 Identities = 16/32 (50%), Positives = 21/32 (65%)

Query: 234 VEADVMAYVTLIMGLCKGGRVVRGHELFREMK 265
           ++ DV+ Y TLI GLC+ GRV    EL  EM+
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 9e-05
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 240 AYVTLIMGLCKGGRVVRGHELFREMKENGI 269
            Y +LI G CK G++    ELF+EMKE G+
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)

Query: 551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI 598
           P+ V  + +I G CK G +EEA K+F  +++R +  + N   Y  ILI
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI--KPNVYTYS-ILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.9 bits (87), Expect = 7e-04
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 302 SGYRADLGIYNSIIGGLCRVKQFDKAYKLFE 332
            G + D+  YN++I GLCR  + D+A +L +
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.4 bits (97), Expect = 0.001
 Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR 256
           N  + DV ++  ++    A       + ++  M +  V  D + +++L+    + G V +
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607

Query: 257 GHELFREMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII 315
           G E F  M+E   I  +   Y  +++ L   GK+ +A + +  +       D  ++ +++
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALL 664

Query: 316 GGLCRVKQ 323
              CR+ +
Sbjct: 665 NA-CRIHR 671

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS 447
            YN L+  L + G V++AL LF +M+   +E + 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 524 TILHVC-RSGEAEKIIEVLNEMTQEGCP--PNEVICSAIISGMCKHGTLEEARKVFTNLR 580
            ++  C +SG  ++  +VL EM  E  P  P+ +   A++      G ++ A++V+  + 
Sbjct: 547 ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIH 606

Query: 581 E 581
           E
Sbjct: 607 E 607

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD 342
            YN++I GLC+  + ++A +LF+   +  + PD
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	632
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.93
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.87
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.86
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.83
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.82
PRK14574	822	hmsH outer membrane protein; Provisional	99.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.78
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.77
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.73
KOG2003	840	consensus TPR repeat-containing protein [General f	99.73
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.72
KOG2076	895	consensus RNA polymerase III transcription factor	99.71
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.63
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.63
KOG2076	895	consensus RNA polymerase III transcription factor	99.63
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.61
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.58
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.57
KOG1126	638	consensus DNA-binding cell division cycle control	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.56
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.55
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.54
KOG1126	638	consensus DNA-binding cell division cycle control	99.52
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.51
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.51
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.51
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.5
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.48
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.48
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.46
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.41
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.4
PRK12370	553	invasion protein regulator; Provisional	99.37
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.35
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.34
PF13041	50	PPR_2: PPR repeat family	99.32
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.32
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.32
PRK12370	553	invasion protein regulator; Provisional	99.32
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.31
KOG1129	478	consensus TPR repeat-containing protein [General f	99.3
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.3
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.3
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.3
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.29
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.27
PF13041	50	PPR_2: PPR repeat family	99.26
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.25
KOG1129	478	consensus TPR repeat-containing protein [General f	99.25
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.18
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.16
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.16
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.12
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.09
PRK11189	296	lipoprotein NlpI; Provisional	99.06
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.06
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.04
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.04
PRK11189	296	lipoprotein NlpI; Provisional	99.03
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.01
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.01
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.99
PRK04841	903	transcriptional regulator MalT; Provisional	98.94
PRK04841	903	transcriptional regulator MalT; Provisional	98.94
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.93
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.91
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.84
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.84
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.81
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.8
KOG1125	579	consensus TPR repeat-containing protein [General f	98.8
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.79
PLN02789	320	farnesyltranstransferase	98.79
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.79
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.78
PLN02789	320	farnesyltranstransferase	98.77
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.77
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.76
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.73
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.71
KOG1125	579	consensus TPR repeat-containing protein [General f	98.71
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.7
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.7
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.69
PF12854	34	PPR_1: PPR repeat	98.69
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.64
PF12854	34	PPR_1: PPR repeat	98.64
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.57
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.55
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.55
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.48
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.48
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.45
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.42
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.41
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.4
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.38
PRK15359	144	type III secretion system chaperone protein SscB;	98.35
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.34
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.34
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.33
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.3
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.29
PRK15359	144	type III secretion system chaperone protein SscB;	98.29
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.12
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.1
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.09
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.0
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.0
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.98
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.96
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.94
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.92
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.92
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.89
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.82
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.81
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.77
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.76
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.75
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.71
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.7
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.69
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.69
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.69
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.68
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.68
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.63
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.62
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.61
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.52
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.51
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.5
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.5
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.49
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.48
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.43
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.38
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.34
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.33
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.33
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.3
KOG0553	304	consensus TPR repeat-containing protein [General f	97.28
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.25
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.25
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.25
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.22
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.2
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.13
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.11
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.09
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.07
PF12688	120	TPR_5: Tetratrico peptide repeat	97.03
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.03
PRK10803	263	tol-pal system protein YbgF; Provisional	97.0
KOG0553	304	consensus TPR repeat-containing protein [General f	97.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.0
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.92
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.91
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.91
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.9
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.9
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.83
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.8
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.75
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.69
PF12688	120	TPR_5: Tetratrico peptide repeat	96.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.66
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.57
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.53
PRK10803	263	tol-pal system protein YbgF; Provisional	96.51
PF13371	73	TPR_9: Tetratricopeptide repeat	96.44
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.41
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.35
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.28
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.28
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.26
PF13371	73	TPR_9: Tetratricopeptide repeat	96.23
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.22
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.2
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.18
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.13
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.04
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.96
KOG1258	577	consensus mRNA processing protein [RNA processing	95.96
PRK15331	165	chaperone protein SicA; Provisional	95.95
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.93
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.91
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.9
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.89
COG3898	531	Uncharacterized membrane-bound protein [Function u	95.86
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.85
PRK15331	165	chaperone protein SicA; Provisional	95.8
KOG3941	406	consensus Intermediate in Toll signal transduction	95.8
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.71
KOG3941	406	consensus Intermediate in Toll signal transduction	95.67
KOG1585	308	consensus Protein required for fusion of vesicles	95.64
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.6
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.59
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.59
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.59
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.55
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	95.54
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.52
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.29
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.29
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.23
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.23
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.19
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.19
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.08
KOG4555	175	consensus TPR repeat-containing protein [Function	95.03
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.92
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.91
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.87
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.79
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.62
KOG4234	271	consensus TPR repeat-containing protein [General f	94.62
KOG0687	393	consensus 26S proteasome regulatory complex, subun	94.59
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	94.46
KOG4555	175	consensus TPR repeat-containing protein [Function	94.46
PRK11906	458	transcriptional regulator; Provisional	94.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.37
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.3
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.23
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.9
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.68
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.58
PF13512	142	TPR_18: Tetratricopeptide repeat	93.4
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.38
KOG1585	308	consensus Protein required for fusion of vesicles	93.19
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.16
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.1
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	93.0
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	92.89
PF13428	44	TPR_14: Tetratricopeptide repeat	92.88
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.87
PRK11906	458	transcriptional regulator; Provisional	92.85
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.82
PF13428	44	TPR_14: Tetratricopeptide repeat	92.82
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	92.46
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.2
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.15
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.12
PF13929	292	mRNA_stabil: mRNA stabilisation	92.03
PF13512	142	TPR_18: Tetratricopeptide repeat	91.86
COG3947	361	Response regulator containing CheY-like receiver a	91.82
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.73
KOG1258	577	consensus mRNA processing protein [RNA processing	91.6
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	91.53
PF13431	34	TPR_17: Tetratricopeptide repeat	91.27
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.04
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.01
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.76
KOG1941	518	consensus Acetylcholine receptor-associated protei	90.65
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.53
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.53
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.46
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.38
PF13431	34	TPR_17: Tetratricopeptide repeat	89.92
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	89.75
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.66
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	89.5
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	89.41
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	89.37
COG1747	711	Uncharacterized N-terminal domain of the transcrip	88.86
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.52
KOG4648	536	consensus Uncharacterized conserved protein, conta	87.14
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	87.08
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.64
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	85.69
KOG1586	288	consensus Protein required for fusion of vesicles	85.64
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	85.5
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.46
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	85.3
PRK11619	644	lytic murein transglycosylase; Provisional	85.1
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.07
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	85.03
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.95
PF13929	292	mRNA_stabil: mRNA stabilisation	84.87
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	84.13
KOG2471	696	consensus TPR repeat-containing protein [General f	84.04
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.95
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.9
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	83.68
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.65
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	83.42
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	83.33
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	83.28
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	82.66
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	82.61
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	82.49
COG4455	273	ImpE Protein of avirulence locus involved in tempe	82.38
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.29
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	81.95
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.75
KOG0687	393	consensus 26S proteasome regulatory complex, subun	81.33
PF14669	233	Asp_Glu_race_2: Putative aspartate racemase	81.07
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	81.02
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	80.9
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	80.72

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-65  Score=551.85  Aligned_cols=496  Identities=17%  Similarity=0.199  Sum_probs=459.1

Q ss_pred             HHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH---------------hcCCHHHHHH
Q 006744          125 VLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD---------------SQGRIAEMLE  189 (632)
Q Consensus       125 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~---------------~~g~~~~a~~  189 (632)
                      .+...|+.+.|+++|+++....-+.++...++.++.+|.+.|.+++|..+++.|.               +.|++++|.+
T Consensus       379 ~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~  458 (1060)
T PLN03218        379 RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR  458 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence            3445678899999999987654457788888889999999999999998887764               4578999999


Q ss_pred             HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006744          190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI  269 (632)
Q Consensus       190 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  269 (632)
                      +|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus       459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv  538 (1060)
T PLN03218        459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV  538 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHH
Q 006744          270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD--SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN  347 (632)
Q Consensus       270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  347 (632)
                      .||..+|+.||.+|++.|++++|.++|++|..  .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus       539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn  618 (1060)
T PLN03218        539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT  618 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence            99999999999999999999999999999986  6789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcC
Q 006744          348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIG  426 (632)
Q Consensus       348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g  426 (632)
                      .+|.+|++.|++++|.++|++|.+.|+.|+..+++.++.+|++.|++++|.++|++|.+.+.. +..+|+.||.+|++.|
T Consensus       619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G  698 (1060)
T PLN03218        619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK  698 (1060)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999999999999987 9999999999999999


Q ss_pred             ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744          427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR  506 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  506 (632)
                      ++++|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++
T Consensus       699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~  778 (1060)
T PLN03218        699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS  778 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCChHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744          507 DCLGNVASGPTEFKYALTILHVCR----S-------------------GEAEKIIEVLNEMTQEGCPPNEVICSAIISGM  563 (632)
Q Consensus       507 ~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  563 (632)
                      +|.+. +..||..+|+.++..|.+    .                   +..++|+.+|++|.+.|+.||..||+.++.++
T Consensus       779 ~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl  857 (1060)
T PLN03218        779 QAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCL  857 (1060)
T ss_pred             HHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Confidence            99876 789999999999865432    1                   22467999999999999999999999999888


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhh-chhHHHHhhhhhhchhhhhh
Q 006744          564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKK-KTADLVLSGLKFFGLESKLK  623 (632)
Q Consensus       564 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~l~~~~~~~~~k  623 (632)
                      ++.+..+.+.++++.|...+..+  +..+|+.++.++++. .++-.+++.+...|+-|.+-
T Consensus       858 ~~~~~~~~~~~m~~~m~~~~~~~--~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        858 QLPHDATLRNRLIENLGISADSQ--KQSNLSTLVDGFGEYDPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             cccccHHHHHHHHHHhccCCCCc--chhhhHHHHHhhccChHHHHHHHHHHHHcCCCCCcc
Confidence            89999999999999988887765  788999999998764 47888888888888888763

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=8.5e-67  Score=574.36  Aligned_cols=484  Identities=17%  Similarity=0.207  Sum_probs=453.5

Q ss_pred             ChHHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh-----------------
Q 006744          118 TPDLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-----------------  180 (632)
Q Consensus       118 ~~~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-----------------  180 (632)
                      +...+...+...++++.|+++|+.+.. .|+.||.++|+.++.+|++.++++.+.+++..+.+                 
T Consensus       154 ~~n~li~~~~~~g~~~~A~~~f~~M~~-~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y  232 (857)
T PLN03077        154 SWNVLVGGYAKAGYFDEALCLYHRMLW-AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY  232 (857)
T ss_pred             EHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence            345666677777888888888888754 58888888888888888888888888877766653                 


Q ss_pred             --cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744          181 --QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH  258 (632)
Q Consensus       181 --~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  258 (632)
                        .|++++|..+|++|.+    +|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.
T Consensus       233 ~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~  308 (857)
T PLN03077        233 VKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGR  308 (857)
T ss_pred             hcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHH
Confidence              4689999999999975    7999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744          259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      +++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|..    ||..+||++|.+|++.|++++|+++|++|.+.|
T Consensus       309 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g  384 (857)
T PLN03077        309 EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDN  384 (857)
T ss_pred             HHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999974    689999999999999999999999999999999


Q ss_pred             CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH
Q 006744          339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL  418 (632)
Q Consensus       339 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  418 (632)
                      +.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+++.++.+|++.|++++|.++|++|.+.   +..+||.+
T Consensus       385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---d~vs~~~m  461 (857)
T PLN03077        385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK---DVISWTSI  461 (857)
T ss_pred             CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC---CeeeHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999876   77899999


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 006744          419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI  498 (632)
Q Consensus       419 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  498 (632)
                      |.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..++++||++|+++|++
T Consensus       462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~  540 (857)
T PLN03077        462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM  540 (857)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence            9999999999999999999986 589999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          499 DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN  578 (632)
Q Consensus       499 ~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  578 (632)
                      ++|.++|+.+      .+|..+|+++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.
T Consensus       541 ~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~  614 (857)
T PLN03077        541 NYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS  614 (857)
T ss_pred             HHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence            9999999885      5899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhhhhchhhhh
Q 006744          579 LR-ERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLESKL  622 (632)
Q Consensus       579 m~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~~~~  622 (632)
                      |. +.|+.|  +..+|+.++..+++.++.+++.+.++.+.++|..
T Consensus       615 M~~~~gi~P--~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~  657 (857)
T PLN03077        615 MEEKYSITP--NLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP  657 (857)
T ss_pred             HHHHhCCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCH
Confidence            99 678877  7799999999999999999999999887766553

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.2e-64  Score=542.12  Aligned_cols=465  Identities=20%  Similarity=0.321  Sum_probs=436.4

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC--------------------CHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744          149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQG--------------------RIAEMLEILEKMRRNLCKPDVFAYTA  208 (632)
Q Consensus       149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g--------------------~~~~a~~~~~~m~~~~~~~~~~~~~~  208 (632)
                      .++...|..++..|++.|++++|.++|+.|.+.|                    .+++|..+|+.|..    ||..+|+.
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~  442 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM  442 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence            5678889999999999999999999999998654                    57899999999875    99999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      +|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh--CCCCCCHhcHHHHHHHHHhcCChhHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ--DDLAPDFSTVNPLLVCCAEMGRMDNFFKLL  366 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  366 (632)
                      +++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..  .|+.||..+|+.+|.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999986  679999999999999999999999999999


Q ss_pred             HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744          367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV  445 (632)
Q Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  445 (632)
                      +.|.+.|+.++..+++.++.+|++.|++++|.++|++|.+.|.. +..+|+.+|.+|++.|++++|.++|++|.+.|+.|
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p  682 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL  682 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999877 99999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744          446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI  525 (632)
Q Consensus       446 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  525 (632)
                      |..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|... +..||..+|+.++
T Consensus       683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~-Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL-GLCPNTITYSILL  761 (1060)
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999765 7899999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHC
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK----H-------------------GTLEEARKVFTNLRER  582 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~  582 (632)
                      .+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+    +                   +..++|..+|++|++.
T Consensus       762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~  841 (1060)
T PLN03218        762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA  841 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999976542    1                   1246799999999999


Q ss_pred             CCCCCCChhhHHHHHHHHhhhchhHHHHhhhhhhchhh
Q 006744          583 KLLTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLES  620 (632)
Q Consensus       583 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~~  620 (632)
                      |+.|  +..+|..++....+.+......+.++.++..+
T Consensus       842 Gi~P--d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~  877 (1060)
T PLN03218        842 GTLP--TMEVLSQVLGCLQLPHDATLRNRLIENLGISA  877 (1060)
T ss_pred             CCCC--CHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence            9988  78899999976666666666555555555444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.2e-63  Score=536.49  Aligned_cols=452  Identities=17%  Similarity=0.193  Sum_probs=419.3

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh-------------------c
Q 006744          121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS-------------------Q  181 (632)
Q Consensus       121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~-------------------~  181 (632)
                      .+...+...++++.|+++|+|+....++.||..+|+.++.+|++.++++.|.+++..|.+                   .
T Consensus        92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~  171 (697)
T PLN03081         92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC  171 (697)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence            344455666778888888888876666778888888888888888888888888877764                   3


Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744          182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF  261 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  261 (632)
                      |++++|.++|++|.+    ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.+.+++
T Consensus       172 g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~  247 (697)
T PLN03081        172 GMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLH  247 (697)
T ss_pred             CCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHH
Confidence            478888888988864    8999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006744          262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP  341 (632)
Q Consensus       262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  341 (632)
                      ..+.+.|+.+|..+|+.||++|++.|++++|.++|++|..    +|..+||+||.+|++.|++++|+++|++|.+.|+.|
T Consensus       248 ~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        248 CCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999975    599999999999999999999999999999999999


Q ss_pred             CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744          342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA  421 (632)
Q Consensus       342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  421 (632)
                      |..||+.++.+|++.|++++|.+++..|.+.|+.++..+++.++.+|+++|++++|.++|++|.+.   |..+||.||.+
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~---d~~t~n~lI~~  400 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK---NLISWNALIAG  400 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC---CeeeHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999765   78899999999


Q ss_pred             HHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCCHHH
Q 006744          422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE-MSQVPSVAAYNCLTKGLCKIGEIDA  500 (632)
Q Consensus       422 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~  500 (632)
                      |++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++
T Consensus       401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e  480 (697)
T PLN03081        401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE  480 (697)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence            999999999999999999999999999999999999999999999999999986 6999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       501 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  580 (632)
                      |.++++++    +..|+..+|++|+.+|+..|+++.|..+++++.+.+ +.+..+|..|+++|++.|++++|.+++++|.
T Consensus       481 A~~~~~~~----~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~  555 (697)
T PLN03081        481 AYAMIRRA----PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLK  555 (697)
T ss_pred             HHHHHHHC----CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            99999875    678999999999999999999999999999998654 3457799999999999999999999999999


Q ss_pred             HCCCCCCC
Q 006744          581 ERKLLTEA  588 (632)
Q Consensus       581 ~~~~~~~~  588 (632)
                      ++|+...+
T Consensus       556 ~~g~~k~~  563 (697)
T PLN03081        556 RKGLSMHP  563 (697)
T ss_pred             HcCCccCC
Confidence            99986433

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.3e-62  Score=537.09  Aligned_cols=465  Identities=17%  Similarity=0.185  Sum_probs=337.7

Q ss_pred             CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744          129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA  208 (632)
Q Consensus       129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  208 (632)
                      .+..+.|.+++..+.+ .+..++...+|+|+.+|++.|+++.|.++                |++|.+    ||..+||.
T Consensus        99 ~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~----------------f~~m~~----~d~~~~n~  157 (857)
T PLN03077         99 KRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYV----------------FGKMPE----RDLFSWNV  157 (857)
T ss_pred             CCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHH----------------HhcCCC----CCeeEHHH
Confidence            3445555555555543 34455566666666666666555555544                555532    67777777


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      +|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..+++..+.+++..|.+.|+.||..+|+.||.+|++.|+
T Consensus       158 li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~  237 (857)
T PLN03077        158 LVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD  237 (857)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      +++|.++|++|..    +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..
T Consensus       238 ~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~  313 (857)
T PLN03077        238 VVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY  313 (857)
T ss_pred             HHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence            7777777777753    577777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH
Q 006744          369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL  448 (632)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  448 (632)
                      +.+.|+.++..+++.++.+|++.|++++|.++|++|...   +..+||.+|.+|++.|++++|+++|++|.+.|+.||..
T Consensus       314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~---d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~  390 (857)
T PLN03077        314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK---DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI  390 (857)
T ss_pred             HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCC---CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCce
Confidence            777777777777777777777777777777777777643   56677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV  528 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  528 (632)
                      ||+.++.+|++.|+++.|.++++.|.+.|+.++..+|+.||++|++.|++++|.++|++|.+     +|..+|+.+|.+|
T Consensus       391 t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~d~vs~~~mi~~~  465 (857)
T PLN03077        391 TIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-----KDVISWTSIIAGL  465 (857)
T ss_pred             eHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC-----CCeeeHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777776532     4455555555555


Q ss_pred             HHcCCHHHHHHHHHHHHh----------------------------------CCC-------------------------
Q 006744          529 CRSGEAEKIIEVLNEMTQ----------------------------------EGC-------------------------  549 (632)
Q Consensus       529 ~~~g~~~~a~~~~~~m~~----------------------------------~g~-------------------------  549 (632)
                      ++.|+.++|+++|++|.+                                  .|+                         
T Consensus       466 ~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~  545 (857)
T PLN03077        466 RLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN  545 (857)
T ss_pred             HHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHH
Confidence            555555555555555543                                  221                         


Q ss_pred             -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHh---hhh-hhchhh
Q 006744          550 -----PPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLS---GLK-FFGLES  620 (632)
Q Consensus       550 -----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~---~l~-~~~~~~  620 (632)
                           .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.|  +..+|..++.++.+.+..++.++   .|+ ..|+.|
T Consensus       546 ~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P--d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P  623 (857)
T PLN03077        546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP--DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP  623 (857)
T ss_pred             HHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC
Confidence                 3456678888888999999999999999999999987  78899999999998777666544   444 567777


Q ss_pred             hhhhhccc
Q 006744          621 KLKAKGCK  628 (632)
Q Consensus       621 ~~k~~~~~  628 (632)
                      ..+.++|.
T Consensus       624 ~~~~y~~l  631 (857)
T PLN03077        624 NLKHYACV  631 (857)
T ss_pred             chHHHHHH
Confidence            77777664

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.4e-60  Score=508.13  Aligned_cols=464  Identities=17%  Similarity=0.191  Sum_probs=431.7

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhc--------------------CCHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744          149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQ--------------------GRIAEMLEILEKMRRNLCKPDVFAYTA  208 (632)
Q Consensus       149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~  208 (632)
                      ..+..+|+.+|..|.+.|++++|.++|+.|...                    ++++.+..++..|.+.|+.||..+|+.
T Consensus        84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~  163 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR  163 (697)
T ss_pred             CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            456678999999999999999999999999754                    367889999999999999999999999


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      |+.+|++.|++++|.++|++|.    .||..+|+++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|.
T Consensus       164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~  239 (697)
T PLN03081        164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS  239 (697)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence            9999999999999999999997    589999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      .+.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.    .+|..+|+.++.+|++.|++++|.++|++
T Consensus       240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~  315 (697)
T PLN03081        240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYE  315 (697)
T ss_pred             HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999996    45889999999999999999999999999


Q ss_pred             HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH
Q 006744          369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS  447 (632)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  447 (632)
                      |.+.|+.|+..++..++.+|++.|++++|.+++..|.+.+.. +..+||.||.+|++.|++++|.++|++|.    .||.
T Consensus       316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~  391 (697)
T PLN03081        316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL  391 (697)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence            999999999999999999999999999999999999999977 99999999999999999999999999996    4799


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 006744          448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH  527 (632)
Q Consensus       448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  527 (632)
                      .+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+..+..|+..+|+.++.+
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhH
Q 006744          528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD  607 (632)
Q Consensus       528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~  607 (632)
                      |++.|++++|.+++++|   ++.|+..+|+.|+.+|...|+++.|.++++++.+.+...........+++...++.+++.
T Consensus       472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~  548 (697)
T PLN03081        472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA  548 (697)
T ss_pred             HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence            99999999999999876   578999999999999999999999999999998766543334445555555666667777


Q ss_pred             HHHhhhhhhchhhhhhhhcccCC
Q 006744          608 LVLSGLKFFGLESKLKAKGCKLL  630 (632)
Q Consensus       608 ~v~~~l~~~~~~~~~k~~~~~~~  630 (632)
                      .+++.|+..|+.   |..||+.+
T Consensus       549 ~v~~~m~~~g~~---k~~g~s~i  568 (697)
T PLN03081        549 KVVETLKRKGLS---MHPACTWI  568 (697)
T ss_pred             HHHHHHHHcCCc---cCCCeeEE
Confidence            788888888877   77888754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.6e-27  Score=267.73  Aligned_cols=477  Identities=10%  Similarity=0.010  Sum_probs=280.0

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH------------------hcC
Q 006744          121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQG  182 (632)
Q Consensus       121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~------------------~~g  182 (632)
                      .+..++...++++.|.++|+.+....  +.+...+..+...+...|++++|.+.++.+.                  ..|
T Consensus       368 ~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~  445 (899)
T TIGR02917       368 LLGEAYLALGDFEKAAEYLAKATELD--PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSG  445 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcC
Confidence            34566677888999999998876542  4456677788888888888888888777654                  346


Q ss_pred             CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744          183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR  262 (632)
Q Consensus       183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  262 (632)
                      ++++|..+++.+.... +.+..+|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus       446 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~  523 (899)
T TIGR02917       446 QFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFE  523 (899)
T ss_pred             CHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            7788888888877653 3466677778888888888888888888777653 3345566667777777777777777777


Q ss_pred             HHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744          263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD  342 (632)
Q Consensus       263 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  342 (632)
                      ++.+.+.. +..++..+...+.+.|+.++|...++++...+.. +...+..++..|.+.|++++|..+++.+.+.. ..+
T Consensus       524 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~  600 (899)
T TIGR02917       524 KVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQ-EIEPALALAQYYLGKGQLKKALAILNEAADAA-PDS  600 (899)
T ss_pred             HHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCC
Confidence            77665433 5566666666666666666666666666554432 44455556666666666666666666655432 224


Q ss_pred             HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744          343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL  422 (632)
Q Consensus       343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  422 (632)
                      ..+|..+..++...|++++|...++.+.+.... +...+..+..++.+.|++++|..+|+++.+..+.+..++..++..+
T Consensus       601 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  679 (899)
T TIGR02917       601 PEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            455555666666666666666666665554322 2334444555555556666666666555555444555555555555


Q ss_pred             HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC------------------------
Q 006744          423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ------------------------  478 (632)
Q Consensus       423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~------------------------  478 (632)
                      ...|++++|..+++.+...+ +.+...+..+...+...|++++|.+.|+.+.+.+.                        
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  758 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKT  758 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHH
Confidence            55555555555555554443 23334444444445555555555555555444321                        


Q ss_pred             --------CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006744          479 --------VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP  550 (632)
Q Consensus       479 --------~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~  550 (632)
                              ..+...+..+...|...|++++|...|+++++..  ..+...++.+...+...|+ .+|+++++++.+.. +
T Consensus       759 ~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~  834 (899)
T TIGR02917       759 LEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-P  834 (899)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-C
Confidence                    2234444444555555555555555555554332  1233444445555555555 44555555555442 3


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhh
Q 006744          551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL  613 (632)
Q Consensus       551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l  613 (632)
                      .+..++..+..++...|++++|.++++++.+.+..   +..++..+...+.+.++.+.+.+.+
T Consensus       835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~  894 (899)
T TIGR02917       835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE---AAAIRYHLALALLATGRKAEARKEL  894 (899)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34445555555666666666666666666665543   2334444444455545544444443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=4.1e-27  Score=266.09  Aligned_cols=468  Identities=13%  Similarity=0.051  Sum_probs=397.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH------------------hcC
Q 006744          121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQG  182 (632)
Q Consensus       121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~------------------~~g  182 (632)
                      .+..++...++++.|+..+..+....  +.+...++.+...+.+.|++++|.++|+.+.                  ..|
T Consensus       334 ~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  411 (899)
T TIGR02917       334 LLASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQG  411 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Confidence            45566778899999999999886643  5577889999999999999999999998765                  357


Q ss_pred             CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744          183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR  262 (632)
Q Consensus       183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  262 (632)
                      ++++|.+.|+.+.+.... +...+..++..+.+.|++++|.++++.+.... +.+..++..+..++...|++++|.+.|+
T Consensus       412 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  489 (899)
T TIGR02917       412 DPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFE  489 (899)
T ss_pred             ChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            899999999999886533 34566778889999999999999999998764 5577899999999999999999999999


Q ss_pred             HHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744          263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD  342 (632)
Q Consensus       263 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  342 (632)
                      ++.+.... +...+..+...+...|++++|.+.|+++...+.. +..++..+...+.+.|++++|..+++++.+.+. .+
T Consensus       490 ~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~  566 (899)
T TIGR02917       490 KALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QE  566 (899)
T ss_pred             HHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cc
Confidence            99886543 6678888999999999999999999999987654 778899999999999999999999999987653 35


Q ss_pred             HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744          343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL  422 (632)
Q Consensus       343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  422 (632)
                      ...+..+...+...|++++|..+++.+.+... .+...+..+..+|...|++++|...|+.+.+..+.+...+..+..++
T Consensus       567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  645 (899)
T TIGR02917       567 IEPALALAQYYLGKGQLKKALAILNEAADAAP-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAY  645 (899)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            66788899999999999999999999987653 35677888899999999999999999999988777888999999999


Q ss_pred             HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744          423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM  502 (632)
Q Consensus       423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  502 (632)
                      .+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. ..+...+..+...+...|++++|.
T Consensus       646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~  723 (899)
T TIGR02917       646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI  723 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999998754 4567889999999999999999999999999865 356778888999999999999999


Q ss_pred             HHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      +.|++++...   |+...+..++..+.+.|++++|.+.++++.+.. +.+...+..+...|.+.|++++|.++|+++.+.
T Consensus       724 ~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       724 QAYRKALKRA---PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             HHHHHHHhhC---CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            9999988653   444666678888899999999999999988874 667888888999999999999999999999887


Q ss_pred             CCCCCCChhhHHHHHHHHhhhch
Q 006744          583 KLLTEANTIVYDEILIEHMKKKT  605 (632)
Q Consensus       583 ~~~~~~~~~~~~~l~~~~~~~~~  605 (632)
                      +..   +...+..+...+...++
T Consensus       800 ~p~---~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       800 APD---NAVVLNNLAWLYLELKD  819 (899)
T ss_pred             CCC---CHHHHHHHHHHHHhcCc
Confidence            643   34445555555555444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=5e-20  Score=208.66  Aligned_cols=392  Identities=12%  Similarity=0.020  Sum_probs=248.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc-HHhH------------
Q 006744          210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID-RAIY------------  276 (632)
Q Consensus       210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~------------  276 (632)
                      ...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+...... ...+            
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            345667889999999999888764 34677888888899999999999999998887543321 1111            


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744          277 GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM  356 (632)
Q Consensus       277 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  356 (632)
                      ..+...+.+.|++++|+..|+++.+.... +...+..+...+...|++++|++.|++..+.... +...+..+...+. .
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~  431 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-Q  431 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-h
Confidence            12245677889999999999998887543 5667777888899999999999999888865322 2333444444332 2


Q ss_pred             CChhHHHHHHHHHHHCCCC--------ccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 006744          357 GRMDNFFKLLAQMEKLKFS--------VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEV  428 (632)
Q Consensus       357 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  428 (632)
                      ++.++|..+++.+......        .....+..+...+...|++++|++.|++..+..+.+...+..+...|.+.|++
T Consensus       432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~  511 (1157)
T PRK11447        432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQR  511 (1157)
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            3444444444332111000        00111222333344455555555555555554444444455555555555555


Q ss_pred             hhHHHHHHHHhhCCCCcCHHH--------------------------------------------HHHHHHHHHHcCCHH
Q 006744          429 KKALYLFGKMRGLNLEVNSLS--------------------------------------------FSIAIQCHVESGDIL  464 (632)
Q Consensus       429 ~~A~~~~~~m~~~~~~p~~~t--------------------------------------------~~~ll~~~~~~g~~~  464 (632)
                      ++|...++++.+.. +-+...                                            +..+...+...|+.+
T Consensus       512 ~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        512 SQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            55555555544321 111111                                            112334556667777


Q ss_pred             HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744          465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEM  544 (632)
Q Consensus       465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  544 (632)
                      +|..+++.     ...+...+..+...+.+.|++++|++.|+++++..+.  +...+..++..+...|++++|++.++..
T Consensus       591 eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        591 EAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             HHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77766651     2345566777888999999999999999999876433  4456777889999999999999999988


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCC---ChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744          545 TQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEA---NTIVYDEILIEHMKKKTADLVLSGLK  614 (632)
Q Consensus       545 ~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~v~~~l~  614 (632)
                      .+.. +.+..++..+..++...|++++|.++++++........+   +...+..+-..+...++.+.++..++
T Consensus       664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~  735 (1157)
T PRK11447        664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK  735 (1157)
T ss_pred             hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8763 455667788888999999999999999999886543222   22344333334444455555544443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.93  E-value=6e-20  Score=208.05  Aligned_cols=469  Identities=13%  Similarity=0.051  Sum_probs=321.8

Q ss_pred             hHHHHhhhhCCC---ChHHH---HHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHH----------------HHHHHHHH
Q 006744          106 QVVTELSKLRRV---TPDLV---AEVLKVENNPTLASKFFHWAGKQKGYKHNFASY----------------NALAYCLS  163 (632)
Q Consensus       106 ~~~~~l~~~~~~---~~~~~---~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~~li~~~~  163 (632)
                      .+...+.++..+   +|..+   ..++...|+.+.|.+.++.+.+..  +.+....                -.+...+.
T Consensus        46 ~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~  123 (1157)
T PRK11447         46 LVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPEGRQALQQARLLA  123 (1157)
T ss_pred             HHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCchhhHHHHHHHHH
Confidence            344445444433   34433   344556789999999998886643  2222221                23345688


Q ss_pred             hCCChhHHhHHHHHHHh-------------------cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          164 RNNLFRAADQVPELMDS-------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR  224 (632)
Q Consensus       164 ~~~~~~~a~~l~~~~~~-------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  224 (632)
                      +.|++++|.+.|+.+.+                   .|+.++|++.|+++.+..+ -+...+..+...+...|+.++|++
T Consensus       124 ~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~LA~ll~~~g~~~eAl~  202 (1157)
T PRK11447        124 TTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNTLALLLFSSGRRDEGFA  202 (1157)
T ss_pred             hCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHccCCHHHHHH
Confidence            89999999998887653                   2678889999999988743 367778888899999999999999


Q ss_pred             HHHHHHhCCC------------------CcC-HHhHH----------------------------------HHHHHHHhc
Q 006744          225 VWEEMKKDLV------------------EAD-VMAYV----------------------------------TLIMGLCKG  251 (632)
Q Consensus       225 ~~~~m~~~~~------------------~p~-~~~~~----------------------------------~li~~~~~~  251 (632)
                      .|+++.+...                  .++ ...+.                                  .....+...
T Consensus       203 ~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~  282 (1157)
T PRK11447        203 VLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDS  282 (1157)
T ss_pred             HHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHC
Confidence            9998754320                  000 00000                                  113345667


Q ss_pred             CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHH------------HHHHHH
Q 006744          252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYN------------SIIGGL  318 (632)
Q Consensus       252 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~------------~li~~~  318 (632)
                      |++++|+..|++..+.... +..++..|..+|.+.|+.++|+..|++..+..... ....|.            .+...+
T Consensus       283 g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~  361 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA  361 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence            8889999999888886543 67788888888889999999999998888764332 111221            223456


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH
Q 006744          319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL  398 (632)
Q Consensus       319 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  398 (632)
                      .+.|++++|+..|+++.+... .+...+..+...+...|++++|++.|+++.+.... +......+...|. .++.++|.
T Consensus       362 ~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~  438 (1157)
T PRK11447        362 LKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKAL  438 (1157)
T ss_pred             HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHH
Confidence            788899999999988887643 24556667778888889999999999888876543 2334444555553 45678888


Q ss_pred             HHHHHHHhCCCC---------ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 006744          399 DVFEELKGKGYS---------SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC  469 (632)
Q Consensus       399 ~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~  469 (632)
                      ..++.+......         ....+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++|...
T Consensus       439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~  517 (1157)
T PRK11447        439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL  517 (1157)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            887765432111         12345667788899999999999999998853 33456677888899999999999999


Q ss_pred             HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------------------------------------
Q 006744          470 HNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV-------------------------------------  512 (632)
Q Consensus       470 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------------------------------------  512 (632)
                      ++++.+.... +...+..+...+...|+.++|+..++.+....                                     
T Consensus       518 l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l  596 (1157)
T PRK11447        518 MRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL  596 (1157)
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999875422 33333333333344444444444443321100                                     


Q ss_pred             -CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          513 -ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       513 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                       ....+...+..+...+.+.|++++|++.|++..+.. +.+...+..++.+|...|++++|++.++.+.+...
T Consensus       597 ~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p  668 (1157)
T PRK11447        597 RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN  668 (1157)
T ss_pred             HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC
Confidence             012233445567888889999999999999999874 66788999999999999999999999998877643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=3.3e-20  Score=177.94  Aligned_cols=371  Identities=19%  Similarity=0.127  Sum_probs=309.3

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccH-HhHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR-AIYGVLI  280 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li  280 (632)
                      -..+|..+.+.+-..|++++|+.+|+.+.+.. +-.+..|..+..++...|+.+.|.+.|.+..+.+  |+. ...+.+.
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg  191 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG  191 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence            46789999999999999999999999999874 3467889999999999999999999999988864  333 3344455


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HhcHHHHHHHHHhcCCh
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD-FSTVNPLLVCCAEMGRM  359 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~  359 (632)
                      ..+...|++++|...|.+.++.... =.+.|+.|...+...|+...|++.|++..+.+  |+ ...|..|...|...+.+
T Consensus       192 nLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~  268 (966)
T KOG4626|consen  192 NLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIF  268 (966)
T ss_pred             HHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcc
Confidence            6666789999999999998886442 45689999999999999999999999988653  33 35788899999999999


Q ss_pred             hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 006744          360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR  439 (632)
Q Consensus       360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  439 (632)
                      +.|...+.+....... ....+.-+...|-..|.++.|+..|++..+..+.-...|+.|..++-..|++.+|...|.+..
T Consensus       269 d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  269 DRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             hHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            9999999887765432 344555566668889999999999999999988878899999999999999999999999988


Q ss_pred             hCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH
Q 006744          440 GLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE  518 (632)
Q Consensus       440 ~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~  518 (632)
                      ... +-.....+.|...+...|.++.|..+|....+-  .|. ...++.|...|-.+|++++|+..|++++.   +.|+-
T Consensus       348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr---I~P~f  421 (966)
T KOG4626|consen  348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR---IKPTF  421 (966)
T ss_pred             HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh---cCchH
Confidence            752 334567889999999999999999999999884  344 56788899999999999999999999874   45653


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744          519 -FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT  586 (632)
Q Consensus       519 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  586 (632)
                       ..|+.+...|-..|+.+.|+..+.+.+..+ +-=...++.|...|...|++.+|+.-++...+.....
T Consensus       422 Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf  489 (966)
T KOG4626|consen  422 ADALSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF  489 (966)
T ss_pred             HHHHHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence             568889999999999999999999998764 3335578899999999999999999999999886643

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=4.6e-21  Score=193.81  Aligned_cols=303  Identities=17%  Similarity=0.115  Sum_probs=150.4

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc---HHhHHHHHHHHHhcCC
Q 006744          212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID---RAIYGVLIEGLVGEGK  288 (632)
Q Consensus       212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~  288 (632)
                      .+...|++++|++.|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++   ..++..+...|.+.|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            3445666666666666666553 23444566666666666666666666666655422111   1345555556666666


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      +++|..+|+++.+... .+..+++.++..+.+.|++++|.+.++.+.+.+..+.....                      
T Consensus       123 ~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----------------------  179 (389)
T PRK11788        123 LDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEI----------------------  179 (389)
T ss_pred             HHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHH----------------------
Confidence            6666666666554322 24445555555666666666666665555543322110000                      


Q ss_pred             HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH
Q 006744          369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL  448 (632)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  448 (632)
                               ...+..+...+.+.|++++|...|+++.+..+.+...+..+...|.+.|++++|.++|+++...+......
T Consensus       180 ---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  250 (389)
T PRK11788        180 ---------AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE  250 (389)
T ss_pred             ---------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence                     00111122223333444444444444443333344455555666666666666666666665432111123


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV  528 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  528 (632)
                      ++..+..+|...|+.++|...++++.+..  |+...+..++..+.+.|++++|.++++++++.   .|+...++.++..+
T Consensus       251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~---~P~~~~~~~l~~~~  325 (389)
T PRK11788        251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR---HPSLRGFHRLLDYH  325 (389)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh---CcCHHHHHHHHHHh
Confidence            44555555555555555555555555432  33334455555555555555555555554432   34444444444444


Q ss_pred             HH---cCCHHHHHHHHHHHHhCCCCCC
Q 006744          529 CR---SGEAEKIIEVLNEMTQEGCPPN  552 (632)
Q Consensus       529 ~~---~g~~~~a~~~~~~m~~~g~~p~  552 (632)
                      +.   .|+.++++.++++|.+.++.|+
T Consensus       326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        326 LAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             hhccCCccchhHHHHHHHHHHHHHhCC
Confidence            32   2345555555555554444333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=3.3e-20  Score=187.59  Aligned_cols=308  Identities=15%  Similarity=0.088  Sum_probs=236.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHcc
Q 006744          245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD---LGIYNSIIGGLCRV  321 (632)
Q Consensus       245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~  321 (632)
                      ...+...|++++|.+.|+++.+.+.. +..++..+...+...|++++|..+++.+...+..++   ...+..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDPE-TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            33456668888888888888876433 556777788888888888888888888776532211   24567777788888


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHH
Q 006744          322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVF  401 (632)
Q Consensus       322 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  401 (632)
                      |++++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.+..+....                     
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------  178 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------  178 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH---------------------
Confidence            88888888888877642 23456677777777777777777777777665432210000                     


Q ss_pred             HHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006744          402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS  481 (632)
Q Consensus       402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~  481 (632)
                               ....|..+...+.+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+....
T Consensus       179 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~  248 (389)
T PRK11788        179 ---------IAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL  248 (389)
T ss_pred             ---------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH
Confidence                     12246678888999999999999999998754 33456778888999999999999999999997643333


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS  561 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  561 (632)
                      ..+++.++.+|...|++++|...++++.+.   .|+...+..++..+.+.|++++|+.+++++.+.  .|+..++..++.
T Consensus       249 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~  323 (389)
T PRK11788        249 SEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLD  323 (389)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHH
Confidence            567888999999999999999999998865   456566688999999999999999999999886  588889998888


Q ss_pred             HHHh---cCCHHHHHHHHHHHHHCCCCCCCCh
Q 006744          562 GMCK---HGTLEEARKVFTNLRERKLLTEANT  590 (632)
Q Consensus       562 ~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~  590 (632)
                      .+..   .|+.+++..++++|.++++.+++..
T Consensus       324 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        324 YHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             HhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            8775   5689999999999999988887763

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.89  E-value=2e-19  Score=172.61  Aligned_cols=431  Identities=14%  Similarity=0.134  Sum_probs=334.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHH-HHHHHHHhcC
Q 006744          174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV-TLIMGLCKGG  252 (632)
Q Consensus       174 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g  252 (632)
                      +-+.+.++|++++|+.+++.+.+...+ .+..|..+..++...|+.+.|.+.|.+..+.  .|+..... .+...+...|
T Consensus       122 ~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~G  198 (966)
T KOG4626|consen  122 LANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEG  198 (966)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhc
Confidence            334556788889999999998886432 6789999999999999999999999998876  46655443 3445556679


Q ss_pred             ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006744          253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE  332 (632)
Q Consensus       253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  332 (632)
                      ++++|...|.+.++.... -...|+.|...+-..|+...|+..|++.+...+. =...|-.|...|...+.+++|+..|.
T Consensus       199 rl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~  276 (966)
T KOG4626|consen  199 RLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYL  276 (966)
T ss_pred             ccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHH
Confidence            999999999998886432 3567899999999999999999999999986433 35688889999999999999999999


Q ss_pred             HHHhCCCCCC-HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCC
Q 006744          333 VTVQDDLAPD-FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS  411 (632)
Q Consensus       333 ~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  411 (632)
                      +....  .|+ ...+..+...|...|+++.|...+++.++.... -...++-+..++...|++.+|++.|.+.....+..
T Consensus       277 rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h  353 (966)
T KOG4626|consen  277 RALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNH  353 (966)
T ss_pred             HHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCcc
Confidence            88754  444 456777778899999999999999999887654 35667888888999999999999999999998888


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHH
Q 006744          412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLT  489 (632)
Q Consensus       412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li  489 (632)
                      ..+.+.|...|...|.+++|..+|....+.  .|. ...++.|...|-+.|++++|...|++.++  +.|+ ...|+.+.
T Consensus       354 adam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG  429 (966)
T KOG4626|consen  354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG  429 (966)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence            889999999999999999999999998874  454 45688899999999999999999999987  5677 67899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc-
Q 006744          490 KGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN-EVICSAIISGMCKH-  566 (632)
Q Consensus       490 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~-  566 (632)
                      ..|...|+.++|++.+.+.+.-   .|. ...++.|...|-.+|+..+|+.-+++..+.  +|| +..|..++.++--. 
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~---nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vc  504 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQI---NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVC  504 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhc---CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHh
Confidence            9999999999999999998753   454 345777899999999999999999999986  455 33555554443222 


Q ss_pred             --CCH----HHHHHHHHHHHHCCCCCC-----CChhhHHHHHHHHhhhchhHHHHhhhhhhchhhh
Q 006744          567 --GTL----EEARKVFTNLRERKLLTE-----ANTIVYDEILIEHMKKKTADLVLSGLKFFGLESK  621 (632)
Q Consensus       567 --g~~----~~A~~~~~~m~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~~~  621 (632)
                        -|+    ++-.++.++-.++...|.     .-.+..+.++...+..+-+...+.....+|.+|-
T Consensus       505 dw~D~d~~~~kl~sivrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~py  570 (966)
T KOG4626|consen  505 DWTDYDKRMKKLVSIVRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPY  570 (966)
T ss_pred             cccchHHHHHHHHHHHHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCC
Confidence              222    223333333333333221     1122344555566666666666666666666543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=1.9e-18  Score=183.95  Aligned_cols=399  Identities=11%  Similarity=-0.010  Sum_probs=291.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHH
Q 006744          178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG  257 (632)
Q Consensus       178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  257 (632)
                      ....|++++|+..|++..+.  .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..++...|++++|
T Consensus       137 ~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA  213 (615)
T TIGR00990       137 AYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADA  213 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            34678999999999998874  4677889999999999999999999999988764 34667888899999999999999


Q ss_pred             HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---------------------------CCCCC-Hh
Q 006744          258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS---------------------------GYRAD-LG  309 (632)
Q Consensus       258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------g~~~~-~~  309 (632)
                      +.-|......+...+... ..++..+........+...++.-...                           ...+. ..
T Consensus       214 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (615)
T TIGR00990       214 LLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN  292 (615)
T ss_pred             HHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence            998877665432222221 22222211111111222221110000                           00000 00


Q ss_pred             hHHHHHHH---HHccCCHHHHHHHHHHHHhCC-CCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHH
Q 006744          310 IYNSIIGG---LCRVKQFDKAYKLFEVTVQDD-LAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF  384 (632)
Q Consensus       310 ~~~~li~~---~~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  384 (632)
                      .+..+...   ....+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+.... ....+..+
T Consensus       293 ~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~l  371 (615)
T TIGR00990       293 GQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKR  371 (615)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence            00001000   122467999999999998764 233 3456777778888999999999999999886543 34456677


Q ss_pred             HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 006744          385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL  464 (632)
Q Consensus       385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~  464 (632)
                      ..++...|++++|...|+++.+.++.+..+|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|+++
T Consensus       372 a~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~  450 (615)
T TIGR00990       372 ASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIA  450 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHH
Confidence            7788899999999999999999887789999999999999999999999999998864 345667778888999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----HH-HHHHHHHHHHHcCCHHHHHH
Q 006744          465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT----EF-KYALTILHVCRSGEAEKIIE  539 (632)
Q Consensus       465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~-~~~~l~~~~~~~g~~~~a~~  539 (632)
                      +|...|+..++.. ..+...++.+...+...|++++|++.|++.+........    .. .++..+..+...|++++|++
T Consensus       451 eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~  529 (615)
T TIGR00990       451 SSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN  529 (615)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence            9999999998753 335788899999999999999999999998865322111    11 12222223334699999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          540 VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       540 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ++++..+.. +.+...+..+..++...|++++|.++|++..+..-
T Consensus       530 ~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       530 LCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            999998874 45566889999999999999999999999987643

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.87  E-value=2.1e-17  Score=175.86  Aligned_cols=380  Identities=11%  Similarity=-0.066  Sum_probs=272.5

Q ss_pred             HHHHHHHhCCChhHHhHHHHHHH-----------------hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh
Q 006744          157 ALAYCLSRNNLFRAADQVPELMD-----------------SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL  219 (632)
Q Consensus       157 ~li~~~~~~~~~~~a~~l~~~~~-----------------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  219 (632)
                      .....+.+.|+++.|+..|+...                 ..|++++|++.++...+... .+..+|..+..+|...|++
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~  210 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKY  210 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCH
Confidence            34455555666666666655533                 34788889988888887643 3677899999999999999


Q ss_pred             hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc--cc-------------------------
Q 006744          220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL--ID-------------------------  272 (632)
Q Consensus       220 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~-------------------------  272 (632)
                      ++|+.-|......+- .+......++..+...    .+........+....  +.                         
T Consensus       211 ~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       211 ADALLDLTASCIIDG-FRNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HHHHHHHHHHHHhCC-CccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            999999987765431 2222222222222111    111111111111000  00                         


Q ss_pred             --H---HhHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-CCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744          273 --R---AIYGVLIEG---LVGEGKVGKACDLLKDLVDSG-YRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD  342 (632)
Q Consensus       273 --~---~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  342 (632)
                        .   ..+..+...   ....+++++|.+.|+...+.+ ..| ....|+.+...+...|++++|+..|++..+.... +
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~  364 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-V  364 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-c
Confidence              0   000111100   122467899999999999864 222 4567888889999999999999999999875322 3


Q ss_pred             HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744          343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL  422 (632)
Q Consensus       343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  422 (632)
                      ...|..+...+...|++++|...++++.+.... +..++..+..++...|++++|...|++..+..+.+...+..+..++
T Consensus       365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence            557778888899999999999999999887543 5667788888899999999999999999999888888999999999


Q ss_pred             HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH------hHHHHHHHHHhcC
Q 006744          423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVA------AYNCLTKGLCKIG  496 (632)
Q Consensus       423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g  496 (632)
                      .+.|++++|+..|++..... +-+...++.+...+...|++++|...|++.++.....+..      .++..+..+...|
T Consensus       444 ~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~  522 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQ  522 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhh
Confidence            99999999999999998753 4456788888999999999999999999998764321111      1222233344579


Q ss_pred             CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       497 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      ++++|.+++++++...  ..+...+..+...+...|++++|+++|++..+.
T Consensus       523 ~~~eA~~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       523 DFIEAENLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             hHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999987653  223446788999999999999999999998876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=1.7e-17  Score=175.91  Aligned_cols=324  Identities=11%  Similarity=0.007  Sum_probs=250.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE  259 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  259 (632)
                      ..|++++|..+++........ +...+..++.++...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+
T Consensus        54 ~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~  131 (656)
T PRK15174         54 RKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVAD  131 (656)
T ss_pred             hcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence            344555555555555554333 44555666677778999999999999998874 3456778888888999999999999


Q ss_pred             HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744          260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL  339 (632)
Q Consensus       260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  339 (632)
                      .++++.+.... +...+..+...+...|+.++|...++.+...... +...+..+ ..+...|++++|...++.+.+...
T Consensus       132 ~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~  208 (656)
T PRK15174        132 LAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFA  208 (656)
T ss_pred             HHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence            99999886433 5778888899999999999999999988776544 33333333 347888999999999998877643


Q ss_pred             CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH----HHHHHHHHHhCCCCChhHH
Q 006744          340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM----ALDVFEELKGKGYSSVPIY  415 (632)
Q Consensus       340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~  415 (632)
                      .++...+..+..++...|++++|...++++.+.... +......+..+|...|++++    |...|++..+..+.+..++
T Consensus       209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~  287 (656)
T PRK15174        209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIV  287 (656)
T ss_pred             CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            344445555667888999999999999998877543 45666778888888999885    8999999998887788899


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHh
Q 006744          416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV-AAYNCLTKGLCK  494 (632)
Q Consensus       416 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~  494 (632)
                      ..+...+...|++++|...+++..+.. +-+...+..+..++.+.|++++|...|+.+.+..  |+. ..+..+..++..
T Consensus       288 ~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~  364 (656)
T PRK15174        288 TLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQ  364 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHH
Confidence            999999999999999999999988753 3345566777888999999999999999998754  443 334445677889


Q ss_pred             cCCHHHHHHHHHHHhhcC
Q 006744          495 IGEIDAAMMLVRDCLGNV  512 (632)
Q Consensus       495 ~g~~~~A~~~~~~~~~~~  512 (632)
                      .|+.++|+..|+++++..
T Consensus       365 ~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        365 AGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             CCCHHHHHHHHHHHHHhC
Confidence            999999999999987653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.87  E-value=8.3e-18  Score=178.21  Aligned_cols=333  Identities=9%  Similarity=0.006  Sum_probs=272.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      ...++..+.+.|++++|+.+++...... +-+...+..++.++...|++++|.+.|+++.+.... +...+..+...+..
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~  122 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK  122 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence            4456677889999999999999998774 334556666777778899999999999999987554 67788899999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHH
Q 006744          286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKL  365 (632)
Q Consensus       286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  365 (632)
                      .|+.++|...++++.+.... +...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...
T Consensus       123 ~g~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~  199 (656)
T PRK15174        123 SKQYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDL  199 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHH
Confidence            99999999999999986443 67788889999999999999999999887654332 2233333 347889999999999


Q ss_pred             HHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh----HHHHHHHHhhC
Q 006744          366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK----ALYLFGKMRGL  441 (632)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~  441 (632)
                      ++.+.+............+..++...|++++|+..+++..+..+.+...+..+...|...|++++    |...|++..+.
T Consensus       200 ~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        200 ARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            99988775433444455566778899999999999999999887789999999999999999986    89999999875


Q ss_pred             CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH-
Q 006744          442 NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK-  520 (632)
Q Consensus       442 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-  520 (632)
                      . +.+...+..+...+...|++++|...++++.+... .+...+..+..+|.+.|++++|+..|++++...   |+... 
T Consensus       280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~---P~~~~~  354 (656)
T PRK15174        280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK---GVTSKW  354 (656)
T ss_pred             C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---ccchHH
Confidence            3 34566888899999999999999999999998642 246677788999999999999999999988653   44323 


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          521 YALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                      +..+..++...|+.++|+..|++..+..
T Consensus       355 ~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        355 NRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3335677889999999999999998763

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.86  E-value=6e-16  Score=167.75  Aligned_cols=474  Identities=11%  Similarity=-0.014  Sum_probs=279.8

Q ss_pred             chHHHHhhhhCCCChH------HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHH
Q 006744          105 PQVVTELSKLRRVTPD------LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELM  178 (632)
Q Consensus       105 ~~~~~~l~~~~~~~~~------~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~  178 (632)
                      ..++..+.++....|.      .+...+...|+++.|+..++.+...   .|+...|..++..+   +++++|..+++++
T Consensus        61 ~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l---dP~n~~~~~~La~i---~~~~kA~~~ye~l  134 (987)
T PRK09782         61 ATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR---HPGDARLERSLAAI---PVEVKSVTTVEEL  134 (987)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHHHHh---ccChhHHHHHHHH
Confidence            3677777776655443      3455666788999999999988764   45544444444333   8888998998887


Q ss_pred             HhcC-----------------------CHHHHHHHHHHHHhCCCCcCHHhHHHH-HHHHHhcCChhHHHHHHHHHHhCCC
Q 006744          179 DSQG-----------------------RIAEMLEILEKMRRNLCKPDVFAYTAM-IRVLAAERNLDACLRVWEEMKKDLV  234 (632)
Q Consensus       179 ~~~g-----------------------~~~~a~~~~~~m~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~~~  234 (632)
                      ....                       +.++|.+.++ .......|+..+.... ...|.+.|++++|++++.++.+.+ 
T Consensus       135 ~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-  212 (987)
T PRK09782        135 LAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-  212 (987)
T ss_pred             HHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-
Confidence            7432                       3455666666 4444444455555555 899999999999999999999986 


Q ss_pred             CcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhH-
Q 006744          235 EADVMAYVTLIMGLCK-GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR-ADLGIY-  311 (632)
Q Consensus       235 ~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~-  311 (632)
                      ..+......+..+|.. .++ +++..+++.    .+.-+......+++.|.+.|+.++|.++++++...... |...+| 
T Consensus       213 pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~  287 (987)
T PRK09782        213 TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWL  287 (987)
T ss_pred             CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHH
Confidence            3456667777778887 366 777777553    23357889999999999999999999998886532111 111000 


Q ss_pred             -----------------------------HHHHHHHH-------------------------------------------
Q 006744          312 -----------------------------NSIIGGLC-------------------------------------------  319 (632)
Q Consensus       312 -----------------------------~~li~~~~-------------------------------------------  319 (632)
                                                   -.++..+.                                           
T Consensus       288 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~  367 (987)
T PRK09782        288 YLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARL  367 (987)
T ss_pred             HHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHH
Confidence                                         00112222                                           


Q ss_pred             --------------------ccCCHHHHHHHHHHHHhC-C-CCCCHhcHHHHHHHHHhc---------------------
Q 006744          320 --------------------RVKQFDKAYKLFEVTVQD-D-LAPDFSTVNPLLVCCAEM---------------------  356 (632)
Q Consensus       320 --------------------~~g~~~~A~~~~~~m~~~-~-~~p~~~~~~~ll~~~~~~---------------------  356 (632)
                                          +.|+.++|.++|+..... + ..++......++..|.+.                     
T Consensus       368 ~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  447 (987)
T PRK09782        368 LYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQ  447 (987)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchh
Confidence                                234444555555443321 0 111111222333333333                     


Q ss_pred             ------------------------------------------CChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744          357 ------------------------------------------GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI  394 (632)
Q Consensus       357 ------------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (632)
                                                                ++.++|...+.+......  +......+...+...|++
T Consensus       448 ~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al~~~Gr~  525 (987)
T PRK09782        448 RQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQP--DAWQHRAVAYQAYQVEDY  525 (987)
T ss_pred             HHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCC--chHHHHHHHHHHHHCCCH
Confidence                                                      233334443333333221  111122222333456666


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII  474 (632)
Q Consensus       395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  474 (632)
                      ++|...|+++...... ...+..+..++.+.|++++|...+++..+.. +.+...+..+...+...|++++|...+++.+
T Consensus       526 eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL  603 (987)
T PRK09782        526 ATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSL  603 (987)
T ss_pred             HHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            6666666665444222 2334555566666677777777776666543 2222222233333444577777777777776


Q ss_pred             HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 006744          475 EMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV  554 (632)
Q Consensus       475 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  554 (632)
                      +..  |+...+..+..++.+.|++++|+..+++.+...+.  +...++.+...+...|++++|+.++++..+.. +-+..
T Consensus       604 ~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~  678 (987)
T PRK09782        604 NIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPA  678 (987)
T ss_pred             HhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            643  45666667777777777777777777776654322  23345556666777777777777777777653 45566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHH
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEH  600 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~  600 (632)
                      .+..+..++...|++++|...+++..+...........+..+....
T Consensus       679 a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~  724 (987)
T PRK09782        679 LIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR  724 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence            6777777777777777777777777766544323333444444333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=1.9e-16  Score=171.69  Aligned_cols=385  Identities=12%  Similarity=0.030  Sum_probs=234.5

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +...+..+...+...|++++|.++|++..+.. +.+...+..++.++...|++++|+..++++.+.... +.. +..+..
T Consensus        48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~  124 (765)
T PRK10049         48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAY  124 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHH
Confidence            44456666666666677777776666665542 233455556666666666777777766666665322 344 666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH------hcHHHHHHHHH-
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF------STVNPLLVCCA-  354 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~-  354 (632)
                      ++...|+.++|+..++++.+..+. +...+..+..++...|..++|++.++....   .|+.      .....++.... 
T Consensus       125 ~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~  200 (765)
T PRK10049        125 VYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFM  200 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc
Confidence            666667777777777666665443 444445556666666666666666654432   1211      01111122111 


Q ss_pred             ----hcCCh---hHHHHHHHHHHHC-CCCccc--cHHHHH---HHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHH
Q 006744          355 ----EMGRM---DNFFKLLAQMEKL-KFSVAA--DLEKFF---EFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG  420 (632)
Q Consensus       355 ----~~~~~---~~a~~~~~~~~~~-~~~~~~--~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~  420 (632)
                          ..+++   ++|+..++.+.+. ...|..  ......   +.++...|++++|+..|+.+.+.+.. ....-..+..
T Consensus       201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~  280 (765)
T PRK10049        201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVAS  280 (765)
T ss_pred             cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHH
Confidence                11122   5566666666643 111111  111111   12234557788888888887776532 1112222466


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CCC---HH
Q 006744          421 ALLEIGEVKKALYLFGKMRGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-----------VPS---VA  483 (632)
Q Consensus       421 ~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~  483 (632)
                      +|...|++++|+.+|+++.+..-..   .......+..++...|++++|.+.++.+.+...           .|+   ..
T Consensus       281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~  360 (765)
T PRK10049        281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ  360 (765)
T ss_pred             HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence            7888888888888888876542110   123455566677888888888888888776421           122   23


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744          484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM  563 (632)
Q Consensus       484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  563 (632)
                      .+..+...+...|++++|++++++++...+..  ...+..+...+...|++++|++.+++..+.. +.+...+..++..+
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~a  437 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTA  437 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHH
Confidence            44566777888899999999999887664333  4456667888888899999999999888864 45566777777788


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHH
Q 006744          564 CKHGTLEEARKVFTNLRERKLLTEANTIVYDEIL  597 (632)
Q Consensus       564 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~  597 (632)
                      ...|++++|..+++++++..... +....+....
T Consensus       438 l~~~~~~~A~~~~~~ll~~~Pd~-~~~~~~~~~~  470 (765)
T PRK10049        438 LDLQEWRQMDVLTDDVVAREPQD-PGVQRLARAR  470 (765)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence            88899999999999998876542 3333444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=1.9e-16  Score=171.67  Aligned_cols=401  Identities=10%  Similarity=0.011  Sum_probs=291.3

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +..-..-.+......|+.++|+++|.+..... +.+...+..+...+...|++++|.++|++..+.... +...+..++.
T Consensus        14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~   91 (765)
T PRK10049         14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL   91 (765)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            44445556677788999999999999998632 456667999999999999999999999999887433 5677888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      ++...|+.++|+..++++.+.... +.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.
T Consensus        92 ~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049         92 TLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence            999999999999999999987543 555 888899999999999999999999986433 44455667778888899999


Q ss_pred             HHHHHHHHHHCCCCc----cccHHHHHHHHh-----hhcccH---HHHHHHHHHHHhCCCC---ChhHH----HHHHHHH
Q 006744          362 FFKLLAQMEKLKFSV----AADLEKFFEFLV-----GKEERI---MMALDVFEELKGKGYS---SVPIY----NILMGAL  422 (632)
Q Consensus       362 a~~~~~~~~~~~~~~----~~~~~~~l~~~~-----~~~g~~---~~a~~~~~~~~~~~~~---~~~~~----~~li~~~  422 (632)
                      |.+.++.+... ...    ........+..+     ...+++   ++|++.++.+.+....   ....+    ...+.++
T Consensus       169 Al~~l~~~~~~-p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L  247 (765)
T PRK10049        169 ALGAIDDANLT-PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGAL  247 (765)
T ss_pred             HHHHHHhCCCC-HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH
Confidence            99888765541 100    000111122222     222344   7788888888754221   11111    1123455


Q ss_pred             HhcCChhhHHHHHHHHhhCCCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCH
Q 006744          423 LEIGEVKKALYLFGKMRGLNLE-VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP---SVAAYNCLTKGLCKIGEI  498 (632)
Q Consensus       423 ~~~g~~~~A~~~~~~m~~~~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~  498 (632)
                      ...|++++|+..|+++.+.+.. |+.. ...+..+|...|++++|...|+++.+.....   .......+..++...|++
T Consensus       248 l~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~  326 (765)
T PRK10049        248 LARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY  326 (765)
T ss_pred             HHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence            6779999999999999987532 3332 2224678999999999999999988753221   134566677788999999


Q ss_pred             HHHHHHHHHHhhcCC----------CCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006744          499 DAAMMLVRDCLGNVA----------SGPTE---FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK  565 (632)
Q Consensus       499 ~~A~~~~~~~~~~~~----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  565 (632)
                      ++|.++++++....+          ..|+.   ..+..+...+...|+.++|+++++++... .+.+...+..+...+..
T Consensus       327 ~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~  405 (765)
T PRK10049        327 PGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQA  405 (765)
T ss_pred             HHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHh
Confidence            999999999886532          12332   23455777888999999999999999987 37778899999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhh
Q 006744          566 HGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGL  613 (632)
Q Consensus       566 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l  613 (632)
                      .|+.++|++.+++..+...  +.....+...+ .+...++.+.+...+
T Consensus       406 ~g~~~~A~~~l~~al~l~P--d~~~l~~~~a~-~al~~~~~~~A~~~~  450 (765)
T PRK10049        406 RGWPRAAENELKKAEVLEP--RNINLEVEQAW-TALDLQEWRQMDVLT  450 (765)
T ss_pred             cCCHHHHHHHHHHHHhhCC--CChHHHHHHHH-HHHHhCCHHHHHHHH
Confidence            9999999999999998764  33333333333 444445555544444

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=1.1e-15  Score=140.86  Aligned_cols=257  Identities=11%  Similarity=0.118  Sum_probs=205.3

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006744          235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI  314 (632)
Q Consensus       235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  314 (632)
                      +-+..+|.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+    .+++.+|....++||..|+|++
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence            446789999999999999999999999999988888899999999976543322    7889999999999999999999


Q ss_pred             HHHHHccCCHHH----HHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH-HHHHHHHHHHC----CC----CccccHH
Q 006744          315 IGGLCRVKQFDK----AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN-FFKLLAQMEKL----KF----SVAADLE  381 (632)
Q Consensus       315 i~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~----~~----~~~~~~~  381 (632)
                      +++..+.|+++.    |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++...    .+    +.+...+
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            999999998875    45778899999999999999999999988887644 45555554432    22    2234456


Q ss_pred             HHHHHHhhhcccHHHHHHHHHHHHhCCC----C----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH
Q 006744          382 KFFEFLVGKEERIMMALDVFEELKGKGY----S----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA  453 (632)
Q Consensus       382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l  453 (632)
                      ...+..|....+.+.|.++-.-+....-    .    ...-|..+....|+....+.-+..|+.|.-.-+-|+..+...+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence            6677777888899989888776654321    1    2334677888889999999999999999988888999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 006744          454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI  495 (632)
Q Consensus       454 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  495 (632)
                      +++..-.|.++-.-++|..++..|...+......++..+++.
T Consensus       440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~  481 (625)
T KOG4422|consen  440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD  481 (625)
T ss_pred             HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence            999999999999999999999888665555544455555543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.83  E-value=7.8e-16  Score=156.12  Aligned_cols=457  Identities=12%  Similarity=0.075  Sum_probs=344.7

Q ss_pred             ChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH---------------------hcCCHHHHHH
Q 006744          131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD---------------------SQGRIAEMLE  189 (632)
Q Consensus       131 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~---------------------~~g~~~~a~~  189 (632)
                      ....++..+..+....  ..|+...+.|.+.|.-.|++..++.+...+.                     .+|++++|..
T Consensus       251 s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~  328 (1018)
T KOG2002|consen  251 SYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK  328 (1018)
T ss_pred             HHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            4567777777776655  4566788889999999999999998876554                     3689999999


Q ss_pred             HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC----ChhHHHHHHHHHH
Q 006744          190 ILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG----RVVRGHELFREMK  265 (632)
Q Consensus       190 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~  265 (632)
                      .|.+..+....--+..+--|.+.+.+.|+++.+...|+.+.+.. +-+..+.-+|...|+..+    ..+.|..++.+..
T Consensus       329 yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~  407 (1018)
T KOG2002|consen  329 YYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVL  407 (1018)
T ss_pred             HHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHH
Confidence            99888775433224556678899999999999999999998874 345667777777777664    5677888888777


Q ss_pred             HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC---C
Q 006744          266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV----DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---D  338 (632)
Q Consensus       266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~  338 (632)
                      +..+. |...|-.+...|-...-+ .++.+|....    ..+..+.....|.+...+...|++++|...|+.....   .
T Consensus       408 ~~~~~-d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~  485 (1018)
T KOG2002|consen  408 EQTPV-DSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEV  485 (1018)
T ss_pred             hcccc-cHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhh
Confidence            76533 778888887777655443 3366665544    4555578889999999999999999999999987754   2


Q ss_pred             CCCCHh------cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCCh
Q 006744          339 LAPDFS------TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV  412 (632)
Q Consensus       339 ~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  412 (632)
                      ..+|..      +-..+....-..++++.|.+.|..+.+..+. ....+.-+..+....+...+|...++.....+..++
T Consensus       486 ~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np  564 (1018)
T KOG2002|consen  486 ANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP  564 (1018)
T ss_pred             cCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc
Confidence            233331      2233555666778999999999999886432 222222233333456889999999999999888899


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcCHHHHHHHHHHHHH------------cCCHHHHHHHHHHHHHCCCC
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSLSFSIAIQCHVE------------SGDILEACECHNKIIEMSQV  479 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~  479 (632)
                      .++..+...+.+...+..|.+-|......- ..+|..+...|.+.|.+            .+..++|+++|.++++.. +
T Consensus       565 ~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-p  643 (1018)
T KOG2002|consen  565 NARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-P  643 (1018)
T ss_pred             HHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-c
Confidence            999999999999999999998777665542 34677777777776653            345788999999999865 3


Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHH
Q 006744          480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSA  558 (632)
Q Consensus       480 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~  558 (632)
                      -|...-|.+.-+++..|++++|..+|.++.+...  -...+|-.+...|...|++..|+++|+...+. +-..+..+...
T Consensus       644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~  721 (1018)
T KOG2002|consen  644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY  721 (1018)
T ss_pred             chhhhccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence            4777778888999999999999999999886533  23345667999999999999999999986654 44567889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHH
Q 006744          559 IISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILI  598 (632)
Q Consensus       559 l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~  598 (632)
                      |..++.+.|.+.+|.+.+.......+.  ...+.|+..+.
T Consensus       722 Lara~y~~~~~~eak~~ll~a~~~~p~--~~~v~FN~a~v  759 (1018)
T KOG2002|consen  722 LARAWYEAGKLQEAKEALLKARHLAPS--NTSVKFNLALV  759 (1018)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCc--cchHHhHHHHH
Confidence            999999999999999999888776543  45565555443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.82  E-value=6.8e-15  Score=156.32  Aligned_cols=394  Identities=11%  Similarity=0.067  Sum_probs=225.9

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHH
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDV--FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG  257 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  257 (632)
                      ++|+++.|++.|++..+..  |+.  ..+ .++..+...|+.++|+..+++..... .........+...+...|++++|
T Consensus        46 r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         46 RAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             hCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            3466666666677766643  332  233 77777778888888888888877211 12233333335577777888888


Q ss_pred             HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      .++|+++.+.... +...+..++..+...++.++|++.++++...  .|+...+-.++..+...++..+|++.++++.+.
T Consensus       122 iely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~  198 (822)
T PRK14574        122 LALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL  198 (822)
T ss_pred             HHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence            8888888887555 5667777778888888888888888888776  344445544444444456665688888888876


Q ss_pred             CCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccc------cHHHHHHHHh---h--hccc---HHHHHHHHHH
Q 006744          338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA------DLEKFFEFLV---G--KEER---IMMALDVFEE  403 (632)
Q Consensus       338 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~---~--~~g~---~~~a~~~~~~  403 (632)
                      +. -+...+..++.+..+.|-...|.++..+-... +.+..      ......+..-   .  ...+   .+.|..-++.
T Consensus       199 ~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~  276 (822)
T PRK14574        199 AP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN  276 (822)
T ss_pred             CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence            42 24555566667777777766666555432110 00000      0000000000   0  1111   2333333444


Q ss_pred             HHh---CCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744          404 LKG---KGYSS----VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM  476 (632)
Q Consensus       404 ~~~---~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  476 (632)
                      +..   ..+..    ..+.--.+-++...|++.++++.|+.|...+.+.-..+-..+..+|...+..++|..+|+.+...
T Consensus       277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~  356 (822)
T PRK14574        277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS  356 (822)
T ss_pred             HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence            333   11111    11222344555666666677777776666664434445566666666677777777777666543


Q ss_pred             CC-----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC------------CCChHHH-HHHHHHHHHHcCCHHHHH
Q 006744          477 SQ-----VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA------------SGPTEFK-YALTILHVCRSGEAEKII  538 (632)
Q Consensus       477 ~~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------------~~p~~~~-~~~l~~~~~~~g~~~~a~  538 (632)
                      ..     .++......|..+|...+++++|..+++++.+..+            ..||-.. +..++..+...|++.+|+
T Consensus       357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae  436 (822)
T PRK14574        357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ  436 (822)
T ss_pred             cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence            21     12233345566666666777777777666654222            1122222 223445556666777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       539 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      +.++++.... |-|..+...+.+.+...|...+|.+.++.....+
T Consensus       437 ~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~  480 (822)
T PRK14574        437 KKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA  480 (822)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence            7777666553 5566666666666666777777777666655553

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.81  E-value=1e-14  Score=154.92  Aligned_cols=433  Identities=12%  Similarity=0.019  Sum_probs=310.3

Q ss_pred             HHHhcCCChhHHHHHHHHhhhcCCCCCCH--HHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744          124 EVLKVENNPTLASKFFHWAGKQKGYKHNF--ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP  201 (632)
Q Consensus       124 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  201 (632)
                      .+..+.|++..|+..|+.+.+.   .|+.  ..+ .++..++..|+.++|+.+++....                . -..
T Consensus        42 ii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~----------------p-~n~  100 (822)
T PRK14574         42 IIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQS----------------S-MNI  100 (822)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhcc----------------C-CCC
Confidence            3445678999999999998764   3543  233 788888888777776666554431                0 012


Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      .......+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++++.+.  .|+...+..++.
T Consensus       101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~lay  177 (822)
T PRK14574        101 SSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSY  177 (822)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHH
Confidence            23333344567888899999999999999875 345677778888899999999999999999876  345555655555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhc------HHHHHHHH--
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST------VNPLLVCC--  353 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~------~~~ll~~~--  353 (632)
                      .+...++..+|++.++++.+..+. +...+..++.++.+.|-...|+++..+-... +.+...-      ....++.-  
T Consensus       178 L~~~~~~~~~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~  255 (822)
T PRK14574        178 LNRATDRNYDALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVL  255 (822)
T ss_pred             HHHhcchHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhccc
Confidence            555566776799999999998654 6778888899999999999998877653211 1111100      01111100  


Q ss_pred             ---HhcCC---hhHHHHHHHHHHHC-CCCccc--cHHH---HHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHH
Q 006744          354 ---AEMGR---MDNFFKLLAQMEKL-KFSVAA--DLEK---FFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMG  420 (632)
Q Consensus       354 ---~~~~~---~~~a~~~~~~~~~~-~~~~~~--~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~  420 (632)
                         ...++   .+.|+.-++.+... +..|..  ....   -.+.++...|++.++++.|+.+...+.+ ...+-..+.+
T Consensus       256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad  335 (822)
T PRK14574        256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS  335 (822)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence               01122   23344455554442 111211  1122   2344567889999999999999988865 7778889999


Q ss_pred             HHHhcCChhhHHHHHHHHhhCC-----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----------CC--C-
Q 006744          421 ALLEIGEVKKALYLFGKMRGLN-----LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ-----------VP--S-  481 (632)
Q Consensus       421 ~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~p--~-  481 (632)
                      +|...++.++|+.+|+++....     ..++......|.-++...+++++|..+++.+.+...           .|  | 
T Consensus       336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~  415 (822)
T PRK14574        336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW  415 (822)
T ss_pred             HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence            9999999999999999986643     123444467889999999999999999999997322           12  2 


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS  561 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  561 (632)
                      ...+..++..+...|++.+|++.+++++...+.  |......+...+...|.+.+|++.++.+... -+-+..+....+.
T Consensus       416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~--n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~  492 (822)
T PRK14574        416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA--NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAE  492 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHH
Confidence            333455677889999999999999999876443  4455666888889999999999999877766 3566778888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          562 GMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       562 ~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      ++...|++++|.++.+.+.+....
T Consensus       493 ~al~l~e~~~A~~~~~~l~~~~Pe  516 (822)
T PRK14574        493 TAMALQEWHQMELLTDDVISRSPE  516 (822)
T ss_pred             HHHhhhhHHHHHHHHHHHHhhCCC
Confidence            999999999999999999888654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=9.9e-14  Score=150.69  Aligned_cols=441  Identities=11%  Similarity=0.006  Sum_probs=308.9

Q ss_pred             HhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHH--------HHhCCChhHHhHHHH-----------------HHHh
Q 006744          126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYC--------LSRNNLFRAADQVPE-----------------LMDS  180 (632)
Q Consensus       126 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--------~~~~~~~~~a~~l~~-----------------~~~~  180 (632)
                      +...+++..|..+|+.+....  +-+...+..+...        |.+.+...++++ ..                 ....
T Consensus       118 La~i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~  194 (987)
T PRK09782        118 LAAIPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIY  194 (987)
T ss_pred             HHHhccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHH
Confidence            344477888999999987754  3445555555554        555544444444 22                 2224


Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA-ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE  259 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  259 (632)
                      .|++++|++++.++.+.++. +......|..+|.. .++ +++..+++..    ++-|...+..+...+.+.|+.++|.+
T Consensus       195 l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~  268 (987)
T PRK09782        195 LKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQH  268 (987)
T ss_pred             HhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence            57899999999999998754 56667777788887 477 8888886642    24688899999999999999999999


Q ss_pred             HHHHHHHcCCc-ccHHh--H----------------------------HHHHHHH-------------------------
Q 006744          260 LFREMKENGIL-IDRAI--Y----------------------------GVLIEGL-------------------------  283 (632)
Q Consensus       260 ~~~~m~~~~~~-p~~~~--~----------------------------~~li~~~-------------------------  283 (632)
                      +++++...-.. |...+  |                            ..++..+                         
T Consensus       269 ~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  348 (987)
T PRK09782        269 YLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEER  348 (987)
T ss_pred             HHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHH
Confidence            99887532111 10000  0                            0001111                         


Q ss_pred             --------------------------------------HhcCCHHHHHHHHHHHHHC-C-C-------------------
Q 006744          284 --------------------------------------VGEGKVGKACDLLKDLVDS-G-Y-------------------  304 (632)
Q Consensus       284 --------------------------------------~~~g~~~~a~~~~~~m~~~-g-~-------------------  304 (632)
                                                            .+.|+.++|.++|+..... + -                   
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~  428 (987)
T PRK09782        349 YAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPY  428 (987)
T ss_pred             HhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCc
Confidence                                                  2334445555554443321 0 0                   


Q ss_pred             -------------------------------------------CC--CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744          305 -------------------------------------------RA--DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL  339 (632)
Q Consensus       305 -------------------------------------------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  339 (632)
                                                                 ..  +...|..+..++.. ++.++|+..+.+....  
T Consensus       429 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--  505 (987)
T PRK09782        429 LATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--  505 (987)
T ss_pred             ccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--
Confidence                                                       01  22333444444444 5666777766666544  


Q ss_pred             CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744          340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM  419 (632)
Q Consensus       340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  419 (632)
                      .|+......+...+...|++++|...++++....  +.......+..++.+.|+.++|...++...+..+.....+..+.
T Consensus       506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La  583 (987)
T PRK09782        506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLH  583 (987)
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            3554443344455568999999999999986653  23333455667788899999999999999988765555555555


Q ss_pred             HHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 006744          420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID  499 (632)
Q Consensus       420 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  499 (632)
                      ..+...|++++|...+++..+.  .|+...+..+..++.+.|+.++|...+++..+.. +.+...++.+..++...|+++
T Consensus       584 ~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~e  660 (987)
T PRK09782        584 AQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIA  660 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence            5556679999999999999874  5678889999999999999999999999999865 235778888999999999999


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       500 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      +|+..+++.++..+  -+...+..+..++...|++++|+..+++..+.. +-+..+.........+..+++.|.+-+++.
T Consensus       661 eAi~~l~~AL~l~P--~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        661 QSREMLERAHKGLP--DDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             HHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999987643  234567779999999999999999999999874 444467777777788888888888888777


Q ss_pred             HHCCCCC
Q 006744          580 RERKLLT  586 (632)
Q Consensus       580 ~~~~~~~  586 (632)
                      ...++..
T Consensus       738 ~~~~~~~  744 (987)
T PRK09782        738 WTFSFDS  744 (987)
T ss_pred             hhcCccc
Confidence            6665543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.78  E-value=2e-14  Score=146.12  Aligned_cols=476  Identities=9%  Similarity=0.049  Sum_probs=282.6

Q ss_pred             CCChhHHHHHHHHhhh-cCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC---------------------CHHH
Q 006744          129 ENNPTLASKFFHWAGK-QKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG---------------------RIAE  186 (632)
Q Consensus       129 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g---------------------~~~~  186 (632)
                      .+++..|+.+|..+.+ .+...+|+..  .+..++.+.|+.+.|+..|.+..+..                     .+..
T Consensus       177 kkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~  254 (1018)
T KOG2002|consen  177 KKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKK  254 (1018)
T ss_pred             cccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHH
Confidence            3578888988888654 3456667543  23466778888888877777665432                     4455


Q ss_pred             HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--cCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE--ADVMAYVTLIMGLCKGGRVVRGHELFREM  264 (632)
Q Consensus       187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m  264 (632)
                      +..++...-..+. -|.++.+.|.+.|.-.|+++.++.+...+......  .-...|-.+.++|-..|++++|...|.+.
T Consensus       255 ~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s  333 (1018)
T KOG2002|consen  255 GVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES  333 (1018)
T ss_pred             HHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            5666665554432 36667788888888888888888888877764311  12344667788888888888888888777


Q ss_pred             HHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC----CHHHHHHHHHHHHhC---
Q 006744          265 KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK----QFDKAYKLFEVTVQD---  337 (632)
Q Consensus       265 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~---  337 (632)
                      .+..-.--...+-.|.+.|.+.|+++.+...|+.+...... +..+...|...|...+    ..+.|..++.+..+.   
T Consensus       334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~  412 (1018)
T KOG2002|consen  334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV  412 (1018)
T ss_pred             HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc
Confidence            66533212334556677788888888888888777765332 3444445555554443    234444444433332   


Q ss_pred             ----------------------------------CCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCccc--
Q 006744          338 ----------------------------------DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL---KFSVAA--  378 (632)
Q Consensus       338 ----------------------------------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--  378 (632)
                                                        +..+.....|.+...+...|+++.|...|+.....   ...++.  
T Consensus       413 d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~  492 (1018)
T KOG2002|consen  413 DSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK  492 (1018)
T ss_pred             cHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence                                              22233344444444444555555555555544333   011111  


Q ss_pred             ----cHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH
Q 006744          379 ----DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI  454 (632)
Q Consensus       379 ----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll  454 (632)
                          .+-..+..++-..++.+.|.+.|..+.+..+.-+..|--++...-..+...+|...+....... ..+...++.+.
T Consensus       493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G  571 (1018)
T KOG2002|consen  493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLG  571 (1018)
T ss_pred             cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHH
Confidence                1122223333344455555555555555443333333333322223345555666665555432 23333333344


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHh------------cCCHHHHHHHHHHHhhcCCCCChHHHH
Q 006744          455 QCHVESGDILEACECHNKIIEMS-QVPSVAAYNCLTKGLCK------------IGEIDAAMMLVRDCLGNVASGPTEFKY  521 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~p~~~~~  521 (632)
                      ..+.....+..|.+-|..+.+.- ..+|..+..+|.+.|..            .+..++|+++|.++++..  ..|.+.-
T Consensus       572 ~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d--pkN~yAA  649 (1018)
T KOG2002|consen  572 NLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND--PKNMYAA  649 (1018)
T ss_pred             HHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--cchhhhc
Confidence            45555555556666555544432 22466666666665442            245678888888887642  3455666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHh
Q 006744          522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHM  601 (632)
Q Consensus       522 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~  601 (632)
                      |.+...++..|++.+|..+|.+..+.. ..+..+|..+..+|..+|++..|+++|+...++-. +.++......|-.++.
T Consensus       650 NGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~-~~~~~~vl~~Lara~y  727 (1018)
T KOG2002|consen  650 NGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY-KKNRSEVLHYLARAWY  727 (1018)
T ss_pred             cchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHH
Confidence            777777888899999999999888874 34566788888999999999999999988877655 3445556666666666


Q ss_pred             hhchhHHHHhhh
Q 006744          602 KKKTADLVLSGL  613 (632)
Q Consensus       602 ~~~~~~~v~~~l  613 (632)
                      +.+........+
T Consensus       728 ~~~~~~eak~~l  739 (1018)
T KOG2002|consen  728 EAGKLQEAKEAL  739 (1018)
T ss_pred             HhhhHHHHHHHH
Confidence            666655554444

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.2e-14  Score=132.46  Aligned_cols=308  Identities=15%  Similarity=0.117  Sum_probs=222.9

Q ss_pred             CChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHH--hCCChh-HHhHHHHHHHhcC--------CHHHHHHHHHHHHhCC
Q 006744          130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLS--RNNLFR-AADQVPELMDSQG--------RIAEMLEILEKMRRNL  198 (632)
Q Consensus       130 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~-~a~~l~~~~~~~g--------~~~~a~~~~~~m~~~~  198 (632)
                      +....+.-+|+.+. +.|.+-+...--.|+..-+  ...... .-++.|-.|.+.|        +-+-|.-+|+..    
T Consensus       129 ~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~----  203 (625)
T KOG4422|consen  129 REVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETL----  203 (625)
T ss_pred             cccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhc----
Confidence            45667777887764 4666666666666654433  222222 2233344444322        112223333333    


Q ss_pred             CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744          199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV  278 (632)
Q Consensus       199 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  278 (632)
                       +.+..+|..||.++|+.-..+.|.++|++-.....+.+..+||.+|.+-.-..    ..+++.+|......||..|||+
T Consensus       204 -PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa  278 (625)
T KOG4422|consen  204 -PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA  278 (625)
T ss_pred             -CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence             24677899999999999999999999999988877899999999998755433    3889999999999999999999


Q ss_pred             HHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH-HHHHHHHHHhC----CCCC----CHhc
Q 006744          279 LIEGLVGEGKVGK----ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK-AYKLFEVTVQD----DLAP----DFST  345 (632)
Q Consensus       279 li~~~~~~g~~~~----a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~----~~~p----~~~~  345 (632)
                      ++.+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++...    .++|    |..-
T Consensus       279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F  358 (625)
T KOG4422|consen  279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF  358 (625)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence            9999999998765    56688899999999999999999999999888754 55555555432    2333    3344


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCC----CCc---cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHH
Q 006744          346 VNPLLVCCAEMGRMDNFFKLLAQMEKLK----FSV---AADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI  417 (632)
Q Consensus       346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~  417 (632)
                      |...+..|.+..+.+.|.++..-+....    +.+   ....+..+..+.|+....+.-...|+.|.-.-.. +..+...
T Consensus       359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~  438 (625)
T KOG4422|consen  359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH  438 (625)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence            6677888999999999998877664432    111   1223455666678888899999999988765543 7777888


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCcCH
Q 006744          418 LMGALLEIGEVKKALYLFGKMRGLNLEVNS  447 (632)
Q Consensus       418 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  447 (632)
                      ++++.-..|.++-.-++|..+...|..-+.
T Consensus       439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~  468 (625)
T KOG4422|consen  439 LLRALDVANRLEVIPRIWKDSKEYGHTFRS  468 (625)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence            889999999999999999999887744333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=3.2e-12  Score=119.96  Aligned_cols=440  Identities=13%  Similarity=0.097  Sum_probs=332.8

Q ss_pred             CChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh------------------cCCHHHHHHHH
Q 006744          130 NNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS------------------QGRIAEMLEIL  191 (632)
Q Consensus       130 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~------------------~g~~~~a~~~~  191 (632)
                      ++...|..+|+.+....  ..+...|-..+.+=.+++....|+.++++...                  .|++..|..+|
T Consensus        87 ~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            36778999999887643  56777888889999999999999999987652                  58999999999


Q ss_pred             HHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CC-
Q 006744          192 EKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GI-  269 (632)
Q Consensus       192 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~-  269 (632)
                      ++..+  ..|+..+|++.|+.=.+-+.++.|..+|+...-.  .|++.+|--....=.+.|++..|..+|+...+. |- 
T Consensus       165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d  240 (677)
T KOG1915|consen  165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD  240 (677)
T ss_pred             HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence            99887  5799999999999999999999999999998754  699999998888889999999999999988763 11 


Q ss_pred             cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHH--------HHHHHhCCCC
Q 006744          270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKL--------FEVTVQDDLA  340 (632)
Q Consensus       270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~--------~~~m~~~~~~  340 (632)
                      .-+...|.+....=.++..++.|.-+|+-.++.-+.- ....|..+...--+-|+.......        |+.++..+ .
T Consensus       241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p  319 (677)
T KOG1915|consen  241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-P  319 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-C
Confidence            1133455555555566778899999998888763321 134455555444455665444433        34444443 3


Q ss_pred             CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc------HHHHHHHHh---hhcccHHHHHHHHHHHHhCCCCC
Q 006744          341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD------LEKFFEFLV---GKEERIMMALDVFEELKGKGYSS  411 (632)
Q Consensus       341 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~  411 (632)
                      -|..+|-..++.-...|+.+...++|++.+..-.+....      +|-.+-.++   ....+++.+.++|+...+.-+..
T Consensus       320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk  399 (677)
T KOG1915|consen  320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK  399 (677)
T ss_pred             CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence            477788888888888899999999999998764432221      121221121   35788999999999888743333


Q ss_pred             hhH----HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 006744          412 VPI----YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC  487 (632)
Q Consensus       412 ~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  487 (632)
                      ..+    |-....--.++.++..|.+++....  |..|-..+|...|..-.+.++++.+..+|++.++.+. -+..+|..
T Consensus       400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~k  476 (677)
T KOG1915|consen  400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSK  476 (677)
T ss_pred             cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHH
Confidence            333    4444555567889999999998776  5789999999999999999999999999999999763 36788888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---
Q 006744          488 LTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC---  564 (632)
Q Consensus       488 li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~---  564 (632)
                      ....-...|+.|.|..+|.-++......-....|.+.|.--...|.++.|..+++++++.  .+...+|.+...--.   
T Consensus       477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~  554 (677)
T KOG1915|consen  477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASAS  554 (677)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhcccc
Confidence            888888999999999999998877555555566777777777889999999999999987  344556666554332   


Q ss_pred             --hcC-----------CHHHHHHHHHHHHH
Q 006744          565 --KHG-----------TLEEARKVFTNLRE  581 (632)
Q Consensus       565 --~~g-----------~~~~A~~~~~~m~~  581 (632)
                        +.|           ++..|+++|++...
T Consensus       555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  555 EGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             ccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence              344           57789999988743

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.73  E-value=1e-14  Score=135.46  Aligned_cols=437  Identities=14%  Similarity=0.098  Sum_probs=272.9

Q ss_pred             hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH-----------------------hcCCHHHHH
Q 006744          132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD-----------------------SQGRIAEML  188 (632)
Q Consensus       132 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~-----------------------~~g~~~~a~  188 (632)
                      ...|+..|+-+.+..-|+.....--.+.+.+.+.+.|.+|++.+....                       +.|.+++|+
T Consensus       217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai  296 (840)
T KOG2003|consen  217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI  296 (840)
T ss_pred             HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence            456677777665544333322222334566677777777777766443                       346788888


Q ss_pred             HHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC------------HHhHHHHH-----HHHHhc
Q 006744          189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD------------VMAYVTLI-----MGLCKG  251 (632)
Q Consensus       189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------------~~~~~~li-----~~~~~~  251 (632)
                      .-|+...+.  .|+..+--.|+-.+..-|+.++..+.|.+|...-..+|            ....+..|     .-.-+.
T Consensus       297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~  374 (840)
T KOG2003|consen  297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE  374 (840)
T ss_pred             hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence            888876654  36655544444455567777888888888765432222            22222222     111111


Q ss_pred             C--ChhHHHHHHHHHHHcCCcccHH-------------hHH--------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006744          252 G--RVVRGHELFREMKENGILIDRA-------------IYG--------VLIEGLVGEGKVGKACDLLKDLVDSGYRADL  308 (632)
Q Consensus       252 g--~~~~a~~~~~~m~~~~~~p~~~-------------~~~--------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  308 (632)
                      +  +.++++-.-.+++.--+.|+-.             .|.        .-..-|.+.|+++.|+++++-+.+..-+.-.
T Consensus       375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s  454 (840)
T KOG2003|consen  375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS  454 (840)
T ss_pred             hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence            1  1222222222222222222211             010        1122456778888888887777665333222


Q ss_pred             hhHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHH
Q 006744          309 GIYNSIIGGLCR--VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF  386 (632)
Q Consensus       309 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  386 (632)
                      ..-+.|-..+.-  -.++..|.++-+..+..+.. +......-.+.....|++++|.+.+++....+-.....+++. ..
T Consensus       455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-gl  532 (840)
T KOG2003|consen  455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GL  532 (840)
T ss_pred             HHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cc
Confidence            233333222222  33566666666655432211 111111112233456889999999998887654433333332 22


Q ss_pred             HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 006744          387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA  466 (632)
Q Consensus       387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a  466 (632)
                      .+...|++++|++.|-++...-..+..+.-.+...|-...+...|++++.+.... ++-|...++.+...|-+.|+...|
T Consensus       533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa  611 (840)
T KOG2003|consen  533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA  611 (840)
T ss_pred             cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence            3567899999999998876554447778888888898899999999998777653 566778888899999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 006744          467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC-RSGEAEKIIEVLNEMT  545 (632)
Q Consensus       467 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~  545 (632)
                      .+++-.-... +.-+..+...|...|....-+++|+.+|++.-   -+.|+...|..++..|. +.|++++|.++++...
T Consensus       612 fq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~h  687 (840)
T KOG2003|consen  612 FQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIH  687 (840)
T ss_pred             hhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            8887665443 34578888888888888888999999998864   46799999998888776 5699999999999988


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      .+ ++.|......|++.+...|.. ++.++-+++
T Consensus       688 rk-fpedldclkflvri~~dlgl~-d~key~~kl  719 (840)
T KOG2003|consen  688 RK-FPEDLDCLKFLVRIAGDLGLK-DAKEYADKL  719 (840)
T ss_pred             Hh-CccchHHHHHHHHHhccccch-hHHHHHHHH
Confidence            76 788899999999988887753 344444333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.72  E-value=1.7e-11  Score=119.71  Aligned_cols=440  Identities=12%  Similarity=0.067  Sum_probs=310.4

Q ss_pred             HHHHhCCChhHHhHHHHHHH------------------hcCCHHHHHHHHHH----HHhCCCCcCHHhHHHHHHHHHhcC
Q 006744          160 YCLSRNNLFRAADQVPELMD------------------SQGRIAEMLEILEK----MRRNLCKPDVFAYTAMIRVLAAER  217 (632)
Q Consensus       160 ~~~~~~~~~~~a~~l~~~~~------------------~~g~~~~a~~~~~~----m~~~~~~~~~~~~~~li~~~~~~g  217 (632)
                      -+|++..-++.|..+++...                  .+|..+....++++    +...|+..+...|-.=...|-..|
T Consensus       414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag  493 (913)
T KOG0495|consen  414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG  493 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence            34455555666666665544                  24555555555544    345577777777777777777777


Q ss_pred             ChhHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 006744          218 NLDACLRVWEEMKKDLVEA--DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL  295 (632)
Q Consensus       218 ~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  295 (632)
                      ..-.+..+....+..|++-  -..||+.-.+.|.+.+.++-|..+|....+.-. -+...|...+..=-..|..++...+
T Consensus       494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~hgt~Esl~Al  572 (913)
T KOG0495|consen  494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKSHGTRESLEAL  572 (913)
T ss_pred             ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHhcCcHHHHHHH
Confidence            7777777777776666543  235677777788888888888888888777533 3667777777777778888888888


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006744          296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS  375 (632)
Q Consensus       296 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  375 (632)
                      |++....-.+ ....|-.....+-..|+...|..++....+.... +...|...+..-....+++.|..+|.+....  .
T Consensus       573 lqkav~~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s  648 (913)
T KOG0495|consen  573 LQKAVEQCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S  648 (913)
T ss_pred             HHHHHHhCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence            8888876443 5666777777788889999999999888876544 6677878888888888999999999887663  4


Q ss_pred             ccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHH
Q 006744          376 VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAI  454 (632)
Q Consensus       376 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll  454 (632)
                      ++..++.-.+..-.-.++.++|.+++++..+..+.-...|-.+.+.+-+.++++.|...|..-.+.  -|+.. .|..+.
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~--cP~~ipLWllLa  726 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK--CPNSIPLWLLLA  726 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc--CCCCchHHHHHH
Confidence            566666666666667788999999998888877666777888888888899999888888766553  45544 445555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCH
Q 006744          455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA  534 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  534 (632)
                      ..--+.|.+-.|..++++..-.+. -+...|-..|.+-.+.|..+.|..++.++++.++  .+...|..-|....+.++-
T Consensus       727 kleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp--~sg~LWaEaI~le~~~~rk  803 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECP--SSGLLWAEAIWLEPRPQRK  803 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccchhHHHHHHhccCcccc
Confidence            555677888999999998877653 3677888889999999999999998888887642  3344565555555555554


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744          535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK  614 (632)
Q Consensus       535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~  614 (632)
                      ...++.+++     +.-|..+.-.+...+....+++.|++.|.+..+.+......-..|-.....++...+...|++...
T Consensus       804 Tks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~  878 (913)
T KOG0495|consen  804 TKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCE  878 (913)
T ss_pred             hHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            444444332     456778888888888888999999999999988876532222223333334444445555555443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.71  E-value=3.9e-12  Score=128.88  Aligned_cols=344  Identities=12%  Similarity=0.045  Sum_probs=245.1

Q ss_pred             HHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHH------------------HHHHHhcCCHH
Q 006744          124 EVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV------------------PELMDSQGRIA  185 (632)
Q Consensus       124 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l------------------~~~~~~~g~~~  185 (632)
                      .++-..|+.+.|.+++..++++.  +.+...|..|...|-..|+.+++...                  .+...++|.++
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence            34445688889999998888765  56777888888888888888877553                  34445778999


Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH----hHHHHHHHHHhcCChhHHHHHH
Q 006744          186 EMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM----AYVTLIMGLCKGGRVVRGHELF  261 (632)
Q Consensus       186 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~li~~~~~~g~~~~a~~~~  261 (632)
                      +|.-+|.+.++..+. +...+---+..|-+.|+...|.+.|.++....-+.|..    .--.+++.+...++.+.|.+.+
T Consensus       225 qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l  303 (895)
T KOG2076|consen  225 QARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL  303 (895)
T ss_pred             HHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999887543 44444455677889999999999999998764222222    2223456677777778899888


Q ss_pred             HHHHHc-CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHhhHHH
Q 006744          262 REMKEN-GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY---------------------------RADLGIYNS  313 (632)
Q Consensus       262 ~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~~~~~~~~~  313 (632)
                      +..... +-..+...++.++..|.+...++.|......+.....                           .++..++ -
T Consensus       304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r  382 (895)
T KOG2076|consen  304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R  382 (895)
T ss_pred             HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence            887662 2233566788899999999999999988877766211                           1222221 1


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc
Q 006744          314 IIGGLCRVKQFDKAYKLFEVTVQDD--LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE  391 (632)
Q Consensus       314 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  391 (632)
                      ++-++.+.+..+....+.....+..  +.-+...|.-+.+++...|++..|..++..+......-+..++-.+..+|...
T Consensus       383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l  462 (895)
T KOG2076|consen  383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL  462 (895)
T ss_pred             HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence            2233344444444444444455554  33355678888899999999999999999998876665677888888899999


Q ss_pred             ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh--------CCCCcCHHHHHHHHHHHHHcCCH
Q 006744          392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG--------LNLEVNSLSFSIAIQCHVESGDI  463 (632)
Q Consensus       392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~t~~~ll~~~~~~g~~  463 (632)
                      |..++|.+.|+.+....+.+..+--.|...+-+.|+.++|.+.++.+..        .+..|+..........+...|+.
T Consensus       463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~  542 (895)
T KOG2076|consen  463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR  542 (895)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence            9999999999999988888877888888889999999999999988642        22344555555555566677776


Q ss_pred             HHHHHHHH
Q 006744          464 LEACECHN  471 (632)
Q Consensus       464 ~~a~~~~~  471 (632)
                      ++-..+-.
T Consensus       543 E~fi~t~~  550 (895)
T KOG2076|consen  543 EEFINTAS  550 (895)
T ss_pred             HHHHHHHH
Confidence            66444433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=1.3e-11  Score=115.09  Aligned_cols=424  Identities=13%  Similarity=0.075  Sum_probs=279.9

Q ss_pred             CHHHHHHHHHHHHhCCChhHHhHHHHHHHhc--------------------CCHHHHHHHHHHHHhCCCCcCH----HhH
Q 006744          151 NFASYNALAYCLSRNNLFRAADQVPELMDSQ--------------------GRIAEMLEILEKMRRNLCKPDV----FAY  206 (632)
Q Consensus       151 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~--------------------g~~~~a~~~~~~m~~~~~~~~~----~~~  206 (632)
                      +..+...|..-|.......+|...++.+.+.                    ..+..|+..++-....-+..+.    ...
T Consensus       200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil  279 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL  279 (840)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence            3444455667777778888888888877642                    2678888888776654322222    334


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc------------cHH
Q 006744          207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI------------DRA  274 (632)
Q Consensus       207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p------------~~~  274 (632)
                      +.+.-.+.+.|.++.|+..|+...+.  .|+..+--.|+-++..-|+-++..+.|.+|+..-..+            +..
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~  357 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN  357 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence            45555678899999999999987766  5787665555656666789999999999997643222            222


Q ss_pred             hHHHHH-----HHHHhcC--CHHHHHHHHHHHHHCCCCCCHh-------------hHH--------HHHHHHHccCCHHH
Q 006744          275 IYGVLI-----EGLVGEG--KVGKACDLLKDLVDSGYRADLG-------------IYN--------SIIGGLCRVKQFDK  326 (632)
Q Consensus       275 ~~~~li-----~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~-------------~~~--------~li~~~~~~g~~~~  326 (632)
                      ..+.-|     .-.-+.+  +.++++-.--+++.--+.|+-.             .+.        .-...|.++|+++.
T Consensus       358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~  437 (840)
T KOG2003|consen  358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG  437 (840)
T ss_pred             HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence            222222     1111111  1122222112222111122210             010        11235788999999


Q ss_pred             HHHHHHHHHhCCCCCCHhcHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744          327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAE--MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL  404 (632)
Q Consensus       327 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  404 (632)
                      |+++++-..+.+-+.-...-+.|-..+.-  ..++..|.++-+.....+-- +......-.......|++++|.+.|++.
T Consensus       438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~ykea  516 (840)
T KOG2003|consen  438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFYKEA  516 (840)
T ss_pred             HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence            99999888766443333333333322222  34677777777766543211 1111111222234579999999999999


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHh
Q 006744          405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA  484 (632)
Q Consensus       405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  484 (632)
                      ...+...+...-.+.-.+-..|++++|+..|-++... +.-+...+..+...|....+...|.+++.+.... +..|+.+
T Consensus       517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i  594 (840)
T KOG2003|consen  517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI  594 (840)
T ss_pred             HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence            9886554444445556677899999999999887653 3456677788888999999999999999877652 4456899


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC  564 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  564 (632)
                      ...|.+.|-+.|+-..|.+.+-+-..-.+..  ..+..-|..-|....-+++++.+|++..-  +.|+..-|..++..|.
T Consensus       595 lskl~dlydqegdksqafq~~ydsyryfp~n--ie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~  670 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAFQCHYDSYRYFPCN--IETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCF  670 (840)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhcccccCcc--hHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHH
Confidence            9999999999999999998876544443333  33444477778888889999999998765  5899999998887665


Q ss_pred             -hcCCHHHHHHHHHHHHHCC
Q 006744          565 -KHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       565 -~~g~~~~A~~~~~~m~~~~  583 (632)
                       +.|++..|.++++...++=
T Consensus       671 rrsgnyqka~d~yk~~hrkf  690 (840)
T KOG2003|consen  671 RRSGNYQKAFDLYKDIHRKF  690 (840)
T ss_pred             HhcccHHHHHHHHHHHHHhC
Confidence             6799999999999998764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.63  E-value=2.8e-12  Score=128.39  Aligned_cols=284  Identities=9%  Similarity=0.021  Sum_probs=179.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHH--HHHHHHHhcCChhHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYV--TLIMGLCKGGRVVRGH  258 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~  258 (632)
                      .|++++|.+.+....+..-.| ...|.....+..+.|+++.|.+.|.++.+.  .|+...+.  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            467777776666655432111 222333334446788888888888888765  45543322  3356777788888888


Q ss_pred             HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHH
Q 006744          259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL-------GIYNSIIGGLCRVKQFDKAYKLF  331 (632)
Q Consensus       259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~  331 (632)
                      +.++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+.       .+|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            888888877644 6777788888888888888888888888876554222       12333344444444555666666


Q ss_pred             HHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCC
Q 006744          332 EVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS  411 (632)
Q Consensus       332 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  411 (632)
                      +.+.+. ...+......+...+...|+.++|.+++++..+..  ++....  .+......++.+++.+..+...+..+.+
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~  327 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT  327 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence            655332 23355566677777778888888888887776632  222221  1222234466777777777776666666


Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      ...+..+...+.+.|++++|.+.|+.+.+  ..|+..++..+...+.+.|+.++|.+++++...
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66666777777777777777777777665  356666666666666666666666666665543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.63  E-value=3.1e-10  Score=111.05  Aligned_cols=436  Identities=12%  Similarity=0.060  Sum_probs=343.2

Q ss_pred             hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH----hc-------------------CCHHHHH
Q 006744          132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD----SQ-------------------GRIAEML  188 (632)
Q Consensus       132 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~----~~-------------------g~~~~a~  188 (632)
                      ++.|..++..+..  .++-+...|-+-...--.+|..+...+++++-.    ..                   |.+-...
T Consensus       422 YenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ  499 (913)
T KOG0495|consen  422 YENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ  499 (913)
T ss_pred             HHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence            3445555555433  356777777777777777888888777766433    22                   3334444


Q ss_pred             HHHHHHHhCCCCc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          189 EILEKMRRNLCKP--DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE  266 (632)
Q Consensus       189 ~~~~~m~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  266 (632)
                      .+.......|+.-  -..||+.-...|.+.+.++-|..+|...++.- +-+...|...+..--..|..++-..+|++...
T Consensus       500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~  578 (913)
T KOG0495|consen  500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVE  578 (913)
T ss_pred             HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            5555555544432  23567777788888899999999998887653 45667788777777778999999999999998


Q ss_pred             cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcH
Q 006744          267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV  346 (632)
Q Consensus       267 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  346 (632)
                      .-.+ ....|......+...|++..|..++....+.... +...|-.-+.....+.+++.|..+|.+...  ..|+...|
T Consensus       579 ~~pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~  654 (913)
T KOG0495|consen  579 QCPK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVW  654 (913)
T ss_pred             hCCc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhh
Confidence            7443 5666777778888899999999999999998765 888999999999999999999999998876  45666777


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006744          347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG  426 (632)
Q Consensus       347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  426 (632)
                      .--+..---.+..++|.+++++.++. ++.-..++..+..++-+.++++.|.+.|..-.+..+..+..|-.|...=-+.|
T Consensus       655 mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  655 MKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            66666666789999999999988876 33355677888888999999999999999888887778889999999999999


Q ss_pred             ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744          427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR  506 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  506 (632)
                      .+-.|..++++..-.+ +-|...|...|+.-.+.|+.+.|..++.+.++. ...+...|..-|....+.++-..+...++
T Consensus       734 ~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk  811 (913)
T KOG0495|consen  734 QLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK  811 (913)
T ss_pred             chhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH
Confidence            9999999999998765 667888999999999999999999999999874 34566778888888888887666666665


Q ss_pred             HHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ++      ..|....-.+...+-...++++|.+.|.+.++.+ +.+..+|..+..-+...|.-+.-.++++.......
T Consensus       812 kc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  812 KC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             hc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            53      2344455556677778889999999999999985 66778999999999999999999999998877654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.63  E-value=2.2e-11  Score=123.53  Aligned_cols=362  Identities=15%  Similarity=0.136  Sum_probs=243.4

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE  259 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  259 (632)
                      .+|+.++|.+++.++++... .+...|.+|...|-..|+.+++...+-..-..+ +-|...|..+.....+.|+++.|.-
T Consensus       151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence            56999999999999988754 477889999999999999999988776554443 4567888889998999999999999


Q ss_pred             HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----HHHHHHccCCHHHHHHHHHHHH
Q 006744          260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNS----IIGGLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~m~  335 (632)
                      .|.+.++.... +...+---+..|-+.|+...|.+.|.++.......|..-+..    ++..+...++-+.|.+.++...
T Consensus       229 cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  229 CYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            99999987554 555666667888999999999999999988755333333333    3556677777788888888776


Q ss_pred             hC-CCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCC---------------------------CCccccHHHHHHHH
Q 006744          336 QD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK---------------------------FSVAADLEKFFEFL  387 (632)
Q Consensus       336 ~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~  387 (632)
                      .. +-..+...++.++..+.+...++.+...+..+....                           .+++..+. .++.+
T Consensus       308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~ic  386 (895)
T KOG2076|consen  308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMIC  386 (895)
T ss_pred             hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhh
Confidence            53 233455678888888999999999888887765511                           11111220 11222


Q ss_pred             hhhcccHHHHHHHHHHHHhCC--CC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHH
Q 006744          388 VGKEERIMMALDVFEELKGKG--YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDIL  464 (632)
Q Consensus       388 ~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~  464 (632)
                      +......+....+...+.+.+  +. +...|..+..+|...|++.+|+.+|..+.....--+...|..+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            223333333333333333333  33 566777777888888888888888887776654455667777777777888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-------CCCChHHHHHHHHHHHHHcCCHHHH
Q 006744          465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV-------ASGPTEFKYALTILHVCRSGEAEKI  537 (632)
Q Consensus       465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a  537 (632)
                      +|.+.|++++... +-+...-..|...+.+.|+.++|.+.+..+....       ...|+...--.....+...|+.++=
T Consensus       467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f  545 (895)
T KOG2076|consen  467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF  545 (895)
T ss_pred             HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence            8888888777643 1234455566667777888888877777654211       1123332222334445566666665


Q ss_pred             HHHHHHHHh
Q 006744          538 IEVLNEMTQ  546 (632)
Q Consensus       538 ~~~~~~m~~  546 (632)
                      +.+...|+.
T Consensus       546 i~t~~~Lv~  554 (895)
T KOG2076|consen  546 INTASTLVD  554 (895)
T ss_pred             HHHHHHHHH
Confidence            555555554

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=5.8e-12  Score=126.84  Aligned_cols=286  Identities=12%  Similarity=0.043  Sum_probs=127.1

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH--HhHHHHHHHHHhcCChhHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV--MAYVTLIMGLCKGGRVVRG  257 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a  257 (632)
                      .|+++.|.+.+.+..+..  |+ ...+-....++.+.|+++.|.+.|++..+..  |+.  .........+...|+++.|
T Consensus        97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence            355555555555544432  22 2222333344455556666666655554432  222  1222234455555556666


Q ss_pred             HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH-HHHHH---HHccCCHHHHHHHHHH
Q 006744          258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN-SIIGG---LCRVKQFDKAYKLFEV  333 (632)
Q Consensus       258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~---~~~~g~~~~A~~~~~~  333 (632)
                      .+.++.+.+..+. +..++..+...+...|++++|.+.++.+.+.++. +...+. .-..+   +...+..++..+.+..
T Consensus       173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            6665555555433 4445555555555556666555555555555432 222111 01111   1111112222222222


Q ss_pred             HHhCCC---CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC
Q 006744          334 TVQDDL---APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS  410 (632)
Q Consensus       334 m~~~~~---~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  410 (632)
                      +.+...   ..+...+..+...+...|+.++|.+++++..+                                   ..+.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~-----------------------------------~~pd  295 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK-----------------------------------KLGD  295 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh-----------------------------------hCCC
Confidence            222211   11334444444555555555555555555544                                   3333


Q ss_pred             ChhH--HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 006744          411 SVPI--YNILMGALLEIGEVKKALYLFGKMRGLNLEVNS---LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY  485 (632)
Q Consensus       411 ~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  485 (632)
                      +...  ...........++.+.+.+.++...+.  .|+.   ....++...|.+.|++++|.+.|+........|+...+
T Consensus       296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~  373 (409)
T TIGR00540       296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL  373 (409)
T ss_pred             cccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence            2211  011111112234445555555554442  2222   23334555555566666666666533332234555555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          486 NCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       486 ~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      ..+...+.+.|+.++|.++|++.+
T Consensus       374 ~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       374 AMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Confidence            566666666666666666666543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=4.8e-11  Score=112.08  Aligned_cols=368  Identities=12%  Similarity=0.017  Sum_probs=259.9

Q ss_pred             CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH-
Q 006744          198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY-  276 (632)
Q Consensus       198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-  276 (632)
                      +...|...+-.....+.+.|....|++.|......- +-.-..|..|...+   .+.+.+..    .... ...|.... 
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~----l~~~-l~~~~h~M~  229 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSI----LVVG-LPSDMHWMK  229 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHH----HHhc-CcccchHHH
Confidence            444565555555556678899999999998877541 22334444443332   23322222    2221 22121111 


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHhcHHHHHHHH
Q 006744          277 -GVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL--APDFSTVNPLLVCC  353 (632)
Q Consensus       277 -~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~ll~~~  353 (632)
                       --+..++-.....+++..-.+.....|+.-+...-+....+.....++++|+.+|+++.+.+.  .-|..+|+.++-.-
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~  309 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence             123456666678888888888888888875555555556667788999999999999998742  23677888776543


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHH
Q 006744          354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY  433 (632)
Q Consensus       354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  433 (632)
                      .....+    .++.+-.-.--..-+.+...+.+.|+-.++.++|...|++..+.++....+|+.|..-|....+...|.+
T Consensus       310 ~~~skL----s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  310 NDKSKL----SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             hhhHHH----HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHH
Confidence            222222    2222211111112344556667778888999999999999999998888999999999999999999999


Q ss_pred             HHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006744          434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA  513 (632)
Q Consensus       434 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  513 (632)
                      -++..++.+ +-|...|-.+.++|.-.+...-|+-+|++..+.. +.|...|.+|.++|.+.++.++|++.|+..+.-..
T Consensus       386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD  463 (559)
T ss_pred             HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence            999999864 6688899999999999999999999999998864 35799999999999999999999999999886532


Q ss_pred             CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          514 SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPNEV--ICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       514 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                        .+...|..|...|-+.++.++|...+++-++.    |...+..  ...-|..-+.+.+++++|..+......-
T Consensus       464 --te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  464 --TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             --cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence              34566777999999999999999998876652    4332212  2233555667889999998877666544

>TIGR00540 hemY_coli hemY protein

Probab=99.61  E-value=5.7e-12  Score=126.88  Aligned_cols=300  Identities=10%  Similarity=-0.027  Sum_probs=185.0

Q ss_pred             HhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744          249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY  328 (632)
Q Consensus       249 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  328 (632)
                      ...|+++.|.+.+.+..+.... ....+-.....+...|+.+.|.+.+++..+....+.....-.....+...|+++.|.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            3458888888888776665322 233344445677778888888888888766533322233334467777788888888


Q ss_pred             HHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744          329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG  408 (632)
Q Consensus       329 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  408 (632)
                      ..++.+.+.... +...+..+...+...|+++.+.+.+..+.+.+..............                     
T Consensus       174 ~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a---------------------  231 (409)
T TIGR00540       174 HGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKA---------------------  231 (409)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHH---------------------
Confidence            888888776532 4456667777788888888888888887777543222211111111                     


Q ss_pred             CCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 006744          409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN---LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAY  485 (632)
Q Consensus       409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  485 (632)
                            +..+    ...+..+++.+.+..+.+..   .+.+...+..+...+...|+.++|.+++++..+.........+
T Consensus       232 ------~~~~----l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~  301 (409)
T TIGR00540       232 ------EIGL----LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISL  301 (409)
T ss_pred             ------HHHH----HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchh
Confidence                  1111    11111122222232222221   1125556666666777777777777777777764322111111


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744          486 -NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC  564 (632)
Q Consensus       486 -~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  564 (632)
                       ..........++.+.+.+.++..++..+..|+.....++.+.+.+.|++++|.+.|+........|+..++..+...+.
T Consensus       302 ~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~  381 (409)
T TIGR00540       302 PLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD  381 (409)
T ss_pred             HHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH
Confidence             1111122335677888888888777655555434556788888899999999999995443334688888889999999


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 006744          565 KHGTLEEARKVFTNLRE  581 (632)
Q Consensus       565 ~~g~~~~A~~~~~~m~~  581 (632)
                      +.|+.++|.+++++...
T Consensus       382 ~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       382 QAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999987644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=7.9e-12  Score=125.12  Aligned_cols=291  Identities=11%  Similarity=0.050  Sum_probs=189.9

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH--HHHHHHHHhcCCHHHH
Q 006744          215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY--GVLIEGLVGEGKVGKA  292 (632)
Q Consensus       215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a  292 (632)
                      ..|+++.|.+.+....+..-. ....|.....+..+.|+++.|.+.+.++.+..  |+...+  ......+...|+.+.|
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHH
Confidence            369999999888776554211 12334334455578899999999999988753  343322  2446788889999999


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHH-HHHHhcCChhHHHHHHHHHHH
Q 006744          293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEK  371 (632)
Q Consensus       293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~  371 (632)
                      ...++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++. .+..+- .++.                 
T Consensus       173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~-----------------  233 (398)
T PRK10747        173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQQAWI-----------------  233 (398)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHH-----------------
Confidence            9999999888755 6778888889999999999999999999887654222 221110 1110                 


Q ss_pred             CCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHH
Q 006744          372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS  451 (632)
Q Consensus       372 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~  451 (632)
                                 .++.......+.+...++++.+.+.-..+......+...+...|+.++|..++++..+.  .+|...  
T Consensus       234 -----------~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--  298 (398)
T PRK10747        234 -----------GLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--  298 (398)
T ss_pred             -----------HHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--
Confidence                       00000111122333444444444333336667777777788888888888888777663  344421  


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHc
Q 006744          452 IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS  531 (632)
Q Consensus       452 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  531 (632)
                      .++.+....++.+++.+..+...+.. +-|...+..+...+.+.|++++|.+.|+..++.   .|+...|..+...+.+.
T Consensus       299 ~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~  374 (398)
T PRK10747        299 VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ---RPDAYDYAWLADALDRL  374 (398)
T ss_pred             HHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHc
Confidence            12333345577777877777777643 234566777777888888888888888877643   57777777777778888


Q ss_pred             CCHHHHHHHHHHHHh
Q 006744          532 GEAEKIIEVLNEMTQ  546 (632)
Q Consensus       532 g~~~~a~~~~~~m~~  546 (632)
                      |+.++|.+++++...
T Consensus       375 g~~~~A~~~~~~~l~  389 (398)
T PRK10747        375 HKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHh
Confidence            888888888877654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=2.6e-11  Score=114.55  Aligned_cols=388  Identities=11%  Similarity=0.042  Sum_probs=247.1

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHH
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD-VMAYVTLIMGLCKGGRVVRG  257 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a  257 (632)
                      ..|.+++|+..+...++.  .|| ..-|.....+|...|+|+++.+--.+..+.  .|+ +..+..-..++-..|++++|
T Consensus       127 ~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~lg~~~ea  202 (606)
T KOG0547|consen  127 RNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQLGKFDEA  202 (606)
T ss_pred             hcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHhhccHHHH
Confidence            456788888888887774  466 666777777778888888877776666654  343 33444555566666666666


Q ss_pred             HHHHHHHH-HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHhhHHHHHHHHHc-------------
Q 006744          258 HELFREMK-ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-SG--YRADLGIYNSIIGGLCR-------------  320 (632)
Q Consensus       258 ~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g--~~~~~~~~~~li~~~~~-------------  320 (632)
                      +.=+.-.. -.|+. |..+--.+=+.+-     ..|....++-.. .+  +-|+.....+....+..             
T Consensus       203 l~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks  276 (606)
T KOG0547|consen  203 LFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS  276 (606)
T ss_pred             HHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence            53222111 11111 1111111111111     111111111111 11  12333222222221110             


Q ss_pred             ------------c---CCHHHHHHHHHHHHhC-CCCC--C---H------hcHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006744          321 ------------V---KQFDKAYKLFEVTVQD-DLAP--D---F------STVNPLLVCCAEMGRMDNFFKLLAQMEKLK  373 (632)
Q Consensus       321 ------------~---g~~~~A~~~~~~m~~~-~~~p--~---~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  373 (632)
                                  .   ..+.+|...+.+-... ...+  +   .      .+.......+.-.|+.-.+..-|+..++..
T Consensus       277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~  356 (606)
T KOG0547|consen  277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD  356 (606)
T ss_pred             hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence                        0   1233333333221110 0111  1   1      111111122344678888999999988876


Q ss_pred             CCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH
Q 006744          374 FSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA  453 (632)
Q Consensus       374 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l  453 (632)
                      ..+ ...|-.+..+|....+-++.+..|.+....++.+..+|..-.+.+.-.+++++|..=|++.+... +-+...|..+
T Consensus       357 ~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl  434 (606)
T KOG0547|consen  357 PAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL  434 (606)
T ss_pred             ccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence            543 33477777889999999999999999999998899999999999999999999999999998753 3345566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC------CChHHHHHHHHHH
Q 006744          454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS------GPTEFKYALTILH  527 (632)
Q Consensus       454 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~p~~~~~~~l~~~  527 (632)
                      --+..+.+.++++...|++.++. ++-.+..|+.....+...++++.|.+.|+.+++....      .+....--.++..
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~  513 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL  513 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh
Confidence            66777889999999999999885 3445889999999999999999999999998865332      2222222222222


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      - -.+++..|++++++..+.. +-....|..|...-.+.|+.++|+++|++-...
T Consensus       514 q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  514 Q-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             c-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            2 3389999999999999885 556678999999999999999999999987654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.57  E-value=1.8e-14  Score=137.80  Aligned_cols=259  Identities=17%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcC-CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744          245 IMGLCKGGRVVRGHELFREMKENG-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ  323 (632)
Q Consensus       245 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  323 (632)
                      ...+.+.|++++|++++.+..... ..-|...|..+...+...++.+.|.+.++++...+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            334444444444444443322221 1112333333334444444455555555444443322 33333334433 34455


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCccccHHHHHHHHhhhcccHHHHHHHHH
Q 006744          324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-FSVAADLEKFFEFLVGKEERIMMALDVFE  402 (632)
Q Consensus       324 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  402 (632)
                      +++|.+++++..+..  ++...+..++..+...++++++.++++.+.... .+.+..++.....++.+.|+.++|++.++
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555544433322  223333444444445555555555554443321 12233334444444455555555555555


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 006744          403 ELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV  482 (632)
Q Consensus       403 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~  482 (632)
                      +..+..+.+....+.++..+...|+.+++.++++...+.. +.|...+..+..++...|+.++|..+|++..+.. +.|.
T Consensus       171 ~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~  248 (280)
T PF13429_consen  171 KALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP  248 (280)
T ss_dssp             HHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence            5555555555566666666666666666666665555432 3344445555666666666666666666665533 2355


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      .....+.+++...|+.++|.++.+++.
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            555666666666666666666665543

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.56  E-value=2.3e-12  Score=126.61  Aligned_cols=285  Identities=13%  Similarity=0.074  Sum_probs=164.8

Q ss_pred             CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL--VEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      +..+|...|..+.+. +.-...+...+..+|...+++++|.++|+.+.+..  ..-+..+|.+.+.-+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            556677777775443 22233555666677777777777777777776542  11245666666543322    112222


Q ss_pred             H-HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744          261 F-REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL  339 (632)
Q Consensus       261 ~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  339 (632)
                      + +.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++.++.... ...+|+.+..-+....++|.|...|+..+....
T Consensus       409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            2 2222322 225667777777777777777777777777765332 566777777777777777777777776653221


Q ss_pred             CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744          340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM  419 (632)
Q Consensus       340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  419 (632)
                      . +...|..+...|.+.++++.|+-.|+++.+.++. +..+...+..++-+.|+.++|+.++++....++.++..--..+
T Consensus       487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            1 2223334455666667777776666666655433 3344444555556666666666666666666555555544555


Q ss_pred             HHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       420 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      ..+...+++++|+..++++++. ++-+...|..+...|.+.|+.+.|+.-|..+.+..
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            5555666666666666666653 22233345555556666666666666666555543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.56  E-value=2.2e-11  Score=109.09  Aligned_cols=227  Identities=18%  Similarity=0.142  Sum_probs=119.2

Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc---HHhHHHHHHHHHhcCCHHHH
Q 006744          216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID---RAIYGVLIEGLVGEGKVGKA  292 (632)
Q Consensus       216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a  292 (632)
                      .++.++|.++|-+|.+.. +-+..+--+|.+.|-+.|.++.|+.+++.+.++---+.   ......|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            456677777777776542 23344555666667777777777777776665411101   11333455566666677777


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHH-HHHHhcCChhHHHHHHHHHHH
Q 006744          293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL-VCCAEMGRMDNFFKLLAQMEK  371 (632)
Q Consensus       293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~  371 (632)
                      +.+|..+.+.+.. -......|+..|-+..+|++|+++-+++.+.+..+    |+.-| ..||.                
T Consensus       127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~----~~~eIAqfyCE----------------  185 (389)
T COG2956         127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT----YRVEIAQFYCE----------------  185 (389)
T ss_pred             HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc----chhHHHHHHHH----------------
Confidence            7777666654322 34455566666666666776666666666554332    22111 11111                


Q ss_pred             CCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHH
Q 006744          372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFS  451 (632)
Q Consensus       372 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~  451 (632)
                                  +...+....+++.|..++.+..+.++.++.+--.+.+.+...|+++.|.+.++...+.+..--..+..
T Consensus       186 ------------LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~  253 (389)
T COG2956         186 ------------LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE  253 (389)
T ss_pred             ------------HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence                        11112222344444555555444444444444445555555555555555555555544333333444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744          452 IAIQCHVESGDILEACECHNKIIEM  476 (632)
Q Consensus       452 ~ll~~~~~~g~~~~a~~~~~~~~~~  476 (632)
                      .+..+|.+.|+.++....+..+.+.
T Consensus       254 ~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         254 MLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            5555555555555555555555543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.55  E-value=3.5e-14  Score=135.82  Aligned_cols=259  Identities=16%  Similarity=0.147  Sum_probs=72.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          210 IRVLAAERNLDACLRVWEEMKKDLV-EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       210 i~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      ...+.+.|++++|++++++...... ..|...|..+...+...++++.|.+.++++.+.+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            4444555555555555543322211 122333333334444445555555555555544333 33444444444 45555


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHhcHHHHHHHHHhcCChhHHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LAPDFSTVNPLLVCCAEMGRMDNFFKLLA  367 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  367 (632)
                      .++|.++++...+..  ++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|...++
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555554443332  233344445555555555555555555544321 22333444444555555555555555555


Q ss_pred             HHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH
Q 006744          368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS  447 (632)
Q Consensus       368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~  447 (632)
                      +..+..+. +..+...++.++...|+.+++.++++...+....+...|..+..+|...|+.++|+.+|++..... +.|.
T Consensus       171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~  248 (280)
T PF13429_consen  171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP  248 (280)
T ss_dssp             HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred             HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence            55554432 334444455555555555555555555554443355556666666666677777777666666532 3355


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          448 LSFSIAIQCHVESGDILEACECHNKII  474 (632)
Q Consensus       448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~  474 (632)
                      .....+..++...|+.++|.++..++.
T Consensus       249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  249 LWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHT----------------
T ss_pred             ccccccccccccccccccccccccccc
Confidence            556666666666677777666666554

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.54  E-value=6.1e-11  Score=106.34  Aligned_cols=285  Identities=14%  Similarity=0.155  Sum_probs=188.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH------HhHHHHHHHHHhcCCh
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADV------MAYVTLIMGLCKGGRV  254 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~  254 (632)
                      ....++|.++|-+|.+... -+..+--+|.+.|.+.|..+.|+++.+.+.++   ||.      ...-.|..-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            3578999999999998532 24556678889999999999999999998875   442      3445677788899999


Q ss_pred             hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCHHHHHHH
Q 006744          255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL----GIYNSIIGGLCRVKQFDKAYKL  330 (632)
Q Consensus       255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~  330 (632)
                      +.|+++|..+.+.+-. -......|+..|-...+|++|+++-+++.+.+..+..    ..|..|...+....+.+.|..+
T Consensus       124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            9999999999886533 4567888999999999999999999999987655432    2455566666677788888888


Q ss_pred             HHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC
Q 006744          331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS  410 (632)
Q Consensus       331 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  410 (632)
                      +.+..+.+.+ ....-..+.+.....|++++|.+.++.+.+.+...                                  
T Consensus       203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----------------------------------  247 (389)
T COG2956         203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEY----------------------------------  247 (389)
T ss_pred             HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH----------------------------------
Confidence            8887765432 11122233355556666666666666655554433                                  


Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      -..+...|..+|.+.|+.++....+.++.+..  ++...-..+........-.+.|..++.+-+..  +|+...+..+|+
T Consensus       248 l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~  323 (389)
T COG2956         248 LSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMD  323 (389)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHH
Confidence            33445666667777777777777776666543  22223333333333333444454444443332  477777777776


Q ss_pred             HHHh---cCCHHHHHHHHHHHh
Q 006744          491 GLCK---IGEIDAAMMLVRDCL  509 (632)
Q Consensus       491 ~~~~---~g~~~~A~~~~~~~~  509 (632)
                      .-..   .|...+.+.+++.|+
T Consensus       324 ~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         324 YHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             hhhccccccchhhhHHHHHHHH
Confidence            5432   233444455555544

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=7.8e-12  Score=122.87  Aligned_cols=285  Identities=13%  Similarity=0.061  Sum_probs=199.7

Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--CCCCHhcHHHHHHHHHhcCChhHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD--LAPDFSTVNPLLVCCAEMGRMDNFFKLL  366 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~  366 (632)
                      ..+|...|+.+.+.... +..+...+..+|...+++++|+++|+.+.+..  ..-+..+|.+.+-.+-+    +-++.++
T Consensus       335 ~~~A~~~~~klp~h~~n-t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L  409 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYN-TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL  409 (638)
T ss_pred             HHHHHHHHHhhHHhcCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence            46777777775444222 33555566777777888888888887776542  12245566666544322    1223333


Q ss_pred             HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC
Q 006744          367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN  446 (632)
Q Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  446 (632)
                      .+-.-.--+..+..+..+..+|.-+++.+.|++.|++..+.++....+|+.+..-+.....+|.|...|+....    .|
T Consensus       410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~  485 (638)
T KOG1126|consen  410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD  485 (638)
T ss_pred             HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence            22221222335667777777788888888888888888877777778888888888888888888888887764    33


Q ss_pred             HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHH
Q 006744          447 SLS---FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL  523 (632)
Q Consensus       447 ~~t---~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~  523 (632)
                      ...   |.-+.-.|.+.++++.|+-.|+++.+-+. -+.+....+...+.+.|+.|+|+++++++.......|-...  .
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~--~  562 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY--H  562 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH--H
Confidence            344   44455578888899999988888887552 24666677778888889999999999988755433332222  2


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744          524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT  586 (632)
Q Consensus       524 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  586 (632)
                      .+..+...+++++|+..++++++. ++.+...|..++..|.+.|+.+.|+.-|.-+.+.+..+
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            556667778999999999999887 56677788889999999999999999999888887765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.51  E-value=2.5e-10  Score=105.79  Aligned_cols=286  Identities=12%  Similarity=0.043  Sum_probs=203.3

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      .|++.+|+.+..+-.+.+-. ....|..-..+.-+.|+.+.+-+.+.+..+.--.++...+-+........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            47888888888887776544 34456666677778888899988888887763345666677777788888888888888


Q ss_pred             HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHH
Q 006744          261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL-------GIYNSIIGGLCRVKQFDKAYKLFEV  333 (632)
Q Consensus       261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~  333 (632)
                      ++++.+.+.. +..+.....++|.+.|++..+..++..|.+.|.--+.       .+|+.+++-....+..+.-...|+.
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            8888887665 6777888888899999999999999888888765443       4677777777766666666666665


Q ss_pred             HHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh
Q 006744          334 TVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP  413 (632)
Q Consensus       334 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  413 (632)
                      .... .+-+...-.+++.-+.+.|+.++|.++..+..+.+.++.  ++..  .-+.+.++.+.-++..+...+..+.++.
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence            5432 233444556667777788888888888888887776554  1111  1234556666666666666666555667


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      .+.+|...|.+++.+.+|...|+...+  ..|+..+|+.+.+++.+.|+.++|.+++++...
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            777777777777777777777776655  457777777777777777777777777766654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.51  E-value=3.7e-10  Score=104.63  Aligned_cols=160  Identities=13%  Similarity=0.030  Sum_probs=107.3

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC  493 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  493 (632)
                      +|+.+++-....+..+.-...|++.... .+-+...-.+++.-+.+.|+.++|.++..+..+.+..++..    ..-.+.
T Consensus       231 a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l  305 (400)
T COG3071         231 AWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRL  305 (400)
T ss_pred             HHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhc
Confidence            4566666555555555555566555443 34445555666667777778888887777777766655511    122344


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006744          494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR  573 (632)
Q Consensus       494 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~  573 (632)
                      +-++.+.-++..++-....+..|  ..+.+|..-|.+.+.+.+|.+.|+...+.  .|+..+|+.+.+++.+.|+..+|.
T Consensus       306 ~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         306 RPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             CCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHH
Confidence            56666766777766666656556  44555777788888888888888877765  578888888888888888888888


Q ss_pred             HHHHHHHHC
Q 006744          574 KVFTNLRER  582 (632)
Q Consensus       574 ~~~~~m~~~  582 (632)
                      ++.++....
T Consensus       382 ~~r~e~L~~  390 (400)
T COG3071         382 QVRREALLL  390 (400)
T ss_pred             HHHHHHHHH
Confidence            887776633

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=1.3e-09  Score=102.72  Aligned_cols=314  Identities=11%  Similarity=0.045  Sum_probs=223.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHcc
Q 006744          244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR--ADLGIYNSIIGGLCRV  321 (632)
Q Consensus       244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~  321 (632)
                      +..++-.....+++.+-.+.....|+.-+...-+....+.....|+++|+.+|+++.+..+-  -|..+|..++-.--..
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~  312 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh
Confidence            34555666678888888888888887766655555666667788899999999998887431  1566777665432221


Q ss_pred             CCHH-HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHH
Q 006744          322 KQFD-KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV  400 (632)
Q Consensus       322 g~~~-~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  400 (632)
                      .... -|..+++   -....  ..|..++.+-|.-.++.++|..+|++..+.+.. ....++.+..-|....+...|.+-
T Consensus       313 skLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s  386 (559)
T KOG1155|consen  313 SKLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES  386 (559)
T ss_pred             HHHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence            1111 1222221   11222  347777778888888899999999998887654 455677777778888999999999


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006744          401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP  480 (632)
Q Consensus       401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p  480 (632)
                      ++...+-++.|-..|-.|.++|.-.+...-|+-.|++..+-. +-|...+.+|.++|.+.++.++|.+.|......|- .
T Consensus       387 YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-t  464 (559)
T KOG1155|consen  387 YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-T  464 (559)
T ss_pred             HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-c
Confidence            999999988899999999999999999999999999998753 45778899999999999999999999999998763 3


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---C-CCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006744          481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---A-SGPTEF-KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI  555 (632)
Q Consensus       481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~  555 (632)
                      +...+..|.+.|-+.++.++|...|++.++..   + ..+... .---|...+.+.+++++|..+......         
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~---------  535 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK---------  535 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc---------
Confidence            66788999999999999999999998877531   1 222111 111134444566666666554433222         


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          556 CSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       556 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                               -.-..++|..+++++.+..
T Consensus       536 ---------~~~e~eeak~LlReir~~~  554 (559)
T KOG1155|consen  536 ---------GETECEEAKALLREIRKIQ  554 (559)
T ss_pred             ---------CCchHHHHHHHHHHHHHhc
Confidence                     1334567777777776543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=4.6e-09  Score=99.19  Aligned_cols=424  Identities=11%  Similarity=0.072  Sum_probs=233.8

Q ss_pred             CCHHHHHHHHHHHHhCCChhHHhHHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHH
Q 006744          150 HNFASYNALAYCLSRNNLFRAADQVPELMDS------------------QGRIAEMLEILEKMRRNLCKPDVFAYTAMIR  211 (632)
Q Consensus       150 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~  211 (632)
                      .+...|-.....=-..+++..|+.+|++...                  ...+..|..++++....-+..| ..|-..+.
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd-qlWyKY~y  149 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD-QLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-HHHHHHHH
Confidence            3445555555555556666667777665542                  2355666666666665422222 23444444


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744          212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  291 (632)
                      +=-..|++..|.++|+.-.+.  .|+...|++.|+.=.+.+.++.|..+++..+-.  .|++.+|--....=.++|.+..
T Consensus       150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence            444567777777777766554  577777777777777777777777777766553  3666666666666666777777


Q ss_pred             HHHHHHHHHHC-CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhcHHHHHHHHHhcCChhHHHHHH--
Q 006744          292 ACDLLKDLVDS-GY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP-DFSTVNPLLVCCAEMGRMDNFFKLL--  366 (632)
Q Consensus       292 a~~~~~~m~~~-g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~--  366 (632)
                      |..+|+...+. |- .-+...+.++..--.++..++.|.-+|+-.++.-..- ....|..+...--+.|+.....+..  
T Consensus       226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            77777666543 10 0122233333333345556666666666655431111 1233444444434455554444332  


Q ss_pred             ------HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC--ChhHHHHHHH--------HHHhcCChhh
Q 006744          367 ------AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS--SVPIYNILMG--------ALLEIGEVKK  430 (632)
Q Consensus       367 ------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~--------~~~~~g~~~~  430 (632)
                            +.+++.+. .+-+..-..+.+-...|+.+...++|++....-++  .-..|...|-        .=....+.+.
T Consensus       306 KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er  384 (677)
T KOG1915|consen  306 KRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER  384 (677)
T ss_pred             hhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence                  12222221 12222223334444556777777777776665544  1122222211        1123456666


Q ss_pred             HHHHHHHHhhCCCCcCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744          431 ALYLFGKMRGLNLEVNSLSFSIAIQ----CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR  506 (632)
Q Consensus       431 A~~~~~~m~~~~~~p~~~t~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  506 (632)
                      +.++|+...+. ++-...||..+=-    --.+..++..|.+++...+  |.-|...+|...|..-.+.+++|...++++
T Consensus       385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            77777666652 3334445444322    2335566777777776665  345666677777777777777777777777


Q ss_pred             HHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      +.++-.  .-+..+|......-...|+.+.|..+|+-+++.. ...-...|...|+--...|.++.|+.+++.++++..
T Consensus       462 kfle~~--Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  462 KFLEFS--PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             HHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence            766532  2234555555554556677777777777776552 112233455555555667777777777777776653

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.48  E-value=3.5e-08  Score=96.85  Aligned_cols=471  Identities=11%  Similarity=0.069  Sum_probs=279.6

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCC------------HHHHH
Q 006744          121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR------------IAEML  188 (632)
Q Consensus       121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~------------~~~a~  188 (632)
                      ++...+...+-|+.++.+++...+     .++..-+-.|..+++.+++++|.+.+..+..+..            +.+-.
T Consensus       143 lyl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elc  217 (835)
T KOG2047|consen  143 LYLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELC  217 (835)
T ss_pred             HHHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHH
Confidence            444455566667777777776543     3444577788889999999998888777664321            11111


Q ss_pred             ----------------HHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744          189 ----------------EILEKMRRNLCKPD--VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK  250 (632)
Q Consensus       189 ----------------~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  250 (632)
                                      .+++.+...  -+|  -..|++|...|.+.|.+++|.++|++....  ..++..|..+.++|+.
T Consensus       218 dlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~  293 (835)
T KOG2047|consen  218 DLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ  293 (835)
T ss_pred             HHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence                            111111111  122  245999999999999999999999987764  3345555555555543


Q ss_pred             cC----------------------ChhHHHHHHHHHHHcCC-----------cccHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744          251 GG----------------------RVVRGHELFREMKENGI-----------LIDRAIYGVLIEGLVGEGKVGKACDLLK  297 (632)
Q Consensus       251 ~g----------------------~~~~a~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~  297 (632)
                      -.                      +++-.+.-|+.+...+.           .-++..|..-+.  +..|+..+-...|.
T Consensus       294 FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyt  371 (835)
T KOG2047|consen  294 FEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYT  371 (835)
T ss_pred             HHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHH
Confidence            21                      12223334444433221           012222322222  23466777777787


Q ss_pred             HHHHCCCCC------CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          298 DLVDSGYRA------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       298 ~m~~~g~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      +.+.. +.|      -...|..+.+.|-.+|+++.|..+|++..+...+--   ..+|..-...-.+..+++.|+++++.
T Consensus       372 eAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~  450 (835)
T KOG2047|consen  372 EAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR  450 (835)
T ss_pred             HHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence            77754 222      234678888999999999999999998876543311   12333333334455677788887776


Q ss_pred             HHHCCC-----------Cc------cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhH
Q 006744          369 MEKLKF-----------SV------AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA  431 (632)
Q Consensus       369 ~~~~~~-----------~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  431 (632)
                      ....--           ++      +..++..++..--..|-++....+|+++.+..+.++.+.-.....+-.+.-++++
T Consensus       451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfees  530 (835)
T KOG2047|consen  451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEES  530 (835)
T ss_pred             hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHH
Confidence            532211           11      1123344444455678888889999999888777666655555666677788999


Q ss_pred             HHHHHHHhhCCCCcCHH-HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHhHHHHH--HHHHhcCCHHHHHHHH
Q 006744          432 LYLFGKMRGLNLEVNSL-SFSIAIQCHVE---SGDILEACECHNKIIEMSQVPSVAAYNCLT--KGLCKIGEIDAAMMLV  505 (632)
Q Consensus       432 ~~~~~~m~~~~~~p~~~-t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~~~~A~~~~  505 (632)
                      .++|++-+..--.|+.. .|+..+.-+.+   ...++.|..+|++.++ |..|...-+-.|+  ..--+.|-...|+.++
T Consensus       531 Fk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiy  609 (835)
T KOG2047|consen  531 FKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIY  609 (835)
T ss_pred             HHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99998877665456654 45555554433   3468999999999998 6555432222222  2223568888899999


Q ss_pred             HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA---IISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      +++.......--...||+.|.-....=.+.....++++.++.  -||...-..   ..+.=++.|..+.|+.++..-.+.
T Consensus       610 erat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  610 ERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence            987654333333456777776655444444556667776665  455554333   333445778888888888766554


Q ss_pred             CCCCCCChhhHHHHHHHHhhhchhH
Q 006744          583 KLLTEANTIVYDEILIEHMKKKTAD  607 (632)
Q Consensus       583 ~~~~~~~~~~~~~l~~~~~~~~~~~  607 (632)
                      - .|..+...+..--.--.+.|+-+
T Consensus       688 ~-dPr~~~~fW~twk~FEvrHGned  711 (835)
T KOG2047|consen  688 C-DPRVTTEFWDTWKEFEVRHGNED  711 (835)
T ss_pred             C-CCcCChHHHHHHHHHHHhcCCHH
Confidence            2 34444443333333333333333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=5.5e-10  Score=105.76  Aligned_cols=224  Identities=14%  Similarity=0.074  Sum_probs=164.8

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHH
Q 006744          318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA  397 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  397 (632)
                      +.-.|+...|..-|+...+....++. .|..+...|...++.++..+.|....+.+.. ++.+|.--..++.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence            34467788888888888776544333 2666777788888888888888888877654 566666666777777888899


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      ..-|++....++.+...|-.+..+.-+.+++++++..|++..+. ++--...|+.....+...++++.|.+.|+..++..
T Consensus       414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            99998888888778888888888888888999999999888775 45566788888888888999999999998888643


Q ss_pred             CC-----CC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          478 QV-----PS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       478 ~~-----p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      ..     .+  +.+.-.++. +--.+++..|..++.+.++-.  ......|..|...-.+.|+.++|+++|++....
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             cccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            22     11  111122222 223488889999998877532  234566888888888889999999999886644

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.46  E-value=4.9e-11  Score=120.49  Aligned_cols=91  Identities=11%  Similarity=0.103  Sum_probs=80.7

Q ss_pred             HHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006744          189 EILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENG  268 (632)
Q Consensus       189 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  268 (632)
                      .++..+...|+.|+.+||..+|.-||..|+++.|- +|.-|.-.....+...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            34667778899999999999999999999999998 9999988877788899999999999999988877          


Q ss_pred             CcccHHhHHHHHHHHHhcCCHHH
Q 006744          269 ILIDRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       269 ~~p~~~~~~~li~~~~~~g~~~~  291 (632)
                       .|...+|..|..+|...||+..
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHH
Confidence             5788899999999999999765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=4.5e-09  Score=101.70  Aligned_cols=287  Identities=14%  Similarity=0.059  Sum_probs=216.3

Q ss_pred             CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHH
Q 006744          307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF  386 (632)
Q Consensus       307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  386 (632)
                      +........+-+...+++.+..++.+...+.. .+....+..-|.++...|+..+-..+=.++.+.-+..... +-.+..
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~s-W~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALS-WFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcc-hhhHHH
Confidence            44455555667778899999999999988753 3455566666778888998888777777887766543333 333444


Q ss_pred             HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 006744          387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA  466 (632)
Q Consensus       387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a  466 (632)
                      .|...|+..+|.+.|.+...-+..-...|-.....|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus       321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence            4555599999999999988877666678999999999999999999988877653 111222233344468889999999


Q ss_pred             HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----C-hHHHHHHHHHHHHHcCCHHHHHHHH
Q 006744          467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----P-TEFKYALTILHVCRSGEAEKIIEVL  541 (632)
Q Consensus       467 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----p-~~~~~~~l~~~~~~~g~~~~a~~~~  541 (632)
                      .++|.+..... +-|+..++-+.-.....+.+.+|..+|+..+......    + -..+++.|..+|.+.+.+++|+..+
T Consensus       400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            99999988643 3467888888888888899999999999877322111    1 3445778899999999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744          542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK  602 (632)
Q Consensus       542 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~  602 (632)
                      ++.... .+.|..++.++.-.|...|+++.|.+.|.+..-.....    .+-..++..++.
T Consensus       479 q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n----~~~~~lL~~aie  534 (611)
T KOG1173|consen  479 QKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN----IFISELLKLAIE  534 (611)
T ss_pred             HHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc----HHHHHHHHHHHH
Confidence            999988 47899999999999999999999999999988765432    333445554443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.41  E-value=6.3e-08  Score=95.15  Aligned_cols=389  Identities=12%  Similarity=0.112  Sum_probs=241.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCcCHHhHHHHHHHHHhcCCh
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL------VEADVMAYVTLIMGLCKGGRV  254 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~  254 (632)
                      .|-.+-+..++++..+.    +...-+-.|..+++.+++++|.+.+.......      .+-+...|+-+-+..+++-+.
T Consensus       151 ~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~  226 (835)
T KOG2047|consen  151 HGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDK  226 (835)
T ss_pred             CCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcch
Confidence            34555666666666653    34446777888888999999988888775431      134455677666666665443


Q ss_pred             hH---HHHHHHHHHHcCCccc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-------
Q 006744          255 VR---GHELFREMKENGILID--RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK-------  322 (632)
Q Consensus       255 ~~---a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-------  322 (632)
                      -.   ...+++.+...  -+|  ...|++|.+.|.+.|++++|.++|++....-  .++.-|+.+.++|+.-.       
T Consensus       227 ~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~  302 (835)
T KOG2047|consen  227 VQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAK  302 (835)
T ss_pred             hcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHH
Confidence            32   22333333322  233  3478899999999999999999998887652  23334444444444311       


Q ss_pred             ---------------CHHHHHHHHHHHHhCCC-----------CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCC-C-
Q 006744          323 ---------------QFDKAYKLFEVTVQDDL-----------APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-F-  374 (632)
Q Consensus       323 ---------------~~~~A~~~~~~m~~~~~-----------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~-  374 (632)
                                     +++-...-|+.+.....           .-+..+|..-+  -+..|+..+....+.++.+.- + 
T Consensus       303 me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~  380 (835)
T KOG2047|consen  303 MELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPK  380 (835)
T ss_pred             HhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcc
Confidence                           12223333444433221           01122222222  123455666666776665531 1 


Q ss_pred             ---CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc--
Q 006744          375 ---SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSS----VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV--  445 (632)
Q Consensus       375 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--  445 (632)
                         .....++..+...|-..|+++.|..+|++..+...+.    ..+|..-...=.++.+++.|+++++.....--.|  
T Consensus       381 ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~  460 (835)
T KOG2047|consen  381 KAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPEL  460 (835)
T ss_pred             cCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhh
Confidence               1233456777888999999999999999998877663    3567777777788899999999988876432111  


Q ss_pred             ---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744          446 ---------------NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       446 ---------------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  510 (632)
                                     +...|+..++.--..|-++....+|+++++..+. ++.+.......+-.+.-++++.++|++-+.
T Consensus       461 ~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~  539 (835)
T KOG2047|consen  461 EYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGIS  539 (835)
T ss_pred             hhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCc
Confidence                           1224555555566678899999999999987664 322222223334556678999999988555


Q ss_pred             cCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 006744          511 NVASGPTEFKYALTILHVCRS---GEAEKIIEVLNEMTQEGCPPNEVICSAIISGM--CKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       511 ~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~  581 (632)
                      ......-...|+..+.-+.+.   ...+.|..+|++.++ |++|...-+-.|+.+-  -+.|....|+.++++.-.
T Consensus       540 LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~  614 (835)
T KOG2047|consen  540 LFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS  614 (835)
T ss_pred             cCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            433322334577666666533   378999999999999 6777655443443332  245888889998888643

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.40  E-value=3.5e-09  Score=107.42  Aligned_cols=452  Identities=12%  Similarity=0.053  Sum_probs=242.0

Q ss_pred             hhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHh---------CCCCcCHHhHHHHHHHH
Q 006744          143 GKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRR---------NLCKPDVFAYTAMIRVL  213 (632)
Q Consensus       143 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~---------~~~~~~~~~~~~li~~~  213 (632)
                      .+..|+.|+.++|..+|.-|+..|+.+.|- +|..|.-... ---..+|.....         +--.|...+|+.|..+|
T Consensus        16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksL-pv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ay   93 (1088)
T KOG4318|consen   16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSL-PVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAY   93 (1088)
T ss_pred             HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccc-cccchhHHHHHhcccccccccCCCCCchhHHHHHHHHH
Confidence            355789999999999999999999999998 7776653210 000111111111         01147788999999999


Q ss_pred             HhcCChhHHHHHHHH-HHh-------CC-----------------CCcCHHh----------HHHHHHHHHhc------C
Q 006744          214 AAERNLDACLRVWEE-MKK-------DL-----------------VEADVMA----------YVTLIMGLCKG------G  252 (632)
Q Consensus       214 ~~~g~~~~A~~~~~~-m~~-------~~-----------------~~p~~~~----------~~~li~~~~~~------g  252 (632)
                      .+.||+.. ++..++ |..       .|                 .-||..+          |..++..+...      +
T Consensus        94 r~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~  172 (1088)
T KOG4318|consen   94 RIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNA  172 (1088)
T ss_pred             HhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccc
Confidence            99999765 222222 211       11                 1122221          12222222111      1


Q ss_pred             Ch-----------hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744          253 RV-----------VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV  321 (632)
Q Consensus       253 ~~-----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  321 (632)
                      .+           .-..++....+...-.++..+|..++++-...|+++.|..++.+|.+.|+..+...|-.|+-+   .
T Consensus       173 p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~  249 (1088)
T KOG4318|consen  173 PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---I  249 (1088)
T ss_pred             hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---C
Confidence            00           111112211111111478888888888888899999999999999999888777766666655   7


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc----cc----
Q 006744          322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE----ER----  393 (632)
Q Consensus       322 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~----  393 (632)
                      ++...++.++.-|.+.|+.|+..|+...+..+.+.|....+.        .|.+.+......+....++.    .+    
T Consensus       250 ~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~sq~~hg~tAavrsaa~rg~~a~k~l~~n  321 (1088)
T KOG4318|consen  250 NAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EGSQLAHGFTAAVRSAACRGLLANKRLRQN  321 (1088)
T ss_pred             ccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cccchhhhhhHHHHHHHhcccHhHHHHHHH
Confidence            778888888888888899999999888777777655422211        11111111111111111111    01    


Q ss_pred             -HHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCc-CHHHHHHHHHHHHHc--------
Q 006744          394 -IMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLN--LEV-NSLSFSIAIQCHVES--------  460 (632)
Q Consensus       394 -~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p-~~~t~~~ll~~~~~~--------  460 (632)
                       .......+.+..-.+.. ...+|...+. ...+|+-++..++-..|..--  ..+ +...|..++.-|.+.        
T Consensus       322 l~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~  400 (1088)
T KOG4318|consen  322 LRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSR  400 (1088)
T ss_pred             HHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHH
Confidence             11111111111112222 2223332222 233566666665555553211  111 122233322222221        


Q ss_pred             --------------CCHHHHHHHHHHHHH----------------CCCC-------CCHHhHHHHHHHHHhcCCHHHHHH
Q 006744          461 --------------GDILEACECHNKIIE----------------MSQV-------PSVAAYNCLTKGLCKIGEIDAAMM  503 (632)
Q Consensus       461 --------------g~~~~a~~~~~~~~~----------------~~~~-------p~~~~~~~li~~~~~~g~~~~A~~  503 (632)
                                    .+..+..++......                ..+.       +-...-+.++..|+..-+..+++.
T Consensus       401 i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~  480 (1088)
T KOG4318|consen  401 IYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILC  480 (1088)
T ss_pred             HHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          111111111111100                0000       111223445555655555555553


Q ss_pred             HHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      .-++.-..    --...|..||.-++...+.+.|..+.++.....  +..|..-+..+.+.+.+.+....+.+++.++.+
T Consensus       481 ~~ekye~~----lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks  556 (1088)
T KOG4318|consen  481 DEEKYEDL----LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS  556 (1088)
T ss_pred             HHHHHHHH----HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence            33222111    111457788888889999999999888876542  345566688888999999999999999999988


Q ss_pred             CCCCCCCChhhHHHHHHHHhhhchhHHHHhhh
Q 006744          582 RKLLTEANTIVYDEILIEHMKKKTADLVLSGL  613 (632)
Q Consensus       582 ~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l  613 (632)
                      .-...+....++-.++++....++.+.+.+.-
T Consensus       557 ~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~  588 (1088)
T KOG4318|consen  557 SAENEPLVAIILFPLLNSGAPAGQQEKLKKLA  588 (1088)
T ss_pred             HhhCCchHHHHHHHHHhhhhhccCHHHHHHHH
Confidence            54433333455666677666666655554433

>PRK12370 invasion protein regulator; Provisional

Probab=99.37  E-value=6.9e-10  Score=116.25  Aligned_cols=231  Identities=11%  Similarity=0.026  Sum_probs=122.4

Q ss_pred             CHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh---------cCChhHHHHHHHHHHHc
Q 006744          202 DVFAYTAMIRVLAA-----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK---------GGRVVRGHELFREMKEN  267 (632)
Q Consensus       202 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~  267 (632)
                      +...|...+.+...     .+++++|.++|++..+.. +-+...|..+..++..         .+++++|...+++..+.
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            34445455544321     133567777777777653 2234445444444331         23466777777777766


Q ss_pred             CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHH
Q 006744          268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVN  347 (632)
Q Consensus       268 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  347 (632)
                      +.. +...+..+...+...|++++|...|++..+.++. +...|..+...+...|++++|+..+++..+.+.. +...+.
T Consensus       334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~  410 (553)
T PRK12370        334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI  410 (553)
T ss_pred             CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence            544 5666666666777777777777777777766543 4556666677777777777777777777664322 111222


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006744          348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE  427 (632)
Q Consensus       348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  427 (632)
                      .++..+...|++++|...++++.+...+.....+..+..++...|+.++|...+.++....+.+....+.+...|+..| 
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  489 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS-  489 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH-
Confidence            2333344456666666666555543322222333344444444555555555554444433333334444444444444 


Q ss_pred             hhhHHHHHHHH
Q 006744          428 VKKALYLFGKM  438 (632)
Q Consensus       428 ~~~A~~~~~~m  438 (632)
                       ++|...++.+
T Consensus       490 -~~a~~~l~~l  499 (553)
T PRK12370        490 -ERALPTIREF  499 (553)
T ss_pred             -HHHHHHHHHH
Confidence             2444444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.35  E-value=8.9e-10  Score=102.69  Aligned_cols=199  Identities=14%  Similarity=0.023  Sum_probs=143.4

Q ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH
Q 006744          380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE  459 (632)
Q Consensus       380 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~  459 (632)
                      .+..+...+...|++++|.+.+++..+..+.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+..
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~  111 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFLCQ  111 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence            344445556666677777777776666555566777778888888888888888888777653 3345566667777788


Q ss_pred             cCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 006744          460 SGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII  538 (632)
Q Consensus       460 ~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  538 (632)
                      .|++++|.+.++++.+.... .....+..+...+...|++++|...+++.+...+.  +...+..+...+...|++++|.
T Consensus       112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~  189 (234)
T TIGR02521       112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAELYYLRGQYKDAR  189 (234)
T ss_pred             cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888764322 23445666777888888888888888887765322  3445666778888888888888


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          539 EVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       539 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      .++++..+. .+.+...+..++..+...|+.++|..+++.+.+.
T Consensus       190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            888888876 3556677777788888889999988888877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=4.6e-08  Score=94.85  Aligned_cols=284  Identities=12%  Similarity=0.024  Sum_probs=180.5

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744          272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV  351 (632)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  351 (632)
                      +........+-+...+++.+..++++.+.+..+ +....+..-|.++...|+..+-..+=.++.+.- +-...+|-++..
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence            334444555566667777777777777776533 244455555667777777766666666666543 224566777777


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhH
Q 006744          352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA  431 (632)
Q Consensus       352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  431 (632)
                      -|...|...+|.++|.+....+... ...+-.....|+-.|.-++|+..+....+.-.....-+--+..-|.+.+.++.|
T Consensus       321 YYl~i~k~seARry~SKat~lD~~f-gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKATTLDPTF-GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHhhcCccc-cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence            7777777777777777765544322 223344455566677777777777666554333222234455566777777778


Q ss_pred             HHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-C-CCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744          432 LYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM----SQ-V-PSVAAYNCLTKGLCKIGEIDAAMMLV  505 (632)
Q Consensus       432 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~-p~~~~~~~li~~~~~~g~~~~A~~~~  505 (632)
                      .+.|.+..... +-|...++-+.-.....+.+.+|..+|+..+..    +. . .-..+++.|..+|.+.+.+++|+..+
T Consensus       400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            88777776532 345555666655556677777777777776621    00 0 12345677888888888888888888


Q ss_pred             HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744          506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM  563 (632)
Q Consensus       506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  563 (632)
                      ++.+...  ..+..+|.++.-.|...|+++.|++.|.+..-.  .||-.+-..++..+
T Consensus       479 q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  479 QKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA  532 (611)
T ss_pred             HHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence            8877643  345667777777788888888888888887754  56666555555533

>PF13041 PPR_2: PPR repeat family

Probab=99.32  E-value=4.6e-12  Score=84.51  Aligned_cols=50  Identities=36%  Similarity=0.676  Sum_probs=36.5

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK  250 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  250 (632)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56777777777777777777777777777777777777777777777664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.32  E-value=2.9e-08  Score=90.43  Aligned_cols=184  Identities=9%  Similarity=0.020  Sum_probs=95.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHH
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-----HVESGDILEACECHNKIIEMSQVPSV-AAYNCL  488 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-----~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l  488 (632)
                      --.|+-.|.+++++.+|..+.+++.-  ..|-......+..+     ......+.-|.+.|+..-+.+..-|. .--.++
T Consensus       288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsm  365 (557)
T KOG3785|consen  288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSM  365 (557)
T ss_pred             hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHH
Confidence            34455567777888888777766542  23333322222221     11112244455555555444433331 122344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 006744          489 TKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC-SAIISGMCKHG  567 (632)
Q Consensus       489 i~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g  567 (632)
                      ..++.-..++|+.+-+++.+.. .-...|.+.|| +..+++..|++.+|.++|-......++ |..+| ..|.++|.++|
T Consensus       366 As~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk  442 (557)
T KOG3785|consen  366 ASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK  442 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence            5555555667777766665432 23345555565 677777777777777777665544333 34444 44556667777


Q ss_pred             CHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhH
Q 006744          568 TLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTAD  607 (632)
Q Consensus       568 ~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~  607 (632)
                      +.+.|..++-   +.+ .|......+..+-..+-+.+++-
T Consensus       443 kP~lAW~~~l---k~~-t~~e~fsLLqlIAn~CYk~~eFy  478 (557)
T KOG3785|consen  443 KPQLAWDMML---KTN-TPSERFSLLQLIANDCYKANEFY  478 (557)
T ss_pred             CchHHHHHHH---hcC-CchhHHHHHHHHHHHHHHHHHHH
Confidence            7777665543   332 22223334444444555555443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.32  E-value=7.6e-09  Score=104.58  Aligned_cols=124  Identities=15%  Similarity=0.106  Sum_probs=62.4

Q ss_pred             HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH
Q 006744          384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI  463 (632)
Q Consensus       384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~  463 (632)
                      +...|...|++++|.+.+++..+..+..+..|..-...+-+.|++.+|.+.++..+... .-|...-+.....+.+.|++
T Consensus       200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~  278 (517)
T PF12569_consen  200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRI  278 (517)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCH
Confidence            33444455555555555555555554455555555555555555555555555555543 23444444445555555555


Q ss_pred             HHHHHHHHHHHHCCCCCCHHh------H--HHHHHHHHhcCCHHHHHHHHHHH
Q 006744          464 LEACECHNKIIEMSQVPSVAA------Y--NCLTKGLCKIGEIDAAMMLVRDC  508 (632)
Q Consensus       464 ~~a~~~~~~~~~~~~~p~~~~------~--~~li~~~~~~g~~~~A~~~~~~~  508 (632)
                      ++|.+++..+.+.+..|....      |  .....+|.+.|++..|++.|..+
T Consensus       279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            555555555554433221111      1  22344555666666665555443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=1.4e-09  Score=114.03  Aligned_cols=253  Identities=11%  Similarity=0.000  Sum_probs=178.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC
Q 006744          182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLA---------AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG  252 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  252 (632)
                      +..++|+..|++..+..+. +...|..+..++.         ..+++++|...+++..+.+ +-+..++..+...+...|
T Consensus       275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            3578899999998886432 4556666655443         2345889999999999875 447788888888899999


Q ss_pred             ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006744          253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE  332 (632)
Q Consensus       253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  332 (632)
                      ++++|...|++..+.+.. +...+..+...+...|+.++|...+++..+..+. +...+..++..+...|++++|+..++
T Consensus       353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            999999999999998644 6778888999999999999999999999987654 33333445555777899999999999


Q ss_pred             HHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCCh
Q 006744          333 VTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSV  412 (632)
Q Consensus       333 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  412 (632)
                      +..+....-+...+..+..++...|+.++|...+.++...... .......+...|...|  +.|...++.+.+......
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            9876532223444666778888999999999999887654322 3333445555566666  477777777655332211


Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLN  442 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  442 (632)
                      .....+-..|.-.|+-+.+..+ +++.+.+
T Consensus       508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            1122244455556666666555 7776553

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.31  E-value=3.5e-09  Score=105.55  Aligned_cols=249  Identities=17%  Similarity=0.149  Sum_probs=138.6

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-
Q 006744          273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDS-----GY-RADLG-IYNSIIGGLCRVKQFDKAYKLFEVTVQD-----DL-  339 (632)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-  339 (632)
                      ..+...|...|...|+++.|+.+++...+.     |. .|... ..+.+...|...+++++|..+|+++...     |- 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            346666888999999999999988887653     21 12222 2334667788888888888888887642     21 


Q ss_pred             CCC-HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHH
Q 006744          340 APD-FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNI  417 (632)
Q Consensus       340 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~  417 (632)
                      .|. ..+++.|..+|.+.|++++|...++...+                            +++.......+ -...++.
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~----------------------------I~~~~~~~~~~~v~~~l~~  330 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE----------------------------IYEKLLGASHPEVAAQLSE  330 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH----------------------------HHHHhhccChHHHHHHHHH
Confidence            111 23456666677888888887777665432                            23321111111 1223566


Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhC---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744          418 LMGALLEIGEVKKALYLFGKMRGL---NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK  494 (632)
Q Consensus       418 li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  494 (632)
                      ++..++..+++++|..++....+.   -..++.                               .--..+++.|...|.+
T Consensus       331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~-------------------------------~~~a~~~~nl~~l~~~  379 (508)
T KOG1840|consen  331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN-------------------------------VNLAKIYANLAELYLK  379 (508)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHhhccccc-------------------------------hHHHHHHHHHHHHHHH
Confidence            667777777777777777654321   011111                               0112334444444444


Q ss_pred             cCCHHHHHHHHHHHhhcC----C-CCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH----hCC--CCCCHHHHHHHHHH
Q 006744          495 IGEIDAAMMLVRDCLGNV----A-SGP-TEFKYALTILHVCRSGEAEKIIEVLNEMT----QEG--CPPNEVICSAIISG  562 (632)
Q Consensus       495 ~g~~~~A~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~----~~g--~~p~~~~~~~l~~~  562 (632)
                      .|++++|.+++++++...    + ..+ ....++.+...|.+.+++++|.++|.+..    ..|  .+-...+|..|...
T Consensus       380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~  459 (508)
T KOG1840|consen  380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL  459 (508)
T ss_pred             hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            444444444444443221    0 001 11223334444444444444444444322    222  22334578889999


Q ss_pred             HHhcCCHHHHHHHHHHHH
Q 006744          563 MCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       563 ~~~~g~~~~A~~~~~~m~  580 (632)
                      |...|+++.|.++.+.+.
T Consensus       460 Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  460 YRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHcccHHHHHHHHHHHH
Confidence            999999999999887775

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.30  E-value=1.2e-09  Score=98.26  Aligned_cols=229  Identities=11%  Similarity=-0.003  Sum_probs=162.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744          207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE  286 (632)
Q Consensus       207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  286 (632)
                      +.+.+.|.+.|.+.+|.+.|+.-.+.  .|-+.||..|-+.|.+-.+.+.|+.++.+-.+. .+-|+.....+.+.+-..
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            56777888888888888888877765  566778888888888888888888888877665 222444445566777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHH
Q 006744          287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL  366 (632)
Q Consensus       287 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  366 (632)
                      ++.++|.++|+...+.... ++.....+...|.-.++.+-|+.+|+.+.+.|+. +...|+.+.-+|.-.+++|.++.-|
T Consensus       304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence            8888888888888776443 5556666667777788888888888888888876 6667777777777888888888877


Q ss_pred             HHHHHCCCC--ccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744          367 AQMEKLKFS--VAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG  440 (632)
Q Consensus       367 ~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  440 (632)
                      .+....--.  ...+++..+.......|++..|.+.|+-....+..+...+|.|...-.+.|++++|..++.....
T Consensus       382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            776654322  22233444444455566777777777766666666666777777777777777777777766554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.30  E-value=1.9e-09  Score=100.47  Aligned_cols=95  Identities=20%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744          239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL  318 (632)
Q Consensus       239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  318 (632)
                      ..+..+...+...|++++|.+.+++..+.... +...+..+...|...|++++|.+.+++..+.... +...+..+...+
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~  109 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence            33444444444445555555555444443211 2334444444444444444444444444443222 233333444444


Q ss_pred             HccCCHHHHHHHHHHHH
Q 006744          319 CRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       319 ~~~g~~~~A~~~~~~m~  335 (632)
                      ...|++++|.+.+++..
T Consensus       110 ~~~g~~~~A~~~~~~~~  126 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAI  126 (234)
T ss_pred             HHcccHHHHHHHHHHHH
Confidence            44444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.30  E-value=1.7e-07  Score=92.53  Aligned_cols=391  Identities=12%  Similarity=0.081  Sum_probs=197.4

Q ss_pred             HHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744          184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFRE  263 (632)
Q Consensus       184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  263 (632)
                      -++|.+....-.+..+ .+-++|+.+.-.+....++++|++.|......+ +.|...|.-+.-.-++.|+++.....-.+
T Consensus        57 ~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~  134 (700)
T KOG1156|consen   57 KEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQ  134 (700)
T ss_pred             hHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            3444444443333322 355667776666666677777777777766654 34555565555555556666666666555


Q ss_pred             HHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHH------HHHHccCCHHHHHHHHHHHHh
Q 006744          264 MKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY-RADLGIYNSII------GGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       264 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~~~~~~~~~li------~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      +.+.... ....|..++.++.-.|+...|..++++..+... .|+...|....      ....+.|..++|.+.+..-..
T Consensus       135 LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~  213 (700)
T KOG1156|consen  135 LLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK  213 (700)
T ss_pred             HHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh
Confidence            5554222 445566666666667777777777766665431 23443333222      234455666666665554332


Q ss_pred             CCCCCCHhcH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH-HHHHHHHhCCCCChhH
Q 006744          337 DDLAPDFSTV-NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-DVFEELKGKGYSSVPI  414 (632)
Q Consensus       337 ~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~  414 (632)
                      . + .|...+ ..-...+.+.+++++|..++..++....+ +...+..+..++++-.+.-++. .+|....+.-+.....
T Consensus       214 ~-i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPd-n~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p  290 (700)
T KOG1156|consen  214 Q-I-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPD-NLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECP  290 (700)
T ss_pred             H-H-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCch-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccc
Confidence            1 1 122222 23334556667777777777766665432 2333333444443222222232 4455444433221111


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC----------CCCCHH
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE-ACECHNKIIEMS----------QVPSVA  483 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~~----------~~p~~~  483 (632)
                      -..=+.......-.+..-.++..+.+.|+++--..+.++..-=.+..-.++ +..+...+...|          -.|...
T Consensus       291 ~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl  370 (700)
T KOG1156|consen  291 RRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL  370 (700)
T ss_pred             hhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence            111111111122223334455556666654433333222221000000000 111111111110          134433


Q ss_pred             hHH--HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006744          484 AYN--CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF-KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII  560 (632)
Q Consensus       484 ~~~--~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~  560 (632)
                      .|+  .++..|-+.|+++.|..+++..++.   .|+.+ .|-.=.+.+...|++++|..++++..+.. .+|..+-..-+
T Consensus       371 lWt~y~laqh~D~~g~~~~A~~yId~AIdH---TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcA  446 (700)
T KOG1156|consen  371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDH---TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCA  446 (700)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHhcc---CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHH
Confidence            333  4566677777888888777776643   34443 23334456667778888888877777764 55665555566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          561 SGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       561 ~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      .-..++...++|.++....-+.|.
T Consensus       447 KYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  447 KYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHccccHHHHHHHHHhhhccc
Confidence            666677777777777777777664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.30  E-value=1.6e-07  Score=92.73  Aligned_cols=390  Identities=12%  Similarity=0.053  Sum_probs=253.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744          182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF  261 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  261 (632)
                      +++...+...+.+.+. ..-...+.....-.+...|+-++|.+....-.... .-+.+.|+.+.-.+-...++++|++.|
T Consensus        21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy   98 (700)
T KOG1156|consen   21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY   98 (700)
T ss_pred             HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence            3444445555554442 11223333333344667899999999888777654 346678888888888889999999999


Q ss_pred             HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CC
Q 006744          262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-LA  340 (632)
Q Consensus       262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~  340 (632)
                      ......+.. |...+.-|.-.-++.|+++.....-..+.+..+. ....|..+..++.-.|++..|..++++..+.. -.
T Consensus        99 ~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~  176 (700)
T KOG1156|consen   99 RNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTS  176 (700)
T ss_pred             HHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999887655 7778887777777888888888888777775433 56678888999999999999999999988664 34


Q ss_pred             CCHhcHHHHH------HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhH
Q 006744          341 PDFSTVNPLL------VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI  414 (632)
Q Consensus       341 p~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  414 (632)
                      |+...|.-..      ....+.|..+.|.+.+......-++ .......-...+.+.+++++|..++..+...++.+...
T Consensus       177 ~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D-kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Y  255 (700)
T KOG1156|consen  177 PSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD-KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDY  255 (700)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHH
Confidence            5665554332      3345677778887777665443221 22233344556788999999999999999998888888


Q ss_pred             HHHHHHHHHhcCChhhHH-HHHHHHhhCC---CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          415 YNILMGALLEIGEVKKAL-YLFGKMRGLN---LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~-~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      |-.+..++.+-.+.-++. .+|....+.-   -.|-....+.    .....-.+....++..+.+.|+.+-   +..+..
T Consensus       256 y~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsv----l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~S  328 (700)
T KOG1156|consen  256 YEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSV----LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRS  328 (700)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHH----hCcchhHHHHHHHHHHHhhcCCCch---hhhhHH
Confidence            888888876333333444 6666655431   1111111111    1112223445556667777776542   333333


Q ss_pred             HHHhcCCHHHHHHHH---HHHhhcC----------CCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-H
Q 006744          491 GLCKIGEIDAAMMLV---RDCLGNV----------ASGPTEFKYA--LTILHVCRSGEAEKIIEVLNEMTQEGCPPNE-V  554 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~---~~~~~~~----------~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~  554 (632)
                      .|-.-...+--.++.   ...+...          ...|....|+  .++..+-+.|+++.|..+++...++  .|+. .
T Consensus       329 Lyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliE  406 (700)
T KOG1156|consen  329 LYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIE  406 (700)
T ss_pred             HHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHH
Confidence            333222111111111   1111111          1135555444  5677788999999999999999987  4554 4


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      .|..-.+.+.+.|++++|..++++.++.+..
T Consensus       407 ly~~KaRI~kH~G~l~eAa~~l~ea~elD~a  437 (700)
T KOG1156|consen  407 LYLVKARIFKHAGLLDEAAAWLDEAQELDTA  437 (700)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence            6667778899999999999999999998753

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=8.1e-08  Score=89.44  Aligned_cols=266  Identities=13%  Similarity=-0.006  Sum_probs=107.2

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744          272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV  351 (632)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  351 (632)
                      |+.....+.+++...|+.++|+..|++....++. +......-.-.+.+.|+++....+...+....-. ....|-.-+.
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~  308 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKY-TASHWFVHAQ  308 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhc-chhhhhhhhh
Confidence            4445555555555555555555555555443211 1111111122233445555555554444332100 1111111122


Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhH
Q 006744          352 CCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKA  431 (632)
Q Consensus       352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  431 (632)
                      ......+++.|+.+-++.++.+.. +...+-.-..++...|+.++|.-.|+......+-+..+|.-|+.+|...|++.+|
T Consensus       309 ~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            222334444444444444433221 1112222223334445555555555554444433444555555555555555555


Q ss_pred             HHHHHHHhhCCCCcCHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          432 LYLFGKMRGLNLEVNSLSFSIAI-QCHV-ESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDC  508 (632)
Q Consensus       432 ~~~~~~m~~~~~~p~~~t~~~ll-~~~~-~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~  508 (632)
                      ..+-+..... ++-+..+...+. ..|. ...--++|.+++++-.+.  .|+ ....+.+...+...|..++++.++++.
T Consensus       388 ~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~  464 (564)
T KOG1174|consen  388 NALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKH  464 (564)
T ss_pred             HHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence            4443333221 122222222221 1111 111224444444444332  222 223334444444445555555555444


Q ss_pred             hhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          509 LGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       509 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      +..   .||....+.|.+.+...+.+++|.+.|.....
T Consensus       465 L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  465 LII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             Hhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            422   34444444444444444444444444444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.27  E-value=1.5e-08  Score=102.54  Aligned_cols=290  Identities=13%  Similarity=0.090  Sum_probs=204.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc-----C
Q 006744          178 MDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG-----G  252 (632)
Q Consensus       178 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g  252 (632)
                      +.+.|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.|..-|..+..+....     .
T Consensus        14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~   91 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE   91 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence            34567777777777664443 33345556677788999999999999999999986 33444455555555222     3


Q ss_pred             ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 006744          253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLF  331 (632)
Q Consensus       253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~  331 (632)
                      +.+...++++++.+.-  |.......+.-.+..-.. -..+..++..+...|++   .+|+.|-..|......+-..+++
T Consensus        92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~  166 (517)
T PF12569_consen   92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV  166 (517)
T ss_pred             cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence            5678888999887653  333333222222222112 23455666777778764   35667777777666666666666


Q ss_pred             HHHHhC----C----------CCCCH--hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHH
Q 006744          332 EVTVQD----D----------LAPDF--STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM  395 (632)
Q Consensus       332 ~~m~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  395 (632)
                      ......    +          -.|..  .++..+...|...|++++|+++++..+++.+. ...++..-..++...|+++
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~  245 (517)
T PF12569_consen  167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLK  245 (517)
T ss_pred             HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHH
Confidence            665432    1          12333  24455667888999999999999999988643 4678888889999999999


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHH--------HHHHHHHHHHcCCHHHHH
Q 006744          396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS--------FSIAIQCHVESGDILEAC  467 (632)
Q Consensus       396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t--------~~~ll~~~~~~g~~~~a~  467 (632)
                      +|.+.++.....+..|-.+=+-.+..+.+.|++++|.+++......+..|-...        ......+|.+.|++..|+
T Consensus       246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL  325 (517)
T PF12569_consen  246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL  325 (517)
T ss_pred             HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999888888888889999999999999999999987765332211        133456889999999998


Q ss_pred             HHHHHHHH
Q 006744          468 ECHNKIIE  475 (632)
Q Consensus       468 ~~~~~~~~  475 (632)
                      +.|..+.+
T Consensus       326 k~~~~v~k  333 (517)
T PF12569_consen  326 KRFHAVLK  333 (517)
T ss_pred             HHHHHHHH
Confidence            88776664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.26  E-value=1.7e-11  Score=81.78  Aligned_cols=49  Identities=47%  Similarity=0.813  Sum_probs=27.8

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744          236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV  284 (632)
Q Consensus       236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  284 (632)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.25  E-value=9.1e-08  Score=87.26  Aligned_cols=410  Identities=11%  Similarity=0.034  Sum_probs=199.7

Q ss_pred             CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHH
Q 006744          129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTA  208 (632)
Q Consensus       129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  208 (632)
                      .|+++.|+..+..++...  .++...+-.|..++.-.|.+.+|..+-....                     .+...-..
T Consensus        70 LgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~---------------------k~pL~~RL  126 (557)
T KOG3785|consen   70 LGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAP---------------------KTPLCIRL  126 (557)
T ss_pred             hccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCC---------------------CChHHHHH
Confidence            456777777777665533  4444455445555555555555544433211                     12223333


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHH-HHHHHHhcC
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV-LIEGLVGEG  287 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g  287 (632)
                      |++.-.+.++-++-..+-+.+.+.     ...-.+|....-..-.+.+|++++.+....+  |+-...|. +.-+|.+..
T Consensus       127 lfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlD  199 (557)
T KOG3785|consen  127 LFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLD  199 (557)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcc
Confidence            444444556555555544444321     1222223333333345666666666665542  22222222 223455555


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc-----CChhHH
Q 006744          288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM-----GRMDNF  362 (632)
Q Consensus       288 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~a  362 (632)
                      -++-+.++++-....-.. +...-|.......+.=.-..|+.-..++...+-.    .|- .+.-.++.     ..-+.|
T Consensus       200 Yydvsqevl~vYL~q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~~-f~~~l~rHNLVvFrngEgA  273 (557)
T KOG3785|consen  200 YYDVSQEVLKVYLRQFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EYP-FIEYLCRHNLVVFRNGEGA  273 (557)
T ss_pred             hhhhHHHHHHHHHHhCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cch-hHHHHHHcCeEEEeCCccH
Confidence            566666666555543211 2333333333333322222333333333322211    011 11111221     233455


Q ss_pred             HHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-------ChhhHHHHH
Q 006744          363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG-------EVKKALYLF  435 (632)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~~~  435 (632)
                      ++++--+.+.-    +...-.++..|.+.+++.+|..+.+++...   ++.-|-.-...++..|       ...-|.+.|
T Consensus       274 LqVLP~L~~~I----PEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt---tP~EyilKgvv~aalGQe~gSreHlKiAqqff  346 (557)
T KOG3785|consen  274 LQVLPSLMKHI----PEARLNLIIYYLNQNDVQEAISLCKDLDPT---TPYEYILKGVVFAALGQETGSREHLKIAQQFF  346 (557)
T ss_pred             HHhchHHHhhC----hHhhhhheeeecccccHHHHHHHHhhcCCC---ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHH
Confidence            55555444321    122223444466778888877776654322   2222222222222223       233444444


Q ss_pred             HHHhhCCCCcCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744          436 GKMRGLNLEVNSLS-FSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS  514 (632)
Q Consensus       436 ~~m~~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  514 (632)
                      .-.-..+..-|... -.++..++.-..++++.+.+++.+...-...|...+| +..+++..|.+.+|.++|-.+-.  ..
T Consensus       347 qlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~--~~  423 (557)
T KOG3785|consen  347 QLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG--PE  423 (557)
T ss_pred             HHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC--hh
Confidence            44433333333221 2334444455566777777777776655555555555 66777778888888888765431  11


Q ss_pred             CChHHHHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744          515 GPTEFKYA-LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI-CSAIISGMCKHGTLEEARKVFTNLRERKLLTE  587 (632)
Q Consensus       515 ~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  587 (632)
                      -.|..+|. .|.++|.+.++.+.|.+++-++..   +-+..+ ...+..-|.+++.+=-|-+.|+.+...++.|.
T Consensus       424 ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE  495 (557)
T KOG3785|consen  424 IKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE  495 (557)
T ss_pred             hhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence            13444554 455666777888777666544432   223333 33445567788888788888888877776653

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=9.4e-10  Score=98.84  Aligned_cols=228  Identities=12%  Similarity=0.051  Sum_probs=110.2

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc
Q 006744          312 NSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE  391 (632)
Q Consensus       312 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  391 (632)
                      +.|..+|.+.|.+.+|.+.|+...+.  .|-..||..|-++|.+..+.+.|+.++.+-.+. ++.+.........++...
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam  303 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM  303 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence            44556666666666666666655543  233345555556666666666666655554443 222333333344444444


Q ss_pred             ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006744          392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN  471 (632)
Q Consensus       392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~  471 (632)
                      ++.++|.++|+.+.+....++.....+...|.-.++.+-|+.+|+++.+.|+ -+...|+.+.-+|.-.+++|-++..|.
T Consensus       304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            5555555555555555444555555555555555555555555555555553 234444444445555555555555555


Q ss_pred             HHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          472 KIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT  545 (632)
Q Consensus       472 ~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  545 (632)
                      +....-..|+  ..+|-.|....+..|++.-|.+.|+-++...  ......++.|...-.+.|++++|..+++...
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~i~~Arsll~~A~  456 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGDILGARSLLNAAK  456 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence            4443322222  2333334444444455555544444443221  1122333333333344444444444444333

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=4.3e-06  Score=81.97  Aligned_cols=135  Identities=12%  Similarity=0.047  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCChHHHHHHHHHHHHHcCCHH
Q 006744          463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL-------GNVASGPTEFKYALTILHVCRSGEAE  535 (632)
Q Consensus       463 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~p~~~~~~~l~~~~~~~g~~~  535 (632)
                      ..++.+++....+....-...+.-.++......|+++.|++++....       .+....|..+.+  +...+.+.++.+
T Consensus       357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~a--iv~l~~~~~~~~  434 (652)
T KOG2376|consen  357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGA--IVALYYKIKDND  434 (652)
T ss_pred             HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHH--HHHHHHhccCCc
Confidence            44555555555443222223344445555666777777777766211       112333443333  444455555555


Q ss_pred             HHHHHHHHHHhC--CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744          536 KIIEVLNEMTQE--GCPPNEV----ICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK  602 (632)
Q Consensus       536 ~a~~~~~~m~~~--g~~p~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~  602 (632)
                      .|..++.+....  .-.+...    ++.-++..-.+.|+-++|..+++++.+.+.   +++.+...++.++.+
T Consensus       435 ~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~---~d~~~l~~lV~a~~~  504 (652)
T KOG2376|consen  435 SASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP---NDTDLLVQLVTAYAR  504 (652)
T ss_pred             cHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC---chHHHHHHHHHHHHh
Confidence            555555544321  0011112    222223333355777777777777776543   244455555555554

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.17  E-value=2.4e-08  Score=99.78  Aligned_cols=244  Identities=18%  Similarity=0.172  Sum_probs=157.2

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----CC-cccHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKEN-----GI-LIDRA-IYGVLIEGLVGEGKVGKACDLLKDLVDS-----GYR  305 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~  305 (632)
                      ..+...+...|...|+++.|..+++...+.     |. .|... ..+.+...|...+++++|..+|+++...     |-.
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456666888999999999999999887654     21 22222 3344777899999999999999998752     322


Q ss_pred             -C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCCHh-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc
Q 006744          306 -A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-----DL-APDFS-TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV  376 (632)
Q Consensus       306 -~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  376 (632)
                       | -..+++.|..+|++.|++++|..+++...+-     |. .+... .++.+...|+..+++++|..++....+     
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~-----  353 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK-----  353 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH-----
Confidence             1 2457888888999999999999888776531     11 11222 245556667777788887777765433     


Q ss_pred             cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC-------CCcCHH
Q 006744          377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLN-------LEVNSL  448 (632)
Q Consensus       377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------~~p~~~  448 (632)
                                             ++........ .-..+++.|...|.+.|++++|.+++++.....       ..-...
T Consensus       354 -----------------------i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~  410 (508)
T KOG1840|consen  354 -----------------------IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK  410 (508)
T ss_pred             -----------------------HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence                                   2221111111 134578888888888888888888888775431       111133


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIE----MSQV-PS-VAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      .++.+...|.+.+.+++|.++|.+...    .|.. |+ ..+|..|...|...|++++|+++.+.+.
T Consensus       411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            456666667777777766666654432    2221 22 4556667777777777777777666544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.16  E-value=7.8e-07  Score=89.77  Aligned_cols=446  Identities=14%  Similarity=0.063  Sum_probs=282.2

Q ss_pred             CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHH---HHHhCCChhHHhHHHHH----HHhcCCHHHHHHH----HHHHHhC
Q 006744          129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAY---CLSRNNLFRAADQVPEL----MDSQGRIAEMLEI----LEKMRRN  197 (632)
Q Consensus       129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~l~~~----~~~~g~~~~a~~~----~~~m~~~  197 (632)
                      .++++.++.-+..... .++.-+..++..+-.   .|...++.+++ .++..    +..+.+.+++.-.    +.++...
T Consensus       240 ~~~~~~~i~s~~~~l~-~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~  317 (799)
T KOG4162|consen  240 LSGPKEAIKSYRRALL-RSWSLDPLTKARLYKGFALFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLK  317 (799)
T ss_pred             CCCchHHHHhhhHHhh-cccccchhHHHHHhhcccccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHh
Confidence            4466667766665544 345556555555443   34455666665 22222    2234455665443    3334444


Q ss_pred             CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc-cHHhH
Q 006744          198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI-DRAIY  276 (632)
Q Consensus       198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~  276 (632)
                      .+..|...|..|.-++...|+++.+.+.|++....- --....|+.+...+...|.-..|..+++........| |...+
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            556788999999999999999999999999877542 2356778888889999999999999998876654334 34444


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCC-
Q 006744          277 GVLIEGLV-GEGKVGKACDLLKDLVDS--GY--RADLGIYNSIIGGLCRV-----------KQFDKAYKLFEVTVQDDL-  339 (632)
Q Consensus       277 ~~li~~~~-~~g~~~~a~~~~~~m~~~--g~--~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~-  339 (632)
                      -..-..|. +.|.+++++++-.+..+.  +.  ......|..+.-+|...           ....++++.+++..+.+. 
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~  476 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT  476 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            44444444 456777777777776652  11  11333444444444422           224577888888877653 


Q ss_pred             CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744          340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM  419 (632)
Q Consensus       340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  419 (632)
                      .|+...|  +.--|+..++++.|.+...+..+.+...+...+..+..++...+++.+|+.+.+...+....|......-+
T Consensus       477 dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~  554 (799)
T KOG4162|consen  477 DPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI  554 (799)
T ss_pred             CchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence            3433333  33456678899999999999999877777888888888888999999999998876654332211111111


Q ss_pred             HHHHhcCChhhHHHHHHHHh---------------------------------------------------hCC------
Q 006744          420 GALLEIGEVKKALYLFGKMR---------------------------------------------------GLN------  442 (632)
Q Consensus       420 ~~~~~~g~~~~A~~~~~~m~---------------------------------------------------~~~------  442 (632)
                      ..-..-++.++|+.....+.                                                   ..|      
T Consensus       555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp  634 (799)
T KOG4162|consen  555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP  634 (799)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence            11111222222222111110                                                   000      


Q ss_pred             ---CC--cC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          443 ---LE--VN------SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       443 ---~~--p~------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                         +.  |+      ...+......+.+.+..++|..++.+..+.. .-....|......+...|.+++|.+.|...+.-
T Consensus       635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l  713 (799)
T KOG4162|consen  635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL  713 (799)
T ss_pred             cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence               00  11      0122334445666777777777777776532 234556666667777888888888888877643


Q ss_pred             CCCCCh-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          512 VASGPT-EFKYALTILHVCRSGEAEKIIE--VLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       512 ~~~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                         .|+ +...+++...+.+.|+...|..  ++.++.+.+ +.+...|..+...+.+.|+.+.|-+.|....+...
T Consensus       714 ---dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  714 ---DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             ---CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence               333 3456678888888887777777  888888886 67888888898888899999998888888877654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=2e-06  Score=80.40  Aligned_cols=293  Identities=14%  Similarity=0.047  Sum_probs=211.7

Q ss_pred             hcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhc-HHHHHHHHHhcCChhHH
Q 006744          285 GEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST-VNPLLVCCAEMGRMDNF  362 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a  362 (632)
                      -.++...+...+-.+... -+.-|+.....+...+...|+.++|+..|++....  .|+..+ .....-.+...|+.+..
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~  285 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQD  285 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhH
Confidence            345555555555444433 24457788899999999999999999999987754  333222 22223344577888888


Q ss_pred             HHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 006744          363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN  442 (632)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  442 (632)
                      ..+...+....-.....++. -.......++++.|..+-++....+..+...|-.-...+...|+.++|.-.|+..+...
T Consensus       286 ~~L~~~Lf~~~~~ta~~wfV-~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La  364 (564)
T KOG1174|consen  286 SALMDYLFAKVKYTASHWFV-HAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA  364 (564)
T ss_pred             HHHHHHHHhhhhcchhhhhh-hhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc
Confidence            88887776543111111111 12223456789999999999988887788888888889999999999999999987642


Q ss_pred             CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH-HHHH-hcCCHHHHHHHHHHHhhcCCCCChHH-
Q 006744          443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT-KGLC-KIGEIDAAMMLVRDCLGNVASGPTEF-  519 (632)
Q Consensus       443 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~p~~~-  519 (632)
                       +-+...|.-++..|...|.+.+|...-+...+. +.-+..+.+.+. ..+. .-..-++|.+++++.+..   .|+-. 
T Consensus       365 -p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~---~P~Y~~  439 (564)
T KOG1174|consen  365 -PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI---NPIYTP  439 (564)
T ss_pred             -hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc---CCccHH
Confidence             457789999999999999999998887776653 233555555442 2222 223358899999987643   45532 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744          520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE  587 (632)
Q Consensus       520 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  587 (632)
                      ..+.+...+...|..+.++.+++.....  .+|....+.|.+.+...+.+++|++.|....+.++...
T Consensus       440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  440 AVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            3445666677889999999999998875  68999999999999999999999999999998887643

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=5.2e-06  Score=81.42  Aligned_cols=163  Identities=16%  Similarity=0.192  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHh--cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHCCCCCCH
Q 006744          413 PIYNILMGALLE--IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHN--------KIIEMSQVPSV  482 (632)
Q Consensus       413 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~--------~~~~~~~~p~~  482 (632)
                      ..+.+++..+.+  .....+|.+++...-+..-.-.......+++.....|+++.|.+++.        .+.+.+..  +
T Consensus       340 ~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P  417 (652)
T KOG2376|consen  340 SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--P  417 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--h
Confidence            334444444332  23466777777777654322234566667778889999999999999        55554443  4


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-CChHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS-GPTEFKYAL----TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICS  557 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  557 (632)
                      .+...++..+.+.++-+.|..++.+.+..... .+......+    ++..-.+.|+-++|..+++++.+.. ++|..+..
T Consensus       418 ~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~  496 (652)
T KOG2376|consen  418 GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLV  496 (652)
T ss_pred             hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHH
Confidence            45567777888888877777777766532111 111122222    3333347799999999999999974 78999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHH
Q 006744          558 AIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       558 ~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      .++.+|++. +.+.|..+-+.+
T Consensus       497 ~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  497 QLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHhc-CHHHHHHHhhcC
Confidence            999999876 467777665444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.8e-05  Score=82.32  Aligned_cols=181  Identities=11%  Similarity=0.069  Sum_probs=112.4

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      ...+|..+..+-.+.|...+|.+-|-+.      -|...|..+++...+.|.+++-..++....+....|.+.  +.||-
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence            4567899999999999999998877543      366789999999999999999999999888876666654  57888


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--------------------CCC
Q 006744          491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE--------------------GCP  550 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--------------------g~~  550 (632)
                      +|++.+++.+-.+++.        +|+......+.+-|...|.++.|.-++.....-                    .-.
T Consensus      1175 AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred             HHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            9999998887766542        344444444455555555554444443321100                    001


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744          551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK  614 (632)
Q Consensus       551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~  614 (632)
                      .+..||..+-.+|...+.+.-|.     |-..++..  -..-+..++..|...+-+++++..|+
T Consensus      1247 ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iiv--hadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1247 NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIV--HADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred             cchhHHHHHHHHHhchhhhhHHH-----hcCceEEE--ehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence            23445555555555444333221     11122211  22234556666666666776666665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.06  E-value=2.9e-07  Score=88.25  Aligned_cols=119  Identities=13%  Similarity=-0.070  Sum_probs=62.4

Q ss_pred             CCHHHHHHHHHHHHhCCC-CcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744          182 GRIAEMLEILEKMRRNLC-KPD--VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH  258 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~-~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  258 (632)
                      +..+.++.-+.++..... .|+  ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            344555555555554311 111  2335555555555666666666665555543 234455555555566666666666


Q ss_pred             HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      +.|++..+.... +..+|..+..++...|++++|.+.|+...+.
T Consensus       119 ~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        119 EAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            666655554322 3445555555555556666666666555554

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=1.4e-06  Score=84.42  Aligned_cols=387  Identities=11%  Similarity=0.047  Sum_probs=214.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChh
Q 006744          177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD-VMAYVTLIMGLCKGGRVV  255 (632)
Q Consensus       177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~  255 (632)
                      ...+.|+++.|+..|.+.+..... |-+.|..-..+|+..|++++|++=-.+-++.  .|+ ...|.-...++.-.|+++
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence            344678999999999999887654 8888999999999999999998877766655  455 467888999999999999


Q ss_pred             HHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHH---HHHHHHHHC---CCCCCHhhHHHHHHHHHcc--------
Q 006744          256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC---DLLKDLVDS---GYRADLGIYNSIIGGLCRV--------  321 (632)
Q Consensus       256 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~---~~~~~m~~~---g~~~~~~~~~~li~~~~~~--------  321 (632)
                      +|+.-|.+-.+.... +...++.|.+++.......+..   .++..+...   ........|..++..+-+.        
T Consensus        88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l  166 (539)
T KOG0548|consen   88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL  166 (539)
T ss_pred             HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence            999999998887544 6778888888872110000000   011111110   0000112233333322211        


Q ss_pred             --CCHHHHHHHHHHH-----HhCC-------CCC------------C----------HhcHHHHHHHHHhcCChhHHHHH
Q 006744          322 --KQFDKAYKLFEVT-----VQDD-------LAP------------D----------FSTVNPLLVCCAEMGRMDNFFKL  365 (632)
Q Consensus       322 --g~~~~A~~~~~~m-----~~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a~~~  365 (632)
                        .++..|...+...     ...+       ..|            |          ..-...+.++..+..+++.+.+-
T Consensus       167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~  246 (539)
T KOG0548|consen  167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH  246 (539)
T ss_pred             ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence              1111222111100     0000       111            0          11233455555566667777777


Q ss_pred             HHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCChhhHHHHHHHH
Q 006744          366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL-------MGALLEIGEVKKALYLFGKM  438 (632)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m  438 (632)
                      +.......  -+...++....+|...|.+..+...-....+.|.....-|+.+       ..+|.+.++++.|...|.+.
T Consensus       247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka  324 (539)
T KOG0548|consen  247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA  324 (539)
T ss_pred             HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence            77666655  3455555666667777777776666666555554333333333       33455566677777777765


Q ss_pred             hhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744          439 RGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV-AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT  517 (632)
Q Consensus       439 ~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~  517 (632)
                      ......|+..+         +....+++........-.+  |.. .-...-...+.+.|++..|++.|.+++...  .-|
T Consensus       325 Lte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~D  391 (539)
T KOG0548|consen  325 LTEHRTPDLLS---------KLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PED  391 (539)
T ss_pred             hhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cch
Confidence            54433333211         1222223322222222211  111 111112444556666667776666666542  334


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      ...|.....+|.+.|.+..|+.=.+...+.. ++....|..=..++....+++.|.+.|.+.++.+
T Consensus       392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  392 ARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4556666666666666666666666665552 3334445555555555566666666666666665

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.04  E-value=3.2e-07  Score=79.20  Aligned_cols=57  Identities=12%  Similarity=0.054  Sum_probs=23.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK  371 (632)
Q Consensus       314 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  371 (632)
                      |.-.|...|++..|.+-+++.++.+.. +..++..+...|.+.|+.+.|.+.|++..+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls   97 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALS   97 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHh
Confidence            333444444444444444444443211 223333333444444444444444444333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.04  E-value=7.2e-06  Score=83.04  Aligned_cols=394  Identities=12%  Similarity=0.094  Sum_probs=232.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH------------------hcCCHHHHHHHHHHHHhCCCCcC-HHhH
Q 006744          146 KGYKHNFASYNALAYCLSRNNLFRAADQVPELMD------------------SQGRIAEMLEILEKMRRNLCKPD-VFAY  206 (632)
Q Consensus       146 ~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~------------------~~g~~~~a~~~~~~m~~~~~~~~-~~~~  206 (632)
                      ..+..|...|..|.-++.+.|+++.+.+.|++..                  ..|.-..|+.+++.-......|+ ...+
T Consensus       317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            3456788888888888888888888888887654                  23455566677766554432233 3333


Q ss_pred             HHHHHHHH-hcCChhHHHHHHHHHHhC--C--CCcCHHhHHHHHHHHHhc-----------CChhHHHHHHHHHHHcCCc
Q 006744          207 TAMIRVLA-AERNLDACLRVWEEMKKD--L--VEADVMAYVTLIMGLCKG-----------GRVVRGHELFREMKENGIL  270 (632)
Q Consensus       207 ~~li~~~~-~~g~~~~A~~~~~~m~~~--~--~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~  270 (632)
                      -..-..|. +.+.++++++.-.+....  +  -......|..+.-+|...           ....++++.+++..+.+..
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~  476 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT  476 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33333333 346666666666555541  1  012334454444444322           1234666777777665443


Q ss_pred             ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHhcHHHH
Q 006744          271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLAPDFSTVNPL  349 (632)
Q Consensus       271 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l  349 (632)
                       |..+...+.--|+..++++.|.+...+..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |.  |......-
T Consensus       477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~  553 (799)
T KOG4162|consen  477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGK  553 (799)
T ss_pred             -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhh
Confidence             333333444456777888888888888887755557888888888888888888888888766543 21  10000111


Q ss_pred             HHHHHhcCChhHHHHHHHHHHH---------------------CCCC-----c--cccHHHHHHHHhhhcc---cHHHHH
Q 006744          350 LVCCAEMGRMDNFFKLLAQMEK---------------------LKFS-----V--AADLEKFFEFLVGKEE---RIMMAL  398 (632)
Q Consensus       350 l~~~~~~~~~~~a~~~~~~~~~---------------------~~~~-----~--~~~~~~~l~~~~~~~g---~~~~a~  398 (632)
                      +..-...++.+++......+..                     .|..     +  ....+..+.......+   ..+...
T Consensus       554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L  633 (799)
T KOG4162|consen  554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL  633 (799)
T ss_pred             hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence            1111112333333222222110                     1110     0  0011111111111000   000000


Q ss_pred             HHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          399 DVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       399 ~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      ..+.........   ....|......+.+.+..++|...+.+..... .-....|......+...|..++|.+.|.....
T Consensus       634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~  712 (799)
T KOG4162|consen  634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA  712 (799)
T ss_pred             CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh
Confidence            000000000000   13457778888999999999998888887643 44556677777788899999999999999887


Q ss_pred             CCCCCC-HHhHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          476 MSQVPS-VAAYNCLTKGLCKIGEIDAAMM--LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       476 ~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      ..  |+ +....++..++.+.|+..-|..  ++.++++-....  ...|..+...+-+.|+.+.|.+.|....+.
T Consensus       713 ld--P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n--~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  713 LD--PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN--HEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             cC--CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            43  44 6677889999999998777777  999988765443  445666899999999999999999988775

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.03  E-value=3.1e-07  Score=88.04  Aligned_cols=187  Identities=11%  Similarity=-0.007  Sum_probs=81.4

Q ss_pred             hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744          388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC  467 (632)
Q Consensus       388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~  467 (632)
                      |...|+.++|...|++..+..+.+...|+.+...+...|++++|...|++..+.. +-+..++..+..++...|++++|.
T Consensus        74 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~  152 (296)
T PRK11189         74 YDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQ  152 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3344444444444444444444445555555555555555555555555555422 112334444444555555555555


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      +.|+...+..  |+..........+...++.++|...|++.....  .++...+   .......|+...+ +.++.+.+.
T Consensus       153 ~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~--~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~  224 (296)
T PRK11189        153 DDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL--DKEQWGW---NIVEFYLGKISEE-TLMERLKAG  224 (296)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC--CccccHH---HHHHHHccCCCHH-HHHHHHHhc
Confidence            5555555432  221111111111223445555555554433211  1221111   1122223333222 222222211


Q ss_pred             ---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          548 ---GC---PPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       548 ---g~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                         ..   +.....|..+...+.+.|++++|...|++..+.+
T Consensus       225 ~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        225 ATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence               00   1123456666666666666666666666666655

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.02  E-value=2.1e-06  Score=85.65  Aligned_cols=198  Identities=12%  Similarity=0.034  Sum_probs=97.2

Q ss_pred             HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcCH--HHHHHHHHHHHHcCC
Q 006744          386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL-EVNS--LSFSIAIQCHVESGD  462 (632)
Q Consensus       386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~t~~~ll~~~~~~g~  462 (632)
                      ..+...|++++|.+.+++..+..+.+...+..+...|...|++++|...+++.....- .++.  ..|..+...+...|+
T Consensus       122 ~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~  201 (355)
T cd05804         122 FGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD  201 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence            3444555555555555555555555555566666666666666666666666554321 1221  233445556666677


Q ss_pred             HHHHHHHHHHHHHCCCC-CCHHhH-H--HHHHHHHhcCCHHHHHHH---HHHHhhcCCCCChHHHHHHHHHHHHHcCCHH
Q 006744          463 ILEACECHNKIIEMSQV-PSVAAY-N--CLTKGLCKIGEIDAAMML---VRDCLGNVASGPTEFKYALTILHVCRSGEAE  535 (632)
Q Consensus       463 ~~~a~~~~~~~~~~~~~-p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  535 (632)
                      +++|..+++++...... +..... +  .++.-+...|..+.+.+.   ......................++...|+.+
T Consensus       202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence            77777776666432211 111111 1  222222333322222221   1111000000111111123555666777788


Q ss_pred             HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          536 KIIEVLNEMTQEGCP--------PNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       536 ~a~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      .|..+++.+......        ...........++...|+.++|.+.+.......
T Consensus       282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            888877776653211        012222233334567888888888888777654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=1.2e-06  Score=88.56  Aligned_cols=45  Identities=11%  Similarity=0.056  Sum_probs=34.1

Q ss_pred             cCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH
Q 006744          128 VENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD  179 (632)
Q Consensus       128 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~  179 (632)
                      ..|+.+.|.+-.+.+       -+...|..+.++|.+.++++-|.-.+..|.
T Consensus       740 tiG~MD~AfksI~~I-------kS~~vW~nmA~McVkT~RLDVAkVClGhm~  784 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI-------KSDSVWDNMASMCVKTRRLDVAKVCLGHMK  784 (1416)
T ss_pred             EeccHHHHHHHHHHH-------hhhHHHHHHHHHhhhhccccHHHHhhhhhh
Confidence            456777776665544       245689999999999999999988776665

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.01  E-value=5.4e-07  Score=77.81  Aligned_cols=198  Identities=16%  Similarity=0.121  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC  319 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  319 (632)
                      +...|.-+|...|+...|.+-+++.++.+.. +..+|..+...|-+.|+.+.|.+.|++..+..+. +..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            3444556667777777777777777766444 5566677777777777777777777777766544 5556666666777


Q ss_pred             ccCCHHHHHHHHHHHHhCCCC-CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH
Q 006744          320 RVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL  398 (632)
Q Consensus       320 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  398 (632)
                      ..|++++|...|++....-.- --..+|..+.-+..+.|+.+.|...|++..+....                       
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-----------------------  171 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-----------------------  171 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-----------------------
Confidence            777777777777766654211 12345656655656666666666666665554332                       


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          399 DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                                  .....-.+.....+.|++-.|...++.....+. ++..+....|..-...|+.+.+.++=..+.+
T Consensus       172 ------------~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         172 ------------FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             ------------CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence                        333344455555555666666666665555443 5555555555555566666655555444444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.99  E-value=4.5e-06  Score=83.27  Aligned_cols=309  Identities=13%  Similarity=0.029  Sum_probs=143.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CcCH-HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLV-EADV-MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      ...|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+++++..+.... |...+.. .
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~   83 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-h
Confidence            34455555666666777766666655444321 1121 11222233445567777777777776665322 3333331 1


Q ss_pred             HHHH----hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh
Q 006744          281 EGLV----GEGKVGKACDLLKDLVDSGYRAD-LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE  355 (632)
Q Consensus       281 ~~~~----~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  355 (632)
                      ..+.    ..+..+.+.+.++..  ....|+ ......+...+...|++++|...+++..+.... +...+..+...+..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~  160 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM  160 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence            1222    233344444444331  111122 223334445666677777777777766654322 33344555566666


Q ss_pred             cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 006744          356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF  435 (632)
Q Consensus       356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  435 (632)
                      .|++++|..++++..+..... ...                              ....|..+...+...|++++|..++
T Consensus       161 ~g~~~eA~~~l~~~l~~~~~~-~~~------------------------------~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         161 QGRFKEGIAFMESWRDTWDCS-SML------------------------------RGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             cCCHHHHHHHHHhhhhccCCC-cch------------------------------hHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            666666666666655432210 000                              1223445556666666666666666


Q ss_pred             HHHhhCCC-CcCHHHH-H--HHHHHHHHcCCHHHHHHH--H-HHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          436 GKMRGLNL-EVNSLSF-S--IAIQCHVESGDILEACEC--H-NKIIEMSQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       436 ~~m~~~~~-~p~~~t~-~--~ll~~~~~~g~~~~a~~~--~-~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      ++...... .+..... +  .++.-+...|..+.+.+.  . ........ ............++...|+.++|..+++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~  289 (355)
T cd05804         210 DTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA  289 (355)
T ss_pred             HHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            66543221 1111111 1  222222233322222222  1 11111100 01111222455566677788888887777


Q ss_pred             HhhcCCC---CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          508 CLGNVAS---GP----TEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       508 ~~~~~~~---~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      +......   ..    .....-....++...|+.++|.+.+.+....
T Consensus       290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6543211   00    1111222333445778888888887776543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.94  E-value=1.2e-05  Score=90.98  Aligned_cols=393  Identities=10%  Similarity=-0.005  Sum_probs=223.5

Q ss_pred             HHHHHHHHHHHhC----CChhHHhHHHH----HHHhcCCHHHHHHHHHHHHhCCCCcCH-HhHHHHHHHHHhcCChhHHH
Q 006744          153 ASYNALAYCLSRN----NLFRAADQVPE----LMDSQGRIAEMLEILEKMRRNLCKPDV-FAYTAMIRVLAAERNLDACL  223 (632)
Q Consensus       153 ~~~~~li~~~~~~----~~~~~a~~l~~----~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~A~  223 (632)
                      +.|+.++.-+.+.    ...+....+..    .+...|++.+|.........   .+.. .........+...|+++.+.
T Consensus       318 yr~H~L~r~~l~~~l~~~~~~~~~~lh~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~  394 (903)
T PRK04841        318 FRYHPLFASFLRHRCQWELAQELPELHRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLE  394 (903)
T ss_pred             EehhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHH
Confidence            4466666555433    23444434433    34456777777665544321   1100 11112223445567777777


Q ss_pred             HHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC------ccc--HHhHHHHHHHHHhcCCHHHHHHH
Q 006744          224 RVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI------LID--RAIYGVLIEGLVGEGKVGKACDL  295 (632)
Q Consensus       224 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~------~p~--~~~~~~li~~~~~~g~~~~a~~~  295 (632)
                      .+++.+.......+..........+...|++++|..++....+.--      .+.  ......+...+...|++++|...
T Consensus       395 ~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  474 (903)
T PRK04841        395 ECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERL  474 (903)
T ss_pred             HHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            7776653211111222233444555677899999888887654211      111  12222334556678999999999


Q ss_pred             HHHHHHCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CC--CHhcHHHHHHHHHhcCChhHHHHHH
Q 006744          296 LKDLVDSGYRAD----LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL---AP--DFSTVNPLLVCCAEMGRMDNFFKLL  366 (632)
Q Consensus       296 ~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~  366 (632)
                      +++....-...+    ...++.+...+...|++++|...+++......   .+  ...++..+...+...|+++.|...+
T Consensus       475 ~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~  554 (903)
T PRK04841        475 AELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQ  554 (903)
T ss_pred             HHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            988766311112    12445566677788999999988887764211   11  1223445566778889999998888


Q ss_pred             HHHHHC----CCCc---cccHHHHHHHHhhhcccHHHHHHHHHHHHhC----CCC-ChhHHHHHHHHHHhcCChhhHHHH
Q 006744          367 AQMEKL----KFSV---AADLEKFFEFLVGKEERIMMALDVFEELKGK----GYS-SVPIYNILMGALLEIGEVKKALYL  434 (632)
Q Consensus       367 ~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~li~~~~~~g~~~~A~~~  434 (632)
                      ++....    +...   .......+..++...|++++|...+.+....    +.. ....+..+...+...|++++|...
T Consensus       555 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  634 (903)
T PRK04841        555 EKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRY  634 (903)
T ss_pred             HHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            776542    2111   1122333445566679999998888776442    111 234455566777888999999888


Q ss_pred             HHHHhhCCCCc-CHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHH
Q 006744          435 FGKMRGLNLEV-NSLSF-----SIAIQCHVESGDILEACECHNKIIEMSQVPS---VAAYNCLTKGLCKIGEIDAAMMLV  505 (632)
Q Consensus       435 ~~~m~~~~~~p-~~~t~-----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~  505 (632)
                      +.+.....-.. ....+     ...+..+...|+.+.|..++...........   ...+..+..++...|+.++|...+
T Consensus       635 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l  714 (903)
T PRK04841        635 LNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIIL  714 (903)
T ss_pred             HHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            87775421000 11111     1112334557888888888766543211111   111345666778888899998888


Q ss_pred             HHHhhcC---CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          506 RDCLGNV---ASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       506 ~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                      ++++...   +...+ ..+...+..++...|+.++|...+.+..+..
T Consensus       715 ~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        715 EELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            8876431   11221 2345556667778889899988888887764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.94  E-value=1.1e-05  Score=91.22  Aligned_cols=338  Identities=11%  Similarity=-0.012  Sum_probs=211.8

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCC--HhhHHHHHHHH
Q 006744          247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY------RAD--LGIYNSIIGGL  318 (632)
Q Consensus       247 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~------~~~--~~~~~~li~~~  318 (632)
                      .....|+++.+..+++.+.......+..........+...|+++++...++.....--      .+.  ......+...+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            3445577777777766552211111222334445566778999999999987754311      111  11222233456


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCH----hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-----cccHHHHHHHHhh
Q 006744          319 CRVKQFDKAYKLFEVTVQDDLAPDF----STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV-----AADLEKFFEFLVG  389 (632)
Q Consensus       319 ~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~  389 (632)
                      ...|++++|...+++........+.    ...+.+...+...|+++.|...+.+.....-..     .......+..++.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            6899999999999987753111121    233455566778999999999998876432111     1123344556677


Q ss_pred             hcccHHHHHHHHHHHHhC----CCC----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC--CCc--CHHHHHHHHHHH
Q 006744          390 KEERIMMALDVFEELKGK----GYS----SVPIYNILMGALLEIGEVKKALYLFGKMRGLN--LEV--NSLSFSIAIQCH  457 (632)
Q Consensus       390 ~~g~~~~a~~~~~~~~~~----~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p--~~~t~~~ll~~~  457 (632)
                      ..|+++.|...+++....    +..    ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            899999999998875442    211    22345556677788899999999998875531  112  223444456677


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCC-CHHhH-----HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh--HHHHHHHHHHHH
Q 006744          458 VESGDILEACECHNKIIEMSQVP-SVAAY-----NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT--EFKYALTILHVC  529 (632)
Q Consensus       458 ~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~~~~~~l~~~~~  529 (632)
                      ...|+.++|.+.+.......... ....+     ...+..+...|+.+.|...+..........+.  ...+..+..++.
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            88999999999998886431111 11111     11224455689999999998775432111111  111345667778


Q ss_pred             HcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          530 RSGEAEKIIEVLNEMTQE----GCPPN-EVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       530 ~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ..|++++|..++++....    |...+ ..++..+..++.+.|+.++|...+.+..+..-
T Consensus       703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            889999999999987754    32222 24566777888999999999999999988753

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.93  E-value=7.2e-06  Score=82.17  Aligned_cols=192  Identities=16%  Similarity=0.082  Sum_probs=123.0

Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHH
Q 006744          318 LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMA  397 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  397 (632)
                      +...|+++.|+.-|-+..         .....+.+.....+|.+|..+++.+.....  ....|..+..-|+..|+++.|
T Consensus       716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a  784 (1636)
T KOG3616|consen  716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA  784 (1636)
T ss_pred             HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence            344455555555543321         122345566677888999999988877653  345677788889999999999


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      +++|.+.        ..++-.|..|.+.|+++.|.++-++..  |.......|..-..-+-+.|++.+|.++|-.+-   
T Consensus       785 e~lf~e~--------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~---  851 (1636)
T KOG3616|consen  785 EELFTEA--------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG---  851 (1636)
T ss_pred             HHHHHhc--------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc---
Confidence            9998753        347778899999999999998877654  333444556665666777888888887775442   


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE  543 (632)
Q Consensus       478 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  543 (632)
                       .|+     ..|.+|-+.|..+..+++..+-..+    .-..|...+..-+-..|+...|.+.|-+
T Consensus       852 -~p~-----~aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  852 -EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             -Cch-----HHHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence             243     2356677777777777777653211    1112223344445555666666655543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.91  E-value=7.9e-06  Score=73.17  Aligned_cols=278  Identities=9%  Similarity=0.003  Sum_probs=164.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHH-HHHHHHhcCChhHHHHH
Q 006744          182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVT-LIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~  260 (632)
                      .++++|++++..-.++.. .+......|...|....++..|-+.|+++...  -|...-|.. -...+-+.+.+..|+.+
T Consensus        24 ~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A~i~ADALrV  100 (459)
T KOG4340|consen   24 ARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKACIYADALRV  100 (459)
T ss_pred             hhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            455556666655555432 26777888888889999999999999998765  466555543 24566777888999999


Q ss_pred             HHHHHHcCCcccHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744          261 FREMKENGILIDRAIYGVLIE--GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       261 ~~~m~~~~~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      ...|...   ++...-..-+.  .....+++..+..++++....|   +..+.+.......+.|++++|.+-|+...+-+
T Consensus       101 ~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvs  174 (459)
T KOG4340|consen  101 AFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVS  174 (459)
T ss_pred             HHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence            8877653   12111111122  2335677778888887776432   44455555556678899999999999888764


Q ss_pred             CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccH----------------------------HHHHHHHhhh
Q 006744          339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADL----------------------------EKFFEFLVGK  390 (632)
Q Consensus       339 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------------------~~~l~~~~~~  390 (632)
                      ---....|+..+ +..+.++++.|+++..++++.|+...+.+                            ++.-..++.+
T Consensus       175 GyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq  253 (459)
T KOG4340|consen  175 GYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQ  253 (459)
T ss_pred             CCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhh
Confidence            333456777655 44577889999999999888876421111                            1111112345


Q ss_pred             cccHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744          391 EERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE  468 (632)
Q Consensus       391 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  468 (632)
                      .|+.+.|.+.+..|..+...  |+.+...+.-.- ..+++.+..+-+.-+...+ +--..||..++-.||+..-++.|-.
T Consensus       254 ~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAAD  331 (459)
T KOG4340|consen  254 LRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAAD  331 (459)
T ss_pred             cccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHH
Confidence            56666666666555543332  333333322111 1233333333333333332 2234556666666666666666555


Q ss_pred             HHH
Q 006744          469 CHN  471 (632)
Q Consensus       469 ~~~  471 (632)
                      ++.
T Consensus       332 vLA  334 (459)
T KOG4340|consen  332 VLA  334 (459)
T ss_pred             HHh
Confidence            554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.84  E-value=0.00015  Score=70.82  Aligned_cols=133  Identities=11%  Similarity=0.159  Sum_probs=80.8

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL  279 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  279 (632)
                      +-|+.+|+.||+-+... .++++.+.++++... .+-....|..-|..-.+.++++....+|.+....-+  +...|...
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lY   92 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLY   92 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHH
Confidence            34788899988866555 888999999988754 233557788888888888899999999988876533  45555555


Q ss_pred             HHHHHh-cCCHH----HHHHHHHHHH-HCCCCC-CHhhHHHHHHH---------HHccCCHHHHHHHHHHHHh
Q 006744          280 IEGLVG-EGKVG----KACDLLKDLV-DSGYRA-DLGIYNSIIGG---------LCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       280 i~~~~~-~g~~~----~a~~~~~~m~-~~g~~~-~~~~~~~li~~---------~~~~g~~~~A~~~~~~m~~  336 (632)
                      ++---+ .|+..    ...+.|+-.. +.|+.+ +...|+..+.-         |..+.+++...++|+++..
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~  165 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV  165 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence            543322 22222    2233333333 234322 22345544432         3334456666677776654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.84  E-value=5.4e-07  Score=85.04  Aligned_cols=80  Identities=18%  Similarity=0.229  Sum_probs=31.4

Q ss_pred             ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHH
Q 006744          427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLV  505 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~  505 (632)
                      .+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+..+... -+..+...++.+....|+. +.+.+++
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            344444455444332 233444444444444444444444444444433221 1233333344444444443 3333444


Q ss_pred             HHH
Q 006744          506 RDC  508 (632)
Q Consensus       506 ~~~  508 (632)
                      .++
T Consensus       260 ~qL  262 (290)
T PF04733_consen  260 SQL  262 (290)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.81  E-value=1.8e-07  Score=88.20  Aligned_cols=150  Identities=19%  Similarity=0.162  Sum_probs=87.5

Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHH----Hhhhcc
Q 006744          317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEF----LVGKEE  392 (632)
Q Consensus       317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g  392 (632)
                      .+...|++++|++++...      .+.......+..+.+.++++.|.+.++.|.+.+-   ..+...+..    ++...+
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e---D~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE---DSILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC---CHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---cHHHHHHHHHHHHHHhCch
Confidence            344455555555555421      1333444455555566666666666655554321   122222222    222234


Q ss_pred             cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 006744          393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDI-LEACECHN  471 (632)
Q Consensus       393 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~-~~a~~~~~  471 (632)
                      .+.+|..+|+++.+....++.+.|.+..++...|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+++.
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            57777777777776655577778888888888888888888888877654 34556667777777777777 66777777


Q ss_pred             HHHHC
Q 006744          472 KIIEM  476 (632)
Q Consensus       472 ~~~~~  476 (632)
                      ++...
T Consensus       261 qL~~~  265 (290)
T PF04733_consen  261 QLKQS  265 (290)
T ss_dssp             HCHHH
T ss_pred             HHHHh
Confidence            77654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=4.8e-05  Score=74.14  Aligned_cols=381  Identities=16%  Similarity=0.128  Sum_probs=230.5

Q ss_pred             HHHHhCCChhHHhHHHHHHH------------------hcCCHHHHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChh
Q 006744          160 YCLSRNNLFRAADQVPELMD------------------SQGRIAEMLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLD  220 (632)
Q Consensus       160 ~~~~~~~~~~~a~~l~~~~~------------------~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~  220 (632)
                      ++....|+++.|..+|...+                  +.|++++|+.--.+-++.  .|+ ...|.-...++.-.|+++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence            45567899999999998765                  346777777766666553  455 567899999999999999


Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH------HHHHHc---CCcccHHhHHHHHHHHHhc-----
Q 006744          221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF------REMKEN---GILIDRAIYGVLIEGLVGE-----  286 (632)
Q Consensus       221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~------~~m~~~---~~~p~~~~~~~li~~~~~~-----  286 (632)
                      +|+.-|.+-++.. +-|...++.+.+++....   ++.+.|      ..+...   ........|..++..+-+.     
T Consensus        88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~---~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~  163 (539)
T KOG0548|consen   88 EAILAYSEGLEKD-PSNKQLKTGLAQAYLEDY---AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK  163 (539)
T ss_pred             HHHHHHHHHhhcC-CchHHHHHhHHHhhhHHH---HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence            9999999988764 345677777777772110   111111      111000   0000111233333222111     


Q ss_pred             -----CCHHHHHHHHHHH-----HHCC-------CCC----------------------CHhhHHHHHHHHHccCCHHHH
Q 006744          287 -----GKVGKACDLLKDL-----VDSG-------YRA----------------------DLGIYNSIIGGLCRVKQFDKA  327 (632)
Q Consensus       287 -----g~~~~a~~~~~~m-----~~~g-------~~~----------------------~~~~~~~li~~~~~~g~~~~A  327 (632)
                           ..+..+...+...     ...|       ..|                      -..-...+.++..+..+++.|
T Consensus       164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence                 1111111111110     0000       111                      012244567777888899999


Q ss_pred             HHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc---H---HHHHHHHhhhcccHHHHHHHH
Q 006744          328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD---L---EKFFEFLVGKEERIMMALDVF  401 (632)
Q Consensus       328 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~---~~~l~~~~~~~g~~~~a~~~~  401 (632)
                      ++-+....+..  -+..-++....+|...|.+..+...-....+.|...-..   +   ...+...|.+.++++.+...|
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            99998888765  345555666678889998888877777766665431111   1   111333577788899999999


Q ss_pred             HHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 006744          402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAIQCHVESGDILEACECHNKIIEMSQVP  480 (632)
Q Consensus       402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p  480 (632)
                      .+.......        -....+....+++....+...-.  .|+.. -...-...+.+.|++..|...|.++++.. +-
T Consensus       322 ~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~  390 (539)
T KOG0548|consen  322 QKALTEHRT--------PDLLSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PE  390 (539)
T ss_pred             HHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-Cc
Confidence            886544221        11222334445555555544432  33331 12222556788999999999999999876 44


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006744          481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI  559 (632)
Q Consensus       481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  559 (632)
                      |...|....-+|.+.|.+..|++-.+..++.   .|+ ...|.-=..++....++++|++.|++..+..  |+..-+..-
T Consensus       391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL---~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~  465 (539)
T KOG0548|consen  391 DARLYSNRAACYLKLGEYPEALKDAKKCIEL---DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDG  465 (539)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHH
Confidence            6888999999999999999999988887765   333 2334333444445578999999999998874  444433333


Q ss_pred             HHHHH
Q 006744          560 ISGMC  564 (632)
Q Consensus       560 ~~~~~  564 (632)
                      +.-|.
T Consensus       466 ~~rc~  470 (539)
T KOG0548|consen  466 YRRCV  470 (539)
T ss_pred             HHHHH
Confidence            33333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.80  E-value=1.3e-06  Score=85.50  Aligned_cols=223  Identities=12%  Similarity=0.087  Sum_probs=146.7

Q ss_pred             HHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 006744          247 GLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK  326 (632)
Q Consensus       247 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  326 (632)
                      -+.+.|++.+|.-.|+..++.++. +...|..|.......++-..|+..+++..+..+. +....-.|.-.|...|.-.+
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence            346678888888888888877665 7778888888888888888888888888887655 66777777788888888888


Q ss_pred             HHHHHHHHHhCCCC-----C---CHhcHHHHHHHHHhcCChhHHHHHHHHH-HHCCCCccccHHHHHHHHhhhcccHHHH
Q 006744          327 AYKLFEVTVQDDLA-----P---DFSTVNPLLVCCAEMGRMDNFFKLLAQM-EKLKFSVAADLEKFFEFLVGKEERIMMA  397 (632)
Q Consensus       327 A~~~~~~m~~~~~~-----p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a  397 (632)
                      |++.++.......+     +   +...-..  ..+.....+....++|-++ ...+..+++.+...|..+|--.|++++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            88888776543211     0   0000000  0111111223334444333 3344446777777777777777777777


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          398 LDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      ...|+......+.|...||.|...++...+.++|+.-|.+..+  ++|+.+ ....|.-.|...|.+++|.+.|-.++.
T Consensus       450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            7777777777777777777777777777777777777777776  455533 333344466777777777766655543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=6.5e-06  Score=83.58  Aligned_cols=335  Identities=12%  Similarity=0.101  Sum_probs=196.3

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-C-------C-CcCHHhHHHHHHHHHh
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-L-------V-EADVMAYVTLIMGLCK  250 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-------~-~p~~~~~~~li~~~~~  250 (632)
                      ..|+.+.|.+-.+-+      .+...|..|.+.|.+.++++-|.-.+-.|... |       . .++ .+-.-+.-....
T Consensus       740 tiG~MD~AfksI~~I------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie  812 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFI------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE  812 (1416)
T ss_pred             EeccHHHHHHHHHHH------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence            457777777666554      26677888888888888888777777666432 1       0 121 222223333456


Q ss_pred             cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006744          251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKL  330 (632)
Q Consensus       251 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~  330 (632)
                      .|.+++|+.+|++.++.         ..|=..|-..|.+++|.++-+.=-.-.+   ..||..-...+-..++.+.|+++
T Consensus       813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHH
Confidence            67777777777776653         3344556667777777776654322211   23444455555566777777777


Q ss_pred             HHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC
Q 006744          331 FEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS  410 (632)
Q Consensus       331 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  410 (632)
                      |++....    --..+. ++.     .+....+++.+.+      .+..++.+....+...|+++.|+.+|...++    
T Consensus       881 yEK~~~h----afev~r-mL~-----e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----  940 (1416)
T KOG3617|consen  881 YEKAGVH----AFEVFR-MLK-----EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD----  940 (1416)
T ss_pred             HHhcCCh----HHHHHH-HHH-----hChHHHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence            7754211    111111 111     1222222222322      2456777777777888999999999987654    


Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                          |-.++...|-+|+.++|-++-++-      -|......+.+.|...|++.+|..+|.+...         +...|+
T Consensus       941 ----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIR 1001 (1416)
T KOG3617|consen  941 ----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIR 1001 (1416)
T ss_pred             ----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHH
Confidence                778888889999999998887643      3566677788889999999999998877653         222222


Q ss_pred             HHH-------------hc--CCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH--------HH--
Q 006744          491 GLC-------------KI--GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE--------MT--  545 (632)
Q Consensus       491 ~~~-------------~~--g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~--------m~--  545 (632)
                      .|-             ..  .+.-.|-++|++.-    .     .+...+..|-+.|.+.+|+++-=+        ++  
T Consensus      1002 lcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 1002 LCKENDMKDRLANLALMSGGSDLVSAARYYEELG----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred             HHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcc----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence            221             11  22333444554421    0     011233445566666666654211        11  


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      +..-..|+...+.-.+-++...++++|..++-..++
T Consensus      1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~ 1108 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE 1108 (1416)
T ss_pred             hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            112234666777777777777788888777765543

>PLN02789 farnesyltranstransferase

Probab=98.79  E-value=7.8e-06  Score=78.30  Aligned_cols=202  Identities=12%  Similarity=-0.035  Sum_probs=128.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh--hHHH
Q 006744          182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER-NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV--VRGH  258 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~  258 (632)
                      ++.++|+.+.+++.+.... +..+|+..-..+...| +++++++.++++.+.+ +-+..+|+.....+.+.|+.  ++++
T Consensus        51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~el  128 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKEL  128 (320)
T ss_pred             CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHHH
Confidence            3555666666666654322 4556776666666777 5788999988888764 34556677665555566653  6778


Q ss_pred             HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---CCH----HHHHHHH
Q 006744          259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV---KQF----DKAYKLF  331 (632)
Q Consensus       259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~----~~A~~~~  331 (632)
                      ++++++.+.+.. |..+|+...-++...|+++++++.++++++.++. |..+|+.....+.+.   |..    ++.+.+.
T Consensus       129 ~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~  206 (320)
T PLN02789        129 EFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYT  206 (320)
T ss_pred             HHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence            888888887665 7788888888888888899999999998887765 677777766555444   222    4566666


Q ss_pred             HHHHhCCCCCCHhcHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCccccHHHHHHHHhh
Q 006744          332 EVTVQDDLAPDFSTVNPLLVCCAEM----GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG  389 (632)
Q Consensus       332 ~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (632)
                      .++...... |...|+.+...+...    +...+|...+.+..+.++. +......++..|+
T Consensus       207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~  266 (320)
T PLN02789        207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLC  266 (320)
T ss_pred             HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHH
Confidence            566654332 556666666665552    2334455555555443322 3344555555554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=0.00032  Score=73.40  Aligned_cols=398  Identities=15%  Similarity=0.155  Sum_probs=248.7

Q ss_pred             CCChHHHHHHHhcCCChhHHHHHHHHhhhc-CCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC------------
Q 006744          116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQ-KGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQG------------  182 (632)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g------------  182 (632)
                      +.++++-..||...+-++.  ++.++.... ..-..|+...+..+.++...+...+-+++++.+.-..            
T Consensus       949 R~D~~LW~~VL~e~n~~rR--qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnL 1026 (1666)
T KOG0985|consen  949 RSDPDLWAKVLNEENPYRR--QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNL 1026 (1666)
T ss_pred             ccChHHHHHHHhccChHHH--HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhh
Confidence            4455566666655543322  222222211 1113455566667888888888888888887766322            


Q ss_pred             --------CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh
Q 006744          183 --------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV  254 (632)
Q Consensus       183 --------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  254 (632)
                              +..+..+..+++-.... |      .+...+..++-+++|..+|++..     .+..+.+.||.-   -+.+
T Consensus      1027 LiLtAikad~trVm~YI~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~l 1091 (1666)
T KOG0985|consen 1027 LILTAIKADRTRVMEYINRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSL 1091 (1666)
T ss_pred             HHHHHhhcChHHHHHHHHHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhH
Confidence                    22333333333332211 1      23344556677788888887653     455555555542   2566


Q ss_pred             hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006744          255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVT  334 (632)
Q Consensus       255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  334 (632)
                      ++|.+.-++..      ...+|..+..+-.+.|.+.+|++-|-+..      |...|..+++...+.|.+++-.+++...
T Consensus      1092 dRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1092 DRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred             HHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            67766655432      45678888888888888888888775432      6677888899999999999999888877


Q ss_pred             HhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhH
Q 006744          335 VQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI  414 (632)
Q Consensus       335 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  414 (632)
                      .+....|...  +.++-+|++.++..+.++++.       .|+..-...+..-|...|.++.|.-+|..        +.-
T Consensus      1160 Rkk~~E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN 1222 (1666)
T KOG0985|consen 1160 RKKVREPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSN 1222 (1666)
T ss_pred             HHhhcCccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhh
Confidence            7766666544  467788888888776655542       24455555566667777888888777764        344


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK  494 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  494 (632)
                      |..|...+...|++..|...-++.      .+..||-.+-.+|...+.+..|.     |-...+.....-..-|+..|-.
T Consensus      1223 ~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~ 1291 (1666)
T KOG0985|consen 1223 FAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQD 1291 (1666)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHh
Confidence            888889999999998887655433      35678888888888777665442     2222333445567788999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcC
Q 006744          495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCP------PNEVICSAIISGMCKHG  567 (632)
Q Consensus       495 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~------p~~~~~~~l~~~~~~~g  567 (632)
                      .|-+++-+.+++..+..  .....-.|+-|...|.+- ++++..+.++-.-.+ +++      .....|..++-.|.+-.
T Consensus      1292 rGyFeElIsl~Ea~LGL--ERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~ 1368 (1666)
T KOG0985|consen 1292 RGYFEELISLLEAGLGL--ERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYE 1368 (1666)
T ss_pred             cCcHHHHHHHHHhhhch--hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999875532  112333466566666554 333333333322211 111      12446777777777777


Q ss_pred             CHHHHH
Q 006744          568 TLEEAR  573 (632)
Q Consensus       568 ~~~~A~  573 (632)
                      .++.|.
T Consensus      1369 eyDNAa 1374 (1666)
T KOG0985|consen 1369 EYDNAA 1374 (1666)
T ss_pred             hhhHHH
Confidence            777664

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.78  E-value=1.9e-06  Score=76.96  Aligned_cols=334  Identities=13%  Similarity=0.079  Sum_probs=212.4

Q ss_pred             CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744          233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN  312 (632)
Q Consensus       233 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  312 (632)
                      |+....--+.+++..+.+..+++.|++++..-.+...+ +....+.|..+|....++..|-..++++-...  |...-|.
T Consensus         5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYr   81 (459)
T KOG4340|consen    5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYR   81 (459)
T ss_pred             cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHH
Confidence            33333445677888889999999999999988887554 77788899999999999999999999998753  4444443


Q ss_pred             H-HHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhh
Q 006744          313 S-IIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC--CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG  389 (632)
Q Consensus       313 ~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  389 (632)
                      . -...+.+.+.+.+|+.+...|...   ++...-..-+.+  ....+++..+..++++.-..+   +.....-..-...
T Consensus        82 lY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gClly  155 (459)
T KOG4340|consen   82 LYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLY  155 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheee
Confidence            2 245677889999999999888753   222221112222  235677888888877765322   2333333334456


Q ss_pred             hcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-------------cCHH-------
Q 006744          390 KEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE-------------VNSL-------  448 (632)
Q Consensus       390 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------------p~~~-------  448 (632)
                      +.|+++.|.+-|....+-+.- +...||..+.. .+.|+++.|+++..++++.|++             ||..       
T Consensus       156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~  234 (459)
T KOG4340|consen  156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV  234 (459)
T ss_pred             ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence            899999999999988775544 67778766554 4678899999999999988764             2211       


Q ss_pred             -HHHHHHH-------HHHHcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHH
Q 006744          449 -SFSIAIQ-------CHVESGDILEACECHNKIIEM-SQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF  519 (632)
Q Consensus       449 -t~~~ll~-------~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~  519 (632)
                       .-+.++.       .+.+.|+.+.|.+.+..|--. ....|+.|...+.-. ...|++.+..+-++-+++..+  -...
T Consensus       235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP--fP~E  311 (459)
T KOG4340|consen  235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP--FPPE  311 (459)
T ss_pred             HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC--CChH
Confidence             1122222       245667888887777766522 223455555433221 123444444444444454433  2345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 006744          520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCP-PNEVICSAIISGMCK-HGTLEEARKVFTNLR  580 (632)
Q Consensus       520 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~  580 (632)
                      ||..++..||++.-++.|.+++.+-....++ .+...| .|++++.- .-..++|.+-++.+.
T Consensus       312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            6777888888888888888887663332211 223333 34444443 455667766665553

>PLN02789 farnesyltranstransferase

Probab=98.77  E-value=1.1e-05  Score=77.17  Aligned_cols=145  Identities=8%  Similarity=0.042  Sum_probs=108.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-RVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      ..+-..+...+..++|+.+++++++.. +-+..+|+..-.++...| ++++++..++++.+.+.+ +..+|+.....+.+
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~  118 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHH
Confidence            334444556788999999999998764 234456766666667777 679999999999987665 66677766656666


Q ss_pred             cCC--HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh
Q 006744          286 EGK--VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE  355 (632)
Q Consensus       286 ~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  355 (632)
                      .|.  .++++.+++++.+...+ +..+|+...-++.+.|+++++++.++++.+.+.. |...|+.....+.+
T Consensus       119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~  188 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITR  188 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHh
Confidence            665  36788899899987765 8889999999999999999999999999987755 55566555444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.77  E-value=9e-05  Score=74.63  Aligned_cols=50  Identities=10%  Similarity=0.009  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      |-..+..-+...|++..|.+-|-+.-+         |.+-+++|-..+.|++|.++-+.
T Consensus       884 t~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt  933 (1636)
T KOG3616|consen  884 THKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT  933 (1636)
T ss_pred             HHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc
Confidence            344455556667777777766654432         55666777777777777776653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.76  E-value=0.0001  Score=67.67  Aligned_cols=313  Identities=11%  Similarity=0.057  Sum_probs=163.0

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHH---HHHHHhcCChhHHHHHHHHHHHcCCcccHHh-HHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL---IMGLCKGGRVVRGHELFREMKENGILIDRAI-YGV  278 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~  278 (632)
                      +.-.--+...+...|++..|+.-|....+.    |...|.++   ...|...|+-..|+.=+....+.  +||-.. -..
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQ  111 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQ  111 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHH
Confidence            333444555666666666666666666543    22233322   34455566666666666666553  333221 111


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744          279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  358 (632)
                      -...+.+.|.+++|..=|+.+.+....-+.     ...++.+.-..++-..                ....+..+...|+
T Consensus       112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~-----~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD  170 (504)
T KOG0624|consen  112 RGVVLLKQGELEQAEADFDQVLQHEPSNGL-----VLEAQSKLALIQEHWV----------------LVQQLKSASGSGD  170 (504)
T ss_pred             hchhhhhcccHHHHHHHHHHHHhcCCCcch-----hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCc
Confidence            223455666666666666666654321110     0111111111111111                1112223334455


Q ss_pred             hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744          359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM  438 (632)
Q Consensus       359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  438 (632)
                      ...|+..+..+++.. +.+..++..-..+|...|++..|+.-++...+....++..+--+-..+...|+.+.++...++.
T Consensus       171 ~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iREC  249 (504)
T KOG0624|consen  171 CQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIREC  249 (504)
T ss_pred             hhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            555555555555532 2355555555566666666666666555555554445555555556666666666666666665


Q ss_pred             hhCCCCcCHHHHHH----H---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---hHHHHHHHHHhcCCHHHHH
Q 006744          439 RGLNLEVNSLSFSI----A---------IQCHVESGDILEACECHNKIIEMSQVPSVA---AYNCLTKGLCKIGEIDAAM  502 (632)
Q Consensus       439 ~~~~~~p~~~t~~~----l---------l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~g~~~~A~  502 (632)
                      .+  +.||...+-.    +         +......+++.++.+-.+...+....-...   .+..+-.++...|++.+|+
T Consensus       250 LK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi  327 (504)
T KOG0624|consen  250 LK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI  327 (504)
T ss_pred             Hc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence            54  3444432111    1         112234556666666666666654331222   2334455666777788888


Q ss_pred             HHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          503 MLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       503 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                      +...++++.   .|+ +.++.--..+|.-...++.|+.-|+.+.+.+
T Consensus       328 qqC~evL~~---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  328 QQCKEVLDI---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHHhc---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            877777643   343 5566666677777777778877777777664

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.73  E-value=5e-05  Score=69.61  Aligned_cols=298  Identities=15%  Similarity=0.098  Sum_probs=184.8

Q ss_pred             hcCCChhHHHHHHHHhhhcCCCCCCHHHHHHH---HHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCH
Q 006744          127 KVENNPTLASKFFHWAGKQKGYKHNFASYNAL---AYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDV  203 (632)
Q Consensus       127 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~  203 (632)
                      -..++...|+..||.+..     -|+..|.++   ...|...|+-..|..=+....+                  .+||-
T Consensus        49 la~~Q~sDALt~yHaAve-----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle------------------lKpDF  105 (504)
T KOG0624|consen   49 LARGQLSDALTHYHAAVE-----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE------------------LKPDF  105 (504)
T ss_pred             HHhhhHHHHHHHHHHHHc-----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh------------------cCccH
Confidence            345577888999988754     344444443   4556666655555444433332                  34554


Q ss_pred             Hh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHH----------------hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          204 FA-YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVM----------------AYVTLIMGLCKGGRVVRGHELFREMKE  266 (632)
Q Consensus       204 ~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~  266 (632)
                      .. --.-...+.+.|.+++|..=|+.+++..  |+..                .....+..+...|+...|++....+.+
T Consensus       106 ~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  106 MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence            32 1222345778999999999999988763  3211                112234455667888888888888888


Q ss_pred             cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcH
Q 006744          267 NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTV  346 (632)
Q Consensus       267 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  346 (632)
                      ..+- |...|..-..+|...|++..|+.=++...+..-. +...+..+-..+...|+.+.++...++.++.  .||...+
T Consensus       184 i~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C  259 (504)
T KOG0624|consen  184 IQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC  259 (504)
T ss_pred             cCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence            6544 7778888888888888888888777766655433 4555556677778888888888888887754  4444322


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-C---hhHHHHHHHHH
Q 006744          347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-S---VPIYNILMGAL  422 (632)
Q Consensus       347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~---~~~~~~li~~~  422 (632)
                      ...   |   ..+.+..+.++.|.+                ....+++.++.+..+.+.+..+. .   ...+..+-.++
T Consensus       260 f~~---Y---KklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~  317 (504)
T KOG0624|consen  260 FPF---Y---KKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY  317 (504)
T ss_pred             HHH---H---HHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence            111   1   111222222222222                23346666677777766665544 2   22344455666


Q ss_pred             HhcCChhhHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          423 LEIGEVKKALYLFGKMRGLNLEVN-SLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       423 ~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      ...|++.+|++.-.+..+.  .|| ..++.--..+|.-...++.|+.-|+...+.+
T Consensus       318 ~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  318 REDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             cccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            6677777787777777663  343 6677777777777777888888887777654

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.71  E-value=0.00022  Score=74.59  Aligned_cols=437  Identities=12%  Similarity=0.020  Sum_probs=223.4

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHH--------------------h
Q 006744          121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMD--------------------S  180 (632)
Q Consensus       121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~--------------------~  180 (632)
                      .+..+++...+...|.+.|+.+..-.  .-+...+..+...|++...++.|..+.-...                    +
T Consensus       497 ~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe  574 (1238)
T KOG1127|consen  497 FLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE  574 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence            34455555556778888888775532  3456677888889999999988887733221                    2


Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHH--HHHHHhcCChhHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL--IMGLCKGGRVVRGH  258 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~g~~~~a~  258 (632)
                      .++..+|+.-|+...+..++ |...|..+..+|.+.|.+..|+++|.+....  .|+. +|...  ...-+..|.+.+|+
T Consensus       575 a~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkeal  650 (1238)
T KOG1127|consen  575 AHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEAL  650 (1238)
T ss_pred             ccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHHH
Confidence            34677778888777766443 7778888888888888888888888877654  3432 22222  22335668888888


Q ss_pred             HHHHHHHHc------CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCCHhhHHHHHHHHHccCCHH
Q 006744          259 ELFREMKEN------GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-------SGYRADLGIYNSIIGGLCRVKQFD  325 (632)
Q Consensus       259 ~~~~~m~~~------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~g~~~  325 (632)
                      ..+..+...      +..--..++-.+...+.-.|-..++.++++.-++       ....-+...|-.+-++        
T Consensus       651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda--------  722 (1238)
T KOG1127|consen  651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA--------  722 (1238)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH--------
Confidence            888776542      1111122333333333334444444444443332       1111122223222222        


Q ss_pred             HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh---h---HHHHHHHHHHHCCCCccccHHHHHHHHhh-----h--cc
Q 006744          326 KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM---D---NFFKLLAQMEKLKFSVAADLEKFFEFLVG-----K--EE  392 (632)
Q Consensus       326 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~--~g  392 (632)
                        ..+|-... .. .|+.....++..-.-..+..   |   .+.+.+-.-.+.-. .....++..+..|.     .  ..
T Consensus       723 --c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l~et~~  797 (1238)
T KOG1127|consen  723 --CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLLGETMK  797 (1238)
T ss_pred             --HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHcCCcch
Confidence              12222111 01 11211111111111111111   1   00011100000000 01122232222221     1  12


Q ss_pred             cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK  472 (632)
Q Consensus       393 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  472 (632)
                      +...|...+....+....+...||.|... ...|.+.-|.-.|-+-.... +-...+|..+.-.+.+..+++.|...|..
T Consensus       798 ~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~  875 (1238)
T KOG1127|consen  798 DACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSS  875 (1238)
T ss_pred             hHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHh
Confidence            23456666666666555567777777665 44566666666665544432 44556666666677777888888888877


Q ss_pred             HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH--Hhhc-CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 006744          473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD--CLGN-VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ---  546 (632)
Q Consensus       473 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~---  546 (632)
                      .....+ .+...|-.........|+.-++..+|..  .... .+..++...|-....-...+|+.++-+...+.+-.   
T Consensus       876 ~qSLdP-~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~  954 (1238)
T KOG1127|consen  876 VQSLDP-LNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL  954 (1238)
T ss_pred             hhhcCc-hhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence            765331 2344454444444566777777777765  2211 12223333333333333344555444443332221   


Q ss_pred             ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          547 ------EGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       547 ------~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                            .|.+.+...|...+...-+.+.+++|.+...++
T Consensus       955 al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  955 ALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             HHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence                  134555666777766666677776666665554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.71  E-value=3.7e-06  Score=82.41  Aligned_cols=224  Identities=13%  Similarity=0.067  Sum_probs=144.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChh
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD  360 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  360 (632)
                      .-+.+.|++.+|.-.|+..++..+. +...|-.|......+++-..|+..+++..+.+.. +......|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            3456889999999999999998766 8889999999999999999999999999876533 5666777778888889888


Q ss_pred             HHHHHHHHHHHCCCCccccHHH------HHHHHhhhcccHHHHHHHHHHHHhCCC--CChhHHHHHHHHHHhcCChhhHH
Q 006744          361 NFFKLLAQMEKLKFSVAADLEK------FFEFLVGKEERIMMALDVFEELKGKGY--SSVPIYNILMGALLEIGEVKKAL  432 (632)
Q Consensus       361 ~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~  432 (632)
                      .|...++.-+...++-......      ..-........+.+..++|-++.....  .+..+...|.-.|.-.|++++|.
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            9999998876654321000000      000011112223444455555444333  36666777777777777777777


Q ss_pred             HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       433 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      ..|+...... +-|...||.|...++...+.++|...|.+.++.  +|. +.+.--|.-.|...|.+++|.+.|-.++
T Consensus       451 Dcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  451 DCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            7777766632 334455666666666666677777777776663  343 2222334445666666776666665544

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.70  E-value=0.00042  Score=67.74  Aligned_cols=446  Identities=10%  Similarity=0.048  Sum_probs=252.1

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744          149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE  228 (632)
Q Consensus       149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  228 (632)
                      +-|..+|+.||+-+... ..+++++.++++                ... .+-....|..-|..-.+.++++....+|.+
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~----------------~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~R   78 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQL----------------VNV-FPSSPRAWKLYIERELASKDFESVEKLFSR   78 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHH----------------hcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            56889999999887766 565555555444                332 233567899999999999999999999998


Q ss_pred             HHhCCCCcCHHhHHHHHHHHHhc-CChhHH----HHHHHHH-HHcCCcc-cHHhHHHHHHH---------HHhcCCHHHH
Q 006744          229 MKKDLVEADVMAYVTLIMGLCKG-GRVVRG----HELFREM-KENGILI-DRAIYGVLIEG---------LVGEGKVGKA  292 (632)
Q Consensus       229 m~~~~~~p~~~~~~~li~~~~~~-g~~~~a----~~~~~~m-~~~~~~p-~~~~~~~li~~---------~~~~g~~~~a  292 (632)
                      .+..  ..+...|..-|.--.+. |+...+    .+.|+-. .+.|..+ +-..|+..+..         |....+++..
T Consensus        79 CLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~v  156 (656)
T KOG1914|consen   79 CLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAV  156 (656)
T ss_pred             HHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHH
Confidence            7765  34566666666544333 333332    2233332 3344332 22344444433         2334456777


Q ss_pred             HHHHHHHHHCCCCC------CHhhHHHHHHHHH-------ccCCHHHHHHHHHHHHh--CCCCCCHhc------------
Q 006744          293 CDLLKDLVDSGYRA------DLGIYNSIIGGLC-------RVKQFDKAYKLFEVTVQ--DDLAPDFST------------  345 (632)
Q Consensus       293 ~~~~~~m~~~g~~~------~~~~~~~li~~~~-------~~g~~~~A~~~~~~m~~--~~~~p~~~~------------  345 (632)
                      .++|+++...-+.-      |-..|..=|+...       +...+..|.++++++..  .|+.-+..+            
T Consensus       157 RriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~q  236 (656)
T KOG1914|consen  157 RRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQ  236 (656)
T ss_pred             HHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHH
Confidence            77888877542110      1122222222111       23456677777777653  343322222            


Q ss_pred             ---HHHHHHHHHhcCCh--------hHHHHHHHHH-HHCCCCccccH-----HHHHHHHhhhccc-------HHHHHHHH
Q 006744          346 ---VNPLLVCCAEMGRM--------DNFFKLLAQM-EKLKFSVAADL-----EKFFEFLVGKEER-------IMMALDVF  401 (632)
Q Consensus       346 ---~~~ll~~~~~~~~~--------~~a~~~~~~~-~~~~~~~~~~~-----~~~l~~~~~~~g~-------~~~a~~~~  401 (632)
                         |..+|.-=...+--        ....-.+++. .-.+..|+...     .......+...|+       -+++..++
T Consensus       237 v~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~y  316 (656)
T KOG1914|consen  237 VELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIY  316 (656)
T ss_pred             HHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHH
Confidence               22222211111100        0011111111 11122211111     0011112222333       33455555


Q ss_pred             HHHHhCCCC-ChhHHHHHHHHHHhc---CChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          402 EELKGKGYS-SVPIYNILMGALLEI---GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       402 ~~~~~~~~~-~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      +...+.-.. +...|..+.+.--..   .+.+....+++++...-..--..+|...++...+...+..|..+|.++.+.+
T Consensus       317 Er~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~  396 (656)
T KOG1914|consen  317 ERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK  396 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc
Confidence            544332211 222333332211111   1355566667666654322234578888888889999999999999999987


Q ss_pred             CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HH
Q 006744          478 QVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN--EV  554 (632)
Q Consensus       478 ~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~  554 (632)
                      ..+ ++.++++++..||. ++.+-|.++|+--+...+..|.  --...++-+...++-..+..+|++....++.++  ..
T Consensus       397 r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~--yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~  473 (656)
T KOG1914|consen  397 RTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPE--YVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKE  473 (656)
T ss_pred             CCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHH
Confidence            777 78888999998775 6889999999987766554443  223456667788999999999999998866655  46


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCCChhhHHHHHHHHhhhchhHHHHhhhhhhchh
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRERKL---LTEANTIVYDEILIEHMKKKTADLVLSGLKFFGLE  619 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~~~~  619 (632)
                      +|..+++-=..-|++..+.++-+++...=.   .+.  .-.-..++.-++-.+....-...+++.|..
T Consensus       474 Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~--~~~~~~~v~RY~~~d~~~c~~~elk~l~~~  539 (656)
T KOG1914|consen  474 IWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYE--GNETALFVDRYGILDLYPCSLDELKFLGYK  539 (656)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCC--CChHHHHHHHHhhcccccccHHHHHhhhHH
Confidence            899999988999999999999888765421   111  111223344455555555555556655555

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.70  E-value=4.8e-06  Score=83.78  Aligned_cols=234  Identities=13%  Similarity=0.064  Sum_probs=186.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHH
Q 006744          275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCA  354 (632)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~  354 (632)
                      .-..+...+.+.|-...|..+|+++.         .|..+|.+|+..|+..+|..+..+..+  -.||...|..+.+...
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc
Confidence            34567788899999999999998764         577889999999999999999988877  3678888888888877


Q ss_pred             hcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHH
Q 006744          355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYL  434 (632)
Q Consensus       355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  434 (632)
                      ...-+++|.++.++....       ....+.......++++++.+.|+.-.+.++-...+|-.+..+..+.++++.|.+.
T Consensus       469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH
Confidence            777788888888765432       1122222234479999999999999888877888999999999999999999999


Q ss_pred             HHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 006744          435 FGKMRGLNLEVN-SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA  513 (632)
Q Consensus       435 ~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  513 (632)
                      |......  .|| ...|+.+-.+|.+.++..+|...+++..+.+ .-+..+|...+....+.|.+++|++.+.++.....
T Consensus       542 F~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~  618 (777)
T KOG1128|consen  542 FHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK  618 (777)
T ss_pred             HHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence            9988874  555 5679999999999999999999999999987 44566777777888999999999999999876544


Q ss_pred             CCChHHHHHHHHHHHH
Q 006744          514 SGPTEFKYALTILHVC  529 (632)
Q Consensus       514 ~~p~~~~~~~l~~~~~  529 (632)
                      ...|......++....
T Consensus       619 ~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  619 KYKDDEVLLIIVRTVL  634 (777)
T ss_pred             hcccchhhHHHHHHHH
Confidence            4445444444444443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.69  E-value=7.6e-06  Score=87.92  Aligned_cols=215  Identities=14%  Similarity=0.064  Sum_probs=167.8

Q ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHhC-CCC----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006744          381 EKFFEFLVGKEERIMMALDVFEELKGK-GYS----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ  455 (632)
Q Consensus       381 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  455 (632)
                      +-.++......++++.|++++++.... ++.    -..+|.++++.-...|.-+...++|+++.+.  .-....|..|..
T Consensus      1461 WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1461 WIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHLKLLG 1538 (1710)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHHHHHH
Confidence            333444456677888888888876543 111    3457888888888888888999999999874  233556888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHH
Q 006744          456 CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAE  535 (632)
Q Consensus       456 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  535 (632)
                      .|.+.+..++|.++++.|.+.- .-....|...+..+.+..+-++|..++++++...+..--.....-.+..-.+.|+.+
T Consensus      1539 iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDae 1617 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAE 1617 (1710)
T ss_pred             HHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCch
Confidence            9999999999999999999853 356788999999999999999999999999876443223333444555566889999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHH
Q 006744          536 KIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIE  599 (632)
Q Consensus       536 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~  599 (632)
                      .+..+|+..... .+.....|+.+++.-.++|+.+.++.+|++....++.+.---..|..-+..
T Consensus      1618 RGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1618 RGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred             hhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence            999999999887 466788999999999999999999999999999999875555555554443

>PF12854 PPR_1: PPR repeat

Probab=98.69  E-value=2.4e-08  Score=59.46  Aligned_cols=32  Identities=28%  Similarity=0.642  Sum_probs=20.4

Q ss_pred             CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          198 LCKPDVFAYTAMIRVLAAERNLDACLRVWEEM  229 (632)
Q Consensus       198 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  229 (632)
                      |+.||..+||+||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666665

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.64  E-value=1.8e-05  Score=85.13  Aligned_cols=207  Identities=10%  Similarity=0.048  Sum_probs=158.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-CCcc---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKEN-GILI---DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN  312 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  312 (632)
                      ....|-..|......+++++|.+++++.... ++.-   -...|.++++.-...|.-+...++|+++.+..  -....|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            4556777777788888888888888887653 1111   12367777777777788888888888887751  1345678


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-ccccHHHHHHHHhhhc
Q 006744          313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS-VAADLEKFFEFLVGKE  391 (632)
Q Consensus       313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  391 (632)
                      .|...|.+.+.+++|.++|+.|.+.-- -....|...+..+.+.++-+.|..++.+.++.-.. -...+..-.+.+-.+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            888888888999999999998887522 35567888888888888888888888888775432 1233455556666788


Q ss_pred             ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC
Q 006744          392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN  446 (632)
Q Consensus       392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  446 (632)
                      |+.+.+..+|+......+.-...|+..|+.-.++|+.+.+..+|++....++.|-
T Consensus      1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred             CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence            9999999999999888877788899999999999999999999999998876654

>PF12854 PPR_1: PPR repeat

Probab=98.64  E-value=4.5e-08  Score=58.34  Aligned_cols=33  Identities=36%  Similarity=0.878  Sum_probs=25.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          548 GCPPNEVICSAIISGMCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       548 g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  580 (632)
                      |+.||..||+.||.+|++.|++++|.++|++|.
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            677777777778777778888877777777763

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.57  E-value=1.2e-05  Score=74.76  Aligned_cols=181  Identities=14%  Similarity=0.045  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH----HHHH
Q 006744          380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSV---PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL----SFSI  452 (632)
Q Consensus       380 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~  452 (632)
                      ........+...|++++|...|+++....+.+.   .++..+..++...|++++|...++++.+..  |+..    ++..
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~  112 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHHHHHH
Confidence            344444445566666666666666665544322   345556666666666666666666665532  2111    2333


Q ss_pred             HHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHH
Q 006744          453 AIQCHVES--------GDILEACECHNKIIEMSQVPSV-AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL  523 (632)
Q Consensus       453 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~  523 (632)
                      +..++...        |+.++|.+.++.+.+..  |+. ..+..+.....    .....   .            .....
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~---~------------~~~~~  171 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL---A------------GKELY  171 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH---H------------HHHHH
Confidence            33333332        45555666666655532  221 11111111000    00000   0            00113


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          524 TILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       524 l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      +...+.+.|++++|+..+++..+..  -+.....+..++.++.+.|++++|..+++.+....
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            5566788899999999999988762  12235688899999999999999999998887653

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.55  E-value=0.00059  Score=71.59  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE  543 (632)
Q Consensus       464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  543 (632)
                      ..|...+.+.++.. ..+..+|+.|.-. ...|++.-|.-.|-+....  ......+|..+...+....+++-|...|..
T Consensus       800 ~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s--ep~~~~~W~NlgvL~l~n~d~E~A~~af~~  875 (1238)
T KOG1127|consen  800 CTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS--EPTCHCQWLNLGVLVLENQDFEHAEPAFSS  875 (1238)
T ss_pred             HHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc--cccchhheeccceeEEecccHHHhhHHHHh
Confidence            45666666666532 2345556655443 5556666666655443322  223445566666666777788888888877


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTN  578 (632)
Q Consensus       544 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  578 (632)
                      .+... +.|...|-.........|+.-++..+|..
T Consensus       876 ~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  876 VQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             hhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            77663 55666666655555566777777777766

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.55  E-value=2.8e-05  Score=83.04  Aligned_cols=57  Identities=18%  Similarity=0.070  Sum_probs=28.1

Q ss_pred             HHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 006744          382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR  439 (632)
Q Consensus       382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  439 (632)
                      ..+..+|.+.|+.++|..+++++.+.++.++.+.|.+...|... ++++|.+++.+..
T Consensus       120 ~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        120 RTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            33444444444444444444444444444555555555555555 5555555554443

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.54  E-value=1.3e-05  Score=71.14  Aligned_cols=132  Identities=17%  Similarity=0.061  Sum_probs=110.0

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .|....+.++....+.|++..|+..|++..... ++|...|+.+.-+|.+.|++++|..-|.+..+.... +...++.|.
T Consensus        98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlg  175 (257)
T COG5010          98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLG  175 (257)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHH
Confidence            356667778888899999999999999988764 678899999999999999999999999998886444 677888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  335 (632)
                      ..|.-.|+.+.|..++......+.. |..+-..+.......|++++|.++...-.
T Consensus       176 ms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         176 MSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            8888899999999999888877654 67777788888889999999988876544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.51  E-value=2.5e-05  Score=69.59  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=88.8

Q ss_pred             cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHH-HHcCC--HHHHH
Q 006744          391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH-VESGD--ILEAC  467 (632)
Q Consensus       391 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~g~--~~~a~  467 (632)
                      .++.+++...++.....++.+...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+  .++|.
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            4666777777888777777788888888888888888888888888888754 33555566666653 56666  47888


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006744          468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV  512 (632)
Q Consensus       468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  512 (632)
                      +++++..+... -+...+..+...+...|++++|+..|+++++..
T Consensus       131 ~~l~~al~~dP-~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        131 EMIDKALALDA-NEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHhCC-CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            88888887653 256677777777788888888888888877653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.48  E-value=3.8e-05  Score=68.42  Aligned_cols=118  Identities=8%  Similarity=0.088  Sum_probs=56.6

Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH-HhcCC--HHHH
Q 006744          216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL-VGEGK--VGKA  292 (632)
Q Consensus       216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~--~~~a  292 (632)
                      .++.+++...++...+.+ +.|...|..+...|...|++++|...|++..+.... +..++..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            334444444444444332 334445555555555555555555555555544332 444444444432 34444  2555


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      .+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555554433 444455555555555555555555555544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.48  E-value=2.7e-05  Score=72.41  Aligned_cols=186  Identities=11%  Similarity=-0.003  Sum_probs=133.6

Q ss_pred             CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh---HHH
Q 006744          342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV--AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP---IYN  416 (632)
Q Consensus       342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~  416 (632)
                      ....+..+...+...|+++.|...++++.+.....  .......+..++...|++++|...++++.+..+.+..   ++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            45567778888999999999999999998765431  1234566778889999999999999999988766443   466


Q ss_pred             HHHHHHHhc--------CChhhHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 006744          417 ILMGALLEI--------GEVKKALYLFGKMRGLNLEVNSL-SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNC  487 (632)
Q Consensus       417 ~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  487 (632)
                      .+..++...        |+.++|.+.|+.+...  .|+.. ....+... ..   ...      ...        .....
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~~~  171 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRN------RLA--------GKELY  171 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHH------HHH--------HHHHH
Confidence            666666654        7889999999999875  34432 22211111 00   000      000        11224


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          488 LTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       488 li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      +...+.+.|++++|+..+++.++..+..| ....+..+..++...|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            66778899999999999999987765544 3456778999999999999999999888765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=4.3e-05  Score=77.19  Aligned_cols=193  Identities=11%  Similarity=0.018  Sum_probs=125.5

Q ss_pred             CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH
Q 006744          375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI  454 (632)
Q Consensus       375 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll  454 (632)
                      +|-......+...+.+.|-...|..+|+++.        .|..+|.+|+..|+..+|..+..+..+  -+||..-|..+.
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erle--------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG  464 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERLE--------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG  464 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhHH--------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence            4555566777888899999999999999654        488899999999999999999888877  378888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCH
Q 006744          455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEA  534 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  534 (632)
                      +.....--+++|+++.+.....       .-..+.....+.++++++.+.|+.-++.....  ..+|-.+..++.+.+++
T Consensus       465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq--~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQ--LGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccc--hhHHHhccHHHHHHhhh
Confidence            8776666677777777655432       11122222233566666666666555433222  22444444455555666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744          535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE  587 (632)
Q Consensus       535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  587 (632)
                      +.|.+.|...+... +-+...|+.+-.+|.+.|+..+|...+++..+-+..++
T Consensus       536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w  587 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHW  587 (777)
T ss_pred             HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCC
Confidence            66666666655542 33445566666666666666666666666666554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.45  E-value=0.00011  Score=78.76  Aligned_cols=232  Identities=13%  Similarity=0.050  Sum_probs=133.5

Q ss_pred             CHHHHHHHHHHHHhCCChhHHhHHHHHHHhcC------CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          151 NFASYNALAYCLSRNNLFRAADQVPELMDSQG------RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLR  224 (632)
Q Consensus       151 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g------~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  224 (632)
                      +...+..|+..+...+++++|.++.+...+..      .+-.+. ++....+   ..+.... .++.......++..+..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~-l~~q~~~---~~~~~lv-~~l~~~~~~~~~~~ve~  104 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGI-LSLSRRP---LNDSNLL-NLIDSFSQNLKWAIVEH  104 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH-HHHhhcc---hhhhhhh-hhhhhcccccchhHHHH
Confidence            34456666666666666666666655433211      111111 1111111   1111111 44444445555555555


Q ss_pred             HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          225 VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGY  304 (632)
Q Consensus       225 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  304 (632)
                      ++..|.+.+  -+...+-.+..+|-+.|+.++|..+++++.+.... |..+.|.+...|... ++++|.+++.+.+..  
T Consensus       105 ~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--  178 (906)
T PRK14720        105 ICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR--  178 (906)
T ss_pred             HHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence            555555532  34456677777777888888888888888777644 777778888777777 788887777766543  


Q ss_pred             CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHC-CCCccccHHHH
Q 006744          305 RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL-KFSVAADLEKF  383 (632)
Q Consensus       305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~  383 (632)
                                   |...+++.++.++|.++...... +...+..+                .+.+... |..-...++..
T Consensus       179 -------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i----------------~~ki~~~~~~~~~~~~~~~  228 (906)
T PRK14720        179 -------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRI----------------ERKVLGHREFTRLVGLLED  228 (906)
T ss_pred             -------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHH----------------HHHHHhhhccchhHHHHHH
Confidence                         55666777777777777754322 22122222                2222221 22222233444


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006744          384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL  423 (632)
Q Consensus       384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  423 (632)
                      +...|...++++++..+++.+.+....|.....-++.+|.
T Consensus       229 l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        229 LYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence            4555677788888888888888887777777777777776

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.42  E-value=0.00035  Score=67.75  Aligned_cols=146  Identities=17%  Similarity=0.116  Sum_probs=97.0

Q ss_pred             hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-HHHHHHHHHHHHHcCCHHHH
Q 006744          388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-SLSFSIAIQCHVESGDILEA  466 (632)
Q Consensus       388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~g~~~~a  466 (632)
                      +...|..++|+..+..+....+.|+..+......+.+.|+.++|.+.++.+...  .|+ ......+.+++.+.|+..+|
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence            345577777777777777776667777777777777777777777777777764  454 34445556677777777777


Q ss_pred             HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          467 CECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       467 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      ..+++...... +-|+..|..|..+|...|+..+|..-..+                   ++...|+++.|+..+....+
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCCHHHHHHHHHHHHH
Confidence            77777766543 34567777777777777777766554433                   34556777777777777666


Q ss_pred             CCCCCCHHHH
Q 006744          547 EGCPPNEVIC  556 (632)
Q Consensus       547 ~g~~p~~~~~  556 (632)
                      .. +.+..+|
T Consensus       454 ~~-~~~~~~~  462 (484)
T COG4783         454 QV-KLGFPDW  462 (484)
T ss_pred             hc-cCCcHHH
Confidence            52 4444444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=0.00032  Score=62.43  Aligned_cols=116  Identities=14%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             hcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH
Q 006744          390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE  465 (632)
Q Consensus       390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~  465 (632)
                      +..+++-|++.+++|.+.+  +..+.+.|..++.+    .+++.+|.-+|++|.++ ..|+..+.+-...++...|++++
T Consensus       149 k~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ee  225 (299)
T KOG3081|consen  149 KMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEE  225 (299)
T ss_pred             HHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHH
Confidence            3344444444444444332  34444444444443    34566777777777654 46677777777777777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHh
Q 006744          466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA-AMMLVRDCL  509 (632)
Q Consensus       466 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~~  509 (632)
                      |..+++....... .++.+...+|.+-...|.-.+ ..+.+.+..
T Consensus       226 Ae~lL~eaL~kd~-~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  226 AESLLEEALDKDA-KDPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             HHHHHHHHHhccC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            7777777766542 234444444444444444332 333444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.40  E-value=6.8e-05  Score=66.60  Aligned_cols=157  Identities=13%  Similarity=0.050  Sum_probs=80.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744          279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  358 (632)
                      +-..+...|+-+....+.......... |....+..+....+.|++.+|+..|.+..... .+|...|+.+.-+|.+.|+
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence            334444455555555444443332111 33344445555555566666666555554432 3355555555555555555


Q ss_pred             hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744          359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM  438 (632)
Q Consensus       359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  438 (632)
                      ++.|..-|.+..+.... ++...+-+...|.-.|+.+.|+.++.........+..+-..+.......|++++|..+...-
T Consensus       150 ~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         150 FDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             hhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            55555555555544332 22333333333444455555555555555554445556666666666666666666655443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.38  E-value=9.9e-05  Score=78.22  Aligned_cols=119  Identities=14%  Similarity=0.101  Sum_probs=54.0

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE  259 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  259 (632)
                      +.|++++|..+++...+..+. +......+...+.+.+++++|+..+++..... +-+......+..++.+.|++++|..
T Consensus        98 ~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~  175 (694)
T PRK15179         98 AAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADA  175 (694)
T ss_pred             HcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHH
Confidence            344555555555554443211 23344444444455555555555555544432 1223333444444444455555555


Q ss_pred             HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD  301 (632)
Q Consensus       260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  301 (632)
                      +|+++...+.. +..++..+..++.+.|+.++|...|+...+
T Consensus       176 ~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        176 CFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55554442221 344444444455555555555555554443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.35  E-value=4.4e-05  Score=64.24  Aligned_cols=96  Identities=8%  Similarity=-0.137  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      +..+...+...|++++|.+.|+...... +.+...|..+..++...|++++|...|+...+.+.. +...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            4455666777777777777777777654 346677777777777777777777777777776543 66777777777777


Q ss_pred             cCCHHHHHHHHHHHHHCC
Q 006744          286 EGKVGKACDLLKDLVDSG  303 (632)
Q Consensus       286 ~g~~~~a~~~~~~m~~~g  303 (632)
                      .|+.++|...|+...+..
T Consensus       105 ~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            777777777777777654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.34  E-value=0.00077  Score=65.44  Aligned_cols=139  Identities=13%  Similarity=0.057  Sum_probs=77.5

Q ss_pred             HhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744          249 CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY  328 (632)
Q Consensus       249 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  328 (632)
                      ...|++++|+..++.+.+.-. -|........+.+.+.|+.++|.+.++.+....+. ....+-.+..+|.+.|++.+|+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai  394 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI  394 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence            344666666666666655422 24445555556666666666666666666655322 1344445556666666666666


Q ss_pred             HHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744          329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG  408 (632)
Q Consensus       329 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  408 (632)
                      .+++...... +-|...|..|..+|...|+..++..-..+.                  |...|+++.|...+....+..
T Consensus       395 ~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         395 RILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhc
Confidence            6666655443 335556666666666666655554444332                  334455566655555555443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.34  E-value=0.0062  Score=63.63  Aligned_cols=223  Identities=13%  Similarity=0.070  Sum_probs=142.2

Q ss_pred             ChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHH
Q 006744          131 NPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMI  210 (632)
Q Consensus       131 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li  210 (632)
                      +...|+.....+.++.   ||. .|...+.++...              +.|+.++|..+++.....+.. |..|...+-
T Consensus        24 qfkkal~~~~kllkk~---Pn~-~~a~vLkaLsl~--------------r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~   84 (932)
T KOG2053|consen   24 QFKKALAKLGKLLKKH---PNA-LYAKVLKALSLF--------------RLGKGDEALKLLEALYGLKGT-DDLTLQFLQ   84 (932)
T ss_pred             HHHHHHHHHHHHHHHC---CCc-HHHHHHHHHHHH--------------HhcCchhHHHHHhhhccCCCC-chHHHHHHH
Confidence            5677887777777753   443 455556555432              235556666666666655554 888999999


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC--
Q 006744          211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK--  288 (632)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--  288 (632)
                      ..|...|+.++|..+|+.....  -|+......+..+|.+.+++.+-.+.--+|-+. ..-+...|-+++..+...-.  
T Consensus        85 ~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~  161 (932)
T KOG2053|consen   85 NVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSE  161 (932)
T ss_pred             HHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCC
Confidence            9999999999999999998876  577888888888999888877655555444443 22245555555555543211  


Q ss_pred             --------HHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHccCCHHHHHHHHH-HHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744          289 --------VGKACDLLKDLVDSG-YRADLGIYNSIIGGLCRVKQFDKAYKLFE-VTVQDDLAPDFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       289 --------~~~a~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~~~  358 (632)
                              ..-|.+.++.+.+.+ ..-+..-...-...+-..|.+++|+.++. ...+.-..-+...-+.-+..+...++
T Consensus       162 ~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~  241 (932)
T KOG2053|consen  162 NELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR  241 (932)
T ss_pred             cccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC
Confidence                    234666666666653 11111111122334456788999999884 33333333333444456677778888


Q ss_pred             hhHHHHHHHHHHHCCCC
Q 006744          359 MDNFFKLLAQMEKLKFS  375 (632)
Q Consensus       359 ~~~a~~~~~~~~~~~~~  375 (632)
                      +.+..++-.++...|.+
T Consensus       242 w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  242 WQELFELSSRLLEKGND  258 (932)
T ss_pred             hHHHHHHHHHHHHhCCc
Confidence            88888888888877754

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.00032  Score=62.39  Aligned_cols=251  Identities=12%  Similarity=0.086  Sum_probs=139.7

Q ss_pred             HHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744          315 IGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI  394 (632)
Q Consensus       315 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (632)
                      ++-+.-.|.+..++..-.......  -+...-..+.++|...|.+....   .++.... .+.-.....+.......++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchh
Confidence            556666788888877666554332  23334444557777777654322   2222221 22222222233333334444


Q ss_pred             HHHH-HHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          395 MMAL-DVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK  472 (632)
Q Consensus       395 ~~a~-~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  472 (632)
                      ++-. ++.+.+...... +......-...|++.|++++|++..+...      +......=++.+.+..+.+.|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4333 333333333333 22333334456777888888887776521      222223333455667777888888888


Q ss_pred             HHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          473 IIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       473 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                      |.+-   -+-.+.+.|..++.+    .+.+.+|.-+|+++-+.  ..|+..+.+....++...|++++|..++++.....
T Consensus       163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd  237 (299)
T KOG3081|consen  163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD  237 (299)
T ss_pred             HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            7762   244556656555543    34677777777777543  35666677777777777778888888877777764


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHCC
Q 006744          549 CPPNEVICSAIISGMCKHGTLE-EARKVFTNLRERK  583 (632)
Q Consensus       549 ~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~m~~~~  583 (632)
                       ..++.+...++-+-...|.-. ...+.+..+....
T Consensus       238 -~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  238 -AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             -CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence             445666665655555555543 3445555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.30  E-value=0.00034  Score=74.26  Aligned_cols=133  Identities=12%  Similarity=-0.015  Sum_probs=91.6

Q ss_pred             CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744          342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA  421 (632)
Q Consensus       342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  421 (632)
                      +...+..|.....+.|.+++|..+++.+.+.... .......+...+.+.+++++|...+++.....+.+....+.+..+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            4566666777777777777777777777765543 334444555566777777777777777777777777777777777


Q ss_pred             HHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744          422 LLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM  476 (632)
Q Consensus       422 ~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  476 (632)
                      +.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|++..+.
T Consensus       164 l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        164 WDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            777777777777777777632 233566677777777777777777777777664

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.00078  Score=59.53  Aligned_cols=152  Identities=14%  Similarity=0.164  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHHHHh---CC-CCCCHhc-HHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744          322 KQFDKAYKLFEVTVQ---DD-LAPDFST-VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM  396 (632)
Q Consensus       322 g~~~~A~~~~~~m~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  396 (632)
                      .+.++.++++.++..   .| ..++..+ |..++-+....|+.+.|...++.+...- +-+..+...-...+-..|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhh
Confidence            345555555555542   12 3333332 3344445555666666666666655443 3333343333444455566666


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      |+++++.+.+.++.|..+|-.-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-++++++-
T Consensus       105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            666666666666556666655555555556555666555555543 344555565566666666666666666655554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.29  E-value=9.1e-05  Score=62.32  Aligned_cols=95  Identities=9%  Similarity=-0.069  Sum_probs=54.3

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK  494 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  494 (632)
                      +..+...+...|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. ..+...+..+..++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            4445555566666666666666665543 3344555555556666666666666666666543 2245555556666666


Q ss_pred             cCCHHHHHHHHHHHhhc
Q 006744          495 IGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       495 ~g~~~~A~~~~~~~~~~  511 (632)
                      .|++++|+..|+..+..
T Consensus       105 ~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359        105 MGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            66666666666665543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.12  E-value=0.0038  Score=55.36  Aligned_cols=186  Identities=15%  Similarity=0.111  Sum_probs=120.8

Q ss_pred             CHHHHHHHHHHHHhC---C-CCcCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHH
Q 006744          183 RIAEMLEILEKMRRN---L-CKPDVFA-YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRG  257 (632)
Q Consensus       183 ~~~~a~~~~~~m~~~---~-~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  257 (632)
                      +.++.++++.++...   | ..++..+ |..++-+....|+.+.|..+++++...- +-+...-..-...+-..|++++|
T Consensus        27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhH
Confidence            556666666666532   3 3455543 5556666778888888999988887663 22222222222334456888899


Q ss_pred             HHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          258 HELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       258 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      +++++.+.+.+. .|..+|-.-+-..-..|+--+|++-+....+. +..|...|..+...|...|++++|.-.++++.-.
T Consensus       106 ~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  106 IEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            999998888763 36677776666666677777777777776665 3348888999999999999999999888888754


Q ss_pred             CCCCCH-hcHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 006744          338 DLAPDF-STVNPLLVCCAEMG---RMDNFFKLLAQMEKLK  373 (632)
Q Consensus       338 ~~~p~~-~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~  373 (632)
                        .|.. ..+..+...+...|   +.+.+.++|.+..+..
T Consensus       184 --~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  184 --QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             --CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence              3333 33334444443333   4455666666666543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.10  E-value=0.00024  Score=59.37  Aligned_cols=98  Identities=17%  Similarity=0.152  Sum_probs=46.1

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      +......+...+...|++++|...|+.+...+ +.+...+..+...+...|++++|..+++...+.+ ..+...+..+..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~   93 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE   93 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence            33334444445555555555555555554432 2233444444444555555555555555544432 123334444444


Q ss_pred             HHHhcCCHHHHHHHHHHHhh
Q 006744          491 GLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~  510 (632)
                      .|...|++++|...|+..++
T Consensus        94 ~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIE  113 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555555443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.09  E-value=0.00018  Score=60.20  Aligned_cols=92  Identities=15%  Similarity=0.090  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 006744          243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK  322 (632)
Q Consensus       243 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  322 (632)
                      .+...+...|++++|.+.|+.+.+.+.. +...+..+..++.+.|++++|..+++.....+.. +...+..+...|...|
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHcC
Confidence            3344444444444444444444443322 3444444444444444444444444444443322 3333444444444555


Q ss_pred             CHHHHHHHHHHHHh
Q 006744          323 QFDKAYKLFEVTVQ  336 (632)
Q Consensus       323 ~~~~A~~~~~~m~~  336 (632)
                      ++++|...|+...+
T Consensus       100 ~~~~A~~~~~~al~  113 (135)
T TIGR02552       100 EPESALKALDLAIE  113 (135)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.07  E-value=5.7e-06  Score=50.17  Aligned_cols=33  Identities=24%  Similarity=0.467  Sum_probs=21.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD  237 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  237 (632)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.00  E-value=0.00023  Score=69.74  Aligned_cols=124  Identities=15%  Similarity=0.189  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      -..|+..+...++++.|+++|+++.+..  |++  ...++..+...++-.+|.+++.+..+.... +......-...|.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            3455566667789999999999998763  554  345777787888888999999888876443 67777777788899


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744          286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  335 (632)
                      .++.+.|+.+.+++.+..+. +..+|..|..+|.+.|+++.|+-.++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999999887543 56699999999999999999998888664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.00  E-value=1.1e-05  Score=48.91  Aligned_cols=33  Identities=33%  Similarity=0.812  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006744          310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD  342 (632)
Q Consensus       310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  342 (632)
                      +||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.98  E-value=1.1e-05  Score=48.57  Aligned_cols=32  Identities=34%  Similarity=0.584  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEA  236 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  236 (632)
                      +|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            55566666666666666666666665555544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.96  E-value=0.00045  Score=58.39  Aligned_cols=118  Identities=16%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH--HHHHHHHHHHHHcCCH
Q 006744          459 ESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE--FKYALTILHVCRSGEA  534 (632)
Q Consensus       459 ~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~  534 (632)
                      ..++...+...++.+.+....-.  ....-.+...+...|++++|...|+.++... ..+..  .....+...+...|++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHHcCCH
Confidence            36666666666666666432111  1222334466667777777777777777653 12221  1223356666677788


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      ++|+..++.....  ......+....++|.+.|++++|+..|+..
T Consensus       102 d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  102 DEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            8888877664333  234556677778888888888888887653

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.94  E-value=0.00013  Score=71.74  Aligned_cols=122  Identities=11%  Similarity=0.120  Sum_probs=85.5

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744          235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKEN--GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN  312 (632)
Q Consensus       235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  312 (632)
                      ..+......+++.+....+++++..++.+....  ....-..|..++++.|.+.|..++++.+++.=...|+-||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            445566666677777777777777777776654  222234455677777777777777777777777777777888888


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744          313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM  356 (632)
Q Consensus       313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  356 (632)
                      .||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888887777777666666666666666666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.93  E-value=0.024  Score=57.62  Aligned_cols=83  Identities=13%  Similarity=0.229  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHH
Q 006744          518 EFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEI  596 (632)
Q Consensus       518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l  596 (632)
                      .+.|-+|..--...|.++.|++.--.+.+- .+-|-..+|..|.-+.+....+-..-+.|-++....-.++....-|.++
T Consensus      1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~e~l~~a~kq~ye~L 1100 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAFEELDDAEKQEYENL 1100 (1189)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhCCHHHHHHHHHH
Confidence            344444444455667777777654443332 3456677777766665555555555555555554444444444455554


Q ss_pred             HHHH
Q 006744          597 LIEH  600 (632)
Q Consensus       597 ~~~~  600 (632)
                      -...
T Consensus      1101 a~~i 1104 (1189)
T KOG2041|consen 1101 AFRI 1104 (1189)
T ss_pred             HHHH
Confidence            4433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.92  E-value=0.00077  Score=56.93  Aligned_cols=86  Identities=17%  Similarity=0.120  Sum_probs=38.4

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC
Q 006744          455 QCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG  532 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  532 (632)
                      ..+...|++++|...|+.+.+....+.  ....-.|...+...|++++|+..++...   ........+......+.+.|
T Consensus        56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~---~~~~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP---DEAFKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc---CcchHHHHHHHHHHHHHHCC
Confidence            344445555555555555554332221  1122234444555555555555554421   11122233444555555555


Q ss_pred             CHHHHHHHHHH
Q 006744          533 EAEKIIEVLNE  543 (632)
Q Consensus       533 ~~~~a~~~~~~  543 (632)
                      ++++|...|+.
T Consensus       133 ~~~~A~~~y~~  143 (145)
T PF09976_consen  133 DYDEARAAYQK  143 (145)
T ss_pred             CHHHHHHHHHH
Confidence            55555555544

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.92  E-value=1.7e-05  Score=47.65  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEV  445 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  445 (632)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356777777777777777777777777666655

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.89  E-value=0.00047  Score=67.59  Aligned_cols=125  Identities=17%  Similarity=0.238  Sum_probs=83.3

Q ss_pred             cHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 006744          379 DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV  458 (632)
Q Consensus       379 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  458 (632)
                      .+...++..+...++++.|.++|+++.+..   +.....++..+...++-.+|.+++++..+.. +-+...+..-...|.
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            344445555556667777777777777664   3344556677777777777777777777542 334555555555677


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDC  508 (632)
Q Consensus       459 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~  508 (632)
                      +.++.+.|..+.+++.+.. +-+..+|..|..+|...|+++.|+..+..+
T Consensus       246 ~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            7788888888888777743 123557788888888888888888777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.017  Score=55.10  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=64.5

Q ss_pred             HHHHhcCChhhHHHHHHHHhhC---CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc
Q 006744          420 GALLEIGEVKKALYLFGKMRGL---NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKI  495 (632)
Q Consensus       420 ~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~  495 (632)
                      .-..+.|++.+|.+.|.+.+..   ++.++...|.....+..+.|+.++|+.--+...+..  +. +..|..-..++...
T Consensus       257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~syikall~ra~c~l~l  334 (486)
T KOG0550|consen  257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SSYIKALLRRANCHLAL  334 (486)
T ss_pred             hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HHHHHHHHHHHHHHHHH
Confidence            3455778888888888877654   244555566666667777888888887777766521  11 22233333445556


Q ss_pred             CCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744          496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHV  528 (632)
Q Consensus       496 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  528 (632)
                      ++|++|.+-|+++++.....-...++.-...++
T Consensus       335 e~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL  367 (486)
T KOG0550|consen  335 EKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL  367 (486)
T ss_pred             HHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence            778888888888776544433333443333333

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.81  E-value=0.00029  Score=53.92  Aligned_cols=77  Identities=10%  Similarity=0.261  Sum_probs=49.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHhcC--------ChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744          208 AMIRVLAAERNLDACLRVWEEMKKDLV-EADVMAYVTLIMGLCKGG--------RVVRGHELFREMKENGILIDRAIYGV  278 (632)
Q Consensus       208 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~  278 (632)
                      ..|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..        +.-..+.+|+.|...+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344455556777777777777777777 677777777777766542        22344556666666666666666666


Q ss_pred             HHHHHH
Q 006744          279 LIEGLV  284 (632)
Q Consensus       279 li~~~~  284 (632)
                      ++..+.
T Consensus       110 vl~~Ll  115 (120)
T PF08579_consen  110 VLGSLL  115 (120)
T ss_pred             HHHHHH
Confidence            665544

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.79  E-value=6.4e-05  Score=56.57  Aligned_cols=82  Identities=22%  Similarity=0.225  Sum_probs=50.0

Q ss_pred             cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006744          495 IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARK  574 (632)
Q Consensus       495 ~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~  574 (632)
                      .|+++.|+.+++++++.....++...+..+..++.+.|++++|+.++++ .+.+ +.+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4677777777777776543322444444467777777777777777776 3222 1233444455777778888888887


Q ss_pred             HHHH
Q 006744          575 VFTN  578 (632)
Q Consensus       575 ~~~~  578 (632)
                      ++++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7765

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.77  E-value=0.014  Score=55.60  Aligned_cols=150  Identities=13%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC----CCCCC--HHhHHH
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-GDILEACECHNKIIEM----SQVPS--VAAYNC  487 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~----~~~p~--~~~~~~  487 (632)
                      |...+..|...|++..|-.++.++-               ..|... |++++|.+.|++..+.    + .+.  ..++..
T Consensus        97 ~~~A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~  160 (282)
T PF14938_consen   97 YEKAIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLK  160 (282)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHH
Confidence            3344455556666666555544432               234444 5666666666665542    1 111  234455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhcCCCC----ChHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC--HHHHHH
Q 006744          488 LTKGLCKIGEIDAAMMLVRDCLGNVASG----PTEFK-YALTILHVCRSGEAEKIIEVLNEMTQE--GCPPN--EVICSA  558 (632)
Q Consensus       488 li~~~~~~g~~~~A~~~~~~~~~~~~~~----p~~~~-~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~--~~~~~~  558 (632)
                      +...+.+.|++++|+++|+++.......    .+... |-..+..+...||...|.+.+++....  ++..+  ......
T Consensus       161 ~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~  240 (282)
T PF14938_consen  161 AADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLED  240 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence            6666777777777777777765432111    12211 222333444556777777777766544  22222  234445


Q ss_pred             HHHHHHh--cCCHHHHHHHHHHHH
Q 006744          559 IISGMCK--HGTLEEARKVFTNLR  580 (632)
Q Consensus       559 l~~~~~~--~g~~~~A~~~~~~m~  580 (632)
                      |+.+|-.  ...+++|..-|+.+.
T Consensus       241 l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  241 LLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHhCCHHHHHHHHHHHcccC
Confidence            5555532  233444444444443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.76  E-value=0.00049  Score=67.72  Aligned_cols=122  Identities=11%  Similarity=0.095  Sum_probs=95.9

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHH
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL--VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG  277 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  277 (632)
                      +.+......+++.+....+++.+.+++-+.....  ...-..|.+++|+.|...|..++++.++..=...|+-||..+||
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            4466667777888888888888988888887652  22334566789999999999999999999988999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV  321 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  321 (632)
                      .||+.+.+.|++..|.++...|...+...+..++..-+.+|.+-
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999998888776655666665555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.75  E-value=3.5e-05  Score=45.09  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=17.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDL  233 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~  233 (632)
                      +|+.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45666666666666666666666665554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.71  E-value=4.8e-05  Score=44.47  Aligned_cols=29  Identities=34%  Similarity=0.775  Sum_probs=15.4

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744          310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      +|+.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555444

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.71  E-value=0.0012  Score=53.61  Aligned_cols=100  Identities=11%  Similarity=0.034  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIIS  561 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~  561 (632)
                      +-.++..+.+.|++++|.+.|+.++...+..+. ...+..+...+...|+++.|+.+++.+....  .+.....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344455555566666666666665543222111 2233335555666666666666666665432  1111344555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC
Q 006744          562 GMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       562 ~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ++.+.|+.++|.+.++++.+...
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCc
Confidence            66666666666666666666643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.70  E-value=0.0007  Score=52.12  Aligned_cols=96  Identities=19%  Similarity=0.146  Sum_probs=63.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC  564 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  564 (632)
                      +..+...+...|++++|...++++++...  .+...+..+...+...|++++|.+.++...+.. +.+..++..+..++.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence            34455666667777777777777665422  122445556666667777777777777776653 444566777777777


Q ss_pred             hcCCHHHHHHHHHHHHHCC
Q 006744          565 KHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       565 ~~g~~~~A~~~~~~m~~~~  583 (632)
                      ..|++++|.+.+....+.+
T Consensus        80 ~~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          80 KLGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHHhHHHHHHHHHHHHccC
Confidence            8888888888877766543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.69  E-value=0.002  Score=52.31  Aligned_cols=98  Identities=13%  Similarity=0.110  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHH
Q 006744          450 FSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTIL  526 (632)
Q Consensus       450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~  526 (632)
                      +......+.+.|++++|.+.|..+.+....  .....+..+..++.+.|++++|...|+.+....+..+ ....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344444555566666666666666543211  1123444566666667777777777766665433222 1234445566


Q ss_pred             HHHHcCCHHHHHHHHHHHHhC
Q 006744          527 HVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       527 ~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      .+...|+.++|...++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            666667777777777776665

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.69  E-value=0.1  Score=54.98  Aligned_cols=162  Identities=14%  Similarity=0.049  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhcCChh---hHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          414 IYNILMGALLEIGEVK---KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      +-+.|+..+-+.++..   +|+-+++.-.... +-|..+-..+|+.|+-.|-+..|.+.|+.+--..+.-|..-|- +..
T Consensus       438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~  515 (932)
T KOG2053|consen  438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFR  515 (932)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHH
Confidence            4567777888877765   4455555544432 3455556677888888899999999888887666665544332 334


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhCCCCCCHHHHHHHHHHHHhc
Q 006744          491 GLCKIGEIDAAMMLVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKIIEVLN---EMTQEGCPPNEVICSAIISGMCKH  566 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~---~m~~~g~~p~~~~~~~l~~~~~~~  566 (632)
                      .+...|++..+...+.....-.... .+..-   +|....+.|.+.+..++..   +|......--..+-+..++..+..
T Consensus       516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~  592 (932)
T KOG2053|consen  516 RAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA  592 (932)
T ss_pred             HHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4556677777777666554322111 11111   3444446666666655443   222211111122335566667777


Q ss_pred             CCHHHHHHHHHHHH
Q 006744          567 GTLEEARKVFTNLR  580 (632)
Q Consensus       567 g~~~~A~~~~~~m~  580 (632)
                      ++.+.-.+.+..|.
T Consensus       593 ~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  593 DRGTQLLKLLESMK  606 (932)
T ss_pred             CcHHHHHHHHhccc
Confidence            88887777777775

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.69  E-value=0.00095  Score=51.15  Aligned_cols=78  Identities=17%  Similarity=0.318  Sum_probs=48.3

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHcCC-cccHHhHHHHHHHHHhcCC--------HHHHHHHHHHHHHCCCCCCHhhHH
Q 006744          242 VTLIMGLCKGGRVVRGHELFREMKENGI-LIDRAIYGVLIEGLVGEGK--------VGKACDLLKDLVDSGYRADLGIYN  312 (632)
Q Consensus       242 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~--------~~~a~~~~~~m~~~g~~~~~~~~~  312 (632)
                      ...|..|...+++...-.+|+.+++.|+ .|+..+|+.++...++..-        +-..+.+|+.|...+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3445556666777777777777777777 7777777777776655321        233444555555555555555555


Q ss_pred             HHHHHHH
Q 006744          313 SIIGGLC  319 (632)
Q Consensus       313 ~li~~~~  319 (632)
                      .++..+.
T Consensus       109 ivl~~Ll  115 (120)
T PF08579_consen  109 IVLGSLL  115 (120)
T ss_pred             HHHHHHH
Confidence            5555443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.68  E-value=0.0072  Score=50.22  Aligned_cols=99  Identities=11%  Similarity=-0.012  Sum_probs=61.9

Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 006744          416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI  495 (632)
Q Consensus       416 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~  495 (632)
                      -.+...+...|++++|..+|+-+.... +-+..-|-.|.-+|-..|++++|...|.......+ -|+..+-.+..++...
T Consensus        39 Y~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l  116 (157)
T PRK15363         39 YRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC  116 (157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence            334445566777777777777766532 22333344455556666777777777777776553 3566666677777777


Q ss_pred             CCHHHHHHHHHHHhhcCCCCC
Q 006744          496 GEIDAAMMLVRDCLGNVASGP  516 (632)
Q Consensus       496 g~~~~A~~~~~~~~~~~~~~p  516 (632)
                      |+.+.|.+.|+.++...+..|
T Consensus       117 G~~~~A~~aF~~Ai~~~~~~~  137 (157)
T PRK15363        117 DNVCYAIKALKAVVRICGEVS  137 (157)
T ss_pred             CCHHHHHHHHHHHHHHhccCh
Confidence            777777777777665544333

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.68  E-value=0.061  Score=52.14  Aligned_cols=205  Identities=20%  Similarity=0.203  Sum_probs=97.2

Q ss_pred             hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc--H---HHHHHHHhh----hcccHHHHHHHHHHHHhCCCCChhH
Q 006744          344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD--L---EKFFEFLVG----KEERIMMALDVFEELKGKGYSSVPI  414 (632)
Q Consensus       344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~---~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~  414 (632)
                      .+|..++....+.++...|.+.+.-+.-........  +   -..+..+.+    ..-+...=..+|+.+...+......
T Consensus       299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQL  378 (549)
T PF07079_consen  299 DRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQL  378 (549)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence            456677777777777777777777665543321100  0   111222222    1122333444555555554442222


Q ss_pred             HHHHHH---HHHhcCC-hhhHHHHHHHHhhCCCCcC-HH----HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCC-
Q 006744          415 YNILMG---ALLEIGE-VKKALYLFGKMRGLNLEVN-SL----SFSIAIQCHVE---SGDILEACECHNKIIEMSQVPS-  481 (632)
Q Consensus       415 ~~~li~---~~~~~g~-~~~A~~~~~~m~~~~~~p~-~~----t~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~p~-  481 (632)
                      -.-|+.   -+-+.|. -++|+.+++...+-  .+. ..    ++..+-++|.+   ...+.+-..+-+-+.+.|+.|- 
T Consensus       379 vh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~  456 (549)
T PF07079_consen  379 VHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPIT  456 (549)
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCccc
Confidence            222222   2333444 56777777776653  222 22    22222233332   2333444444444445565542 


Q ss_pred             ---HHhHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006744          482 ---VAAYNCLTKG--LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC  556 (632)
Q Consensus       482 ---~~~~~~li~~--~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  556 (632)
                         ...-|.|.++  +...|++.++.-.-.-+.   .+.|+..+|..+........++++|.+++..     ++|+..++
T Consensus       457 i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~  528 (549)
T PF07079_consen  457 ISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMR  528 (549)
T ss_pred             ccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhH
Confidence               2233444332  345566666654332222   2346666666666666666666666666654     35555555


Q ss_pred             HH
Q 006744          557 SA  558 (632)
Q Consensus       557 ~~  558 (632)
                      +.
T Consensus       529 ds  530 (549)
T PF07079_consen  529 DS  530 (549)
T ss_pred             HH
Confidence            43

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.65  E-value=0.0009  Score=51.47  Aligned_cols=92  Identities=16%  Similarity=0.084  Sum_probs=45.6

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744          207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE  286 (632)
Q Consensus       207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  286 (632)
                      ..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.++...+.... +..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence            334444555555666666555555432 122244444555555555555555555555444322 233444455555555


Q ss_pred             CCHHHHHHHHHHHH
Q 006744          287 GKVGKACDLLKDLV  300 (632)
Q Consensus       287 g~~~~a~~~~~~m~  300 (632)
                      |+.+.|...+....
T Consensus        82 ~~~~~a~~~~~~~~   95 (100)
T cd00189          82 GKYEEALEAYEKAL   95 (100)
T ss_pred             HhHHHHHHHHHHHH
Confidence            55555555554444

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.63  E-value=0.014  Score=55.70  Aligned_cols=114  Identities=16%  Similarity=0.190  Sum_probs=59.1

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHH
Q 006744          244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE-GKVGKACDLLKDLVDS----GYR-ADLGIYNSIIGG  317 (632)
Q Consensus       244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~  317 (632)
                      .+..|...|++..|-+++..+               ...|-.. |++++|++.|++..+.    |.. --..++..+...
T Consensus       100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen  100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL  164 (282)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence            345556666666665555443               3344455 6777777777665532    210 012345566677


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCCC-----Hh-cHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006744          318 LCRVKQFDKAYKLFEVTVQDDLAPD-----FS-TVNPLLVCCAEMGRMDNFFKLLAQMEKL  372 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~~~~~p~-----~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~  372 (632)
                      +.+.|++++|.++|++........+     .. .|...+-++...||...|...+++....
T Consensus       165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~  225 (282)
T PF14938_consen  165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ  225 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred             HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            8888888888888887765432211     11 1222233445556666666666665543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.62  E-value=0.0013  Score=57.13  Aligned_cols=110  Identities=15%  Similarity=0.225  Sum_probs=69.7

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744          149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE  228 (632)
Q Consensus       149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  228 (632)
                      ..|..+|..+++.|.+..           ..++|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+.
T Consensus        44 ~k~K~~F~~~V~~f~~~~-----------~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~  110 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRD-----------VRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA  110 (228)
T ss_pred             cccHHHHHHHHHHHHhcC-----------CCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH
Confidence            467788888888887663           12568888888999999999999999999999988754 3321 0111111


Q ss_pred             HHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       229 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      +-               .-|  -.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus       111 ~F---------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  111 EF---------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             Hh---------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            10               000  12334455666666666666666666666666655544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.61  E-value=0.019  Score=53.04  Aligned_cols=173  Identities=10%  Similarity=0.026  Sum_probs=95.5

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHH---HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--c---
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIY---NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE--S---  460 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~---  460 (632)
                      ...|++++|.+.|+.+....+.+....   -.++.++.+.+++++|...+++..+....-...-+...+.+.+.  .   
T Consensus        43 ~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~  122 (243)
T PRK10866         43 LQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDS  122 (243)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchh
Confidence            445666677777776666554433322   34556677777788888777777765322222233333333321  1   


Q ss_pred             ------------CC---HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744          461 ------------GD---ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI  525 (632)
Q Consensus       461 ------------g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  525 (632)
                                  .|   ..+|...|+.+++.-  |+             ..-..+|...+..+...    .-...+ .+.
T Consensus       123 ~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~-------------S~ya~~A~~rl~~l~~~----la~~e~-~ia  182 (243)
T PRK10866        123 ALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PN-------------SQYTTDATKRLVFLKDR----LAKYEL-SVA  182 (243)
T ss_pred             hhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cC-------------ChhHHHHHHHHHHHHHH----HHHHHH-HHH
Confidence                        01   123444444444421  22             22233333333222111    001111 245


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQE--GCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      .-|.+.|.+..|+.-++.+++.  +.+........++.+|.+.|..++|.++...+..
T Consensus       183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            5677888888888888888876  2333455666788889999999999888776643

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.52  E-value=0.0016  Score=56.73  Aligned_cols=104  Identities=17%  Similarity=0.231  Sum_probs=78.3

Q ss_pred             cCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh
Q 006744          201 PDVFAYTAMIRVLAA-----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI  275 (632)
Q Consensus       201 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  275 (632)
                      .|..+|..++..|.+     .|..+=....+..|.+.|+.-|..+|+.||+.+=+ |.+. -..+|+.+--.        
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~h--------  114 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFMH--------  114 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhcc--------
Confidence            466677777777764     47778788888999999999999999999998875 4332 22233322211        


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744          276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ  323 (632)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  323 (632)
                             |  -.+.+-|++++++|...|+-||..++..|++.+.+.+.
T Consensus       115 -------y--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 -------Y--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -------C--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                   1  23457799999999999999999999999999988875

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.097  Score=50.19  Aligned_cols=261  Identities=13%  Similarity=0.041  Sum_probs=120.5

Q ss_pred             CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744          183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFR  262 (632)
Q Consensus       183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  262 (632)
                      ++.+|+..+...++..+. ++..|..-...+...|++++|+--.+.-.+.. .-....+.-.-+++...++..+|.+.++
T Consensus        64 ~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~  141 (486)
T KOG0550|consen   64 TYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLK  141 (486)
T ss_pred             hHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhh
Confidence            344444555555544322 34555555666666777777766555443321 1112233333344444444444444443


Q ss_pred             H---------------HHHcCC-cccHHhHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH--HHHccCC
Q 006744          263 E---------------MKENGI-LIDRAIYGVL-IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG--GLCRVKQ  323 (632)
Q Consensus       263 ~---------------m~~~~~-~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~  323 (632)
                      .               ...... .|...+|..| ..++...|+.++|..+--...+...   ...+...++  ++.-.++
T Consensus       142 ~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~  218 (486)
T KOG0550|consen  142 SKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDN  218 (486)
T ss_pred             hhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccc
Confidence            1               111111 1222233322 2445556666666666555554321   112222222  2334556


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHH
Q 006744          324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE  403 (632)
Q Consensus       324 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  403 (632)
                      .+.|...|++.+..+  |+...-..+-          ...+.++.+.+.|            ....+.|++..|.+.|.+
T Consensus       219 ~~ka~~hf~qal~ld--pdh~~sk~~~----------~~~k~le~~k~~g------------N~~fk~G~y~~A~E~Yte  274 (486)
T KOG0550|consen  219 ADKAINHFQQALRLD--PDHQKSKSAS----------MMPKKLEVKKERG------------NDAFKNGNYRKAYECYTE  274 (486)
T ss_pred             hHHHHHHHhhhhccC--hhhhhHHhHh----------hhHHHHHHHHhhh------------hhHhhccchhHHHHHHHH
Confidence            666666666655432  2222111110          0011111111111            113455666666666666


Q ss_pred             HHhCCCC----ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744          404 LKGKGYS----SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL---SFSIAIQCHVESGDILEACECHNKIIEM  476 (632)
Q Consensus       404 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~~~~a~~~~~~~~~~  476 (632)
                      ....++.    +...|.....+..+.|+.++|+.--++...    .|..   .|..-..++...+++++|.+-|++..+.
T Consensus       275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6655543    334466666666667777777666665543    2222   2222233555566777777777666654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.51  E-value=0.033  Score=47.06  Aligned_cols=135  Identities=14%  Similarity=0.038  Sum_probs=88.6

Q ss_pred             CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHH
Q 006744          443 LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA  522 (632)
Q Consensus       443 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~  522 (632)
                      ..|+...-..+..+..+.|+..+|...|++...--..-|....-.+.++....++..+|...++++.+.....-...+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            35666666667777777888888888887777644445666667777777777888888888877776543332233334


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       523 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      .+.+.+...|+...|..-|+.....  -|+...-......+.+.|+.++|..-+.++
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            4667777778888888888777765  455554444555566777766665544433

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.50  E-value=0.0027  Score=60.24  Aligned_cols=131  Identities=13%  Similarity=0.203  Sum_probs=89.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHH-HHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMG-LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      .+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467788888888888888888888887553 2233334333333 23346666688888888775 44467778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          283 LVGEGKVGKACDLLKDLVDSGYRAD---LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      +.+.|+.+.|..+|++.... +..+   ...|...+..=.+.|+.+.+.++.+.+.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888888765 2212   247888888888888888888888777653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.50  E-value=0.033  Score=51.50  Aligned_cols=59  Identities=10%  Similarity=0.024  Sum_probs=32.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLG--IYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      ....+.+.|++++|.+.|+.+...-+.....  ..-.+..+|.+.+++++|...+++..+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            3334455666666666666666543322111  1123455666667777777777666654

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.49  E-value=0.0021  Score=60.97  Aligned_cols=85  Identities=13%  Similarity=0.105  Sum_probs=33.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHH
Q 006744          461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIE  539 (632)
Q Consensus       461 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~  539 (632)
                      ++.+.|..+|+...+. +..+...|...++.+.+.|+.+.|..+|++.+....... ....|...+.-=.+.|+.+.+.+
T Consensus        50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~  128 (280)
T PF05843_consen   50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK  128 (280)
T ss_dssp             S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            3333344444444432 222334444444444444444444444444443321111 12234444444444444444444


Q ss_pred             HHHHHHh
Q 006744          540 VLNEMTQ  546 (632)
Q Consensus       540 ~~~~m~~  546 (632)
                      +.+++.+
T Consensus       129 v~~R~~~  135 (280)
T PF05843_consen  129 VEKRAEE  135 (280)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.48  E-value=0.0038  Score=51.83  Aligned_cols=95  Identities=11%  Similarity=-0.071  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      .-.+...+...|++++|..+|+.+.... +-+..-|-.|..++-..|++++|+..|......++. |...+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence            3444555667888888888888777654 235556666777777778888888888888777654 77777788888888


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 006744          286 EGKVGKACDLLKDLVDS  302 (632)
Q Consensus       286 ~g~~~~a~~~~~~m~~~  302 (632)
                      .|+.+.|.+.|+..+..
T Consensus       116 lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        116 CDNVCYAIKALKAVVRI  132 (157)
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            88888888888776654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.43  E-value=0.0037  Score=54.39  Aligned_cols=94  Identities=13%  Similarity=-0.047  Sum_probs=47.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      ..|..+...+...|++++|+..|++.......+  ...++..+...|...|+.++|+..++........ ...++..+..
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~  114 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence            344445555555566666666666555432221  1235555556666666666666666665544221 2333444444


Q ss_pred             HHH-------ccCCHHHHHHHHHH
Q 006744          317 GLC-------RVKQFDKAYKLFEV  333 (632)
Q Consensus       317 ~~~-------~~g~~~~A~~~~~~  333 (632)
                      .+.       ..|++++|...+++
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHH
Confidence            444       55666555544443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.40  E-value=0.0004  Score=52.20  Aligned_cols=20  Identities=20%  Similarity=0.288  Sum_probs=8.5

Q ss_pred             HHHHHHhcCChhHHHHHHHH
Q 006744          244 LIMGLCKGGRVVRGHELFRE  263 (632)
Q Consensus       244 li~~~~~~g~~~~a~~~~~~  263 (632)
                      +..++.+.|++++|.++++.
T Consensus        31 la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen   31 LAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             HHHHHHHTTHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            34444444444444444433

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.38  E-value=0.0072  Score=52.78  Aligned_cols=97  Identities=13%  Similarity=0.076  Sum_probs=41.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744          486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC  564 (632)
Q Consensus       486 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  564 (632)
                      ..+...+...|++++|...|++.++.....++ ...+..+...+.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus        39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~  117 (172)
T PRK02603         39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYH  117 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            33344444444444444444444332111111 1233334444444445555555444444431 223333444444444


Q ss_pred             hcCC--------------HHHHHHHHHHHHHCC
Q 006744          565 KHGT--------------LEEARKVFTNLRERK  583 (632)
Q Consensus       565 ~~g~--------------~~~A~~~~~~m~~~~  583 (632)
                      ..|+              +++|.+++++..+.+
T Consensus       118 ~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        118 KRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            4443              455566666555544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=0.0041  Score=58.92  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHhhC----C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC
Q 006744          412 VPIYNILMGALLEIGEVKKALYLFGKMRGL----N-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM-----SQVPS  481 (632)
Q Consensus       412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~p~  481 (632)
                      ...+..+..++.-.|+++.|.+.|+.....    | -.....+..++...|.-..++++|+.++.+-+..     ...-.
T Consensus       235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe  314 (639)
T KOG1130|consen  235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGE  314 (639)
T ss_pred             HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            345777888888888888888887764322    2 1234455667777777778888888887654421     11234


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~  510 (632)
                      ...+-+|..+|...|..++|+.+.+..++
T Consensus       315 ~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  315 LRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            66778899999999999999888776543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.37  E-value=0.0063  Score=60.02  Aligned_cols=88  Identities=8%  Similarity=-0.094  Sum_probs=48.5

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHH
Q 006744          213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA  292 (632)
Q Consensus       213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  292 (632)
                      +...|++++|+++|++.++.. +-+...|..+..+|...|++++|+..++++.+.... +...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence            445556666666666555543 234445555555555566666666666655554332 444555555555666666666


Q ss_pred             HHHHHHHHHC
Q 006744          293 CDLLKDLVDS  302 (632)
Q Consensus       293 ~~~~~~m~~~  302 (632)
                      +..|++....
T Consensus        90 ~~~~~~al~l   99 (356)
T PLN03088         90 KAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHh
Confidence            6666655554

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.34  E-value=0.0058  Score=60.24  Aligned_cols=102  Identities=11%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006744          245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF  324 (632)
Q Consensus       245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  324 (632)
                      ...+...|++++|++.|++.++.+.. +...|..+..+|.+.|++++|+..+++++..... +...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence            45566789999999999999987655 6788889999999999999999999999987554 667888889999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHhcHHHHH
Q 006744          325 DKAYKLFEVTVQDDLAPDFSTVNPLL  350 (632)
Q Consensus       325 ~~A~~~~~~m~~~~~~p~~~~~~~ll  350 (632)
                      ++|+..|++..+.  .|+.......+
T Consensus        87 ~eA~~~~~~al~l--~P~~~~~~~~l  110 (356)
T PLN03088         87 QTAKAALEKGASL--APGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            9999999998875  34444444444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.33  E-value=0.012  Score=51.32  Aligned_cols=93  Identities=12%  Similarity=0.065  Sum_probs=66.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD--VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL  279 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  279 (632)
                      ....|..+...+...|++++|...|++..+....+.  ...+..+..++.+.|++++|...+++..+.... +...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence            345677777788888999999999998876532221  357778888888889999999998888875433 45666677


Q ss_pred             HHHHHhcCCHHHHHHH
Q 006744          280 IEGLVGEGKVGKACDL  295 (632)
Q Consensus       280 i~~~~~~g~~~~a~~~  295 (632)
                      ...|...|+...+..-
T Consensus       113 g~~~~~~g~~~~a~~~  128 (172)
T PRK02603        113 AVIYHKRGEKAEEAGD  128 (172)
T ss_pred             HHHHHHcCChHhHhhC
Confidence            7777777775554433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.33  E-value=0.017  Score=59.71  Aligned_cols=139  Identities=9%  Similarity=0.025  Sum_probs=86.3

Q ss_pred             CcCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhc--------CCHHHHHHHHHHHh
Q 006744          444 EVNSLSFSIAIQCHVES--G---DILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKI--------GEIDAAMMLVRDCL  509 (632)
Q Consensus       444 ~p~~~t~~~ll~~~~~~--g---~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~~~~  509 (632)
                      +.|...|...+++....  +   +.+.|..+|+++++..  |+ ...|..+..++...        ++++.+.+..++..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            44555566665553322  2   2556666666666643  33 33343333322211        12334444444433


Q ss_pred             hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744          510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT  586 (632)
Q Consensus       510 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  586 (632)
                      .......+...|.++...+...|++++|...++++.+.+  |+...|..+..+|...|+.++|.+.+++....+...
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~  486 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE  486 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence            322233445667777666667789999999999988875  678888888889999999999999998888877654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.30  E-value=0.02  Score=59.20  Aligned_cols=121  Identities=17%  Similarity=0.040  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC--------ChhhHHHHHHHHhhC-CCCcCHHHHHHHHHHHHHcCCHH
Q 006744          394 IMMALDVFEELKGKGYSSVPIYNILMGALLEIG--------EVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDIL  464 (632)
Q Consensus       394 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~  464 (632)
                      .+.|..+|++..+.++.....|..+..++....        +...+.+...+.... ....+...|..+.-.....|+++
T Consensus       358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~  437 (517)
T PRK10153        358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD  437 (517)
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence            444555555555555444444444433332211        122233333332221 12233455555555555567777


Q ss_pred             HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 006744          465 EACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP  516 (632)
Q Consensus       465 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p  516 (632)
                      +|...++++++.+  |+...|..+...+...|+.++|.+.+++.+...+..|
T Consensus       438 ~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        438 EAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             HHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            7777777777654  4666677777777777777777777777665443333

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.28  E-value=0.0097  Score=54.43  Aligned_cols=95  Identities=15%  Similarity=0.113  Sum_probs=67.7

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHH
Q 006744          213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA  292 (632)
Q Consensus       213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  292 (632)
                      +.+.++|++|++.|.+.++.. +-|.+.|..-..+|++.|.++.|++=.+..+..+.. ...+|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence            567778888888888877764 346666777777888888888887777776665333 356778888888888888888


Q ss_pred             HHHHHHHHHCCCCCCHhhH
Q 006744          293 CDLLKDLVDSGYRADLGIY  311 (632)
Q Consensus       293 ~~~~~~m~~~g~~~~~~~~  311 (632)
                      ++.|++.++.  .|+-.+|
T Consensus       169 ~~aykKaLel--dP~Ne~~  185 (304)
T KOG0553|consen  169 IEAYKKALEL--DPDNESY  185 (304)
T ss_pred             HHHHHhhhcc--CCCcHHH
Confidence            8888777764  4444444

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.25  E-value=0.03  Score=51.65  Aligned_cols=111  Identities=14%  Similarity=0.138  Sum_probs=87.5

Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhCCCCCCHHH
Q 006744          479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS---GEAEKIIEVLNEMTQEGCPPNEVI  555 (632)
Q Consensus       479 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~m~~~g~~p~~~~  555 (632)
                      .-|...|..|...|...|+.+.|..-|.+..+-.+.+|+...  .+..++..+   ....++..+|+++.... +-|...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~--g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~ira  229 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILL--GLAEALYYQAGQQMTAKARALLRQALALD-PANIRA  229 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHH--HHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHH
Confidence            347889999999999999999999999999887666665443  344444332   35678999999999885 667778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhh
Q 006744          556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIV  592 (632)
Q Consensus       556 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~  592 (632)
                      ...|...+...|++.+|...|+.|.+.....++....
T Consensus       230 l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~  266 (287)
T COG4235         230 LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSL  266 (287)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHH
Confidence            8888889999999999999999999988665444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.25  E-value=0.31  Score=50.04  Aligned_cols=205  Identities=10%  Similarity=0.089  Sum_probs=127.4

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCc--------CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-LVEA--------DVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL  270 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p--------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  270 (632)
                      .|....|..|.......-.++.|...|-+...- |++.        +...-.+-|.+|  -|++++|.++|-+|.+++  
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh--
Confidence            377788888888777777777777776554432 1110        111111222222  388999999988876653  


Q ss_pred             ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHH
Q 006744          271 IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR--ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP  348 (632)
Q Consensus       271 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~  348 (632)
                             ..|..+.+.|++-.+.++++.-- .+..  --...|+.+...++....+++|.++|..-..         -..
T Consensus       765 -------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~  827 (1189)
T KOG2041|consen  765 -------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN  827 (1189)
T ss_pred             -------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence                   24567778888877766664311 1110  1235788888888888899999998875431         123


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 006744          349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEV  428 (632)
Q Consensus       349 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  428 (632)
                      .+.++.+..++++-+.+...+     +-+..+...+..++.+.|.-++|.+.|-+....        ...+..|...+++
T Consensus       828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p--------kaAv~tCv~LnQW  894 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLP--------KAAVHTCVELNQW  894 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccCc--------HHHHHHHHHHHHH
Confidence            566666666666554444332     335666777778888888888887766543221        2345667777777


Q ss_pred             hhHHHHHHHH
Q 006744          429 KKALYLFGKM  438 (632)
Q Consensus       429 ~~A~~~~~~m  438 (632)
                      .+|.++-+..
T Consensus       895 ~~avelaq~~  904 (1189)
T KOG2041|consen  895 GEAVELAQRF  904 (1189)
T ss_pred             HHHHHHHHhc
Confidence            7777776554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.25  E-value=0.0067  Score=52.78  Aligned_cols=96  Identities=10%  Similarity=0.050  Sum_probs=70.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEA--DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL  279 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  279 (632)
                      ....|..+...+...|++++|+..|++.......+  ...+|..+..++...|++++|++.+++..+.... ...++..+
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~l  112 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHH
Confidence            35567778888888999999999999987653222  2357888889999999999999999998875332 34556666


Q ss_pred             HHHHH-------hcCCHHHHHHHHHH
Q 006744          280 IEGLV-------GEGKVGKACDLLKD  298 (632)
Q Consensus       280 i~~~~-------~~g~~~~a~~~~~~  298 (632)
                      ...+.       +.|++++|...+++
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            66666       66776655555444

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.22  E-value=0.24  Score=48.15  Aligned_cols=130  Identities=15%  Similarity=0.159  Sum_probs=98.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHH-HHHH
Q 006744          448 LSFSIAIQCHVESGDILEACECHNKIIEMS-QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKY-ALTI  525 (632)
Q Consensus       448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~-~~l~  525 (632)
                      ..|...+++..+...++.|..+|-+..+.+ +.+++.++++++..++ .|+..-|.++|+--+...   ||...| +-.+
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl  473 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYL  473 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHH
Confidence            457778888888888999999999999888 5578888999998776 477888999998765443   343333 2345


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQEGCPPN--EVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      .-+..-++-+.|..+|+..+.. +..+  ..+|..+++--..-|++..+..+-++|.+.
T Consensus       474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            5666778888899999866654 3333  568889998888889998888887777665

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.20  E-value=0.004  Score=59.04  Aligned_cols=133  Identities=12%  Similarity=-0.049  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh----cCCCCChHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIE----MSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG----NVASGPTEF  519 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~p~~~  519 (632)
                      .|..+...|.-.|+++.|....+.-++    .|-. .....+..|..++.-.|+++.|.+.|+..+.    .........
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            344455555556788888777654332    2322 2245667788888888999999888876542    212222333


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh----CC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          520 KYALTILHVCRSGEAEKIIEVLNEMTQ----EG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       520 ~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      ...+|..+|.-..++++|+.++.+-..    .+ ..-....+-+|..++...|..+.|+.+...-++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            444577888888888888888765332    11 112345677888899999999998887766544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.13  E-value=0.0026  Score=44.89  Aligned_cols=59  Identities=14%  Similarity=0.201  Sum_probs=38.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       524 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      +...+...|++++|++.|++.++.. +-+...+..+..++...|++++|..+|+++.+..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3445566677777777777777664 4456667777777777777777777777776554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.11  E-value=0.095  Score=47.02  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH-----
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL-----  279 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-----  279 (632)
                      +-+.++..+.-.|.+.-..+++++.++..-+.+......|.+.-.+.||.+.|...|++..+..-..|..+++.+     
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            345555666666666666677776666554445555666666666667777777777766553333333333332     


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      ...|.-.+++..|...|.+....+.. |...-|.-.-+..-.|+..+|++.++.|.+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            23344455666666666666654332 4444444333344456666677766666654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.09  E-value=0.0025  Score=45.69  Aligned_cols=63  Identities=19%  Similarity=0.116  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 006744          519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG-TLEEARKVFTNLRER  582 (632)
Q Consensus       519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~  582 (632)
                      ..|..+...+...|++++|+..|++..+.. +.+...|..+..+|...| ++++|++.+++.++.
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            345555555666666666666666666553 445556666666666666 567777766666554

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.07  E-value=0.0022  Score=45.79  Aligned_cols=62  Identities=13%  Similarity=0.155  Sum_probs=45.2

Q ss_pred             hcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH
Q 006744          390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA  453 (632)
Q Consensus       390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l  453 (632)
                      +.|++++|+++|+.+....+.+..++..+..+|.+.|++++|..+++++...  .|+...|..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l   64 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL   64 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence            4577788888888887777777777888888888888888888888887764  4554444443

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.03  E-value=0.03  Score=44.80  Aligned_cols=55  Identities=22%  Similarity=0.225  Sum_probs=25.8

Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          457 HVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       457 ~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      +-..|+.++|..+|++..+.|....  ...+-.+...|...|++++|..++++....
T Consensus        11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~   67 (120)
T PF12688_consen   11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE   67 (120)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3344555555555555554443322  223334444455555555555555554443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.03  E-value=0.34  Score=46.63  Aligned_cols=109  Identities=16%  Similarity=0.120  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC  493 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  493 (632)
                      +.+..|.-+...|+...|.++-.+..    -||..-|...+.+++..+++++-.++...      +-++.-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence            34555666677777777777766653    47777788888888888888776665332      123466777888888


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          494 KIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE  543 (632)
Q Consensus       494 ~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  543 (632)
                      +.|+..+|..++.++           .+..-+..|.+.|++.+|.+..-+
T Consensus       249 ~~~~~~eA~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence            888888888777662           123356677788888887766544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.00  E-value=0.016  Score=54.00  Aligned_cols=100  Identities=10%  Similarity=0.057  Sum_probs=55.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAIIS  561 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l~~  561 (632)
                      |...+..+.+.|++++|+..|+.+++..+..+- ...+-.+...|...|++++|+..|+.+.+.-  -+.....+..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            444444444556666666666666655433310 1122236666666677777777776666541  1112334444555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC
Q 006744          562 GMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       562 ~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ++...|+.++|.++|+.+.+.-.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~yP  248 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKKYP  248 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCc
Confidence            66677777777777777766644

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.00  E-value=0.0084  Score=54.82  Aligned_cols=70  Identities=17%  Similarity=0.033  Sum_probs=37.2

Q ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHH
Q 006744          381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSI  452 (632)
Q Consensus       381 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~  452 (632)
                      |..-..+|.+.|.++.|++-.+.....++....+|..|..+|...|++++|++.|++..+  +.|+-.+|-.
T Consensus       118 ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLe--ldP~Ne~~K~  187 (304)
T KOG0553|consen  118 YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALE--LDPDNESYKS  187 (304)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhc--cCCCcHHHHH
Confidence            333333444444444444444444444444455566666666666666666666666555  4555555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.00  E-value=0.0028  Score=44.71  Aligned_cols=55  Identities=15%  Similarity=0.139  Sum_probs=38.1

Q ss_pred             HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744          386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG  440 (632)
Q Consensus       386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  440 (632)
                      ..+.+.|++++|.+.|+.+.+..+.+...+..+..++...|++++|...|+++.+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455667777777777777777666777777777777777777777777777665

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.93  E-value=0.17  Score=51.26  Aligned_cols=93  Identities=13%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHH---------HHHHhCCCCcCHHhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCC
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVW---------EEMKKDLVEADVMAYVTLIMGLCKGGRV--VRGHELFREMKENGI  269 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~---------~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~  269 (632)
                      +..+.+.+-+..|...|.+++|.++-         +.+...  ..+.-.++..=++|.+-.+.  -+...-+++++++|-
T Consensus       554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge  631 (1081)
T KOG1538|consen  554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGE  631 (1081)
T ss_pred             cccccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCC
Confidence            44445666666778888888876542         221111  12233344555566555443  334444566777777


Q ss_pred             cccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          270 LIDRAIYGVLIEGLVGEGKVGKACDLLKD  298 (632)
Q Consensus       270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~  298 (632)
                      .|+...   +...++-.|++.+|.++|.+
T Consensus       632 ~P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  632 TPNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             CchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence            776643   34455566777777777754

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.92  E-value=0.0034  Score=44.79  Aligned_cols=48  Identities=19%  Similarity=0.222  Sum_probs=17.8

Q ss_pred             CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV  300 (632)
Q Consensus       252 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  300 (632)
                      |++++|+++|+++.+.... +..++..+..+|.+.|++++|..+++.+.
T Consensus         5 ~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen    5 GDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             THHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             cCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3334444444443333222 33333333334444444444444443333

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.91  E-value=0.37  Score=46.86  Aligned_cols=37  Identities=11%  Similarity=-0.020  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006744          551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE  587 (632)
Q Consensus       551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~  587 (632)
                      .|--.+.+++.++.-.|+.++|.+..++|.+.....|
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            3444566778888888888888888888887764444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.91  E-value=0.28  Score=47.69  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=28.1

Q ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          516 PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       516 p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                      .+-..+.+++.++.-.|+.++|.+..++|.+..
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            556667788999999999999999999999773

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.90  E-value=0.11  Score=46.57  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             hhcccHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----
Q 006744          389 GKEERIMMALDVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-----  460 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----  460 (632)
                      ...|++++|.+.|+.+....+.   -..+.-.++.++.+.|++++|...++++.+.-..-....+...+.+.+..     
T Consensus        16 ~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~   95 (203)
T PF13525_consen   16 LQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPG   95 (203)
T ss_dssp             HHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCcc
Confidence            4445566666666665554332   23345556666777777777777777766542111111222222222111     


Q ss_pred             --------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC
Q 006744          461 --------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG  532 (632)
Q Consensus       461 --------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  532 (632)
                              +...+|...|+.++               .-|=...-..+|...+..+.+.    --...+ .+..-|.+.|
T Consensus        96 ~~~~~~D~~~~~~A~~~~~~li---------------~~yP~S~y~~~A~~~l~~l~~~----la~~e~-~ia~~Y~~~~  155 (203)
T PF13525_consen   96 ILRSDRDQTSTRKAIEEFEELI---------------KRYPNSEYAEEAKKRLAELRNR----LAEHEL-YIARFYYKRG  155 (203)
T ss_dssp             HH-TT---HHHHHHHHHHHHHH---------------HH-TTSTTHHHHHHHHHHHHHH----HHHHHH-HHHHHHHCTT
T ss_pred             chhcccChHHHHHHHHHHHHHH---------------HHCcCchHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHcc
Confidence                    11223333333333               3333333334443333332211    000111 1455667778


Q ss_pred             CHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 006744          533 EAEKIIEVLNEMTQEGCPPN---EVICSAIISGMCKHGTLEEAR  573 (632)
Q Consensus       533 ~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~A~  573 (632)
                      .+..|+.-++.+++. ++-+   ......++.+|.+.|..+.|.
T Consensus       156 ~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  156 KYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             -HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            888888888877776 2222   223456777777777776443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.90  E-value=0.48  Score=46.26  Aligned_cols=49  Identities=16%  Similarity=0.138  Sum_probs=31.7

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       529 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      ..+|++.++.-.-..+.+  +.|++.+|..++-++....++++|..++..+
T Consensus       473 ysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  473 YSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            355666666655554444  4567777777777777777777777777654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.83  E-value=0.27  Score=44.19  Aligned_cols=24  Identities=13%  Similarity=0.207  Sum_probs=10.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVD  301 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~  301 (632)
                      .++.++.+.|+++.|...++++.+
T Consensus        47 ~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   47 MLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334444444444444444444443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.80  E-value=0.095  Score=41.60  Aligned_cols=134  Identities=16%  Similarity=0.245  Sum_probs=59.9

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhc---HHHHHHHHHhcCChhHH
Q 006744          286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFST---VNPLLVCCAEMGRMDNF  362 (632)
Q Consensus       286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a  362 (632)
                      .|.+++..++..+....   -+..-+|.+|--....-+-+-..++++.+-+   ..|...   ...++.+|+..|...  
T Consensus        15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~s--   86 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKLS--   86 (161)
T ss_dssp             TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT-----
T ss_pred             hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcchH--
Confidence            46666666666666554   2444455555444444444444555544432   222222   234455555544322  


Q ss_pred             HHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 006744          363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN  442 (632)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  442 (632)
                                      ......+......|+-+...+++..+.+.+..++...-.+..+|.+.|+..++.+++.+..+.|
T Consensus        87 ----------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   87 ----------------EYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             ----------------HHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence                            2222333334444555555555555554333355555556666666666666666666665555


Q ss_pred             C
Q 006744          443 L  443 (632)
Q Consensus       443 ~  443 (632)
                      +
T Consensus       151 ~  151 (161)
T PF09205_consen  151 L  151 (161)
T ss_dssp             -
T ss_pred             h
Confidence            3

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.1  Score=48.24  Aligned_cols=99  Identities=13%  Similarity=0.090  Sum_probs=54.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc---CChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG---GRVVRGHELFREMKENGILIDRAIYGV  278 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~  278 (632)
                      |...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++...   ....++.++|+++.+.+.. |..+...
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence            55666666666666666666666666655542 23444444444444333   2345556666666655433 4555555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          279 LIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      |...+...|++.+|...|+.|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc
Confidence            555566666666666666666654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.69  E-value=0.61  Score=49.17  Aligned_cols=59  Identities=12%  Similarity=0.250  Sum_probs=33.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHHCCCCC
Q 006744          524 TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR----KVFTNLRERKLLT  586 (632)
Q Consensus       524 l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~----~~~~~m~~~~~~~  586 (632)
                      ++..+++..+.+.++.+.+..-+.    ++..|..++..+.+.+.++.-.    ++++........|
T Consensus       711 l~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ip  773 (933)
T KOG2114|consen  711 LMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIP  773 (933)
T ss_pred             HHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCC
Confidence            455556666777777666654332    6677777777777776544433    3344444444433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.68  E-value=0.14  Score=41.04  Aligned_cols=55  Identities=15%  Similarity=0.103  Sum_probs=25.6

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          212 VLAAERNLDACLRVWEEMKKDLVEAD--VMAYVTLIMGLCKGGRVVRGHELFREMKE  266 (632)
Q Consensus       212 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  266 (632)
                      ++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..+|++...
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444555555555555555443322  12333344444455555555555555443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.66  E-value=0.066  Score=52.69  Aligned_cols=62  Identities=18%  Similarity=0.068  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744          447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSV----AAYNCLTKGLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       447 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~  510 (632)
                      ...++.+..+|...|++++|...|++.++..  |+.    .+|..+..+|...|++++|+..++++++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555555666666666666666655532  331    2355555556666666666666655544

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.55  Score=42.38  Aligned_cols=132  Identities=16%  Similarity=0.118  Sum_probs=82.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccc-----cHHHHH
Q 006744          310 IYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAA-----DLEKFF  384 (632)
Q Consensus       310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l  384 (632)
                      +.+.++..+.-.|.+.-....+.+..+....-+......+.+.-.+.||.+.|..+|++..+..-..+.     .+....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344556666666777777777777776655556666666777777777777777777766543222221     222222


Q ss_pred             HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744          385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL  441 (632)
Q Consensus       385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  441 (632)
                      ...|.-.+++..|...|.++...+..+....|.-.-+..-.|+..+|++.++.|.+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            333455566667777777776666666666666666666677777777777777663

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.53  E-value=0.1  Score=44.03  Aligned_cols=58  Identities=17%  Similarity=0.228  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM  264 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  264 (632)
                      ...++..+...|++++|.++++.+.... +-|...|..+|.+|...|+..+|.+.|+.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3444455555566666666666555543 335555666666666666666666665554

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.51  E-value=0.072  Score=49.68  Aligned_cols=98  Identities=13%  Similarity=0.096  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh-HHHHHHHHH
Q 006744          450 FSIAIQCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT-EFKYALTIL  526 (632)
Q Consensus       450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~  526 (632)
                      |...+..+.+.|++++|...|+.+++.-....  ...+-.+..+|...|++++|...|+.++...+..|. ...+-.+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            33333333445666666666666665422111  234455666666667777777777666654433222 222333455


Q ss_pred             HHHHcCCHHHHHHHHHHHHhC
Q 006744          527 HVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       527 ~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      .+...|+.++|..+|++..+.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            555667777777777766655

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.44  E-value=0.013  Score=42.37  Aligned_cols=58  Identities=17%  Similarity=0.138  Sum_probs=40.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ..|.+.+++++|+++++.+...+ +.+...|.....++.+.|++++|.+.|+...+.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            34566677777777777777764 55666677777777777777777777777776654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.41  E-value=0.1  Score=43.99  Aligned_cols=68  Identities=18%  Similarity=0.266  Sum_probs=50.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCCh
Q 006744          522 ALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR-----ERKLLTEANT  590 (632)
Q Consensus       522 ~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~~  590 (632)
                      ..++..+...|++++|+.+++.+.... +-|...|..++.+|...|+..+|.++|+++.     +.|+.|.+.+
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~  138 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET  138 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence            346667778899999999999999874 6788899999999999999999999998884     4587775543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.35  E-value=0.059  Score=43.66  Aligned_cols=52  Identities=12%  Similarity=-0.001  Sum_probs=35.7

Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 006744          478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC  529 (632)
Q Consensus       478 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~  529 (632)
                      ..|+..+..+++.+|+..|++..|+++++...+..++.-+...|..|+.-+.
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4477777777777777777777777777777766666655666665555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.28  E-value=1.2  Score=43.04  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 006744          448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILH  527 (632)
Q Consensus       448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~  527 (632)
                      .+.+..+.-|...|+...|.++-.+.   + .|+...|...+.+|+..|+|++-.++...       +..+.-|...+.+
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~  246 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEA  246 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHH
Confidence            35566677778889988888876655   2 48899999999999999999988876543       2344678889999


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      |.+.|+..+|..+..++          .+..-+..|.++|++.+|.+..-+.
T Consensus       247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            99999999999998762          1256677889999999998775443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.28  E-value=0.02  Score=42.08  Aligned_cols=27  Identities=30%  Similarity=0.436  Sum_probs=15.4

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      .+++.+...|...|++++|+..|++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al   32 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKAL   32 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345556666666666666666665543

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.26  E-value=0.62  Score=39.70  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=70.7

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc-ccHHhHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL-IDRAIYGVL  279 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~l  279 (632)
                      |++..--.|..++.+.|++.+|...|++...--+.-|......+.++....+++..|...++++-+.... -+..+...+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            5555555666667777777777777776664434455666666666666667777777777666554310 012233444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 006744          280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK  329 (632)
Q Consensus       280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  329 (632)
                      ...|...|...+|+..|+...+.-..|....|  -...+.+.|+.+++..
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~a  214 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHH
Confidence            55666666666666666666654322222222  2233445555444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.23  E-value=0.028  Score=40.69  Aligned_cols=55  Identities=18%  Similarity=0.174  Sum_probs=35.6

Q ss_pred             HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744          387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL  441 (632)
Q Consensus       387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  441 (632)
                      +|.+.+++++|.++++.+...++.+...|.....++.+.|++++|...|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4555566666666666666665556666666666667777777777776666653

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.22  E-value=1.7  Score=44.45  Aligned_cols=199  Identities=16%  Similarity=0.146  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744          154 SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL  233 (632)
Q Consensus       154 ~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  233 (632)
                      -|..|...-..+=+++.|++.+.+.... ++-+.+.-+++++++|-.|+...   +...++-.|++.+|-++|.+--..+
T Consensus       587 DW~~LA~~ALeAL~f~~ARkAY~rVRdl-~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~en  662 (1081)
T KOG1538|consen  587 DWRELAMEALEALDFETARKAYIRVRDL-RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHEN  662 (1081)
T ss_pred             hHHHHHHHHHhhhhhHHHHHHHHHHhcc-HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCchh
Confidence            4555554444455566666666554432 34455566788888888888764   3445666777777777775432111


Q ss_pred             CCcCHHhHHH-----HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH------HHHC
Q 006744          234 VEADVMAYVT-----LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD------LVDS  302 (632)
Q Consensus       234 ~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~  302 (632)
                        .-...|+-     ..+-+...|..++-..+.++-.+-  .-+..-=.+....+...|+.++|..+.-+      +.+.
T Consensus       663 --RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI  738 (1081)
T KOG1538|consen  663 --RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDI  738 (1081)
T ss_pred             --hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHH
Confidence              01111111     123334444444433333322110  00111112334455566666666654311      1111


Q ss_pred             CCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          303 GYRA---DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM  369 (632)
Q Consensus       303 g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  369 (632)
                      +.+.   +..+...+...+.+...+.-|-++|.+|-.         ...++......++|.+|..+-+..
T Consensus       739 ~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h  799 (1081)
T KOG1538|consen  739 ARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH  799 (1081)
T ss_pred             HhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC
Confidence            1111   223333333334445556666666665532         234555556666666666665543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.20  E-value=0.082  Score=48.18  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG--CPPNEVICSAI  559 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~l  559 (632)
                      |+.-+. +.+.|++.+|...|...++..+..   |+...|  |..++...|+++.|..+|..+.+.-  .+--+..+.-|
T Consensus       145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         145 YNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            444333 234455666666665555443322   344444  5566666666666666666555431  11123455555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 006744          560 ISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       560 ~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      ..+..+.|+.++|..+|+++.++
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHH
Confidence            56666666666666666666655

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.18  E-value=0.45  Score=47.24  Aligned_cols=63  Identities=14%  Similarity=0.067  Sum_probs=43.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      -..+..++.+.|+.++|++.++++++..+..-+......|+.++...+.+.++..++.+-.+.
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi  324 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI  324 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence            344666667778888888888888765443333344555788888888888888888776543

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.13  E-value=0.89  Score=42.09  Aligned_cols=120  Identities=16%  Similarity=0.137  Sum_probs=67.7

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE  468 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  468 (632)
                      ...|++.+|..+|.........+...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+...
T Consensus       145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~  224 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD  224 (304)
T ss_pred             hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            45567777777777776666556666677777888888888888887776543211122222222333333333333333


Q ss_pred             HHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          469 CHNKIIEMSQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       469 ~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      +-...-.   .| |...--.+...+...|+.++|.+.+-.++..
T Consensus       225 l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         225 LQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             HHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3333332   23 4445555666666777777776666555543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.04  E-value=2.4  Score=44.40  Aligned_cols=83  Identities=16%  Similarity=0.105  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK  494 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  494 (632)
                      .+--+.-+...|+..+|.++-.+.+    -||...|..=+.+++..+++++-+++-+...      .+.-|.-.+.+|.+
T Consensus       687 l~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~  756 (829)
T KOG2280|consen  687 LHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLK  756 (829)
T ss_pred             HHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHh
Confidence            3444444555566666665555543    3555555555556666666555444433221      13334555556666


Q ss_pred             cCCHHHHHHHHHH
Q 006744          495 IGEIDAAMMLVRD  507 (632)
Q Consensus       495 ~g~~~~A~~~~~~  507 (632)
                      .|+.++|.+++-+
T Consensus       757 ~~n~~EA~KYipr  769 (829)
T KOG2280|consen  757 QGNKDEAKKYIPR  769 (829)
T ss_pred             cccHHHHhhhhhc
Confidence            6666666665544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.96  E-value=1.8  Score=42.39  Aligned_cols=405  Identities=13%  Similarity=0.118  Sum_probs=210.2

Q ss_pred             HHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744          188 LEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN  267 (632)
Q Consensus       188 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  267 (632)
                      +++=+++.++  +.|+.+|-.||.-|...|.+++..+++++|..- .+--..+|..-+.+-...+++.....+|.+....
T Consensus        29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            3555555553  458899999999999999999999999999843 2234567888888877788999999999999887


Q ss_pred             CCcccHHhHHHHHHHHHhcCCH------HHHHHHHHHHHH-CCCCC-CHhhHHHHHHHHH---ccCC------HHHHHHH
Q 006744          268 GILIDRAIYGVLIEGLVGEGKV------GKACDLLKDLVD-SGYRA-DLGIYNSIIGGLC---RVKQ------FDKAYKL  330 (632)
Q Consensus       268 ~~~p~~~~~~~li~~~~~~g~~------~~a~~~~~~m~~-~g~~~-~~~~~~~li~~~~---~~g~------~~~A~~~  330 (632)
                      .+.  ...|...++.--+.+..      ....+.|+-... .++.| ....|+..+..+-   ..|.      ++...+.
T Consensus       106 ~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~  183 (660)
T COG5107         106 SLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG  183 (660)
T ss_pred             hcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            554  55666666544443311      122233433333 34444 3445665554432   2333      3445555


Q ss_pred             HHHHHhCCCCCCHhcHHHHHHHHHh----c---------CC----hhHHHHHHHHHHH--CCCCcccc----HHHHHHH-
Q 006744          331 FEVTVQDDLAPDFSTVNPLLVCCAE----M---------GR----MDNFFKLLAQMEK--LKFSVAAD----LEKFFEF-  386 (632)
Q Consensus       331 ~~~m~~~~~~p~~~~~~~ll~~~~~----~---------~~----~~~a~~~~~~~~~--~~~~~~~~----~~~~l~~-  386 (632)
                      +.+|....+.    ...-|-+-|-.    .         |+    +-.|.+.++++..  .|......    .++-+.. 
T Consensus       184 Y~ral~tP~~----nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~  259 (660)
T COG5107         184 YMRALQTPMG----NLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAART  259 (660)
T ss_pred             HHHHHcCccc----cHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccc
Confidence            5555543221    11111111111    0         00    1123333333321  12211100    0000000 


Q ss_pred             ----------H-----hhhccc-H-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHH
Q 006744          387 ----------L-----VGKEER-I-MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS  449 (632)
Q Consensus       387 ----------~-----~~~~g~-~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t  449 (632)
                                -     +.-.|+ . ...--+++.....-+-...+|----..+...++-+.|+........  ..|.   
T Consensus       260 s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~--~sps---  334 (660)
T COG5107         260 SDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIE--MSPS---  334 (660)
T ss_pred             ccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhccc--CCCc---
Confidence                      0     000000 0 0011111111111111233333333344456666677766654433  2233   


Q ss_pred             HHHHHH-HHHHcCCHHHHHHHHHHHHH--------------CCC---------------CCCHHhHHHHHHHHHhcCCHH
Q 006744          450 FSIAIQ-CHVESGDILEACECHNKIIE--------------MSQ---------------VPSVAAYNCLTKGLCKIGEID  499 (632)
Q Consensus       450 ~~~ll~-~~~~~g~~~~a~~~~~~~~~--------------~~~---------------~p~~~~~~~li~~~~~~g~~~  499 (632)
                      ....+. .|.-..+-+....+|++..+              .+.               .--..+|.+.++.-.+..-++
T Consensus       335 L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~  414 (660)
T COG5107         335 LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLE  414 (660)
T ss_pred             hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHH
Confidence            111111 11112222222222221110              011               112345667777777888899


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHH
Q 006744          500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC-SAIISGMCKHGTLEEARKVFTN  578 (632)
Q Consensus       500 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~  578 (632)
                      .|..+|-++.+..-..++++.+++++..++ .|+...|..+|+.-... + ||...| +..+.-+...++-+.|+.+|+.
T Consensus       415 aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f-~d~~~y~~kyl~fLi~inde~naraLFet  491 (660)
T COG5107         415 AARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-F-PDSTLYKEKYLLFLIRINDEENARALFET  491 (660)
T ss_pred             HHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-C-CCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            999999998877667899999998888766 56888899999876655 3 444444 5666777888999999999985


Q ss_pred             HHHCCCCCCCChhhHHHHHHHHhhhchhHHHH
Q 006744          579 LRERKLLTEANTIVYDEILIEHMKKKTADLVL  610 (632)
Q Consensus       579 m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~  610 (632)
                      ..++=-.. .--..|..++..--..++...|.
T Consensus       492 sv~r~~~~-q~k~iy~kmi~YEs~~G~lN~v~  522 (660)
T COG5107         492 SVERLEKT-QLKRIYDKMIEYESMVGSLNNVY  522 (660)
T ss_pred             hHHHHHHh-hhhHHHHHHHHHHHhhcchHHHH
Confidence            44331110 11225556655555555544443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=95.96  E-value=2.3  Score=43.48  Aligned_cols=175  Identities=10%  Similarity=-0.004  Sum_probs=101.9

Q ss_pred             hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744          388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC  467 (632)
Q Consensus       388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~  467 (632)
                      -.+.|+.+.+.-+|++.....-.-...|-..+.-.-..|+.+-|..++....+--++-...+-..-..-+-..|+++.|.
T Consensus       307 ~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~  386 (577)
T KOG1258|consen  307 EITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAK  386 (577)
T ss_pred             hhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHH
Confidence            34667777777776665443222333455555555555888888777766655433222222111112234567999999


Q ss_pred             HHHHHHHHCCCCCCH-HhHHHHHHHHHhcCCHHHHH---HHHHHHhhcCCCCChHHHHHHHHHHH-----HHcCCHHHHH
Q 006744          468 ECHNKIIEMSQVPSV-AAYNCLTKGLCKIGEIDAAM---MLVRDCLGNVASGPTEFKYALTILHV-----CRSGEAEKII  538 (632)
Q Consensus       468 ~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~---~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~  538 (632)
                      .+++.+.+.-  |+. ..-..-+....+.|..+.+.   .++......   .-+......+..-+     .-.++.+.|.
T Consensus       387 ~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~---~~~~~i~~~l~~~~~r~~~~i~~d~~~a~  461 (577)
T KOG1258|consen  387 VILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEG---KENNGILEKLYVKFARLRYKIREDADLAR  461 (577)
T ss_pred             HHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccc---ccCcchhHHHHHHHHHHHHHHhcCHHHHH
Confidence            9999988753  442 22223345566778888777   444443321   11111222222222     2347889999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006744          539 EVLNEMTQEGCPPNEVICSAIISGMCKHGT  568 (632)
Q Consensus       539 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~  568 (632)
                      .++.+|.+. ++++...|..++..+...+.
T Consensus       462 ~~l~~~~~~-~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  462 IILLEANDI-LPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             HHHHHhhhc-CCccHHHHHHHHHHHHhCCc
Confidence            999999987 57888888888888776653

>PRK15331 chaperone protein SicA; Provisional

Probab=95.95  E-value=0.24  Score=41.65  Aligned_cols=85  Identities=16%  Similarity=0.070  Sum_probs=41.7

Q ss_pred             hcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHH
Q 006744          390 KEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACEC  469 (632)
Q Consensus       390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~  469 (632)
                      ..|++++|..+|.-+.-.++.+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|...
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~  127 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC  127 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence            44555555555555555444455555555555555555555555555443332 12233333344444455555555555


Q ss_pred             HHHHHH
Q 006744          470 HNKIIE  475 (632)
Q Consensus       470 ~~~~~~  475 (632)
                      |...++
T Consensus       128 f~~a~~  133 (165)
T PRK15331        128 FELVNE  133 (165)
T ss_pred             HHHHHh
Confidence            544444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.94  E-value=0.65  Score=37.08  Aligned_cols=61  Identities=20%  Similarity=0.309  Sum_probs=38.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          523 LTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       523 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ..+..+..+|+-+.-.++++++.+.+ .+++.....+..+|.+.|+..++.+++++.-++|+
T Consensus        91 ~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   91 LALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            34555666677777777777766543 56777777777788888888888888877777775

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.93  E-value=0.026  Score=41.54  Aligned_cols=63  Identities=13%  Similarity=0.132  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          519 FKYALTILHVCRSGEAEKIIEVLNEMTQE----GC-PPN-EVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      .+|+.+...|...|++++|++.|++..+.    |- .++ ..++..+..+|...|++++|.+++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45778899999999999999999988754    21 122 55788899999999999999999998764

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.91  E-value=0.14  Score=41.51  Aligned_cols=53  Identities=8%  Similarity=0.065  Sum_probs=39.5

Q ss_pred             CCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 006744          512 VASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE-GCPPNEVICSAIISGMC  564 (632)
Q Consensus       512 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~  564 (632)
                      .+..|+..+..+++.+|+..|++..|+++++...+. +++.+..+|..|+.=+.
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            355688888888888888888888888888877654 66667778877776444

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.90  E-value=1.8  Score=41.68  Aligned_cols=263  Identities=12%  Similarity=0.040  Sum_probs=146.5

Q ss_pred             CHHhHHHHHHH--HHhcCChhHHHHHHHHHHhCCCCcCHHh--HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHH
Q 006744          202 DVFAYTAMIRV--LAAERNLDACLRVWEEMKKDLVEADVMA--YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYG  277 (632)
Q Consensus       202 ~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  277 (632)
                      |....-.|+.+  -.-.|+++.|.+-|+.|...   |....  ...|.-..-+.|+.+.|.++-+..-..-.. -...+.
T Consensus       117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~  192 (531)
T COG3898         117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAAR  192 (531)
T ss_pred             cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHH
Confidence            44444444433  33578999999999998853   32222  222223334568888888887776655333 356777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHh--hHHHHHHHHH---ccCCHHHHHHHHHHHHhCCCCCCHhcHH-HHH
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDSG-YRADLG--IYNSIIGGLC---RVKQFDKAYKLFEVTVQDDLAPDFSTVN-PLL  350 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~--~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll  350 (632)
                      ..+...+..|+++.|+++++.-.... +.++..  .-..|+.+-.   -.-+...|...-.+..+  +.||..--. .-.
T Consensus       193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA  270 (531)
T COG3898         193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA  270 (531)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence            88888888999999998888766542 223322  1122222211   11234445444444332  344443322 233


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH-HHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 006744          351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-DVFEELKGKGYSSVPIYNILMGALLEIGEVK  429 (632)
Q Consensus       351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  429 (632)
                      .++.+.|+..++-.+++.+-+....|+.  .  .+..+.+.|+..... +-.+.+....+.+..+.-.+..+-...|++.
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~  346 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS  346 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence            6777888888888888888776554432  1  122234444432211 1111222222225566666667777777777


Q ss_pred             hHHHHHHHHhhCCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 006744          430 KALYLFGKMRGLNLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEM  476 (632)
Q Consensus       430 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~  476 (632)
                      .|..--+....  ..|....|..|.+.-. ..|+-.++.+.+.+..+.
T Consensus       347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            66665555544  3566666666666433 347777777777776654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.89  E-value=2.5  Score=46.77  Aligned_cols=26  Identities=8%  Similarity=0.215  Sum_probs=13.7

Q ss_pred             HHHHHHHHHhcC--ChhHHHHHHHHHHH
Q 006744          241 YVTLIMGLCKGG--RVVRGHELFREMKE  266 (632)
Q Consensus       241 ~~~li~~~~~~g--~~~~a~~~~~~m~~  266 (632)
                      ...+|.+|.+.+  .+++|++...+...
T Consensus       793 ~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  793 NLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             hHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            344555666555  55555555555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=95.86  E-value=1.8  Score=41.58  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=57.7

Q ss_pred             HHHHHHHHHh--cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHcCCcccHHhHH----
Q 006744          206 YTAMIRVLAA--ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGL--CKGGRVVRGHELFREMKENGILIDRAIYG----  277 (632)
Q Consensus       206 ~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----  277 (632)
                      |..|-.++..  .|+-..|.++-.+-.+. +.-|....-.++.+-  .-.|+++.|.+-|+.|..     |..+-.    
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLR  158 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLR  158 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHH
Confidence            5555555443  34555555444433211 122333333333322  233666666666666654     222222    


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  335 (632)
                      .|.-.--+.|+.+.|..+-++.-..-.. -...+...+...|..|+++.|+++++.-.
T Consensus       159 gLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~  215 (531)
T COG3898         159 GLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQR  215 (531)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            1222223455555555555555443222 23455556666666666666666665444

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.85  E-value=0.24  Score=50.05  Aligned_cols=146  Identities=16%  Similarity=0.143  Sum_probs=77.3

Q ss_pred             CCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHH-------HHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744          129 ENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQV-------PELMDSQGRIAEMLEILEKMRRNLCKP  201 (632)
Q Consensus       129 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l-------~~~~~~~g~~~~a~~~~~~m~~~~~~~  201 (632)
                      .++.+.+.+....-.--..++  ....+.++..+-+.|..+.|.++       |+...+.|+++.|.++.++.      .
T Consensus       274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~------~  345 (443)
T PF04053_consen  274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL------D  345 (443)
T ss_dssp             TT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC------S
T ss_pred             cCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc------C
Confidence            456666555554211112222  44588999999999999998876       45555666666666654333      3


Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +...|..|.....+.|+++-|.+.|.+..         -|..|+-.|.-.|+.+.-.++.+.....|-      ++....
T Consensus       346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~  410 (443)
T PF04053_consen  346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ  410 (443)
T ss_dssp             THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence            55566666666666666666666666543         234455555556666555555555544432      334444


Q ss_pred             HHHhcCCHHHHHHHHH
Q 006744          282 GLVGEGKVGKACDLLK  297 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~  297 (632)
                      ++.-.|+.++..+++.
T Consensus       411 ~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  411 AALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHHHHT-HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            4444555555555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.80  E-value=0.44  Score=40.07  Aligned_cols=88  Identities=16%  Similarity=0.137  Sum_probs=52.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      -+...|++++|..+|.-+...++. +...|..|..++-..+++++|+..|......+.. |...+-....++...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence            344567777777777666665443 4555666666666667777777777655443321 33334445566666677666


Q ss_pred             HHHHHHHHHH
Q 006744          362 FFKLLAQMEK  371 (632)
Q Consensus       362 a~~~~~~~~~  371 (632)
                      |...|....+
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            6666666555

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.80  E-value=0.055  Score=48.98  Aligned_cols=110  Identities=12%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744          149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE  228 (632)
Q Consensus       149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  228 (632)
                      +.|-.+|-..+..+...           ....++.++-....++.|.+.|+..|..+|+.|++.+-+..-.         
T Consensus        64 ~RdK~sfl~~V~~F~E~-----------sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi---------  123 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEK-----------SVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI---------  123 (406)
T ss_pred             cccHHHHHHHHHHHHHh-----------hhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc---------
Confidence            44555665555555432           1224566777777888999999999999999998876443211         


Q ss_pred             HHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          229 MKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       229 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                             |.. .+..+.--|-  .+-+-+++++++|...|+-||..+-..|++++.+.+.
T Consensus       124 -------P~n-vfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  124 -------PQN-VFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             -------cHH-HHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                   111 0111111111  1123355566666666666666666666666655554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.71  E-value=0.64  Score=47.77  Aligned_cols=120  Identities=14%  Similarity=0.095  Sum_probs=58.2

Q ss_pred             hcCCHHHHHHHHHHHHhC-CCCcC-----HHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcCHHhHHHH-HHHH
Q 006744          180 SQGRIAEMLEILEKMRRN-LCKPD-----VFAYTAMIRVLAA----ERNLDACLRVWEEMKKDLVEADVMAYVTL-IMGL  248 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-i~~~  248 (632)
                      =.|+-+.+++++.+..+. ++.-.     ...|+..+..++.    ..+.+.|.++++.+.+.  -|+...|... .+.+
T Consensus       200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~  277 (468)
T PF10300_consen  200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLE  277 (468)
T ss_pred             cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            345555555555554432 12111     1124444443332    34556677777777665  4665555443 2344


Q ss_pred             HhcCChhHHHHHHHHHHHcCC---cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          249 CKGGRVVRGHELFREMKENGI---LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD  301 (632)
Q Consensus       249 ~~~g~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  301 (632)
                      ...|++++|++.|++......   +.....+--+.-++.-.+++++|.+.|..+.+
T Consensus       278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~  333 (468)
T PF10300_consen  278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK  333 (468)
T ss_pred             HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence            455777777777775442100   01122233333444455555555555555554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.67  E-value=0.2  Score=45.55  Aligned_cols=115  Identities=17%  Similarity=0.171  Sum_probs=77.3

Q ss_pred             cCHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh
Q 006744          201 PDVFAYTAMIRVLAA-----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI  275 (632)
Q Consensus       201 ~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  275 (632)
                      .|-.+|-+.+..+..     .+.++-....++.|.+.|++.|..+|+.||+.+-+..-+.  ..+|+.            
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~------------  130 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK------------  130 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH------------
Confidence            456666666666543     3566666777888999999999999999998776543221  122222            


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH-HHHHHHHHHH
Q 006744          276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF-DKAYKLFEVT  334 (632)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m  334 (632)
                         ..-.|=+  +-+-+++++++|...|+.||-.+-..|++++.+.+.. .+..++.--|
T Consensus       131 ---~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm  185 (406)
T KOG3941|consen  131 ---VFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM  185 (406)
T ss_pred             ---HHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence               1112222  2345789999999999999999999999999988763 3333333333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.64  E-value=1.5  Score=39.20  Aligned_cols=147  Identities=13%  Similarity=0.124  Sum_probs=88.1

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHH
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNC  487 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~  487 (632)
                      ..|+--...|..+|..+.|-..+++.-+.                ....+.++|+++|++....-..     --...+..
T Consensus        92 dl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk  155 (308)
T KOG1585|consen   92 DLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK  155 (308)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence            34666677788888887776666654331                2334555666666554431101     11233455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhh---cCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHH
Q 006744          488 LTKGLCKIGEIDAAMMLVRDCLG---NVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEG---CPPNEVICSAII  560 (632)
Q Consensus       488 li~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~l~  560 (632)
                      +...|++...+++|-..+.+-..   .....++. ..|-..|..+....++..|..+++.-.+.+   -.-+..+...|+
T Consensus       156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL  235 (308)
T KOG1585|consen  156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLL  235 (308)
T ss_pred             hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHH
Confidence            56667777777777666554211   11111222 235556667777789999999998855432   234566788888


Q ss_pred             HHHHhcCCHHHHHHHH
Q 006744          561 SGMCKHGTLEEARKVF  576 (632)
Q Consensus       561 ~~~~~~g~~~~A~~~~  576 (632)
                      .+| ..|+.+++.+++
T Consensus       236 ~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  236 TAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHh-ccCCHHHHHHHH
Confidence            877 788888877764

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.60  E-value=1.1  Score=37.34  Aligned_cols=32  Identities=6%  Similarity=-0.005  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006744          394 IMMALDVFEELKGKGYSSVPIYNILMGALLEI  425 (632)
Q Consensus       394 ~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  425 (632)
                      .......++.+...+..+...+|.++..|++.
T Consensus        23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~   54 (140)
T smart00299       23 LEELIPYLESALKLNSENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHHHHHHccCccchhHHHHHHHHHHHH
Confidence            33333333333333322444455555555443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.59  E-value=1.2  Score=41.83  Aligned_cols=116  Identities=13%  Similarity=0.009  Sum_probs=60.4

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHH--H--HHHHhcCChh
Q 006744          285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL--L--VCCAEMGRMD  360 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l--l--~~~~~~~~~~  360 (632)
                      ..|+..+|...++++.+.-++ |...++-.-++|.-+|+.+.-...++++... ..+|...|..+  +  -++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            456666777777777665333 6666666667777777777766666666532 12333222211  1  2233455566


Q ss_pred             HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHH
Q 006744          361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEE  403 (632)
Q Consensus       361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  403 (632)
                      +|++.-++..+.+. .+..........+...|+..++.+...+
T Consensus       193 dAEk~A~ralqiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  193 DAEKQADRALQINR-FDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             hHHHHHHhhccCCC-cchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            66555555544332 1233333444444445555555554443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.59  E-value=4.9  Score=44.62  Aligned_cols=154  Identities=17%  Similarity=0.119  Sum_probs=88.3

Q ss_pred             ccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHH----HHHHHHcCCHHHHH
Q 006744          392 ERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIA----IQCHVESGDILEAC  467 (632)
Q Consensus       392 g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l----l~~~~~~g~~~~a~  467 (632)
                      ++++.|+..+.++.      ...|.-.++.--++|.+.+|+.++        .|+...+..+    .+.+...+.+++|.
T Consensus       894 ~ry~~AL~hLs~~~------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aa  959 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAA  959 (1265)
T ss_pred             HHHHHHHHHHHHcC------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHH
Confidence            45555555555443      223444555555666666666654        4555544443    44455566777776


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK--YALTILHVCRSGEAEKIIEVLNEMT  545 (632)
Q Consensus       468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~  545 (632)
                      -.|+..-+         ..-.+.+|..+|+|++|+.+..++-.    ..+...  -..|+.-+...++.-+|-+++.+..
T Consensus       960 l~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen  960 LMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence            66654422         23456677788888888887776432    223222  1346666667788888888777765


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  580 (632)
                      ..        ....+..|++...|++|.++.....
T Consensus      1027 sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             cC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence            43        2233345556667777776654443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.59  E-value=0.92  Score=37.84  Aligned_cols=120  Identities=13%  Similarity=0.155  Sum_probs=61.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744          177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR  256 (632)
Q Consensus       177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  256 (632)
                      .+.+.|........++.+...+. .+...++.++..|++.+. ++.++.++.      ..+......++..|.+.+.+++
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~   87 (140)
T smart00299       16 LFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAKLYEE   87 (140)
T ss_pred             HHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcCcHHH
Confidence            33333445555555655555543 466667777777776532 333333331      1233444456666666666666


Q ss_pred             HHHHHHHHHHcCCcccHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744          257 GHELFREMKENGILIDRAIYGVLIEGLVGE-GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC  319 (632)
Q Consensus       257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  319 (632)
                      +.-++.++..         |...+..+... ++.+.|.+++.+-      -+...|..++..+.
T Consensus        88 ~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l  136 (140)
T smart00299       88 AVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence            6666655422         12223333333 5666666665541      14456666665554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.55  E-value=0.095  Score=51.61  Aligned_cols=118  Identities=12%  Similarity=0.031  Sum_probs=85.1

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006744          481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI  559 (632)
Q Consensus       481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  559 (632)
                      +...++.+..+|.+.|++++|+..|++.++..+..+.. ..|..+..+|...|+.++|++.++++.+.+ .+   .|..+
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~i  149 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFSTI  149 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHHH
Confidence            47788999999999999999999999988664333322 457789999999999999999999999863 22   23221


Q ss_pred             HH--HHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744          560 IS--GMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK  602 (632)
Q Consensus       560 ~~--~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~  602 (632)
                      ..  .+....+.++..++++.+.+-|........+...|+.+...
T Consensus       150 ~~DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~a  194 (453)
T PLN03098        150 LNDPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQA  194 (453)
T ss_pred             HhCcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhc
Confidence            11  11123344578888998998887666566666666666554

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=95.54  E-value=0.034  Score=57.14  Aligned_cols=14  Identities=21%  Similarity=0.384  Sum_probs=5.4

Q ss_pred             HhhHHHHHHHHHcc
Q 006744          308 LGIYNSIIGGLCRV  321 (632)
Q Consensus       308 ~~~~~~li~~~~~~  321 (632)
                      ..+|..=|+.+|+.
T Consensus       838 a~afgF~is~L~kL  851 (1102)
T KOG1924|consen  838 AQAFGFNISFLCKL  851 (1102)
T ss_pred             chhhccchHHHHhh
Confidence            33333334444433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.52  E-value=0.33  Score=49.08  Aligned_cols=133  Identities=14%  Similarity=0.138  Sum_probs=82.0

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ..-.+.++..+-+.|..+.|+++-.+-.            .-.....+.|+++.|.++.++.      .+...|..|.+.
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~  356 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence            3446777777777888888877653321            2234455677777777765432      256678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHH
Q 006744          283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF  362 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  362 (632)
                      ..+.|+++-|++.|++..+         |..|+-.|.-.|+.+...++.+.....|      -++....++.-.|+.++.
T Consensus       357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~c  421 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEEC  421 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred             HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHH
Confidence            8888888888877776543         4556666777777777777776666554      245555566666777666


Q ss_pred             HHHHHH
Q 006744          363 FKLLAQ  368 (632)
Q Consensus       363 ~~~~~~  368 (632)
                      .+++..
T Consensus       422 v~lL~~  427 (443)
T PF04053_consen  422 VDLLIE  427 (443)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.52  E-value=0.76  Score=47.24  Aligned_cols=118  Identities=20%  Similarity=0.152  Sum_probs=69.7

Q ss_pred             cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC---CCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744          391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN---LEVNSLSFSIAIQCHVESGDILEAC  467 (632)
Q Consensus       391 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~t~~~ll~~~~~~g~~~~a~  467 (632)
                      ....+.|.+++..+.++-+.+..-.-.-.+.+...|++++|++.|++.....   .+.....+--+.-.+.-..++++|.
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~  325 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA  325 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence            4566777777777777655444444444556666777888877777654321   1222334445555666777777777


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHH-HHHhcCCH-------HHHHHHHHHHh
Q 006744          468 ECHNKIIEMSQVPSVAAYNCLTK-GLCKIGEI-------DAAMMLVRDCL  509 (632)
Q Consensus       468 ~~~~~~~~~~~~p~~~~~~~li~-~~~~~g~~-------~~A~~~~~~~~  509 (632)
                      +.|..+.+.. ..+..+|..+.- ++...|+.       ++|.++|+++.
T Consensus       326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            7777777643 234444443332 33455666       67777776654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.45  E-value=2  Score=39.12  Aligned_cols=172  Identities=15%  Similarity=0.078  Sum_probs=97.5

Q ss_pred             hhcccHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----
Q 006744          389 GKEERIMMALDVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-----  460 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----  460 (632)
                      .+.|++++|.+.|+.+....+.   ...+--.++.++-+.+++++|+..+++....--.-...-|...|.+.+.-     
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~  124 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD  124 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence            3557777777777777766544   34456666777788888888888888877653222333444445444421     


Q ss_pred             --CCHHH---HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH-HH-HHHHHHHHcCC
Q 006744          461 --GDILE---ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK-YA-LTILHVCRSGE  533 (632)
Q Consensus       461 --g~~~~---a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~-~~-~l~~~~~~~g~  533 (632)
                        .|...   |..-|+.+++.  -||..-             ...|...+..+.       |... ++ .+.+-|.+.|.
T Consensus       125 ~~rDq~~~~~A~~~f~~~i~r--yPnS~Y-------------a~dA~~~i~~~~-------d~LA~~Em~IaryY~kr~~  182 (254)
T COG4105         125 VTRDQSAARAAFAAFKELVQR--YPNSRY-------------APDAKARIVKLN-------DALAGHEMAIARYYLKRGA  182 (254)
T ss_pred             cccCHHHHHHHHHHHHHHHHH--CCCCcc-------------hhhHHHHHHHHH-------HHHHHHHHHHHHHHHHhcC
Confidence              22222   33333333332  122110             011111111100       0000 00 24566778888


Q ss_pred             HHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          534 AEKIIEVLNEMTQEGCPPNEV---ICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       534 ~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      +..|..-+++|++. .+-...   .+-.+..+|...|..++|.+.-+-+...-
T Consensus       183 ~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~  234 (254)
T COG4105         183 YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY  234 (254)
T ss_pred             hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence            99999999998887 444433   34566778888999999888877766553

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.29  E-value=1.1  Score=42.59  Aligned_cols=127  Identities=12%  Similarity=0.112  Sum_probs=65.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh---cCCCCChHHHHHH-
Q 006744          453 AIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG---NVASGPTEFKYAL-  523 (632)
Q Consensus       453 ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~p~~~~~~~-  523 (632)
                      +..++...+.++++++.|+...+.-..     ....++..|...|.+..++++|.-+..+..+   ..+.+.-...|.. 
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            444555555666666666655542111     1234566666777777777776655554432   2222211222322 


Q ss_pred             ----HHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          524 ----TILHVCRSGEAEKIIEVLNEMTQEGC-PPNEVI----CSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       524 ----l~~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                          |..++-..|....|.+..++..+..+ .-|..+    ...+.+.|...|+.+.|..-|+..
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence                33445556666666666665443210 013333    345666677777777766655544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.29  E-value=1.3  Score=37.66  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhhhh
Q 006744          556 CSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLKFF  616 (632)
Q Consensus       556 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~~~  616 (632)
                      +..++..+...|++-+|.++.+.....+-      +.-..++.+..+.+|........+++
T Consensus        92 ~~~iievLL~~g~vl~ALr~ar~~~~~~~------~~~~~fLeAA~~~~D~~lf~~V~~ff  146 (167)
T PF07035_consen   92 YEEIIEVLLSKGQVLEALRYARQYHKVDS------VPARKFLEAAANSNDDQLFYAVFRFF  146 (167)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCccc------CCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33445555566666666665544322111      12234455554444444444444433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.23  E-value=2.9  Score=39.74  Aligned_cols=46  Identities=13%  Similarity=0.089  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744          396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL  441 (632)
Q Consensus       396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  441 (632)
                      +|.++++.+.........++-.-+..+.+.++.+++.+++.+|...
T Consensus       105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen  105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            3444444444333334555555556666666677777777777654

It is also involved in sporulation [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.23  E-value=1.6  Score=46.31  Aligned_cols=140  Identities=14%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      .+.+.|++++|...|-+-... +.|     ..+|.-|....++.+-..+++.+.+.|+. +...-..|+.+|.+.++.++
T Consensus       377 ~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~k  449 (933)
T KOG2114|consen  377 YLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEK  449 (933)
T ss_pred             HHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHH
Confidence            334455555555555443321 111     12344445555555555555555555543 33344455555555555555


Q ss_pred             HHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744          362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKM  438 (632)
Q Consensus       362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  438 (632)
                      -.++.+... .|.-  ..-....+..+.+.+-.++|..+-.+....    .   ..+--.+-..+++++|++++..|
T Consensus       450 L~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~h----e---~vl~ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  450 LTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKKH----E---WVLDILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhccC----H---HHHHHHHHHhcCHHHHHHHHhcC
Confidence            444443322 1110  001233333444444444444444333321    1   12222233456666666666554

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.19  E-value=0.42  Score=46.15  Aligned_cols=139  Identities=18%  Similarity=0.066  Sum_probs=91.4

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 006744          350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK  429 (632)
Q Consensus       350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  429 (632)
                      .+.+.+.|++..|...|+++...=-             |...-+.++.... ..+      -..+++.+..+|.+.+++.
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~-------------~~~~~~~ee~~~~-~~~------k~~~~lNlA~c~lKl~~~~  274 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLE-------------YRRSFDEEEQKKA-EAL------KLACHLNLAACYLKLKEYK  274 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhh-------------ccccCCHHHHHHH-HHH------HHHHhhHHHHHHHhhhhHH
Confidence            4677888888888888887654210             1111111111111 111      2445888889999999999


Q ss_pred             hHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHH-HHHHHHHH
Q 006744          430 KALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEID-AAMMLVRD  507 (632)
Q Consensus       430 ~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~-~A~~~~~~  507 (632)
                      +|+..-......+ +.|....-.=.++|...|+++.|+..|+++++..  |+ ..+-+.|+.+-.+..+.. ...++|..
T Consensus       275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~  351 (397)
T KOG0543|consen  275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYAN  351 (397)
T ss_pred             HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999888888765 5677777777788899999999999999998854  43 444555555555544443 34677777


Q ss_pred             Hhhc
Q 006744          508 CLGN  511 (632)
Q Consensus       508 ~~~~  511 (632)
                      |...
T Consensus       352 mF~k  355 (397)
T KOG0543|consen  352 MFAK  355 (397)
T ss_pred             Hhhc
Confidence            7654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.19  E-value=0.35  Score=44.23  Aligned_cols=98  Identities=17%  Similarity=0.237  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH-HHHHHHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE-FKYALTI  525 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~-~~~~~l~  525 (632)
                      .|+.-+.. .+.|++..|...|...++....  -....+-.|..++...|++++|..+|..+.+..+..|-. ..+--|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            45555543 4566688888888777775322  123344557788888888888888888887766555443 4555567


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      ....+.|+.++|..+|++..+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            7777788888888888888776

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.08  E-value=5.3  Score=41.99  Aligned_cols=324  Identities=12%  Similarity=0.090  Sum_probs=171.1

Q ss_pred             hCCCCcCHHhHH-----HHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCH--HHHHHHHHHHHHCC
Q 006744          231 KDLVEADVMAYV-----TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV--GKACDLLKDLVDSG  303 (632)
Q Consensus       231 ~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g  303 (632)
                      ..|++.+..-|.     .+|+-+...+.+..|.++-..+...-.. ...+|.....-+.+..+.  +++.+.+++=.+.-
T Consensus       425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~  503 (829)
T KOG2280|consen  425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK  503 (829)
T ss_pred             ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence            346666665554     4567777788899999887766443222 256777777777766432  23333333322222


Q ss_pred             CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCC-----
Q 006744          304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL----APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-----  374 (632)
Q Consensus       304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----  374 (632)
                      . -+...|..+.......|+.+-|..+++.=...+.    -.+..-+...+.-+...|+.+....++-.+.+.-.     
T Consensus       504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~  582 (829)
T KOG2280|consen  504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF  582 (829)
T ss_pred             C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence            2 2556777788878889999999988864322221    11333456666777788888887777766644311     


Q ss_pred             ------CccccHHHHHHHH--------hhhcccHHHHHHHHH--HHHhCCC-C-ChhHHHHHHHHHHhcCChh-------
Q 006744          375 ------SVAADLEKFFEFL--------VGKEERIMMALDVFE--ELKGKGY-S-SVPIYNILMGALLEIGEVK-------  429 (632)
Q Consensus       375 ------~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~--~~~~~~~-~-~~~~~~~li~~~~~~g~~~-------  429 (632)
                            +....+|..++.-        +...++-.++...|.  ....... . -..........+.+.....       
T Consensus       583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e  662 (829)
T KOG2280|consen  583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE  662 (829)
T ss_pred             HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence                  1111111111110        001111111111111  0000000 0 0111222223333322211       


Q ss_pred             ---hHHHHHHHHhhC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744          430 ---KALYLFGKMRGL-NLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV  505 (632)
Q Consensus       430 ---~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  505 (632)
                         +-+.+.+.+... |......+.+--+.-+...|+..+|.++-.++.    .||-..|-.=+.+++..+++++-+++-
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA  738 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA  738 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence               111122222211 223344455555666667777777777665543    467777777777788888887777666


Q ss_pred             HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006744          506 RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVF  576 (632)
Q Consensus       506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~  576 (632)
                      +...       .+.-|...+.+|.+.|+.++|.+++.+..     +..    -.+.+|.+.|++.+|.++-
T Consensus       739 kskk-------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  739 KSKK-------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             hccC-------CCCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence            5422       23445567777788888888887775532     111    4667777778877777654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.03  E-value=0.68  Score=36.85  Aligned_cols=92  Identities=16%  Similarity=0.039  Sum_probs=68.2

Q ss_pred             HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH---HHHHHHHHHHHcCCH
Q 006744          387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL---SFSIAIQCHVESGDI  463 (632)
Q Consensus       387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~g~~  463 (632)
                      +.+..|+++.|++.|.+.....+.....||.-..++--.|+.++|+.=+++..+..-.-...   .|..-...|...|+.
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            45677888889888888888777788889999999999999999998888877652122222   233333356678888


Q ss_pred             HHHHHHHHHHHHCCC
Q 006744          464 LEACECHNKIIEMSQ  478 (632)
Q Consensus       464 ~~a~~~~~~~~~~~~  478 (632)
                      +.|..-|+...+.|.
T Consensus       132 d~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  132 DAARADFEAAAQLGS  146 (175)
T ss_pred             HHHHHhHHHHHHhCC
Confidence            888888888777663

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.92  E-value=2.2  Score=42.68  Aligned_cols=165  Identities=12%  Similarity=0.114  Sum_probs=95.8

Q ss_pred             cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006744          425 IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML  504 (632)
Q Consensus       425 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  504 (632)
                      ..+...-.+.-++..+  +.||..+.-.++ +--......++.+++++..+.|-.    .+..- ......|..-++   
T Consensus       181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~----~lg~s-~~~~~~g~~~e~---  249 (539)
T PF04184_consen  181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA----SLGKS-QFLQHHGHFWEA---  249 (539)
T ss_pred             cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH----hhchh-hhhhcccchhhh---
Confidence            3344444444444444  345554433333 223455678888888887765421    00000 000111211111   


Q ss_pred             HHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          505 VRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       505 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      +    ......+-...=..+..++-+.|+.++|++.+++|.+.. ...+..+...|+.++...+.+.++..++.+-.+..
T Consensus       250 ~----~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~  325 (539)
T PF04184_consen  250 W----HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS  325 (539)
T ss_pred             h----hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence            0    000112222222346666678899999999999998753 11245578899999999999999999999975433


Q ss_pred             CCCCCChhhHHHHHHHHhhhch
Q 006744          584 LLTEANTIVYDEILIEHMKKKT  605 (632)
Q Consensus       584 ~~~~~~~~~~~~l~~~~~~~~~  605 (632)
                       .|....+.|+..+...-..+|
T Consensus       326 -lpkSAti~YTaALLkaRav~d  346 (539)
T PF04184_consen  326 -LPKSATICYTAALLKARAVGD  346 (539)
T ss_pred             -CCchHHHHHHHHHHHHHhhcc
Confidence             456788999988876655433

The molecular function of this protein is uncertain.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.91  E-value=2.9  Score=38.07  Aligned_cols=196  Identities=20%  Similarity=0.129  Sum_probs=108.5

Q ss_pred             HHhhhcccHHHHHHHHHHHHh--CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH-HHHHcCC
Q 006744          386 FLVGKEERIMMALDVFEELKG--KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ-CHVESGD  462 (632)
Q Consensus       386 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~-~~~~~g~  462 (632)
                      ..+...+++..+...+.....  ........+......+...+++..+...+.........+ ......... .+...|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  145 (291)
T COG0457          67 LALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGD  145 (291)
T ss_pred             HHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCC
Confidence            334444445555544444443  222244455555566666666666766666666543222 111222222 5667777


Q ss_pred             HHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 006744          463 ILEACECHNKIIEMSQ--VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV  540 (632)
Q Consensus       463 ~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  540 (632)
                      ++.+...+.+......  ......+......+...++.++|...+.......... ....+..+...+...++++.+...
T Consensus       146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~  224 (291)
T COG0457         146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-DAEALLNLGLLYLKLGKYEEALEY  224 (291)
T ss_pred             HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-chHHHHHhhHHHHHcccHHHHHHH
Confidence            7777777777654221  1123333333444566777777777777766542211 244555566666777777788877


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      +....... +.....+..+...+...|..+++...+....+...
T Consensus       225 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         225 YEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            77777652 22244455555555566677788877777776654

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.87  E-value=0.91  Score=43.21  Aligned_cols=130  Identities=17%  Similarity=0.318  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh--cC----ChhHHHHHHHHHHhCC---CCcCHHhHHHHHHHHHhcCC-
Q 006744          184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA--ER----NLDACLRVWEEMKKDL---VEADVMAYVTLIMGLCKGGR-  253 (632)
Q Consensus       184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~-  253 (632)
                      +++...+++.|.+.|.+.+..+|-+..-.+..  ..    ...+|.++|+.|++..   -.++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667788899999898888776654433333  22    3457888899998764   12445556555543  2233 


Q ss_pred             ---hhHHHHHHHHHHHcCCcccHH--hHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744          254 ---VVRGHELFREMKENGILIDRA--IYGVLIEGLVGEGK--VGKACDLLKDLVDSGYRADLGIYNSII  315 (632)
Q Consensus       254 ---~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~~~~~~~li  315 (632)
                         .+.+..+|+.+.+.|+..+..  ....++..+.....  +..+.++++.+.+.|++.....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence               355666777777766654322  22222222211111  345666677777777666666555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.79  E-value=0.59  Score=45.16  Aligned_cols=63  Identities=16%  Similarity=0.037  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      +..+..++.+.+++.+|++..++.+..+ ++|......-..+|...|+++.|+..|+++++..+
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P  322 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEP  322 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence            3345555555555556665555555553 44555555555555556666666666666655544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.62  E-value=3.4  Score=37.58  Aligned_cols=157  Identities=18%  Similarity=0.108  Sum_probs=89.2

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHH-HHHhcCChhhHHHHHHHHhhCCC--CcCHHHHHHHHHHHHHcCCHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMG-ALLEIGEVKKALYLFGKMRGLNL--EVNSLSFSIAIQCHVESGDILE  465 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~t~~~ll~~~~~~g~~~~  465 (632)
                      ...+++..+.+.+.........+......... .+...|+++.|...+.+......  ......+......+...++.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (291)
T COG0457         106 EALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEE  185 (291)
T ss_pred             HHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHH
Confidence            33344445555555544433222222222223 56677777777777777644211  1122333333444566777888


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT  545 (632)
Q Consensus       466 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  545 (632)
                      +...+....+.........+..+...+...++++.|...+.........  ....+..+...+...+..+.+...+.+..
T Consensus       186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (291)
T COG0457         186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEALYNLALLLLELGRYEEALEALEKAL  263 (291)
T ss_pred             HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence            8888777776432213566677777777778888888888877654222  12333334444446667888888887777


Q ss_pred             hC
Q 006744          546 QE  547 (632)
Q Consensus       546 ~~  547 (632)
                      +.
T Consensus       264 ~~  265 (291)
T COG0457         264 EL  265 (291)
T ss_pred             Hh
Confidence            65

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.62  E-value=0.88  Score=39.31  Aligned_cols=94  Identities=19%  Similarity=0.150  Sum_probs=67.8

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCCh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006744          491 GLCKIGEIDAAMMLVRDCLGNVASGPT---EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG  567 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g  567 (632)
                      -+.+.|++++|..-|..+++.++..+.   .+.|..-..++.+.+.++.|++-..+.++.+ +........-..+|.+..
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~e  182 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKME  182 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhh
Confidence            466778888888888888776654443   2345555667778888888888888888775 323334444456788888


Q ss_pred             CHHHHHHHHHHHHHCCCC
Q 006744          568 TLEEARKVFTNLRERKLL  585 (632)
Q Consensus       568 ~~~~A~~~~~~m~~~~~~  585 (632)
                      ++++|++-|+.+++.++.
T Consensus       183 k~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  183 KYEEALEDYKKILESDPS  200 (271)
T ss_pred             hHHHHHHHHHHHHHhCcc
Confidence            999999999999888754

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=94.59  E-value=4.1  Score=38.27  Aligned_cols=99  Identities=16%  Similarity=0.138  Sum_probs=62.2

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHhh----CCCCcCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCH----
Q 006744          412 VPIYNILMGALLEIGEVKKALYLFGKMRG----LNLEVNSLSFSIAIQ-CHVESGDILEACECHNKIIEMSQVPSV----  482 (632)
Q Consensus       412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~----  482 (632)
                      ..++-.....||+.|+-+.|++.+.+..+    .|.+.|...+.+-+. .|....-+.+-.+-.+.+.+.|...+.    
T Consensus       104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl  183 (393)
T KOG0687|consen  104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL  183 (393)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence            44577777889999999988887766543    466777665554443 233333445555556666677766553    


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNV  512 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  512 (632)
                      .+|..+-  +....++.+|-.+|-+.+...
T Consensus       184 KvY~Gly--~msvR~Fk~Aa~Lfld~vsTF  211 (393)
T KOG0687|consen  184 KVYQGLY--CMSVRNFKEAADLFLDSVSTF  211 (393)
T ss_pred             HHHHHHH--HHHHHhHHHHHHHHHHHcccc
Confidence            3444433  234467889999888876543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.46  E-value=2.7  Score=35.59  Aligned_cols=133  Identities=18%  Similarity=0.191  Sum_probs=72.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHH---hHHHHH
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEA-DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRA---IYGVLI  280 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li  280 (632)
                      .|..-++ +.+.+..++|+.-|..+.+.|..- .+-..-.+.......|+...|...|+++-.....|-..   .-..-.
T Consensus        61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa  139 (221)
T COG4649          61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA  139 (221)
T ss_pred             HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence            3444333 456666777777777777665321 11111122334456677777777777776554433322   111112


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      -.+...|.++.+..-.+-+...+-..-...-..|.-+-.+.|++.+|.++|..+....
T Consensus       140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence            2345566677666666665554443344445556666667777777777777766543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.46  E-value=0.89  Score=36.22  Aligned_cols=91  Identities=16%  Similarity=0.130  Sum_probs=52.2

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcC
Q 006744          491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV---ICSAIISGMCKHG  567 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l~~~~~~~g  567 (632)
                      ++...|+++.|++.|.+.+...+  .....||.-..++--.|+.++|++=+++..+..-.....   .|..-...|...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            34556666666666666554322  233456666666666666666666666666542111221   2333334566777


Q ss_pred             CHHHHHHHHHHHHHCC
Q 006744          568 TLEEARKVFTNLRERK  583 (632)
Q Consensus       568 ~~~~A~~~~~~m~~~~  583 (632)
                      +.+.|+.-|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            7777777777776665

>PRK11906 transcriptional regulator; Provisional

Probab=94.41  E-value=3.2  Score=41.42  Aligned_cols=81  Identities=10%  Similarity=0.012  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE  543 (632)
Q Consensus       464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  543 (632)
                      .+|.++-++..+.+ .-|......+..++...|+++.|...|++.....+..++.  |......+...|+.++|.+.+++
T Consensus       321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~--~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL--YYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH--HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444444444433 2344444445554455555555555555554332222222  22233334445555555555555


Q ss_pred             HHhC
Q 006744          544 MTQE  547 (632)
Q Consensus       544 m~~~  547 (632)
                      ..+.
T Consensus       398 alrL  401 (458)
T PRK11906        398 SLQL  401 (458)
T ss_pred             Hhcc
Confidence            4443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.37  E-value=4  Score=37.24  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=34.3

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCCCCCH---hcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          314 IIGGLCRVKQFDKAYKLFEVTVQDDLAPDF---STVNPLLVCCAEMGRMDNFFKLLAQMEK  371 (632)
Q Consensus       314 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~  371 (632)
                      +.+.|.+.|.+..|..-+++|.+. ..-+.   ..+-.+..+|...|-.++|...-.-+..
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            345677777777777777777765 22122   2344455667777776666665544433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.30  E-value=4.4  Score=38.21  Aligned_cols=152  Identities=10%  Similarity=0.014  Sum_probs=78.2

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc---CCcccHHhHHHHHHHHHhcCCHHH
Q 006744          215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN---GILIDRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~  291 (632)
                      ..|+..+|-..++++.+. .+.|..+++..=++|.-+|+.+.-...++++.-.   +++....+...+.-++..+|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            455666666666666654 2445566666666666666666666666665443   222112222233334455666666


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC---CCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA---PDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      |++.-++..+.+.. |...-.++...+-.+|++.++.++..+-...--.   .-..-|--..-.+...+.++.|+++|+.
T Consensus       194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~  272 (491)
T KOG2610|consen  194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR  272 (491)
T ss_pred             HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence            66666666554432 5555555666666666666666665543211000   0011121222233444666666666654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.23  E-value=4.7  Score=37.54  Aligned_cols=57  Identities=18%  Similarity=0.131  Sum_probs=40.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      .......|++.+|..+|......... +...-..++.+|...|+.+.|..++..+...
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~  197 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ  197 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence            44556678888888888887776444 4556667778888888888888888776653

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.90  E-value=3.5  Score=34.89  Aligned_cols=123  Identities=16%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHHH--HHHHcCCH
Q 006744          389 GKEERIMMALDVFEELKGKGYSS--VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAIQ--CHVESGDI  463 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~--~~~~~g~~  463 (632)
                      .+.+..++|..-|..+.+.|..+  +-.--.+.....+.|+...|...|++.-...-.|-.. -...|-.  .+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            34455556666666665555442  2222233344556677777777777765543333222 1111111  23345556


Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      +......+-+...+-..-...-..|.-+-.+.|++.+|.+.|+.+..+
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            655555554443332222333445555556677777777777666554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.68  E-value=11  Score=39.91  Aligned_cols=182  Identities=12%  Similarity=0.046  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHhCCCCcCHHhHHHHH----HH-HHhcCChhHHHHHHHHHHh-------CCCCcCHHhHHHHHHHHHhc
Q 006744          184 IAEMLEILEKMRRNLCKPDVFAYTAMI----RV-LAAERNLDACLRVWEEMKK-------DLVEADVMAYVTLIMGLCKG  251 (632)
Q Consensus       184 ~~~a~~~~~~m~~~~~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~  251 (632)
                      ...|...++...+.|.   ...-..+.    .+ +....+.+.|+..|+...+       .|   +......+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            3456666666555532   22211111    12 3455677788888777765       33   233455556666554


Q ss_pred             C-----ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH--ccCC
Q 006744          252 G-----RVVRGHELFREMKENGILIDRAIYGVLIEGLVG-EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC--RVKQ  323 (632)
Q Consensus       252 g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~--~~g~  323 (632)
                      .     +.+.|..++.+..+.|.. +...+-..+..... ..+...|.++|....+.|.. ....+..++....  -..+
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~  379 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERN  379 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCC
Confidence            3     456677777777776644 44433333322222 24567777777777777653 3332222222222  3345


Q ss_pred             HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006744          324 FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFS  375 (632)
Q Consensus       324 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  375 (632)
                      .+.|..++.+..+.| .|...--...+..+.. +.++.+.-.+..+...|.+
T Consensus       380 ~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  380 LELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE  429 (552)
T ss_pred             HHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence            677777777777766 2221111222233333 5666666666665555543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.58  E-value=6.9  Score=37.20  Aligned_cols=134  Identities=10%  Similarity=0.059  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC--------CCCcCH-----HhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCC
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKD--------LVEADV-----MAYVTLIMGLCKGGRV---VRGHELFREMKENGI  269 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~--------~~~p~~-----~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~  269 (632)
                      |+.-...+.+..+++.|..++++..+.        ...++.     .++..++.+|...+..   ++|..+++.+.....
T Consensus        39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~  118 (278)
T PF08631_consen   39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYG  118 (278)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC
Confidence            555445444443777777766654332        112232     3566677777776654   455566666644322


Q ss_pred             cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH---HccCCHHHHHHHHHHHHhCCCCCC
Q 006744          270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL---CRVKQFDKAYKLFEVTVQDDLAPD  342 (632)
Q Consensus       270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~~~p~  342 (632)
                      . ...++..-+..+.+.++.+++.+++.+|+..-.. ....+..++..+   .. .....|...++.+....+.|.
T Consensus       119 ~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  119 N-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             C-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCC
Confidence            2 3556656667777788888888888888875221 334444444444   33 223455555655554444433

It is also involved in sporulation [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.40  E-value=2.9  Score=34.44  Aligned_cols=55  Identities=20%  Similarity=0.244  Sum_probs=25.6

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          529 CRSGEAEKIIEVLNEMTQEGCPP---NEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       529 ~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      .+.|++++|++.|+.+... ++-   ....--.|+.+|.+.|++++|...+++.++..+
T Consensus        21 l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP   78 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP   78 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3444555555555554443 111   122333445555555555555555555555543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.38  E-value=4.5  Score=34.50  Aligned_cols=31  Identities=10%  Similarity=0.181  Sum_probs=17.1

Q ss_pred             HHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744          191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLDA  221 (632)
Q Consensus       191 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  221 (632)
                      +..+.+.++.++...|..+++.+.+.|++..
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            3444445555666666666666666665433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.19  E-value=6.2  Score=35.56  Aligned_cols=148  Identities=12%  Similarity=0.038  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744          450 FSIAIQCHVESGDILEACECHNKIIEM--SQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI  525 (632)
Q Consensus       450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  525 (632)
                      |......|...|..+.|-..+++.-+.  ++.|+  ...|..-+..+...++...|.+++.                ...
T Consensus        94 ~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g----------------k~s  157 (308)
T KOG1585|consen   94 YEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG----------------KCS  157 (308)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH----------------Hhh
Confidence            444455677777777766666554431  23343  2233333333333333333333333                345


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCCChhhHHHHHHH
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQE----GCPPNE-VICSAIISGMCKHGTLEEARKVFTNLRERK-LLTEANTIVYDEILIE  599 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~~~l~~~  599 (632)
                      ..+.+..++++|-..+.+-...    .-.++. ..|...|-.+....++..|.+.++.--..+ ...+.+..+..+|+..
T Consensus       158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a  237 (308)
T KOG1585|consen  158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA  237 (308)
T ss_pred             hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence            5566666666665544432211    111222 345566667778889999999998865443 3333456678888887


Q ss_pred             HhhhchhHHHHhhhh
Q 006744          600 HMKKKTADLVLSGLK  614 (632)
Q Consensus       600 ~~~~~~~~~v~~~l~  614 (632)
                      |-. +|.+.+-+.+.
T Consensus       238 yd~-gD~E~~~kvl~  251 (308)
T KOG1585|consen  238 YDE-GDIEEIKKVLS  251 (308)
T ss_pred             hcc-CCHHHHHHHHc
Confidence            766 66666666554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.16  E-value=5.1  Score=34.93  Aligned_cols=99  Identities=14%  Similarity=0.050  Sum_probs=64.2

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHhHHH
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL--SFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAAYNC  487 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~  487 (632)
                      ..+..+...|++.|+.++|++.|.++.+....+...  .+-.+|......+++..+.....++...   +..++...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            457888888999999999999999888765444433  4667777788888888888877766543   22222111111


Q ss_pred             HHH--HHHhcCCHHHHHHHHHHHhhc
Q 006744          488 LTK--GLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       488 li~--~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      ...  .+...+++.+|-+.|-+....
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCcC
Confidence            111  233567888888877665433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.10  E-value=8.4  Score=36.79  Aligned_cols=153  Identities=14%  Similarity=0.177  Sum_probs=83.9

Q ss_pred             hhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCC-
Q 006744          428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE--SG----DILEACECHNKIIEMSQV---PSVAAYNCLTKGLCKIGE-  497 (632)
Q Consensus       428 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--~g----~~~~a~~~~~~~~~~~~~---p~~~~~~~li~~~~~~g~-  497 (632)
                      +++.+.+++.|.+.|++-+..+|.+.......  ..    ...++..+|+.|.+...-   ++-..+..|+..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34556677788888877777666553333322  22    245678888888875322   333444444333  3333 


Q ss_pred             ---HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---
Q 006744          498 ---IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG---EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT---  568 (632)
Q Consensus       498 ---~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---  568 (632)
                         .+++..+|+.+.+.+-.+-|..-+.+-+.+++...   ....+.++++.+.+.|++.....|..++-...-.+.   
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence               24556666666553222233333333344443221   255788899999999988888777766544433333   


Q ss_pred             -HHHHHHHHHHHHHC
Q 006744          569 -LEEARKVFTNLRER  582 (632)
Q Consensus       569 -~~~A~~~~~~m~~~  582 (632)
                       .+...++.+.+.+.
T Consensus       236 ~~~~i~ev~~~L~~~  250 (297)
T PF13170_consen  236 IVEEIKEVIDELKEQ  250 (297)
T ss_pred             HHHHHHHHHHHHhhC
Confidence             33344444444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.00  E-value=2.3  Score=43.29  Aligned_cols=100  Identities=14%  Similarity=0.134  Sum_probs=59.5

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHH
Q 006744          213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA  292 (632)
Q Consensus       213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  292 (632)
                      ..+.|+++.|.++..+..      +..-|..|.++....+++..|.+.|.....         |..|+-.+...|+.+..
T Consensus       647 al~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l  711 (794)
T KOG0276|consen  647 ALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGL  711 (794)
T ss_pred             hhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHH
Confidence            446677777766655432      455677777777777777777777665433         44555566666666655


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHH
Q 006744          293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEV  333 (632)
Q Consensus       293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  333 (632)
                      ..+-....+.|.. |..     .-+|...|+++++.+++.+
T Consensus       712 ~~la~~~~~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  712 AVLASLAKKQGKN-NLA-----FLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHHHHhhccc-chH-----HHHHHHcCCHHHHHHHHHh
Confidence            5555555555543 222     2245556777777666654

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=92.89  E-value=0.36  Score=50.12  Aligned_cols=17  Identities=0%  Similarity=-0.054  Sum_probs=8.1

Q ss_pred             CHhcHHHHHHHHHhcCC
Q 006744          342 DFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       342 ~~~~~~~ll~~~~~~~~  358 (632)
                      |..+|..=|+.+++..+
T Consensus       837 Na~afgF~is~L~kL~d  853 (1102)
T KOG1924|consen  837 NAQAFGFNISFLCKLRD  853 (1102)
T ss_pred             cchhhccchHHHHhhcc
Confidence            34455444555554443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.88  E-value=0.34  Score=30.69  Aligned_cols=34  Identities=3%  Similarity=-0.134  Sum_probs=15.4

Q ss_pred             HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHH
Q 006744          384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNI  417 (632)
Q Consensus       384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  417 (632)
                      +...|...|++++|+++|+++.+..+.+...|..
T Consensus         7 la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~   40 (44)
T PF13428_consen    7 LARAYRRLGQPDEAERLLRRALALDPDDPEAWRA   40 (44)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            3334444444444444444444444444444433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.87  E-value=11  Score=37.36  Aligned_cols=63  Identities=14%  Similarity=0.090  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      .+|..++..+.+.|.++.|...+..+...+...   .......-....-..|+..+|...++...+
T Consensus       147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555555555555555555555554432111   122222223334444555555555555544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK11906 transcriptional regulator; Provisional

Probab=92.85  E-value=11  Score=37.67  Aligned_cols=148  Identities=11%  Similarity=0.064  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHhC-CCCcC-HHhHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc
Q 006744          183 RIAEMLEILEKMRRN-LCKPD-VFAYTAMIRVLAA---------ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG  251 (632)
Q Consensus       183 ~~~~a~~~~~~m~~~-~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~  251 (632)
                      ..+.|..+|.+.... ...|+ ...|..+...+..         ..+..+|.++-+...+.+ .-|..+...+..+..-.
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            345677777776611 23343 3333333332221         234456777777777765 45777777777777777


Q ss_pred             CChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHH
Q 006744          252 GRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKL  330 (632)
Q Consensus       252 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~  330 (632)
                      ++++.|..+|++....+.. ...+|....-.+.-.|+.++|.+.+++..+..+.. ........++.|+..+ .++|+++
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~  429 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL  429 (458)
T ss_pred             cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence            7888888888888776543 45555555556666788888888888866653221 1223333344665544 5666666


Q ss_pred             HHH
Q 006744          331 FEV  333 (632)
Q Consensus       331 ~~~  333 (632)
                      |-+
T Consensus       430 ~~~  432 (458)
T PRK11906        430 YYK  432 (458)
T ss_pred             Hhh
Confidence            643

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.82  E-value=1.8  Score=40.35  Aligned_cols=77  Identities=23%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCcccHHhHHHH
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-----NGILIDRAIYGVL  279 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~l  279 (632)
                      ++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            44555555555555555555555555443 33555555555555555555555555555433     4555555554444


Q ss_pred             HHH
Q 006744          280 IEG  282 (632)
Q Consensus       280 i~~  282 (632)
                      ...
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.82  E-value=0.41  Score=30.31  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=12.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          276 YGVLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      +..+...|...|++++|+++|+++++.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            334444444455555555555444444

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=92.46  E-value=32  Score=41.86  Aligned_cols=318  Identities=11%  Similarity=0.029  Sum_probs=162.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHH----HHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744          243 TLIMGLCKGGRVVRGHELFREM----KENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL  318 (632)
Q Consensus       243 ~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  318 (632)
                      ++..+-.+.+.+.+|.-.++.-    ++.  ......|..+...|+..++.|....+......     +. ....-|...
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~-sl~~qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DP-SLYQQILEH 1459 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Cc-cHHHHHHHH
Confidence            3444556677888888888773    222  11234555666688888988888877764222     11 223345566


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH
Q 006744          319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL  398 (632)
Q Consensus       319 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  398 (632)
                      ...|++..|...|+.+.+.+. +...+++.++......|.++......+.......+......+.-+.+--+.++++..+
T Consensus      1460 e~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred             HhhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhh
Confidence            778999999999998886542 2366777777777777777776665554444333333334444444445566666665


Q ss_pred             HHHHHHHhCCCCChhHHHHH--HHHHHhcC--ChhhHHHHHHHHhhCCCCc---------CHHHHHHHHHHHHHcCCHHH
Q 006744          399 DVFEELKGKGYSSVPIYNIL--MGALLEIG--EVKKALYLFGKMRGLNLEV---------NSLSFSIAIQCHVESGDILE  465 (632)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~A~~~~~~m~~~~~~p---------~~~t~~~ll~~~~~~g~~~~  465 (632)
                      ....   ..   +...|...  +....+..  +.-.-.+..+.+.+.-+.|         -...|..++....-.    +
T Consensus      1539 ~~l~---~~---n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1539 SYLS---DR---NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred             hhhh---cc---cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence            5544   11   22233332  22222221  1111112222222211111         011222332221111    0


Q ss_pred             HHHHHHHHHHCCCCCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC----C-CCChHHHHHHHHHHHHHcCCH
Q 006744          466 ACECHNKIIEMSQVPS------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV----A-SGPTEFKYALTILHVCRSGEA  534 (632)
Q Consensus       466 a~~~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~~  534 (632)
                      -....+...  +..++      ..-|..-+..-....+..+-+--+++.+-..    + ..--..+|-...+..-+.|.+
T Consensus      1609 l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1609 LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred             HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence            111111111  11111      1112222221111111222222222211111    1 112334576677777778999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          535 EKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       535 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      +.|...+-.+.+.+ .  +..+--...-+...|+...|+.++++-.+...
T Consensus      1687 q~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             HHHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            99988887777765 2  34555667778899999999999999887653

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.20  E-value=1.8  Score=40.34  Aligned_cols=81  Identities=20%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-----SGYRADLGIYN  312 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~  312 (632)
                      ..++..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            346677788888889999999999999887655 888999999999999999999999988775     58888888887


Q ss_pred             HHHHHHH
Q 006744          313 SIIGGLC  319 (632)
Q Consensus       313 ~li~~~~  319 (632)
                      .......
T Consensus       232 ~y~~~~~  238 (280)
T COG3629         232 LYEEILR  238 (280)
T ss_pred             HHHHHhc
Confidence            7766643

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.15  E-value=19  Score=38.44  Aligned_cols=151  Identities=9%  Similarity=0.096  Sum_probs=84.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744          174 VPELMDSQGRIAEMLEILEKMRRNLCKP---DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK  250 (632)
Q Consensus       174 l~~~~~~~g~~~~a~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  250 (632)
                      -++.+.+.+.+++|+.+-+.....  .+   -...+..+|..+.-.|++++|-.+.-.|..    -+..-|..-+..+..
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e  435 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAE  435 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcc
Confidence            344555556666666665544332  22   345677888888999999999888888874    356666666666666


Q ss_pred             cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH-----------------HCCCCCCHhhHHH
Q 006744          251 GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV-----------------DSGYRADLGIYNS  313 (632)
Q Consensus       251 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----------------~~g~~~~~~~~~~  313 (632)
                      .++....-.+   +.......+..+|..++..+.. .+...-.++..+..                 +.... +...-..
T Consensus       436 ~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se-~~~L~e~  510 (846)
T KOG2066|consen  436 LDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSE-STALLEV  510 (846)
T ss_pred             ccccchhhcc---CCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhcc-chhHHHH
Confidence            6655433222   2222223455567666666655 22222222111100                 00011 2223334


Q ss_pred             HHHHHHccCCHHHHHHHHHHHH
Q 006744          314 IIGGLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       314 li~~~~~~g~~~~A~~~~~~m~  335 (632)
                      |+..|...+++..|+.++-...
T Consensus       511 La~LYl~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  511 LAHLYLYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             HHHHHHHccChHHHHHHHHhcc
Confidence            7777778888888887776554

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.12  E-value=7.5  Score=33.83  Aligned_cols=94  Identities=13%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhcCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006744          489 TKGLCKIGEIDAAMMLVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG  567 (632)
Q Consensus       489 i~~~~~~g~~~~A~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g  567 (632)
                      ...+..+|++++|...++..+...... -....--.|.......|.+++|+.+++...+.++  .......-.+++...|
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg  173 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKG  173 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcC
Confidence            456778888888888888766431110 1111111255566677899999998887766543  2334455677888999


Q ss_pred             CHHHHHHHHHHHHHCCC
Q 006744          568 TLEEARKVFTNLRERKL  584 (632)
Q Consensus       568 ~~~~A~~~~~~m~~~~~  584 (632)
                      +.++|+.-|+..++.+.
T Consensus       174 ~k~~Ar~ay~kAl~~~~  190 (207)
T COG2976         174 DKQEARAAYEKALESDA  190 (207)
T ss_pred             chHHHHHHHHHHHHccC
Confidence            99999999999988873

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.03  E-value=10  Score=35.32  Aligned_cols=145  Identities=9%  Similarity=0.081  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHh-CCCCcCHHhHHHHHHHHHhc-C-ChhHHHHHHHHHHH-cCCcccHHhHHHHHH
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKK-DLVEADVMAYVTLIMGLCKG-G-RVVRGHELFREMKE-NGILIDRAIYGVLIE  281 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~-~~~~p~~~~~~~li~  281 (632)
                      |..|+.   ++..+.+|+++|+.... ..+--|......+++..... + ....--++.+-+.. .|-.++..+...+++
T Consensus       134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~  210 (292)
T PF13929_consen  134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE  210 (292)
T ss_pred             HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence            555443   34456677777774332 22445777777777776652 2 22222333333332 345567778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHH-----HHhCCCCCCHhcHHHHHHHH
Q 006744          282 GLVGEGKVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDKAYKLFEV-----TVQDDLAPDFSTVNPLLVCC  353 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~~~~p~~~~~~~ll~~~  353 (632)
                      .+++.+++.+-.++++..... +..-|...|..+|....+.|+..-..++.++     +.+.++..+...-..+-+.+
T Consensus       211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF  288 (292)
T PF13929_consen  211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF  288 (292)
T ss_pred             HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence            888888888888888877765 5666888888888888888888877777654     22344554444444443333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.86  E-value=3.5  Score=33.98  Aligned_cols=52  Identities=10%  Similarity=0.130  Sum_probs=26.0

Q ss_pred             CCHHHHHHHHHHHHhCCC--CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744          182 GRIAEMLEILEKMRRNLC--KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL  233 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  233 (632)
                      |++++|.+.|+.+..+-+  .-...+--.|+.+|.+.+++++|...+++.++..
T Consensus        24 ~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   24 GNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             CCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            444555555555544311  1122334445555666666666666666665543

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=91.82  E-value=11  Score=35.05  Aligned_cols=163  Identities=15%  Similarity=0.102  Sum_probs=80.9

Q ss_pred             hhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHH---------HHHHH---HhCCC
Q 006744          132 PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLE---------ILEKM---RRNLC  199 (632)
Q Consensus       132 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~---------~~~~m---~~~~~  199 (632)
                      ...|+++|-.+..+.|-+-   +-+.++.++....+...|..++....-+  ...|+.         .+++-   --.++
T Consensus       149 s~KA~ELFayLv~hkgk~v---~~~~~ie~lwpe~D~kka~s~lhTtvyq--lRKaLs~L~~ne~vts~d~~Ykld~~~~  223 (361)
T COG3947         149 SRKALELFAYLVEHKGKEV---TSWEAIEALWPEKDEKKASSLLHTTVYQ--LRKALSRLNANEAVTSQDRKYKLDAGLP  223 (361)
T ss_pred             hhHHHHHHHHHHHhcCCcc---cHhHHHHHHccccchhhHHHHHHHHHHH--HHHHhchhccCceEEEcCCceEEecCCc
Confidence            4579999999988776433   3466888888888888888776644311  000100         00000   01123


Q ss_pred             CcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCcC----------------HHhHHHHHHHHHhcCChhHHHHHHH
Q 006744          200 KPDVFAYTAMIRVLAA-ERNLDACLRVWEEMKKDLVEAD----------------VMAYVTLIMGLCKGGRVVRGHELFR  262 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~  262 (632)
                      .-|+.-|...++..-. +-.++++.++....+..-++-.                ..+++.....|..+|.+.+|.++.+
T Consensus       224 k~Dv~e~es~~rqi~~inltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~q  303 (361)
T COG3947         224 KYDVQEYESLARQIEAINLTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQ  303 (361)
T ss_pred             cccHHHHHHHhhhhhccccCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3444445554443322 2234444444444322111100                1122333445555566666666655


Q ss_pred             HHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          263 EMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV  300 (632)
Q Consensus       263 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  300 (632)
                      .....+. .+...+-.|+..+...||--.|.+-++.+.
T Consensus       304 r~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         304 RALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             HHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            5555432 245555555566666665555555554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.73  E-value=6.8  Score=33.03  Aligned_cols=52  Identities=17%  Similarity=0.178  Sum_probs=26.3

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          458 VESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       458 ~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      .+.++.+.+..++..+.-.... +...++.  ...+...|++++|+++|+++.+.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhcc
Confidence            3455666666666666543211 1122222  22345566666666666665443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.60  E-value=18  Score=37.25  Aligned_cols=121  Identities=13%  Similarity=0.125  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHH
Q 006744          412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV--PSVAAYNCLT  489 (632)
Q Consensus       412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~li  489 (632)
                      ...|+.-+.--.+.|+++.+.-+|++..-- +.-=...|-..+.-....|+.+.|..++....+-..+  |....+.+.+
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            445666677777777777777777666421 1111122333333333447777776666655543332  2222222222


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHH-HHHHHHHHcCCHHHHH
Q 006744          490 KGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYA-LTILHVCRSGEAEKII  538 (632)
Q Consensus       490 ~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~  538 (632)
                        .-..|+++.|..+++.+....   |+..... .-+....+.|+.+.+.
T Consensus       376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~  420 (577)
T KOG1258|consen  376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDAN  420 (577)
T ss_pred             --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhh
Confidence              234567777777777766543   3322211 1122333556665555

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=91.53  E-value=9.4  Score=33.78  Aligned_cols=199  Identities=13%  Similarity=0.060  Sum_probs=110.5

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE  468 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  468 (632)
                      -..|-+.-|.--|.......+.-..+||-+.-.+...|+++.|.+.|+...+....-+-...|.-| ++--.|++..|.+
T Consensus        76 DSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~  154 (297)
T COG4785          76 DSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQD  154 (297)
T ss_pred             hhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHH
Confidence            344555666666666666666667788888888888999999999988887754222222222222 2334677888877


Q ss_pred             HHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHH-HHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          469 CHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLV-RDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       469 ~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      -+...-+.... |-...|-.++.   ..-+..+|..-+ ++..+     .|..-|...|..+.-. +.. ...+++++..
T Consensus       155 d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLg-kiS-~e~l~~~~~a  224 (297)
T COG4785         155 DLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLG-KIS-EETLMERLKA  224 (297)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHh-hcc-HHHHHHHHHh
Confidence            77666654322 22223322222   233455555433 33221     2222333223332211 110 1122222222


Q ss_pred             CCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744          547 EGCPPN-------EVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK  602 (632)
Q Consensus       547 ~g~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~  602 (632)
                      - -..+       ..||-.|.+-+...|+.++|..+|+-.+..++-   +.+-|...+-+.++
T Consensus       225 ~-a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy---nfVE~RyA~~EL~~  283 (297)
T COG4785         225 D-ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY---NFVEHRYALLELSL  283 (297)
T ss_pred             h-ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHH
Confidence            1 1111       457888889999999999999999999887764   44455555555544

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=91.27  E-value=0.3  Score=28.85  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=25.2

Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744          401 FEELKGKGYSSVPIYNILMGALLEIGEVKKAL  432 (632)
Q Consensus       401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  432 (632)
                      |++..+.++.+..+|+.+...|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45556666668888999999999999988875

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.04  E-value=0.58  Score=28.03  Aligned_cols=26  Identities=12%  Similarity=0.079  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~  580 (632)
                      +|..|...|.+.|++++|.+++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677888888888888888888744

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.01  E-value=0.53  Score=28.19  Aligned_cols=24  Identities=17%  Similarity=0.210  Sum_probs=15.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDC  508 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~  508 (632)
                      |..|...|.+.|++++|+++|++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            455666666666676666666663

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.76  E-value=4  Score=35.59  Aligned_cols=60  Identities=8%  Similarity=0.072  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC--HHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD--VMAYVTLIMGLCKGGRVVRGHELFREM  264 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m  264 (632)
                      .+..+...|++.|+.+.|++.|.++.+....+.  ...+-.+|......+++..+...+.+.
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345555555555555555555555554432221  223344444445555555555544443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=90.65  E-value=16  Score=35.02  Aligned_cols=232  Identities=14%  Similarity=0.087  Sum_probs=109.2

Q ss_pred             hcCChhHHHHHHHHHHhCC--CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--CCc---ccHHhHHHHHHHHHhcC
Q 006744          215 AERNLDACLRVWEEMKKDL--VEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN--GIL---IDRAIYGVLIEGLVGEG  287 (632)
Q Consensus       215 ~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~---p~~~~~~~li~~~~~~g  287 (632)
                      ...+.++|+..|.+....-  ..--..+|..+..+.++.|.+++++..--.-++.  ...   --...|..+..++-+.-
T Consensus        18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~   97 (518)
T KOG1941|consen   18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC   97 (518)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666665544321  0112345666677777777776665432211110  000   01224444555555555


Q ss_pred             CHHHHHHHHHHHHHC-CCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-----CCCCHhcHHHHHHHHHhcCC
Q 006744          288 KVGKACDLLKDLVDS-GYRA---DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD-----LAPDFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       288 ~~~~a~~~~~~m~~~-g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~  358 (632)
                      ++.+++.+-..-... |..+   .-...-+|..++.-.+.++++++.|+...+-.     .......|..+-..|.+..|
T Consensus        98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D  177 (518)
T KOG1941|consen   98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD  177 (518)
T ss_pred             HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence            555555554443321 1111   11223335566666667777777777655321     11223456666666666677


Q ss_pred             hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC---ChhHHHHHHHHHHhcCChhhHHHHH
Q 006744          359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS---SVPIYNILMGALLEIGEVKKALYLF  435 (632)
Q Consensus       359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~  435 (632)
                      ++++.-+..+..+.                            .+...-.++.   ...+.-.|..++-..|..-.|.+.-
T Consensus       178 ~~Kal~f~~kA~~l----------------------------v~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C  229 (518)
T KOG1941|consen  178 YEKALFFPCKAAEL----------------------------VNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECC  229 (518)
T ss_pred             hhHHhhhhHhHHHH----------------------------HHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHH
Confidence            76666555443221                            1000000000   0001122334455566666665555


Q ss_pred             HHHhh----CCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          436 GKMRG----LNLEV-NSLSFSIAIQCHVESGDILEACECHNKII  474 (632)
Q Consensus       436 ~~m~~----~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  474 (632)
                      ++..+    .|-.+ -......+.+.|...|+.+.|+.-|+...
T Consensus       230 ~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  230 EEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            55432    23121 12234455666777777777777666554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.53  E-value=26  Score=37.14  Aligned_cols=134  Identities=12%  Similarity=0.057  Sum_probs=84.6

Q ss_pred             HHhHHHHHHHHHhcC-----ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh-cCChhHHHHHHHHHHHcCCcccHHhH
Q 006744          203 VFAYTAMIRVLAAER-----NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK-GGRVVRGHELFREMKENGILIDRAIY  276 (632)
Q Consensus       203 ~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~  276 (632)
                      .....-+..+|.+..     +.+.|+.+|...-+.| .|+...+-..+.-... ..+...|.++|....+.|.. ....+
T Consensus       288 ~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~  365 (552)
T KOG1550|consen  288 PPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYR  365 (552)
T ss_pred             CccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHH
Confidence            335666667776643     6778999999988887 4555544333333333 24678999999999998865 33333


Q ss_pred             HHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006744          277 GVLIEGLV--GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA  340 (632)
Q Consensus       277 ~~li~~~~--~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  340 (632)
                      ..++....  -..+.+.|..++.+..+.|. |....-...+..+.. +.++.+.-.+..+.+.|..
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE  429 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence            33332222  34578999999999999873 332222233444444 7788887777777666543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.53  E-value=0.066  Score=45.03  Aligned_cols=53  Identities=9%  Similarity=0.210  Sum_probs=25.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006744          280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFE  332 (632)
Q Consensus       280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  332 (632)
                      +..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            34444445555555555555544433345555555555555555555555444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.46  E-value=21  Score=36.02  Aligned_cols=182  Identities=10%  Similarity=0.047  Sum_probs=122.6

Q ss_pred             CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH
Q 006744          375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI  454 (632)
Q Consensus       375 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll  454 (632)
                      ..+......++..++......-.+.+..+|..-+. +-..|-.++.+|... ..+.-..+|+++.+..  -|......-+
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~d--fnDvv~~ReL  138 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYD--FNDVVIGREL  138 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc--chhHHHHHHH
Confidence            34555666777788888888888888888877653 445688888888888 5577888888888753  4555555555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 006744          455 QCHVESGDILEACECHNKIIEMSQVP-----SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVC  529 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~  529 (632)
                      ..+...++.+.+..+|.++...-+..     -...|..|...-  ..+.|..+.+..++....+...-.+.+.-+-..|.
T Consensus       139 a~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         139 ADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            55555588888888888887653321     123444444321  34677777777777766666666666776777777


Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744          530 RSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM  563 (632)
Q Consensus       530 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  563 (632)
                      ...++++|++++..+.+.. ..|...-..++.-+
T Consensus       217 ~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         217 ENENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             cccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            7788888888888777764 44554444555443

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.38  E-value=30  Score=37.63  Aligned_cols=199  Identities=12%  Similarity=-0.020  Sum_probs=88.1

Q ss_pred             hhhcccHHHHHHHHHHHHhCCCC--------ChhHHHHHHH-HHHhcCChhhHHHHHHHHhhC----CCCcCHHHHHHHH
Q 006744          388 VGKEERIMMALDVFEELKGKGYS--------SVPIYNILMG-ALLEIGEVKKALYLFGKMRGL----NLEVNSLSFSIAI  454 (632)
Q Consensus       388 ~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~----~~~p~~~t~~~ll  454 (632)
                      .....++.+|..++.++...-..        -...|+.+-. .....|++++|.++.+.....    -..+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34455666666666554322111        0112333322 223356667777666655443    1233444555666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH-----HHHHhcCCH--HHHHHHHHHHhhc-----CCCCChHHHHH
Q 006744          455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLT-----KGLCKIGEI--DAAMMLVRDCLGN-----VASGPTEFKYA  522 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li-----~~~~~~g~~--~~A~~~~~~~~~~-----~~~~p~~~~~~  522 (632)
                      .+..-.|++++|..+.....+..-.-+...+....     ..+...|+.  .+....|......     ....+-..++.
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            66666777777777766665542223333322221     224455532  2222223222111     11112223333


Q ss_pred             HHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744          523 LTILHVCRS-GEAEKIIEVLNEMTQEGCPPNEVIC--SAIISGMCKHGTLEEARKVFTNLRERKLLT  586 (632)
Q Consensus       523 ~l~~~~~~~-g~~~~a~~~~~~m~~~g~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  586 (632)
                      .+..++.+. +...++..-++--......|-...+  ..|+......|+.++|...++++......+
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence            344444431 1112222222222221111111112  255666667788888887777776665444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=89.92  E-value=0.43  Score=28.19  Aligned_cols=31  Identities=19%  Similarity=0.222  Sum_probs=22.4

Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006744          542 NEMTQEGCPPNEVICSAIISGMCKHGTLEEAR  573 (632)
Q Consensus       542 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~  573 (632)
                      ++.++.. |-|...|..|...|...|++++|+
T Consensus         3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            4444443 667778888888888888888875

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=89.75  E-value=11  Score=31.74  Aligned_cols=84  Identities=14%  Similarity=0.084  Sum_probs=38.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHhH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          182 GRIAEMLEILEKMRRNLCKPDVFAY-TAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      ++.+++..+++.+.-.  .|..... ..-...+.+.|++.+|+.+|+++.+..  |.......|+..|....+-..-...
T Consensus        24 ~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~Wr~~   99 (160)
T PF09613_consen   24 GDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPSWRRY   99 (160)
T ss_pred             CChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChHHHHH
Confidence            4445555555555442  2322221 112233556777777777777765542  3333334444444433333333333


Q ss_pred             HHHHHHcCC
Q 006744          261 FREMKENGI  269 (632)
Q Consensus       261 ~~~m~~~~~  269 (632)
                      -+++.+.+.
T Consensus       100 A~evle~~~  108 (160)
T PF09613_consen  100 ADEVLESGA  108 (160)
T ss_pred             HHHHHhcCC
Confidence            344444443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.66  E-value=4.9  Score=37.61  Aligned_cols=103  Identities=17%  Similarity=0.102  Sum_probs=57.5

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006744          481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVA--SGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA  558 (632)
Q Consensus       481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  558 (632)
                      ...+...++..-....+++.++.++-++.....  ..++...|  .+.-++..=+.++++.++..=++.|+-||..++..
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~--~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH--TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH--HHHHHHHccChHHHHHHHhCcchhccccchhhHHH
Confidence            344444444444445566666665555432211  01221111  12223333456677777777777777777777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          559 IISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       559 l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      +++.+.+.+++.+|..+...|......
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~qe~~  167 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMMQEAF  167 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence            777777777777777776666655443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=89.50  E-value=15  Score=32.66  Aligned_cols=31  Identities=13%  Similarity=0.220  Sum_probs=17.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSG  303 (632)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  303 (632)
                      ..+||.|.--+...|+++.|.+.|+...+..
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD  129 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELD  129 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence            3455555555556666666666666655543

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=89.41  E-value=35  Score=36.85  Aligned_cols=192  Identities=13%  Similarity=0.037  Sum_probs=89.8

Q ss_pred             hhcccHHHHHHHHHHHHhCCCC-------C--hhHHHHHHHHHHhcCChhhHHHHHH--------HHhhCCCCcCHHHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYS-------S--VPIYNILMGALLEIGEVKKALYLFG--------KMRGLNLEVNSLSFS  451 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~-------~--~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~t~~  451 (632)
                      +-.+++..|...++.+.+....       .  ..++-...-.+...|+.+.|...|.        .....+...+..++.
T Consensus       372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila  451 (608)
T PF10345_consen  372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA  451 (608)
T ss_pred             HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence            4567777777777776643211       1  2222223333445688888888886        444444444444443


Q ss_pred             HHHH--HHHHcC--CHHH--HHHHHHHHHHC-CCCC--CHHhHHHH-HHHHHhc--CCHHHHHHHHHHHhhcC--CCCCh
Q 006744          452 IAIQ--CHVESG--DILE--ACECHNKIIEM-SQVP--SVAAYNCL-TKGLCKI--GEIDAAMMLVRDCLGNV--ASGPT  517 (632)
Q Consensus       452 ~ll~--~~~~~g--~~~~--a~~~~~~~~~~-~~~p--~~~~~~~l-i~~~~~~--g~~~~A~~~~~~~~~~~--~~~p~  517 (632)
                      .+=.  .+...+  +.++  +.++++.+... .-.+  +..++..+ +.++...  -...++...+.+.++..  ..+.+
T Consensus       452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~  531 (608)
T PF10345_consen  452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS  531 (608)
T ss_pred             HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence            3211  122222  2222  55666655432 1122  23333333 3333221  12235555555444332  11222


Q ss_pred             H---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C--CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 006744          518 E---FKYALTILHVCRSGEAEKIIEVLNEMTQEGCP-P--NEVICSA-----IISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       518 ~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~-p--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      .   ..++ ++..-.-.|+..+..+.........-+ +  ....|..     +.+.+...|+.++|.....+...
T Consensus       532 ~l~~~~L~-lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  532 QLLAILLN-LMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             hHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            2   2223 222222357777655554443321111 1  3445533     33446678999999888877653

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.37  E-value=34  Score=36.65  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCc---CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744          210 IRVLAAERNLDACLRVWEEMKKDLVEA---DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE  286 (632)
Q Consensus       210 i~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  286 (632)
                      |+-+.+.+.+++|+++-+.....  .+   -.......|..+...|++++|-...-.|...    +..-|..-+..+...
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL  436 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence            44567888899999887765433  33   3456777888888899999999888888765    555666666666666


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744          287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR  320 (632)
Q Consensus       287 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  320 (632)
                      ++......+   +.......+...|..++..+..
T Consensus       437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence            655433322   2222222455677777777766

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=88.86  E-value=29  Score=35.19  Aligned_cols=166  Identities=13%  Similarity=-0.014  Sum_probs=119.8

Q ss_pred             CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744          340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM  419 (632)
Q Consensus       340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  419 (632)
                      ..|.....+++..+...-.+.-++.+..+|...|-  +...+..++.+|... .-+.-..+|+++.+.+..++..-..|.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa  139 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA  139 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence            34666777888888888888888889899988764  456667777888777 667788899999888887777777777


Q ss_pred             HHHHhcCChhhHHHHHHHHhhCCCCc--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHH
Q 006744          420 GALLEIGEVKKALYLFGKMRGLNLEV--N---SLSFSIAIQCHVESGDILEACECHNKIIEM-SQVPSVAAYNCLTKGLC  493 (632)
Q Consensus       420 ~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~  493 (632)
                      ..|-+ ++.+.+...|......-++-  +   ...|..+...  -..+.+....+..++... |...-...+.-+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            77776 88888888888887653321  1   1133333321  145677777777777653 44444566667778888


Q ss_pred             hcCCHHHHHHHHHHHhhc
Q 006744          494 KIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       494 ~~g~~~~A~~~~~~~~~~  511 (632)
                      ...++++|++++..+++.
T Consensus       217 ~~eN~~eai~Ilk~il~~  234 (711)
T COG1747         217 ENENWTEAIRILKHILEH  234 (711)
T ss_pred             cccCHHHHHHHHHHHhhh
Confidence            899999999999988764

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.52  E-value=5.4  Score=37.31  Aligned_cols=104  Identities=11%  Similarity=0.121  Sum_probs=68.6

Q ss_pred             CCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccH
Q 006744          197 NLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL---VEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR  273 (632)
Q Consensus       197 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  273 (632)
                      .|....+.+...++..-....+++.+...+-+++..-   ..++. +-.+.++.|.+ =+.++++.++..=++.|+-||.
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccch
Confidence            3444455555556655556677778877777776531   11221 22233444443 3556888888888888888888


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          274 AIYGVLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      .+++.+|+.+.+.++..+|..+.-.|...
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            88888888888888888888887777654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=87.14  E-value=4.5  Score=38.24  Aligned_cols=90  Identities=12%  Similarity=-0.014  Sum_probs=51.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006744          490 KGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGT  568 (632)
Q Consensus       490 ~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~  568 (632)
                      +-|.++|.+++|+..|...+..   .| +.++|..-..+|.+.+.+..|..=.+.++..+ ..-...|..-+.+-...|+
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence            3466777777777777765533   34 55666666777777777776666665555442 1112234444444444566


Q ss_pred             HHHHHHHHHHHHHCC
Q 006744          569 LEEARKVFTNLRERK  583 (632)
Q Consensus       569 ~~~A~~~~~~m~~~~  583 (632)
                      ..+|.+-++..++..
T Consensus       181 ~~EAKkD~E~vL~LE  195 (536)
T KOG4648|consen  181 NMEAKKDCETVLALE  195 (536)
T ss_pred             HHHHHHhHHHHHhhC
Confidence            666666666655543

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=87.08  E-value=6.7  Score=29.77  Aligned_cols=48  Identities=17%  Similarity=0.177  Sum_probs=25.7

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL  233 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  233 (632)
                      .+|+|++|..+.+.+    +.||...|-+|-.  .+.|.-+++..-+..|...|
T Consensus        51 NrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg   98 (115)
T TIGR02508        51 NRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAASG   98 (115)
T ss_pred             ccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC
Confidence            344555555444444    3466666665543  35555555555565666555

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.64  E-value=37  Score=34.02  Aligned_cols=122  Identities=8%  Similarity=-0.026  Sum_probs=63.9

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHH
Q 006744          354 AEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALY  433 (632)
Q Consensus       354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  433 (632)
                      ...|+.-.|-+-+........ -++.............|+++.+...+....+.-.....+...++....+.|++++|..
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~-~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s  378 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQ-QDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS  378 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCC-CCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence            345665555444443333221 1333344444445666777777766665544322344556666666677777777777


Q ss_pred             HHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          434 LFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       434 ~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      +-..|....++- ..........-...|-++++...|+++...+
T Consensus       379 ~a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        379 TAEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            766666554432 2222222223334556666666666665543

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.69  E-value=64  Score=35.83  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCC---CcCHHhHHHHHHHHHhcCCh--hHHHHHHHHHHHcCCcccHHhHH---
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLV---EADVMAYVTLIMGLCKGGRV--VRGHELFREMKENGILIDRAIYG---  277 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~---  277 (632)
                      |..|+..|...|+.++|+++|.+..+..-   .--...+--++.-+.+.+.-  +-.++.-+...+....-...++.   
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence            78888889999999999999988876320   00011222244444444333  33444333333322111111111   


Q ss_pred             ---------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744          278 ---------VLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR  320 (632)
Q Consensus       278 ---------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  320 (632)
                               ..+-.|.+....+-+..+++.+....-..+....+.++..|+.
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                     1122344555566666666666655444455556666665553

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.64  E-value=27  Score=31.49  Aligned_cols=58  Identities=16%  Similarity=0.266  Sum_probs=33.8

Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHH-HHH--hcCCHHHHHHHHHHHHHCCCCC
Q 006744          529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSA---IIS-GMC--KHGTLEEARKVFTNLRERKLLT  586 (632)
Q Consensus       529 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~---l~~-~~~--~~g~~~~A~~~~~~m~~~~~~~  586 (632)
                      ...+++.+|+++|++.....+..+.--|..   ++. ++|  -.++.-.+...+++-++..+.-
T Consensus       165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F  228 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF  228 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence            455788888888888776644333333321   111 222  2356666777777777776543

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=85.50  E-value=32  Score=32.23  Aligned_cols=27  Identities=19%  Similarity=0.006  Sum_probs=20.7

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744          480 PSVAAYNCLTKGLCKIGEIDAAMMLVR  506 (632)
Q Consensus       480 p~~~~~~~li~~~~~~g~~~~A~~~~~  506 (632)
                      -++.....+...|.+.|++.+|...|-
T Consensus        88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   88 GDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            467788889999999999999988773

; PDB: 3LKU_E 2WPV_G.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.46  E-value=2.5  Score=24.60  Aligned_cols=28  Identities=18%  Similarity=0.148  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      +|..+..+|...|++++|...|++.++.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            4555555566666666666666655544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=85.30  E-value=40  Score=33.20  Aligned_cols=64  Identities=14%  Similarity=0.079  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP---NEVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      ..+|..++..+.+.|.++.|...+.++...+...   ++.+...-+..+...|+.++|...++...+
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455566667777777777777777766543111   233444455666677777777777777766

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PRK11619 lytic murein transglycosylase; Provisional

Probab=85.10  E-value=61  Score=35.08  Aligned_cols=79  Identities=10%  Similarity=0.021  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006744          463 ILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLN  542 (632)
Q Consensus       463 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  542 (632)
                      ..++...++......  .+......-+..-...++++.+...+..|-......+.-.-|  +.+++...|+.++|..+|+
T Consensus       295 ~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW--~aRa~~~~g~~~~A~~~~~  370 (644)
T PRK11619        295 TDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYW--QADLLLEQGRKAEAEEILR  370 (644)
T ss_pred             CHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHH--HHHHHHHcCCHHHHHHHHH
Confidence            344444444433221  133333333444446666666666666654332211111112  4555555666666666666


Q ss_pred             HHH
Q 006744          543 EMT  545 (632)
Q Consensus       543 ~m~  545 (632)
                      .+.
T Consensus       371 ~~a  373 (644)
T PRK11619        371 QLM  373 (644)
T ss_pred             HHh
Confidence            653

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.07  E-value=21  Score=29.69  Aligned_cols=51  Identities=16%  Similarity=0.206  Sum_probs=27.5

Q ss_pred             cCCHHHHHHHHHHHHhCCCC-cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744          181 QGRIAEMLEILEKMRRNLCK-PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL  233 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  233 (632)
                      .++.+++..+++.|.-..+. +...++-.  ..+...|++++|+++|+++.+.+
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccC
Confidence            34555555555555543211 11222222  33567777778887777777653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.03  E-value=68  Score=35.60  Aligned_cols=27  Identities=22%  Similarity=0.255  Sum_probs=18.8

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          310 IYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       310 ~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      -|..|+..|...|+.++|+++|.+...
T Consensus       506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  506 KYRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence            466677777777777777777776654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.95  E-value=2.7  Score=24.35  Aligned_cols=29  Identities=21%  Similarity=0.147  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      .|..+..++...|++++|++.|++..+..
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~   31 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALELD   31 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence            45556666666666666666666665543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=84.87  E-value=34  Score=32.06  Aligned_cols=140  Identities=17%  Similarity=0.290  Sum_probs=93.2

Q ss_pred             cCChhHHHHHHHHHHH-cCCcccHHhHHHHHHHHHh-cC-CHHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHH
Q 006744          251 GGRVVRGHELFREMKE-NGILIDRAIYGVLIEGLVG-EG-KVGKACDLLKDLVDS-GYRADLGIYNSIIGGLCRVKQFDK  326 (632)
Q Consensus       251 ~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~  326 (632)
                      +..+.+|+++|+...- ..+.-|..+...|++.... .+ ....-.++.+-+... |-.++..+...+|..++..+++.+
T Consensus       141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k  220 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK  220 (292)
T ss_pred             hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence            3445667777763221 2344577777777766665 22 233333444444432 345677777888899999999999


Q ss_pred             HHHHHHHHHhC-CCCCCHhcHHHHHHHHHhcCChhHHHHHHHH-----HHHCCCCccccHHHHHHHHhhh
Q 006744          327 AYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ-----MEKLKFSVAADLEKFFEFLVGK  390 (632)
Q Consensus       327 A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~  390 (632)
                      -.++++..... +..-|..-|..+|+.....|+..-...+.++     +.+.++..+..+...+-..+.+
T Consensus       221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            99998877655 5566788899999999999998877777764     3556677777777766665544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=84.13  E-value=23  Score=29.44  Aligned_cols=52  Identities=17%  Similarity=0.229  Sum_probs=31.8

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          458 VESGDILEACECHNKIIEMSQV-PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       458 ~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      ...++.+++..++..|.-.... +...++...  .+...|++++|+++|+++.+.
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhcc
Confidence            3467777777777777654321 223333333  355777888888888776544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.04  E-value=22  Score=35.64  Aligned_cols=107  Identities=15%  Similarity=0.034  Sum_probs=64.8

Q ss_pred             HHcCCHHHHHHHHHHHH---HCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhc------CCCC--------
Q 006744          458 VESGDILEACECHNKII---EMSQVPS-----VAAYNCLTKGLCKIGEIDAAMMLVRDCLGN------VASG--------  515 (632)
Q Consensus       458 ~~~g~~~~a~~~~~~~~---~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~--------  515 (632)
                      .-.|++.+|.+++...-   +.|...+     ...||.|...+.+.|.+..+..+|.+.+++      .+..        
T Consensus       251 Y~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls  330 (696)
T KOG2471|consen  251 YAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLS  330 (696)
T ss_pred             HHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehh
Confidence            34566666666654321   1121111     222355555556667777777777666531      1111        


Q ss_pred             ---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006744          516 ---PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH  566 (632)
Q Consensus       516 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  566 (632)
                         .-..+|| ....|...|+.-.|.+.|.+.... +.-++..|-.|..+|...
T Consensus       331 ~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  331 QNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             cccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence               1234455 455677889999999999988876 677889999999988743

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.95  E-value=3  Score=25.59  Aligned_cols=28  Identities=18%  Similarity=0.227  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          554 VICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      .+++.|...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4677788888888888888888877754

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.90  E-value=2.7  Score=25.83  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=18.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      .+++.|...|...|++++|..++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456677777777777777777777654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=83.68  E-value=73  Score=34.89  Aligned_cols=222  Identities=15%  Similarity=0.079  Sum_probs=114.5

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCcccc----H----HHHHHHHhhhcccHHHHHHHHHHHHhCCCC-----ChhHHHHHHH
Q 006744          354 AEMGRMDNFFKLLAQMEKLKFSVAAD----L----EKFFEFLVGKEERIMMALDVFEELKGKGYS-----SVPIYNILMG  420 (632)
Q Consensus       354 ~~~~~~~~a~~~~~~~~~~~~~~~~~----~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~li~  420 (632)
                      ....++++|..++.++...-..++..    .    ...-.......|+.+.|+++.+...+.-+.     ....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            34567888888887775543322111    1    111122234568888888888776554322     4566778888


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCcCHHHHH---HHH--HHHHHcCCHH--HHHHHHHHHHHC-----CC-CCCHHhHHH
Q 006744          421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFS---IAI--QCHVESGDIL--EACECHNKIIEM-----SQ-VPSVAAYNC  487 (632)
Q Consensus       421 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~---~ll--~~~~~~g~~~--~a~~~~~~~~~~-----~~-~p~~~~~~~  487 (632)
                      +..-.|++++|..+..+..+..-.-+...|.   .+.  ..+...|...  +....|......     .. .+-..++..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            8888999999998887766542222333222   222  2345566322  222333332221     00 122334444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHh---hcCCCCChHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHH
Q 006744          488 LTKGLCKIGEIDAAMMLVRDCL---GNVASGPTEFKYA--LTILHVCRSGEAEKIIEVLNEMTQEGCP----PNEVICSA  558 (632)
Q Consensus       488 li~~~~~~g~~~~A~~~~~~~~---~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~m~~~g~~----p~~~~~~~  558 (632)
                      +..++.+   ++.+..-...-.   ......|-...+.  .|+......|+.++|...++++......    ++...-..
T Consensus       586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~  662 (894)
T COG2909         586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY  662 (894)
T ss_pred             HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            5555544   333322222111   1111112222222  4666677889999999888887765322    23222223


Q ss_pred             HHHH--HHhcCCHHHHHHHHHH
Q 006744          559 IISG--MCKHGTLEEARKVFTN  578 (632)
Q Consensus       559 l~~~--~~~~g~~~~A~~~~~~  578 (632)
                      .+..  ....|+.+.|.....+
T Consensus       663 ~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         663 KVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HhhHHHhcccCCHHHHHHHHHh
Confidence            3332  2356787777766555

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.65  E-value=31  Score=30.48  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHccCCHHHH
Q 006744          255 VRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS---GYRADLGIYNSIIGGLCRVKQFDKA  327 (632)
Q Consensus       255 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~li~~~~~~g~~~~A  327 (632)
                      +.|++.|-.+...+..-++.....|...|. ..+.+++..++....+.   +-.+|...+.+|++.|.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            344444444444433333333333333333 33444444444444332   1133444555555555555555544

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.42  E-value=42  Score=31.91  Aligned_cols=48  Identities=13%  Similarity=0.187  Sum_probs=26.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK  250 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~  250 (632)
                      ....|..++.+|+...-.++|+..+++-.+.| ..+...|.-=++.+++
T Consensus       298 ~~~l~kq~l~~~A~d~aieD~i~~L~~~~r~G-~i~l~~yLr~VR~lsR  345 (365)
T KOG2391|consen  298 TAPLYKQILECYALDLAIEDAIYSLGKSLRDG-VIDLDQYLRHVRLLSR  345 (365)
T ss_pred             cchHHHHHHHhhhhhhHHHHHHHHHHHHHhcC-eeeHHHHHHHHHHHHH
Confidence            33445666666666666666666666666665 2344444444444443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=83.33  E-value=2.7  Score=26.57  Aligned_cols=27  Identities=19%  Similarity=0.103  Sum_probs=22.3

Q ss_pred             HHHHHHhCCChhHHhHHHHHHHhcCCH
Q 006744          158 LAYCLSRNNLFRAADQVPELMDSQGRI  184 (632)
Q Consensus       158 li~~~~~~~~~~~a~~l~~~~~~~g~~  184 (632)
                      |..+|...|+.+.|+++++++...|+.
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~~~~   31 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEEGDE   31 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcCCH
Confidence            678888899999999888888877764

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=83.28  E-value=18  Score=27.56  Aligned_cols=51  Identities=14%  Similarity=0.208  Sum_probs=29.5

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          527 HVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       527 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      .+...|++++|..+.+.+    ..||...|..|.  -.+.|.-+.+..-+.+|...|
T Consensus        48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg   98 (115)
T TIGR02508        48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALC--EWRLGLGSALESRLNRLAASG   98 (115)
T ss_pred             HHHccchHHHHHHhcCCC----CCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC
Confidence            344566666666665554    356666665553  335666666666666665555

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.66  E-value=3.6  Score=23.88  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=13.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          484 AYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       484 ~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      +|..+..+|...|++++|+..|++++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al   28 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRAL   28 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            34445555555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.61  E-value=0.57  Score=39.25  Aligned_cols=83  Identities=11%  Similarity=0.055  Sum_probs=51.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744          244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ  323 (632)
Q Consensus       244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  323 (632)
                      ++..+.+.+..+....+++.+...+..-+....+.++..|++.+..++..++++..       +..-...++..+.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45566666777777777777776665556777777778887777767776666511       11222345566666666


Q ss_pred             HHHHHHHHHH
Q 006744          324 FDKAYKLFEV  333 (632)
Q Consensus       324 ~~~A~~~~~~  333 (632)
                      +++|.-++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            6666665554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.49  E-value=23  Score=36.57  Aligned_cols=99  Identities=19%  Similarity=0.122  Sum_probs=66.9

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE  468 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  468 (632)
                      .+.|+++.|.++..+..     +..-|..|..+..+.|++..|.+.|.....         |..|+-.+...|+.+....
T Consensus       648 l~lgrl~iA~~la~e~~-----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN-----SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hhcCcHHHHHHHHHhhc-----chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            45677777777665442     344588888888888888888888776654         4456666777777776666


Q ss_pred             HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       469 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      +-....+.|.      .|....+|...|+++++.+++.+
T Consensus       714 la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  714 LASLAKKQGK------NNLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence            6666665553      23344456677888888877755

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=82.38  E-value=12  Score=33.29  Aligned_cols=77  Identities=16%  Similarity=0.141  Sum_probs=55.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 006744          484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE--GCPPNEVICSAIIS  561 (632)
Q Consensus       484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~l~~  561 (632)
                      |.+..++.+.+.+.+.+|+...++-++..+...+  +-..++..+|-.|++++|..-++-.-+.  ...+-..+|..++.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~--~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAG--GRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCcccc--chhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            4456677888899999999998887665433333  3344889999999999998877766554  23445667777776


Q ss_pred             H
Q 006744          562 G  562 (632)
Q Consensus       562 ~  562 (632)
                      +
T Consensus        81 ~   81 (273)
T COG4455          81 C   81 (273)
T ss_pred             H
Confidence            4

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.29  E-value=14  Score=34.25  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=51.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHh----
Q 006744          350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLE----  424 (632)
Q Consensus       350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~----  424 (632)
                      |.+++..++|.++....-+.-+.--+..+.+....|..|.|.+....+.++-......... +..-|..++..|..    
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            4556666666665555444433333344556666666677777777777666665543322 44447776666654    


Q ss_pred             -cCChhhHHHHH
Q 006744          425 -IGEVKKALYLF  435 (632)
Q Consensus       425 -~g~~~~A~~~~  435 (632)
                       .|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence             68888888776

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=81.95  E-value=80  Score=34.07  Aligned_cols=41  Identities=12%  Similarity=0.099  Sum_probs=18.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      +|--|.|.|++++|.++..+..+. .......|...+..|..
T Consensus       117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~  157 (613)
T PF04097_consen  117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS  157 (613)
T ss_dssp             HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred             HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence            444555555555555555333222 22233344444455444

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.75  E-value=14  Score=32.48  Aligned_cols=73  Identities=14%  Similarity=0.107  Sum_probs=43.9

Q ss_pred             hhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744          429 KKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAAYNCLTKGLCKIGEIDAAM  502 (632)
Q Consensus       429 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~A~  502 (632)
                      +.|...|-++...+.- +....-..+..|-...+.+++..++....+.   +-.+|+..+.+|+..|.+.|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            5566666666666533 3333333333444466677777777666643   22466777777777777777777664

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=81.33  E-value=51  Score=31.40  Aligned_cols=95  Identities=15%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCChHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCCCCC----HHH
Q 006744          484 AYNCLTKGLCKIGEIDAAMMLVRDCLGN---VASGPTEFKYALTIL-HVCRSGEAEKIIEVLNEMTQEGCPPN----EVI  555 (632)
Q Consensus       484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~  555 (632)
                      .+-.....||+.|+-+.|.+.+.+..+.   .+.+-|++.+.+-+. .|....-+.+-++..+.+.+.|..-+    ..+
T Consensus       106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv  185 (393)
T KOG0687|consen  106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV  185 (393)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence            3444556677777777777666655432   233445444432211 12222223344444444555553222    123


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          556 CSAIISGMCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       556 ~~~l~~~~~~~g~~~~A~~~~~~m~  580 (632)
                      |..+  -|....++.+|-.+|-+..
T Consensus       186 Y~Gl--y~msvR~Fk~Aa~Lfld~v  208 (393)
T KOG0687|consen  186 YQGL--YCMSVRNFKEAADLFLDSV  208 (393)
T ss_pred             HHHH--HHHHHHhHHHHHHHHHHHc
Confidence            3332  1234456666666665443

>PF14669 Asp_Glu_race_2: Putative aspartate racemase

Probab=81.07  E-value=36  Score=29.57  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=37.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCC--------------CCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          452 IAIQCHVESGDILEACECHNKIIEMSQ--------------VPSVAAYNCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       452 ~ll~~~~~~g~~~~a~~~~~~~~~~~~--------------~p~~~~~~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      +++-.|.+..++.++.++++.|.+..+              .+--...|.....|.+.|.+|.|+.++++
T Consensus       137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre  206 (233)
T PF14669_consen  137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE  206 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence            445556667777777777777765322              23344567777778888888888888764

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=81.02  E-value=23  Score=27.19  Aligned_cols=46  Identities=4%  Similarity=-0.047  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE  266 (632)
Q Consensus       221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  266 (632)
                      +..+-++.+-...+.|+.....+.+++|.+.+++..|.++|+-++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4445555555555666666666666666666666666666666554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=80.90  E-value=10  Score=28.60  Aligned_cols=48  Identities=13%  Similarity=0.181  Sum_probs=34.6

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744          323 QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQME  370 (632)
Q Consensus       323 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  370 (632)
                      +.-++.+-++.+...++.|+.....+.+++|.+.+++..|.++++-+.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            445666667777777777777777777777777777777777777655

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=80.72  E-value=12  Score=28.25  Aligned_cols=45  Identities=4%  Similarity=-0.055  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744          221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMK  265 (632)
Q Consensus       221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  265 (632)
                      ++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+-++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            334444444444444444455555555555555555555554443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	632
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	8e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 83.7 bits (206), Expect = 7e-17
 Identities = 92/629 (14%), Positives = 182/629 (28%), Gaps = 206/629 (32%)

Query: 70  QSPPSDPKTFQL-----QRHLSPIARFITDAFRKNQFQWGPQVVTELSKLRRVTPDLVAE 124
            S  +   T +L      +    + +F+ +  R N +++                  +  
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-YKF------------------LMS 96

Query: 125 VLKVENN-PTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR 183
            +K E   P++ ++              +           R+ L+       +   S  R
Sbjct: 97  PIKTEQRQPSMMTR-------------MYIEQ--------RDRLYNDNQVFAKYNVS--R 133

Query: 184 IAEMLEI---LEKMRRNLCKPDVFAYTAMI----RVLAAE--RNLDACLRV-----WEEM 229
           +   L++   L ++R      +V     ++      +A +   +     ++     W  +
Sbjct: 134 LQPYLKLRQALLELRPA---KNVLID-GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189

Query: 230 KKDLVEADVMA-----YVTLIMGLCKGGRV-----VRGHELFREMKENGILIDRAIY--G 277
           K       V+         +               +R H +  E++    L+    Y   
Sbjct: 190 KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LLKSKPYENC 246

Query: 278 VLIEGL--VGEGKVGKA----CDLL--------KDLVDSGYRADLGIYNSIIGGLCRVKQ 323
           +L+  L  V   K   A    C +L         D + +     + + +     L     
Sbjct: 247 LLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTLTP--- 300

Query: 324 FDKAYKLF----EVTVQDDLAPDFSTVNPLLVC-CAEM-----GRMDNFFKLLAQMEKLK 373
            D+   L     +   QD L  +  T NP  +   AE         DN+  +    +KL 
Sbjct: 301 -DEVKSLLLKYLDCRPQD-LPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLT 356

Query: 374 FSVAADLEKFFEFLVGKEERIM-MALDVFEELKGKGYSSVPIYNILMGAL---LEIGEVK 429
                 +E     L   E R M   L VF         S  I  IL+  +   +   +V 
Sbjct: 357 TI----IESSLNVLEPAEYRKMFDRLSVFPP-------SAHIPTILLSLIWFDVIKSDVM 405

Query: 430 KALYLFGKMRGLNLEVNSLSFSI-----AIQCHVESGDILEACECHNKIIEMSQVPSVAA 484
             +    K   +  +    + SI      ++  +E+   L     H  I++         
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-----HRSIVD--------H 452

Query: 485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTIL--HVCRSGEAE------- 535
           YN + K                    +    P   +Y  + +  H+      E       
Sbjct: 453 YN-IPKTFDS----------------DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 536 ----------KII----------EVLNEMTQ---------EGCPPNEVICSAIISGMCKH 566
                     KI            +LN + Q         +  P  E + +AI+  + K 
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 567 GT-LEEARKVFTNLRERKLLTEANTIVYD 594
              L  ++  +T+L    L+ E   I  +
Sbjct: 556 EENLICSK--YTDLLRIALMAEDEAIFEE 582

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 7e-11
 Identities = 85/555 (15%), Positives = 171/555 (30%), Gaps = 133/555 (23%)

Query: 173 QVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD 232
           ++  ++ S+  ++  L +   +     K +      +  VL    N    +   +  ++ 
Sbjct: 50  EIDHIIMSKDAVSGTLRLFWTLLS---KQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQ 104

Query: 233 LVEADVMAYVTLIMGLCKGGRVVRGHELFREMK----ENGILIDRAIYGVLIEGLVGEGK 288
                   Y+     L    +V   + + R          +L  R    VLI+G++G   
Sbjct: 105 -PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG--- 160

Query: 289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNP 348
            GK       +          +            + D  +K+F + +++  +P+ + +  
Sbjct: 161 SGKTW-----VALDVCL-SYKV----------QCKMD--FKIFWLNLKNCNSPE-TVLEM 201

Query: 349 LLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE-ERIMMALD-------- 399
           L     ++    N+         +K  + +   +    L  K  E  ++ L         
Sbjct: 202 LQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259

Query: 400 -----------------VFEELKGKGYSSVPIYNILMGALLEIGEVKK--ALYLFGKMRG 440
                            V + L     + + + +  M   L   EVK     YL  + + 
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQD 317

Query: 441 LNLEV---NSLSFS-IAIQCHVESGDILE-----ACECHNKIIEMS---QVPSV--AAYN 486
           L  EV   N    S IA     +     +      C+    IIE S     P+     ++
Sbjct: 318 LPREVLTTNPRRLSIIAESIR-DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 487 CL----------TKGLC-----KIGEIDAAMM--LVRDCLGNVASGPTEFKYALTILHVC 529
            L          T  L       I      ++  L +  L  V   P E   ++  +++ 
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEKQPKESTISIPSIYLE 434

Query: 530 RSGEAE-------KIIE---VLNEMTQEGCPPNEV---ICSAI---ISGMCKHGTLEEAR 573
              + E        I++   +      +   P  +     S I   +  +     +   R
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 574 KVFTNLR--ERKLLTE----------ANTI----VYDEILIEHMKKKTADLVLSGLKF-F 616
            VF + R  E+K+  +           NT+     Y   + ++  K    LV + L F  
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYER-LVNAILDFLP 553

Query: 617 GLESKL-KAKGCKLL 630
            +E  L  +K   LL
Sbjct: 554 KIEENLICSKYTDLL 568

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 6e-09
 Identities = 57/352 (16%), Positives = 107/352 (30%), Gaps = 101/352 (28%)

Query: 321 VKQFDKAYKLFEVTVQDDLAPDFST--VNPLLVCCAEMGRMDNFFKLL--AQMEKLKFSV 376
           V  FD         VQD      S   ++ +++    +      F  L   Q E ++  V
Sbjct: 30  VDNFDCKD------VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV 83

Query: 377 AADLEKFFEFLVG--KEERIMMALD--VFEELKGKGYSSVPI---YNI--------LMGA 421
              L   ++FL+   K E+   ++   ++ E + + Y+   +   YN+        L  A
Sbjct: 84  EEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA 143

Query: 422 LLEIGEVKKALYLFGKMRG-----LNLEVNSLSFSIAIQCHVESGDI----LEACECHNK 472
           LLE+    K + + G + G     + L+V     S  +QC ++   I    L+ C     
Sbjct: 144 LLEL-RPAKNVLIDG-VLGSGKTWVALDVCL---SYKVQCKMDFK-IFWLNLKNCNSPET 197

Query: 473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMML----VRDCLGNVASGPTEFKYALTIL-H 527
           ++EM Q         +        +  + + L    ++  L  +      ++  L +L +
Sbjct: 198 VLEMLQ----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK-PYENCLLVLLN 252

Query: 528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTE 587
           V  +    K     N      C                                + LLT 
Sbjct: 253 VQNA----KAWNAFNL----SC--------------------------------KILLTT 272

Query: 588 ANTIVYDEILIEHMKKKTADLVLSGL----------KFFGLE-SKLKAKGCK 628
               V D +        + D     L          K+       L  +   
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 64.5 bits (155), Expect = 9e-11
 Identities = 23/195 (11%), Positives = 55/195 (28%), Gaps = 4/195 (2%)

Query: 191 LEKMRRNLCKPDVFAYTAMIRVLAAERNLD---ACLRVWEEMKKDLVEADVMAYVTLIMG 247
             +  +           A  +       L      L V    ++      +  Y  +++G
Sbjct: 115 SGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLG 174

Query: 248 LCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-VGKACDLLKDLVDSGYRA 306
             + G       +   +K+ G+  D   Y   ++ +  + +  G     L+ +   G + 
Sbjct: 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKL 234

Query: 307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLL 366
                  ++    R       +K+          P     + LL          ++ KL 
Sbjct: 235 QALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294

Query: 367 AQMEKLKFSVAADLE 381
             ++ L+      L 
Sbjct: 295 LPLKTLQCLFEKQLH 309

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 52.9 bits (125), Expect = 3e-07
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 2/104 (1%)

Query: 471 NKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG--PTEFKYALTILHV 528
            +  +              K      ++  A  L+    G        T   Y   +L  
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175

Query: 529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA 572
            R G  ++++ VL  +   G  P+ +  +A +  M +       
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 51.4 bits (121), Expect = 8e-07
 Identities = 23/189 (12%), Positives = 49/189 (25%), Gaps = 32/189 (16%)

Query: 320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD 379
                D          Q  L+     +     CC    ++     LL      +      
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR------ 157

Query: 380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR 439
                                    + +   ++ +YN +M      G  K+ +Y+   ++
Sbjct: 158 -------------------------QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192

Query: 440 GLNLEVNSLSFSIAIQCHVESGDILEACE-CHNKIIEMSQVPSVAAYNCLTKGLCKIGEI 498
              L  + LS++ A+QC           E C  ++ +            L     +   +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252

Query: 499 DAAMMLVRD 507
            A   +   
Sbjct: 253 KAVHKVKPT 261

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 34/226 (15%), Positives = 71/226 (31%), Gaps = 16/226 (7%)

Query: 219 LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV 278
           ++   RV     +  VE DV  Y   +          +   +  E+K +     +A+  +
Sbjct: 19  INEAQRVKPSSPERDVERDVFLYRAYLA-------QRKYGVVLDEIKPSSAPELQAVR-M 70

Query: 279 LIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG-LCRVKQFDKAYKLFEVTVQD 337
             E L    +       L   +          +  +        +  D A +       D
Sbjct: 71  FAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GD 128

Query: 338 DLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLK-FSVAADLEKFFEFLVGKEERIMM 396
            L     TV        ++ R+D   K L +M+     +    L   +  L    E++  
Sbjct: 129 SLECMAMTVQ----ILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQD 184

Query: 397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN 442
           A  +F+E+  K   ++ + N      +  G  + A  +  +    +
Sbjct: 185 AYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	632
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.88
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.75
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.63
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.61
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.6
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.56
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.54
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.51
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.49
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.44
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.43
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.38
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.37
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.31
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.29
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.21
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.2
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.2
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.17
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.14
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.02
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.02
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.01
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.0
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.0
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.93
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.93
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.92
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.91
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.89
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.87
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.87
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.84
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.84
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.83
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.8
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.78
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.77
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.77
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.76
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.73
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.68
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.67
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.65
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.64
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.62
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.62
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.57
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.57
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.56
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.55
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.51
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.5
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.48
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.48
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.45
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.42
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.42
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.41
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.39
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.38
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.38
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.37
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.31
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.29
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.22
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.22
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.22
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.2
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.19
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.19
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.19
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.17
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.16
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.16
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.14
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.12
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.11
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.09
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.08
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.05
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.05
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.99
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.95
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.91
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.89
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.89
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.88
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.84
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.84
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.83
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.82
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.8
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.77
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.77
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.76
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.67
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.66
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.6
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.54
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.51
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.39
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.37
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.35
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.34
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.31
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.22
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.21
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.13
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.02
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.0
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.99
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.78
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.59
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.55
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.49
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.48
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.38
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.37
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.33
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.27
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.2
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.97
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.93
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.79
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.41
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	95.31
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.23
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.21
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.12
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.87
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.57
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.84
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.83
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.6
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.83
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.5
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.71
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	91.68
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.54
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.33
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.05
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	90.84
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.7
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.6
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.38
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.74
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.07
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.96
2p58_C	116	Putative type III secretion protein YSCG; type III	86.68
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.68
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	85.52
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.51
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.37
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	83.44
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	83.11
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	82.43
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	81.64

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.5e-38  Score=340.43  Aligned_cols=435  Identities=12%  Similarity=-0.025  Sum_probs=371.5

Q ss_pred             HHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744          122 VAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP  201 (632)
Q Consensus       122 ~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  201 (632)
                      +...+...++++.|+.+|+.+..   ..|+..++..++.+|.+.|++++|..+|+.+..                  ..+
T Consensus        90 ~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------------~~~  148 (597)
T 2xpi_A           90 WRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL------------------YNR  148 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG------------------GGT
T ss_pred             HHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc------------------ccc
Confidence            34455667899999999998874   357888999999999999888777777665532                  246


Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKD---------------LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE  266 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  266 (632)
                      +..+++.++.+|.+.|++++|+++|+++...               +...+..+|+.++.+|.+.|++++|.++|++|.+
T Consensus       149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  228 (597)
T 2xpi_A          149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM  228 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            8889999999999999999999999853221               2234578999999999999999999999999988


Q ss_pred             cCCcccHHh--------------------------------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006744          267 NGILIDRAI--------------------------------------YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL  308 (632)
Q Consensus       267 ~~~~p~~~~--------------------------------------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  308 (632)
                      .+.. +...                                      |+.++..|.+.|++++|.++|+++.+.  .++.
T Consensus       229 ~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~  305 (597)
T 2xpi_A          229 VDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSS  305 (597)
T ss_dssp             HCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCH
T ss_pred             hCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchH
Confidence            6543 3333                                      333356677889999999999999876  4689


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHh
Q 006744          309 GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV  388 (632)
Q Consensus       309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (632)
                      .+|+.++.+|.+.|++++|+++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+... .+...+..++.+|
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~  383 (597)
T 2xpi_A          306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EKAVTWLAVGIYY  383 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHH
Confidence            99999999999999999999999999976533 778899999999999999999999999986543 3567788889999


Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACE  468 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~  468 (632)
                      .+.|++++|.++|+++.+..+.+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.+
T Consensus       384 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  462 (597)
T 2xpi_A          384 LCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANE  462 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999998777789999999999999999999999999998864 5578899999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          469 CHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPT--EFKYALTILHVCRSGEAEKIIEVLNE  543 (632)
Q Consensus       469 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~  543 (632)
                      +|+++.+.. ..+..+|+.++.+|.+.|++++|+++|+++++..   +..|+  ..+|..++.+|.+.|++++|++++++
T Consensus       463 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  541 (597)
T 2xpi_A          463 YLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQ  541 (597)
T ss_dssp             HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            999999865 3478899999999999999999999999987642   44677  78999999999999999999999999


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          544 MTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       544 m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      +.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.+..
T Consensus       542 ~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~  582 (597)
T 2xpi_A          542 GLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN  582 (597)
T ss_dssp             HHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            99875 668999999999999999999999999999998653

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-36  Score=322.23  Aligned_cols=434  Identities=8%  Similarity=-0.023  Sum_probs=375.2

Q ss_pred             CCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEM  229 (632)
Q Consensus       150 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  229 (632)
                      ++...|+.++..|.+.|++++|..+|+.+..                  ..|+..++..++.+|.+.|++++|..+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  143 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD------------------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKE  143 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHh------------------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence            5788999999999999888777777665543                  2378899999999999999999999999998


Q ss_pred             HhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc---------------CCcccHHhHHHHHHHHHhcCCHHHHHH
Q 006744          230 KKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN---------------GILIDRAIYGVLIEGLVGEGKVGKACD  294 (632)
Q Consensus       230 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~  294 (632)
                      ...  .++..+++.++.+|.+.|++++|.++|+++...               +...+..+|+.++.+|.+.|++++|.+
T Consensus       144 ~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  221 (597)
T 2xpi_A          144 DLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE  221 (597)
T ss_dssp             CGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence            654  678999999999999999999999999953222               234468899999999999999999999


Q ss_pred             HHHHHHHCCCCCCHhhHHH--------------------------------------HHHHHHccCCHHHHHHHHHHHHh
Q 006744          295 LLKDLVDSGYRADLGIYNS--------------------------------------IIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       295 ~~~~m~~~g~~~~~~~~~~--------------------------------------li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      +|++|.+.++. +...+..                                      ++..|.+.|++++|.++|+++.+
T Consensus       222 ~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  300 (597)
T 2xpi_A          222 CYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSING  300 (597)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhc
Confidence            99999987543 3333333                                      35566788999999999999886


Q ss_pred             CCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHH
Q 006744          337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN  416 (632)
Q Consensus       337 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  416 (632)
                      .  .++..++..++.+|.+.|++++|.++|+++.+.+.. +...+..++.+|.+.|++++|.++|+++.+..+.+..+|+
T Consensus       301 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  377 (597)
T 2xpi_A          301 L--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWL  377 (597)
T ss_dssp             G--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred             C--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHH
Confidence            5  578999999999999999999999999999987654 6778888999999999999999999999988777899999


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 006744          417 ILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG  496 (632)
Q Consensus       417 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g  496 (632)
                      .++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ ..+..+|+.++.+|.+.|
T Consensus       378 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g  455 (597)
T 2xpi_A          378 AVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLG  455 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC
Confidence            99999999999999999999998753 4467899999999999999999999999999865 347889999999999999


Q ss_pred             CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHH
Q 006744          497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPN--EVICSAIISGMCKHGTLE  570 (632)
Q Consensus       497 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~  570 (632)
                      ++++|.++|+++++..+  .+..+|+.++..|.+.|++++|+++|+++.+.    +..|+  ..+|..++.+|.+.|+++
T Consensus       456 ~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  533 (597)
T 2xpi_A          456 NILLANEYLQSSYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD  533 (597)
T ss_dssp             CHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence            99999999999987643  36778999999999999999999999999876    66777  789999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCCChhhHHHHHHHHhhhchhHHHHhhhh
Q 006744          571 EARKVFTNLRERKLLTEANTIVYDEILIEHMKKKTADLVLSGLK  614 (632)
Q Consensus       571 ~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~l~  614 (632)
                      +|.++|+++.+.+..   +...|..+...+.+.++.+.+.+.++
T Consensus       534 ~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~  574 (597)
T 2xpi_A          534 AAIDALNQGLLLSTN---DANVHTAIALVYLHKKIPGLAITHLH  574 (597)
T ss_dssp             HHHHHHHHHHHHSSC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            999999999988732   45677777777887777777776665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=3.8e-30  Score=263.43  Aligned_cols=203  Identities=17%  Similarity=0.159  Sum_probs=166.0

Q ss_pred             HHHHHhhhcCCCCCCH-HHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh
Q 006744          137 KFFHWAGKQKGYKHNF-ASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA  215 (632)
Q Consensus       137 ~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  215 (632)
                      .+++.+ ++.+....+ ..++.+|++|++.|+++                +|+++|++|.+.|+.||..+||+||.+|++
T Consensus        11 ~L~~~~-~~k~~~~spe~~l~~~id~c~k~G~~~----------------~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~   73 (501)
T 4g26_A           11 NLSRKA-KKKAIQQSPEALLKQKLDMCSKKGDVL----------------EALRLYDEARRNGVQLSQYHYNVLLYVCSL   73 (501)
T ss_dssp             --------------CHHHHHHHHHHHTTTSCCHH----------------HHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHH-HHhcccCCCHHHHHHHHHHHHhCCCHH----------------HHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Confidence            333433 334444433 45788889998886554                455556666777789999999999999987


Q ss_pred             cCC---------hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744          216 ERN---------LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGE  286 (632)
Q Consensus       216 ~g~---------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  286 (632)
                      .+.         +++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.
T Consensus        74 ~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~  153 (501)
T 4g26_A           74 AEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRK  153 (501)
T ss_dssp             CCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHC
Confidence            654         67899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744          287 GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM  356 (632)
Q Consensus       287 g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  356 (632)
                      |++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus       154 g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          154 GDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999998888754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=9.8e-27  Score=234.52  Aligned_cols=374  Identities=13%  Similarity=0.038  Sum_probs=219.1

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      .|++++|+..++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++|.+.
T Consensus        12 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   89 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            456666666666655542 2245566666677777888888888877776653 45667777888888888888888888


Q ss_pred             HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006744          261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA  340 (632)
Q Consensus       261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  340 (632)
                      |+++.+.... +..+|..+..++.+.|++++|.+.|+++.+..+. +...+..+...+...|++++|.++|+++.+... 
T Consensus        90 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-  166 (388)
T 1w3b_A           90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-  166 (388)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-
Confidence            8887775432 4556777778888888888888888777776433 445666677777777888888888877776532 


Q ss_pred             CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006744          341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG  420 (632)
Q Consensus       341 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~  420 (632)
                      -+..+|..+...+...|++++|...++++.+.+.. ....+..+..++...|++++|...|++..+..+.+..+|..+..
T Consensus       167 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  245 (388)
T 1w3b_A          167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC  245 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHH
Confidence            24556666777777777777777777776665432 23334444444555555555555555555544444555555555


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 006744          421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA  500 (632)
Q Consensus       421 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  500 (632)
                      +|...|++++|...|+++.+.+ +.+..++..+..++.+.|++++|.+.|+++.+.. +.+..++..+...+...|++++
T Consensus       246 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  323 (388)
T 1w3b_A          246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence            5555555555555555555432 2233445555555555555555555555555432 2234445555555555555555


Q ss_pred             HHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006744          501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK  565 (632)
Q Consensus       501 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  565 (632)
                      |++.++++++..  ..+...+..+...+.+.|++++|++.++++.+.. +.+...|..+...+..
T Consensus       324 A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~  385 (388)
T 1w3b_A          324 AVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHTTSC--TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHH
Confidence            555555544321  1223344445555555555555555555554432 2334444444444433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=4.7e-30  Score=262.73  Aligned_cols=205  Identities=18%  Similarity=0.286  Sum_probs=181.4

Q ss_pred             HHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC---------hhH
Q 006744          187 MLEILEKMRRNLCKPD-VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR---------VVR  256 (632)
Q Consensus       187 a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---------~~~  256 (632)
                      +..+.+++.+.+.... ...++.+|.+|++.|++++|+++|++|.+.|+.||..+||+||.+|++.+.         +++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            4445566666665544 346889999999999999999999999999999999999999999997765         688


Q ss_pred             HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      |.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc
Q 006744          337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE  391 (632)
Q Consensus       337 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  391 (632)
                      .|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..++..++..++..
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999998888887653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=3.2e-26  Score=230.79  Aligned_cols=366  Identities=13%  Similarity=0.061  Sum_probs=318.4

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      +...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+... .+..+|..+...|.+.|+
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCC
Confidence            3556788999999999999988764 34566777888888999999999999999988754 378899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      +++|.+.|+++.+..+. +..+|..+..++.+.|++++|.+.|+++.+.+.. +...+..+...+...|++++|.+.|++
T Consensus        83 ~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999999999987543 5678999999999999999999999999876422 344566777888899999999999999


Q ss_pred             HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH
Q 006744          369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL  448 (632)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  448 (632)
                      +.+.... +...+..+..++...|++++|...|+++.+.++.+...|..+...+...|++++|...|++..... +-+..
T Consensus       161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~  238 (388)
T 1w3b_A          161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV  238 (388)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence            9887543 456777888889999999999999999999888889999999999999999999999999998753 34577


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV  528 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  528 (632)
                      ++..+..++...|++++|.+.|+++.+... .+..+|..+..++.+.|++++|++.|+++++..  ..+...|..+...+
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHH
Confidence            889999999999999999999999998642 357789999999999999999999999998763  34667888899999


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       529 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ...|++++|++.++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+...
T Consensus       316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  370 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            99999999999999999873 66788999999999999999999999999998643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.1e-23  Score=218.56  Aligned_cols=400  Identities=9%  Similarity=-0.022  Sum_probs=320.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744          177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR  256 (632)
Q Consensus       177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  256 (632)
                      .....|++++|+..|+++.+.+  |+..+|..+..++.+.|++++|++.|+++.+.+ +.+..+|..+..++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~   91 (514)
T 2gw1_A           15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD   91 (514)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence            4457899999999999999865  689999999999999999999999999998875 4567889999999999999999


Q ss_pred             HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------------------
Q 006744          257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS----------------------------------  302 (632)
Q Consensus       257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------------------------------  302 (632)
                      |...|+++.+.+.. +......++..+........+.+.+..+...                                  
T Consensus        92 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
T 2gw1_A           92 AMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI  170 (514)
T ss_dssp             HHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence            99999999887643 4444444444444333333322222111100                                  


Q ss_pred             -CC---------CCCHhhHHHHHHHHHc---cCCHHHHHHHHHHHHh-----CCCCC--------CHhcHHHHHHHHHhc
Q 006744          303 -GY---------RADLGIYNSIIGGLCR---VKQFDKAYKLFEVTVQ-----DDLAP--------DFSTVNPLLVCCAEM  356 (632)
Q Consensus       303 -g~---------~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~p--------~~~~~~~ll~~~~~~  356 (632)
                       ..         ..+...+..+...+..   .|++++|..+|+++.+     ....|        +..++..+...+...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (514)
T 2gw1_A          171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK  250 (514)
T ss_dssp             SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence             00         0113344444444444   8999999999999987     32122        245677788899999


Q ss_pred             CChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHH
Q 006744          357 GRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFG  436 (632)
Q Consensus       357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  436 (632)
                      |++++|...++++.+....  ...+..+..+|...|++++|...++++.+..+.+..+|..+...|...|++++|...|+
T Consensus       251 ~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  328 (514)
T 2gw1_A          251 NDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFD  328 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            9999999999999887755  77778888889999999999999999999888888899999999999999999999999


Q ss_pred             HHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC
Q 006744          437 KMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP  516 (632)
Q Consensus       437 ~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p  516 (632)
                      ++.+.. +.+...+..+...+...|++++|..+++++.+.. ..+..++..+...|...|++++|...+++++...+..+
T Consensus       329 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  406 (514)
T 2gw1_A          329 KAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD  406 (514)
T ss_dssp             HHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred             HHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            998864 3466788889999999999999999999998864 23567888999999999999999999999886544334


Q ss_pred             h----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          517 T----EFKYALTILHVCR---SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       517 ~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      +    ...|..+...+..   .|++++|++.++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.+..
T Consensus       407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  481 (514)
T 2gw1_A          407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART  481 (514)
T ss_dssp             SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence            3    4477789999999   999999999999999874 567889999999999999999999999999998653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4e-22  Score=208.81  Aligned_cols=396  Identities=9%  Similarity=-0.037  Sum_probs=296.3

Q ss_pred             HHHhcCCChhHHHHHHHHhhhcCCCCCCHH--HHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCc
Q 006744          124 EVLKVENNPTLASKFFHWAGKQKGYKHNFA--SYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKP  201 (632)
Q Consensus       124 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  201 (632)
                      ..+-..|+++.|+..|+.+...     +..  +|..+..++.+.                |++++|+..|+++.+.+ +.
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~la~~~~~~----------------g~~~~A~~~~~~al~~~-p~   71 (514)
T 2gw1_A           14 NQFFRNKKYDDAIKYYNWALEL-----KEDPVFYSNLSACYVSV----------------GDLKKVVEMSTKALELK-PD   71 (514)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH----------------TCHHHHHHHHHHHHHHC-SC
T ss_pred             HHHHHhccHHHHHHHHHHHHhc-----CccHHHHHhHHHHHHHH----------------hhHHHHHHHHHHHhccC-hH
Confidence            3444566777777777766542     232  233333444444                56666666666666553 34


Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc--------------
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN--------------  267 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------  267 (632)
                      +..+|..+..+|.+.|++++|...|+++.+.+ +++......++..+........+.+.+..+...              
T Consensus        72 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  150 (514)
T 2gw1_A           72 YSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE  150 (514)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH
Confidence            67899999999999999999999999999876 344455555555444433222222222111100              


Q ss_pred             ---------------------CC---------cccHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCC-----
Q 006744          268 ---------------------GI---------LIDRAIYGVLIEGLVG---EGKVGKACDLLKDLVD-----SGY-----  304 (632)
Q Consensus       268 ---------------------~~---------~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~-----  304 (632)
                                           ..         ..+...+..+...+..   .|++++|..+|+++.+     ..-     
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  230 (514)
T 2gw1_A          151 RKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDE  230 (514)
T ss_dssp             ------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred             HHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccc
Confidence                                 00         1124444555555554   8999999999999987     311     


Q ss_pred             ---CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHH
Q 006744          305 ---RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLE  381 (632)
Q Consensus       305 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  381 (632)
                         ..+..+|..+...+...|++++|..+|+++.+.+..  ...+..+..++...|++++|...++++.+.... +...+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  307 (514)
T 2gw1_A          231 KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVY  307 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHH
T ss_pred             ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHH
Confidence               123567888899999999999999999999876544  778888999999999999999999999887543 45677


Q ss_pred             HHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC
Q 006744          382 KFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG  461 (632)
Q Consensus       382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g  461 (632)
                      ..+..+|...|++++|...|+++.+..+.+..++..+...|...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus       308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~  386 (514)
T 2gw1_A          308 YHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKN  386 (514)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCC
Confidence            7888889999999999999999999887788899999999999999999999999998753 345678888999999999


Q ss_pred             CHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCC
Q 006744          462 DILEACECHNKIIEMSQV-PS----VAAYNCLTKGLCK---IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGE  533 (632)
Q Consensus       462 ~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  533 (632)
                      ++++|...++++.+.... ++    ...+..+...+..   .|++++|...+++++...+  .+...+..+...+...|+
T Consensus       387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~  464 (514)
T 2gw1_A          387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--RSEQAKIGLAQMKLQQED  464 (514)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhcC
Confidence            999999999999874322 12    3478889999999   9999999999999987642  345677789999999999


Q ss_pred             HHHHHHHHHHHHhCC
Q 006744          534 AEKIIEVLNEMTQEG  548 (632)
Q Consensus       534 ~~~a~~~~~~m~~~g  548 (632)
                      +++|.+.|+++.+..
T Consensus       465 ~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          465 IDEAITLFEESADLA  479 (514)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999874

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=7.9e-22  Score=202.87  Aligned_cols=301  Identities=14%  Similarity=0.052  Sum_probs=184.1

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .+...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|.+.|+++.+.+.. +..++..+.
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  101 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG  101 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence            466778888888999999999999999888753 456788888888999999999999999998887544 677888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHH------------HHHccCCHHHHHHHHHHHHhCCCCCCHhc
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADL---GIYNSIIG------------GLCRVKQFDKAYKLFEVTVQDDLAPDFST  345 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~---~~~~~li~------------~~~~~g~~~~A~~~~~~m~~~~~~p~~~~  345 (632)
                      .+|.+.|++++|.+.|+++.+.... +.   ..+..++.            .+.+.|++++|+.+|+++.+... .+...
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  179 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL  179 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence            8999999999999999988876432 33   55555543            36667777777777777665432 24555


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH-------
Q 006744          346 VNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL-------  418 (632)
Q Consensus       346 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------  418 (632)
                      +..+..+|...|++++|..+++++.+.... +...+..+..+|...|++++|...|+++.+..+.+...+..+       
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          180 RELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence            666666677777777777766666554321 233444444455555555555555555544443343333333       


Q ss_pred             -----HHHHHhcCChhhHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 006744          419 -----MGALLEIGEVKKALYLFGKMRGLNLEVN-----SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCL  488 (632)
Q Consensus       419 -----i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  488 (632)
                           ...|.+.|++++|..+|+++.+.  .|+     ...+..+..++.+.|++++|...++++.+.. ..+..+|..+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                 44444444444444444444432  122     1233444444444444444444444444322 1133444444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHh
Q 006744          489 TKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       489 i~~~~~~g~~~~A~~~~~~~~  509 (632)
                      ..+|...|++++|...|++++
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al  356 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQ  356 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHH
Confidence            444444444444444444444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=1.3e-21  Score=201.35  Aligned_cols=345  Identities=12%  Similarity=0.055  Sum_probs=272.0

Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLV  300 (632)
Q Consensus       221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  300 (632)
                      .+...+.+..... +.+...+..+...+.+.|++++|.++|+++.+.... +..++..+..+|...|++++|...|+++.
T Consensus        10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3344444444432 456788999999999999999999999999987443 78899999999999999999999999999


Q ss_pred             HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----hcHHHH------------HHHHHhcCChhHHHH
Q 006744          301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF----STVNPL------------LVCCAEMGRMDNFFK  364 (632)
Q Consensus       301 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l------------l~~~~~~~~~~~a~~  364 (632)
                      +.+.. +..+|..+...|.+.|++++|..+|+++.+..  |+.    ..+..+            ...+...|++++|..
T Consensus        88 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~  164 (450)
T 2y4t_A           88 QLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIA  164 (450)
T ss_dssp             HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            87654 68899999999999999999999999998754  433    444444            344888999999999


Q ss_pred             HHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 006744          365 LLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE  444 (632)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  444 (632)
                      .++++.+.... +...+..+..+|.+.|++++|.+.|+++.+..+.+..+|..++.+|...|++++|...|+++...  .
T Consensus       165 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~  241 (450)
T 2y4t_A          165 FLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--D  241 (450)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            99999876543 56677888889999999999999999998877778899999999999999999999999999864  3


Q ss_pred             cCH-HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744          445 VNS-LSFSIA------------IQCHVESGDILEACECHNKIIEMSQVPS-----VAAYNCLTKGLCKIGEIDAAMMLVR  506 (632)
Q Consensus       445 p~~-~t~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~  506 (632)
                      |+. ..+..+            ...|.+.|++++|..+|+++.+..  |+     ...+..+..++.+.|++++|+..++
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  319 (450)
T 2y4t_A          242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCS  319 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            443 334333            678899999999999999998854  33     4478888999999999999999999


Q ss_pred             HHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----CH
Q 006744          507 DCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISG------------MCKHG-----TL  569 (632)
Q Consensus       507 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~------------~~~~g-----~~  569 (632)
                      ++++..  ..+...|..+..+|...|++++|+..++++.+.. +-+..++..+..+            |...|     +.
T Consensus       320 ~a~~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~  396 (450)
T 2y4t_A          320 EVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK  396 (450)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred             HHHHhC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence            988653  2356778889999999999999999999999863 4456677766633            33334     45


Q ss_pred             HHHHHHHHH
Q 006744          570 EEARKVFTN  578 (632)
Q Consensus       570 ~~A~~~~~~  578 (632)
                      +++.+.+++
T Consensus       397 ~~~~~~y~~  405 (450)
T 2y4t_A          397 QEIIKAYRK  405 (450)
T ss_dssp             THHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666777765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.90  E-value=1.1e-20  Score=199.15  Aligned_cols=397  Identities=11%  Similarity=0.015  Sum_probs=301.5

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744          177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR  256 (632)
Q Consensus       177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  256 (632)
                      .....|++++|+..|+++.+... .+..+|..+..+|.+.|++++|++.|+++.+.+ +.+..++..+..++...|++++
T Consensus        34 ~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~  111 (537)
T 3fp2_A           34 HFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD  111 (537)
T ss_dssp             HHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence            34467899999999999887643 378888889999999999999999999888764 4467788888899999999999


Q ss_pred             HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHh---------------------
Q 006744          257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG------YRADLG---------------------  309 (632)
Q Consensus       257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------~~~~~~---------------------  309 (632)
                      |.+.|+. ...  .|+  .....+..+...+...+|...++++....      ..|+..                     
T Consensus       112 A~~~~~~-~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (537)
T 3fp2_A          112 AMFDLSV-LSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS  186 (537)
T ss_dssp             HHHHHHH-HC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred             HHHHHHH-Hhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence            9999863 332  122  12223444555556677888777775431      111111                     


Q ss_pred             ---------hHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCCCC------HhcHHHHHHHHHhcCChhHHHHHH
Q 006744          310 ---------IYNSIIGGLCRV--------KQFDKAYKLFEVTVQDDLAPD------FSTVNPLLVCCAEMGRMDNFFKLL  366 (632)
Q Consensus       310 ---------~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~------~~~~~~ll~~~~~~~~~~~a~~~~  366 (632)
                               ....+...+...        |++++|..+|+++.+......      ..++..+...+...|++++|...+
T Consensus       187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  266 (537)
T 3fp2_A          187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL  266 (537)
T ss_dssp             CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence                     222222222222        478999999999986542211      224666777888999999999999


Q ss_pred             HHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC
Q 006744          367 AQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN  446 (632)
Q Consensus       367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~  446 (632)
                      +++.+....  ...+..+..++...|++++|.+.|+++.+..+.+..+|..+...+...|++++|...|+++.+.. +.+
T Consensus       267 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~  343 (537)
T 3fp2_A          267 QESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PEN  343 (537)
T ss_dssp             HHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC
Confidence            999987654  66777888889999999999999999998887789999999999999999999999999998864 345


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ChHHHHH
Q 006744          447 SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----PTEFKYA  522 (632)
Q Consensus       447 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----p~~~~~~  522 (632)
                      ...+..+...+...|++++|..+++++.+.. ..+...+..+...+...|++++|.+.|+++++..+..    -....+.
T Consensus       344 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  422 (537)
T 3fp2_A          344 VYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI  422 (537)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            6788889999999999999999999999864 3357788899999999999999999999987542211    1222234


Q ss_pred             HHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          523 LTILHVCRS----------GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       523 ~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      .+...+...          |++++|+..++++.+.. +.+..++..+..+|.+.|++++|.+.|++..+....
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  494 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART  494 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            455667777          99999999999999874 567889999999999999999999999999998754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.88  E-value=2.9e-19  Score=188.21  Aligned_cols=355  Identities=12%  Similarity=0.025  Sum_probs=267.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      .|++++|++.|+++.+.+. .+..+|..+...+...|++++|++.|+.+..   .|+.  ....+..+...+...+|...
T Consensus        72 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~  145 (537)
T 3fp2_A           72 TGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFDLSVLSL---NGDF--DGASIEPMLERNLNKQAMKV  145 (537)
T ss_dssp             HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHHHHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHH
Confidence            4566666667777666543 3688999999999999999999999974432   2322  22234455555666778888


Q ss_pred             HHHHHHc------CCcccHH------------------------------hHHHHHHHHHh--------cCCHHHHHHHH
Q 006744          261 FREMKEN------GILIDRA------------------------------IYGVLIEGLVG--------EGKVGKACDLL  296 (632)
Q Consensus       261 ~~~m~~~------~~~p~~~------------------------------~~~~li~~~~~--------~g~~~~a~~~~  296 (632)
                      ++++...      ...|+..                              ....+...+..        .|++++|..+|
T Consensus       146 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~  225 (537)
T 3fp2_A          146 LNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY  225 (537)
T ss_dssp             HHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            8877442      1112211                              22222222222        24789999999


Q ss_pred             HHHHHCCCCCC-------HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          297 KDLVDSGYRAD-------LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQM  369 (632)
Q Consensus       297 ~~m~~~g~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  369 (632)
                      +++.+.... +       ..+|..+...+...|++++|...|+++.+..  |+...+..+...+...|++++|...++++
T Consensus       226 ~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  302 (537)
T 3fp2_A          226 HSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKA  302 (537)
T ss_dssp             HHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred             HHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999876543 2       2356677788899999999999999998754  55778888889999999999999999999


Q ss_pred             HHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHH
Q 006744          370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLS  449 (632)
Q Consensus       370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t  449 (632)
                      .+.... +...+..+..++...|++++|...|+++.+..+.+..+|..+...|...|++++|..+++++.+.. +.+...
T Consensus       303 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  380 (537)
T 3fp2_A          303 VDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEV  380 (537)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred             hccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence            887643 566788888889999999999999999998887788899999999999999999999999998864 445678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHhhcCCC
Q 006744          450 FSIAIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNCLTKGLCKI----------GEIDAAMMLVRDCLGNVAS  514 (632)
Q Consensus       450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~  514 (632)
                      +..+...+...|++++|...|+++.+....     .....+..+...+...          |++++|+..|+++++..+ 
T Consensus       381 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-  459 (537)
T 3fp2_A          381 PTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-  459 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-
Confidence            888999999999999999999998864311     1222344556677777          999999999999987643 


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                       .+...|..+...+...|++++|++.|+++.+..
T Consensus       460 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  492 (537)
T 3fp2_A          460 -RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA  492 (537)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence             345677889999999999999999999999874

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=7.9e-19  Score=174.28  Aligned_cols=320  Identities=12%  Similarity=0.043  Sum_probs=239.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      |...+..+...+...|++++|...|+++.+.... +..++..+..++...|++++|...|+++.+.... +...|..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence            4566777888888889999999999988886544 6778888888888999999999999888876543 6678888888


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCC--CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744          317 GLCRVKQFDKAYKLFEVTVQDDLA--PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI  394 (632)
Q Consensus       317 ~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (632)
                      .|...|++++|...|+++.+....  .+...+..+....       .+                .........+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~----------------~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------EM----------------QRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHccCH
Confidence            888889999999999888765320  1222222221111       00                0112234456677888


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII  474 (632)
Q Consensus       395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  474 (632)
                      ++|.+.++++.+..+.+..++..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus       137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888888877766677888888888888888888888888887753 4566778888888888888888888888888


Q ss_pred             HCCCCCCHHhHH------------HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH--HHHHHHHHHHHHcCCHHHHHHH
Q 006744          475 EMSQVPSVAAYN------------CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE--FKYALTILHVCRSGEAEKIIEV  540 (632)
Q Consensus       475 ~~~~~p~~~~~~------------~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~  540 (632)
                      +.... +...+.            .+...+.+.|++++|...++++++..+..+..  ..|..+...+...|++++|++.
T Consensus       216 ~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  294 (359)
T 3ieg_A          216 KLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI  294 (359)
T ss_dssp             HHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            75422 233222            23666889999999999999988765443332  2355577888899999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ++++.+.. +.+..+|..+..++...|++++|.+.|+++.+...
T Consensus       295 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          295 CSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            99998873 55788999999999999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=3e-18  Score=170.03  Aligned_cols=333  Identities=10%  Similarity=0.023  Sum_probs=234.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      |+..+..+...+...|++++|++.|+++.+.. +.+..++..+..++...|++++|.+.++++.+.... +...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence            46678889999999999999999999998764 456889999999999999999999999999987543 6788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC--CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYR--ADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM  359 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  359 (632)
                      +|...|++++|...|+++.+....  .+...+..+...+.                       ...+..+...+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence            999999999999999999986431  13344444421100                       00122233344455555


Q ss_pred             hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHh
Q 006744          360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMR  439 (632)
Q Consensus       360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  439 (632)
                      ++|...++++.+.... +...+..+..++...|++++|...++++.+..+.+..+|..+...+...|++++|...|++..
T Consensus       137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555555443322 334444455555566666666666666666555566777777777777777777777777776


Q ss_pred             hCCCCcCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHhcCCHHHHHH
Q 006744          440 GLNLEVNSLSFS------------IAIQCHVESGDILEACECHNKIIEMSQVPSV----AAYNCLTKGLCKIGEIDAAMM  503 (632)
Q Consensus       440 ~~~~~p~~~t~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~  503 (632)
                      +.. +.+...+.            .+...+...|++++|...++++.+.... +.    ..+..+..++...|++++|+.
T Consensus       216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~  293 (359)
T 3ieg_A          216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIR  293 (359)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHH
Confidence            642 22222222            2355678889999999999988875432 22    234557788889999999999


Q ss_pred             HHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006744          504 LVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK  565 (632)
Q Consensus       504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~  565 (632)
                      .++++++..  ..+...|..+...+...|++++|++.|+++.+.. +.+...+..+..+...
T Consensus       294 ~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          294 ICSEVLQME--PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            999888753  2345677778888899999999999999998874 4456666666665443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=8.6e-16  Score=159.28  Aligned_cols=354  Identities=10%  Similarity=-0.040  Sum_probs=273.1

Q ss_pred             CHHhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCcccH
Q 006744          202 DVFAYTAMIRVLAA----ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK----GGRVVRGHELFREMKENGILIDR  273 (632)
Q Consensus       202 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~  273 (632)
                      +..++..+...|..    .+++++|++.|++..+.|   +...+..|...|..    .++.++|.+.|++..+.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            55666666666766    788888888888877754   55677777777777    788888888888887765   55


Q ss_pred             HhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhc
Q 006744          274 AIYGVLIEGLVG----EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFST  345 (632)
Q Consensus       274 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~  345 (632)
                      ..+..|...|..    .++.++|...|++..+.|   +...+..|...|..    .+++++|+++|++..+.|   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            666677777777    778888888888887764   45667777777776    678888888888887764   5566


Q ss_pred             HHHHHHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhh----cccHHHHHHHHHHHHhCCCCChhHHHH
Q 006744          346 VNPLLVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVPIYNI  417 (632)
Q Consensus       346 ~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  417 (632)
                      +..+...|..    .++.++|..++++..+.+.   ......+..+|..    .++.++|...|++..+.+  +...+..
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~  260 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSGD---ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--NSIAQFR  260 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--CHHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence            7777777776    7788888888888877653   3445555556654    788888998888887765  5667777


Q ss_pred             HHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHhHHHH
Q 006744          418 LMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES-----GDILEACECHNKIIEMSQVPSVAAYNCL  488 (632)
Q Consensus       418 li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l  488 (632)
                      +...|..    .++.++|+..|++..+.|   +...+..+...|...     ++.++|...|++..+.+   +...+..|
T Consensus       261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l  334 (490)
T 2xm6_A          261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL  334 (490)
T ss_dssp             HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence            8888877    889999999999988765   445666777777776     89999999999998865   45667778


Q ss_pred             HHHHHhcC---CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744          489 TKGLCKIG---EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR----SGEAEKIIEVLNEMTQEGCPPNEVICSAIIS  561 (632)
Q Consensus       489 i~~~~~~g---~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  561 (632)
                      ...|...|   ++++|++.|++..+.    .+...+..+...|..    .+++++|++.|++..+.|   +...+..|..
T Consensus       335 g~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~  407 (490)
T 2xm6_A          335 GAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE  407 (490)
T ss_dssp             HHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            88887766   789999999998865    245566668888887    789999999999999876   5778888888


Q ss_pred             HHHh----cCCHHHHHHHHHHHHHCCCC
Q 006744          562 GMCK----HGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       562 ~~~~----~g~~~~A~~~~~~m~~~~~~  585 (632)
                      .|.+    .++.++|.+.|++..+.+..
T Consensus       408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          408 IYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            8888    89999999999999998743

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=6.1e-16  Score=160.41  Aligned_cols=358  Identities=9%  Similarity=-0.022  Sum_probs=284.3

Q ss_pred             CCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHH
Q 006744          150 HNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAA----ERNLDACLRV  225 (632)
Q Consensus       150 ~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~  225 (632)
                      -+...+..|...|..-..            ..+++++|+..|++..+.   -+..++..|...|..    .+++++|.+.
T Consensus        37 g~~~a~~~lg~~y~~g~~------------~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNE------------TTKDLTQAMDWFRRAAEQ---GYTPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSS------------SCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCC------------CCcCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            366677777777665100            123444455555555444   256677788888888    8999999999


Q ss_pred             HHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHH
Q 006744          226 WEEMKKDLVEADVMAYVTLIMGLCK----GGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG----EGKVGKACDLLK  297 (632)
Q Consensus       226 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~  297 (632)
                      |++..+.|   +...+..|...|..    .+++++|.+.|++..+.|   +...+..|...|..    .++.++|.+.|+
T Consensus       102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  175 (490)
T 2xm6_A          102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS  175 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            99998865   56777778888887    789999999999998875   56677888888887    789999999999


Q ss_pred             HHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh----cCChhHHHHHHHHH
Q 006744          298 DLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE----MGRMDNFFKLLAQM  369 (632)
Q Consensus       298 ~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~  369 (632)
                      +..+.|   +...+..|...|..    .+++++|.++|++..+.|   +...+..+...|..    .+++++|..++++.
T Consensus       176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  249 (490)
T 2xm6_A          176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS  249 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            998874   67788888888887    899999999999988765   45677777777776    78999999999998


Q ss_pred             HHCCCCccccHHHHHHHHhhh----cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----CChhhHHHHHHHHhh
Q 006744          370 EKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVPIYNILMGALLEI-----GEVKKALYLFGKMRG  440 (632)
Q Consensus       370 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~  440 (632)
                      .+.+.   ......+..+|..    .++.++|.+.|++..+.+  +...+..+...|...     +++++|...|++..+
T Consensus       250 ~~~~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~  324 (490)
T 2xm6_A          250 AEQGN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE  324 (490)
T ss_dssp             HTTTC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred             HHCCC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence            88763   3455556666666    899999999999998775  677888888888887     899999999999988


Q ss_pred             CCCCcCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCC
Q 006744          441 LNLEVNSLSFSIAIQCHVESG---DILEACECHNKIIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVA  513 (632)
Q Consensus       441 ~~~~p~~~t~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~  513 (632)
                      .|   +...+..+...|...|   +.++|.++|++..+.+   +...+..|...|..    .+++++|...|++..+.. 
T Consensus       325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-  397 (490)
T 2xm6_A          325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-  397 (490)
T ss_dssp             TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence            75   4456677777777766   7899999999999864   67788889999988    899999999999988752 


Q ss_pred             CCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 006744          514 SGPTEFKYALTILHVCR----SGEAEKIIEVLNEMTQEGC  549 (632)
Q Consensus       514 ~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~  549 (632)
                         +...+..+...|..    .++.++|...|++..+.+.
T Consensus       398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence               45566678888887    7999999999999998863

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.83  E-value=8.1e-18  Score=164.91  Aligned_cols=292  Identities=12%  Similarity=-0.036  Sum_probs=159.5

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744          236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII  315 (632)
Q Consensus       236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  315 (632)
                      .+...+..+...+...|++++|.++|+++.+.... +...+..++.++...|++++|..+++++.+.... +...|..+.
T Consensus        20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~   97 (330)
T 3hym_B           20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVG   97 (330)
T ss_dssp             CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHH
Confidence            34455555666666666666666666666554332 3445555556666666666666666666654332 445555566


Q ss_pred             HHHHccC-CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744          316 GGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI  394 (632)
Q Consensus       316 ~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (632)
                      ..+...| ++++|...|++..+.... +...+..+...+...|++++|...++++.+.                      
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------------  154 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----------------------  154 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------------
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------
Confidence            6666666 666666666665544311 2334445555555555555555555554443                      


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII  474 (632)
Q Consensus       395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  474 (632)
                                   .+.+...+..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.
T Consensus       155 -------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          155 -------------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             -------------TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------------ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                         32233444445555555555555555555555432 2334455555555555555555555555555


Q ss_pred             HCC--------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          475 EMS--------QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       475 ~~~--------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      +..        ...+..++..+..+|...|++++|+..++++++..+.  +...|..+...+...|++++|.+.++++.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~  298 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--NASTYSAIGYIHSLMGNFENAVDYFHTALG  298 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence            421        0222455666666666666666666666666654322  234455566666666666666666666665


Q ss_pred             CCCCCCHHHHHHHHHHH-HhcCCH
Q 006744          547 EGCPPNEVICSAIISGM-CKHGTL  569 (632)
Q Consensus       547 ~g~~p~~~~~~~l~~~~-~~~g~~  569 (632)
                      .. +.+...+..+..++ ...|+.
T Consensus       299 ~~-p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          299 LR-RDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             TC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred             cC-CCchHHHHHHHHHHHHHhCch
Confidence            53 34555666666655 344443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.9e-17  Score=162.23  Aligned_cols=294  Identities=9%  Similarity=-0.027  Sum_probs=220.2

Q ss_pred             CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744          199 CKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGV  278 (632)
Q Consensus       199 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  278 (632)
                      ...+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++.+.... +..++..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence            34566778888999999999999999999998764 445677778889999999999999999999987544 6788999


Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcC
Q 006744          279 LIEGLVGEG-KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG  357 (632)
Q Consensus       279 li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  357 (632)
                      +...+...| ++++|...|+++.+.... +...|..+...+...|++++|+..|+++.+.... +...+..+...+...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            999999999 999999999999987654 6778999999999999999999999999876432 3345555666666666


Q ss_pred             ChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHH
Q 006744          358 RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGK  437 (632)
Q Consensus       358 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  437 (632)
                      ++++|...++++.+..                                   +.+..++..+...+...|++++|...+++
T Consensus       174 ~~~~A~~~~~~al~~~-----------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  218 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-----------------------------------PEDPFVMHEVGVVAFQNGEWKTAEKWFLD  218 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-----------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC-----------------------------------CCChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            6666666666655543                                   33566677777777777777777777777


Q ss_pred             HhhCC--------CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          438 MRGLN--------LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       438 m~~~~--------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      +....        .+.+..++..+...+...|++++|...++++.+... .+...+..+..+|.+.|++++|.+.|++++
T Consensus       219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al  297 (330)
T 3hym_B          219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTAL  297 (330)
T ss_dssp             HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred             HHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            65531        123345777777788888888888888888877542 356677788888888888888888888876


Q ss_pred             hcCCCCChHHHHHHHHHHH-HHcCCH
Q 006744          510 GNVASGPTEFKYALTILHV-CRSGEA  534 (632)
Q Consensus       510 ~~~~~~p~~~~~~~l~~~~-~~~g~~  534 (632)
                      +..+  .+...+..+..++ ...|+.
T Consensus       298 ~~~p--~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          298 GLRR--DDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             TTCS--CCHHHHHHHHHHHHTTTTC-
T ss_pred             ccCC--CchHHHHHHHHHHHHHhCch
Confidence            5422  2344555555555 233443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=6e-16  Score=162.17  Aligned_cols=409  Identities=10%  Similarity=0.030  Sum_probs=253.4

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 006744          149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEE  228 (632)
Q Consensus       149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  228 (632)
                      +-|...|..++.. .+.|+++.                |..+|+++.+. .+-+...|..++..+.+.|++++|.++|++
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~----------------a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~r   71 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDK----------------ARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQR   71 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHH----------------HHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHhCCHHH----------------HHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            4577788888773 55555544                44555555544 234677899999999999999999999999


Q ss_pred             HHhCCCCcCHHhHHHHHHHH-HhcCChhHHHH----HHHHHHH-cCCcc-cHHhHHHHHHHHHh---------cCCHHHH
Q 006744          229 MKKDLVEADVMAYVTLIMGL-CKGGRVVRGHE----LFREMKE-NGILI-DRAIYGVLIEGLVG---------EGKVGKA  292 (632)
Q Consensus       229 m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~-~~~~p-~~~~~~~li~~~~~---------~g~~~~a  292 (632)
                      ..+.  .|+...|...+... ...|+.++|.+    +|+...+ .|..| +...|...+....+         .|+++.|
T Consensus        72 al~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a  149 (530)
T 2ooe_A           72 CLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV  149 (530)
T ss_dssp             HTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred             HHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence            9876  36877777777533 35677777765    6666654 35443 45677777776654         6889999


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHH-------------HccCCHHHHHHHHHHHH------hCC---CCCC--------
Q 006744          293 CDLLKDLVDSGYRADLGIYNSIIGGL-------------CRVKQFDKAYKLFEVTV------QDD---LAPD--------  342 (632)
Q Consensus       293 ~~~~~~m~~~g~~~~~~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~p~--------  342 (632)
                      ..+|++..+.........|.......             .+.++++.|..++.++.      +..   +.|+        
T Consensus       150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~  229 (530)
T 2ooe_A          150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ  229 (530)
T ss_dssp             HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence            99999998731111123343322211             12345667776666532      211   2332        


Q ss_pred             HhcHHHHHHHHHhc----CCh----hHHHHHHHHHHHCCCCccccHHHHHHHHhhh-------cccHH-------HHHHH
Q 006744          343 FSTVNPLLVCCAEM----GRM----DNFFKLLAQMEKLKFSVAADLEKFFEFLVGK-------EERIM-------MALDV  400 (632)
Q Consensus       343 ~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~  400 (632)
                      ...|...+......    ++.    +.+..+|+++..... .+..++..++..+.+       .|+++       +|..+
T Consensus       230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~  308 (530)
T 2ooe_A          230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI  308 (530)
T ss_dssp             HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence            12333333222221    122    255667777666532 234444444444443       57765       77777


Q ss_pred             HHHHHh-CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          401 FEELKG-KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNS--LSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       401 ~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      |++..+ ..+.+...|..++..+.+.|++++|..+|+++.+.  .|+.  ..|...+..+.+.|++++|.++|++..+..
T Consensus       309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~  386 (530)
T 2ooe_A          309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA  386 (530)
T ss_dssp             HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence            777776 44446777777777777788888888888877763  4432  366777777777777888888887777642


Q ss_pred             CCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC--CH
Q 006744          478 QVPSVAAYNCLTKG-LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-CPP--NE  553 (632)
Q Consensus       478 ~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~  553 (632)
                      . .+...|...+.. +...|+.++|..+|++.++..+  .+...|..++..+.+.|+.++|..+|++....+ ..|  ..
T Consensus       387 ~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~  463 (530)
T 2ooe_A          387 R-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  463 (530)
T ss_dssp             T-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCH
T ss_pred             C-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHH
Confidence            1 122222222211 2357778888888877776532  234556667777777778888888888777653 122  24


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          554 VICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      ..|...+......|+.+.+.++++++.+.-
T Consensus       464 ~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          464 EIWARFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            467777777777788877777777776653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.82  E-value=3.4e-16  Score=164.01  Aligned_cols=403  Identities=11%  Similarity=0.064  Sum_probs=283.8

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      -|..+|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|++++|.++|+++.+..  |+...|..++
T Consensus        11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~   86 (530)
T 2ooe_A           11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL   86 (530)
T ss_dssp             TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence            37889999998 478999999999999999763 4577889999999999999999999999998864  5777777777


Q ss_pred             HHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHhhHHHHHHHHHc---------cCCHHHHHHHHHHHHhCCCCCCHh
Q 006744          281 EGL-VGEGKVGKACD----LLKDLVDS-GYRA-DLGIYNSIIGGLCR---------VKQFDKAYKLFEVTVQDDLAPDFS  344 (632)
Q Consensus       281 ~~~-~~~g~~~~a~~----~~~~m~~~-g~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~  344 (632)
                      ... ...|+.++|.+    +|+..... |..| +...|...+....+         .|++++|..+|++..+........
T Consensus        87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~  166 (530)
T 2ooe_A           87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ  166 (530)
T ss_dssp             HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred             HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence            533 34677766655    77776553 5443 46678877776654         688999999999998731111122


Q ss_pred             cHHHHHHHH-------------HhcCChhHHHHHHHHHH------HCC---CCccc--------cHHHHHHHHhhh----
Q 006744          345 TVNPLLVCC-------------AEMGRMDNFFKLLAQME------KLK---FSVAA--------DLEKFFEFLVGK----  390 (632)
Q Consensus       345 ~~~~ll~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~~--------~~~~~l~~~~~~----  390 (632)
                      .|.......             ...++++.|..++..+.      +..   ++|..        ..+...+.....    
T Consensus       167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~  246 (530)
T 2ooe_A          167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR  246 (530)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence            333222211             12345666776666532      111   12221        122222221111    


Q ss_pred             cccH----HHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCChh-------hHHHHHHHHhhCCCCcCHHHHHH
Q 006744          391 EERI----MMALDVFEELKGKGYSSVPIYNILMGALLE-------IGEVK-------KALYLFGKMRGLNLEVNSLSFSI  452 (632)
Q Consensus       391 ~g~~----~~a~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~t~~~  452 (632)
                      .++.    +.+..+|++.....+.+...|..++..+.+       .|+++       +|..+|++..+.-.+-+...+..
T Consensus       247 ~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~  326 (530)
T 2ooe_A          247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA  326 (530)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHH
Confidence            1222    477889999888777789999999998886       79987       89999999986323445778888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 006744          453 AIQCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR  530 (632)
Q Consensus       453 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  530 (632)
                      ++..+.+.|++++|..+|+++++.  .|+  ...|..++..+.+.|++++|.++|++.++.....+.......++ .+..
T Consensus       327 ~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~-~~~~  403 (530)
T 2ooe_A          327 YADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM-EYYC  403 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHH-HHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHH-HHHH
Confidence            889999999999999999999985  343  35888899999999999999999999987644333322222222 2336


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CCChhhHHHHHHHHhhhchhHHH
Q 006744          531 SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT-EANTIVYDEILIEHMKKKTADLV  609 (632)
Q Consensus       531 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~v  609 (632)
                      .|+.++|..+|++..+.. +.+...|..++..+.+.|+.++|+.+|++....+..+ ......+...+.-....++.+.+
T Consensus       404 ~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~  482 (530)
T 2ooe_A          404 SKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI  482 (530)
T ss_dssp             TCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHH
T ss_pred             cCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            899999999999998873 5578899999999999999999999999999986432 22233444433333334544444


Q ss_pred             Hh
Q 006744          610 LS  611 (632)
Q Consensus       610 ~~  611 (632)
                      .+
T Consensus       483 ~~  484 (530)
T 2ooe_A          483 LK  484 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=9e-18  Score=167.43  Aligned_cols=273  Identities=10%  Similarity=-0.010  Sum_probs=134.9

Q ss_pred             HHHhcCChhHHHH-HHHHHHhCCC-Cc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC
Q 006744          212 VLAAERNLDACLR-VWEEMKKDLV-EA--DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG  287 (632)
Q Consensus       212 ~~~~~g~~~~A~~-~~~~m~~~~~-~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  287 (632)
                      .+...|++++|++ .|++..+..- .|  +...+..+...+...|++++|...|+++.+.... +..++..+..+|.+.|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCc
Confidence            3445566666666 6664443210 01  2345666666677777777777777777665433 5566666667777777


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHH
Q 006744          288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA  367 (632)
Q Consensus       288 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  367 (632)
                      ++++|...|+++.+.... +..++..+...|...|++++|...++++.+.... +...+..+...       ...     
T Consensus       113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~-----  178 (368)
T 1fch_A          113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AGG-----  178 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------------
T ss_pred             CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hhh-----
Confidence            777777777776665433 5566666666677777777777777666654322 11111111000       000     


Q ss_pred             HHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCc
Q 006744          368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEV  445 (632)
Q Consensus       368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  445 (632)
                        ..     .......+...+ ..|++++|...|+++.+..+.  +..++..+...|...|++++|...|+++.... +.
T Consensus       179 --~~-----~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~  249 (368)
T 1fch_A          179 --AG-----LGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PN  249 (368)
T ss_dssp             --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             --hc-----ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cC
Confidence              00     000000111122 455566666666655555444  45555666666666666666666666555432 22


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          446 NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       446 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      +...+..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|++++
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  312 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEAL  312 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34445555555555555555555555555432 1234444555555555555555555555444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=8e-18  Score=167.81  Aligned_cols=303  Identities=14%  Similarity=0.040  Sum_probs=207.3

Q ss_pred             cCCHHHHHH-HHHHHHhCCC---CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhH
Q 006744          181 QGRIAEMLE-ILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVR  256 (632)
Q Consensus       181 ~g~~~~a~~-~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  256 (632)
                      .|++++|++ .|++..+...   ..+...+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            467888888 7776554322   1145678889999999999999999999999875 4578899999999999999999


Q ss_pred             HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      |.+.|+++.+.+.. +..++..+..+|...|++++|.+.|+++...... +...+..+...       ..          
T Consensus       117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~----------  177 (368)
T 1fch_A          117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG----------  177 (368)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC------------------------
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh----------
Confidence            99999999987644 7889999999999999999999999999987543 22232211000       00          


Q ss_pred             CCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc-cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHH
Q 006744          337 DDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV-AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIY  415 (632)
Q Consensus       337 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  415 (632)
                       ...+. ..+. .+..+...|++++|...++++.+..... +...+..+..+|...|++++|...|+++.+..+.+..+|
T Consensus       178 -~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  254 (368)
T 1fch_A          178 -GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLW  254 (368)
T ss_dssp             ----------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             -hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHH
Confidence             00000 0011 1111224555555555555555543321 234445555556666666666666666666555577788


Q ss_pred             HHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHhH
Q 006744          416 NILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP----------SVAAY  485 (632)
Q Consensus       416 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~  485 (632)
                      ..+...+...|++++|...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+.....          ...+|
T Consensus       255 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~  333 (368)
T 1fch_A          255 NKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW  333 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHH
Confidence            888888888888888888888887753 3456778888888888888888888888887643211          25778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q 006744          486 NCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       486 ~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      ..+..+|...|++++|..++++
T Consensus       334 ~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          334 STLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHhCChHhHHHhHHH
Confidence            8888888888988888887764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.4e-17  Score=162.18  Aligned_cols=289  Identities=13%  Similarity=0.081  Sum_probs=122.7

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006744          120 DLVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC  199 (632)
Q Consensus       120 ~~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~  199 (632)
                      +.+..++...++.+.|.++++..       ++..+|..|+.++.+.|++++|++.|.+.                     
T Consensus         7 ~a~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika---------------------   58 (449)
T 1b89_A            7 SAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---------------------   58 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC---------------------
Confidence            34555667778899999999876       23359999999999998888877776421                     


Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHH
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVL  279 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  279 (632)
                       +|..+|..++..+...|++++|+..++..++.  .++..+.+.++.+|.+.|+++++.++++       .|+..+|..+
T Consensus        59 -~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I  128 (449)
T 1b89_A           59 -DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV  128 (449)
T ss_dssp             -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred             -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence             46678888888888899999999977766654  4567778888899999999988888875       2566788999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744          280 IEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM  359 (632)
Q Consensus       280 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  359 (632)
                      .+.|...|.+++|..+|..+         ..|..|+.++.+.|++++|++.++++      .+..+|..++.+|...|++
T Consensus       129 Gd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          129 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             --------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcH
Confidence            99999999999999999866         47888999999999999999999887      2677888999999999999


Q ss_pred             hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc--CChhhHHHHHHH
Q 006744          360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI--GEVKKALYLFGK  437 (632)
Q Consensus       360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~A~~~~~~  437 (632)
                      +.|......     +...+.-...++..|.+.|++++|..+++............|+-|.-+|++-  ++..+.++.|..
T Consensus       194 ~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~  268 (449)
T 1b89_A          194 RLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS  268 (449)
T ss_dssp             HHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred             HHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            888544433     2233344555777888888899998888888877655778888888887775  334444444431


Q ss_pred             HhhCCCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 006744          438 MRGLNLEV------NSLSFSIAIQCHVESGDILEACE  468 (632)
Q Consensus       438 m~~~~~~p------~~~t~~~ll~~~~~~g~~~~a~~  468 (632)
                      -  .+++|      +...|..+...|.+.++++.|..
T Consensus       269 ~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          269 R--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             T--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             H--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            1  12332      34456667777777777777665

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=8.8e-18  Score=167.34  Aligned_cols=238  Identities=11%  Similarity=0.008  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744          241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR  320 (632)
Q Consensus       241 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  320 (632)
                      +..+...+.+.|++++|.++|+++.+.... +..+|..+..+|.+.|++++|+..|+++.+.... +..+|..+...|..
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~  145 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYTN  145 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHc
Confidence            444455555555555555555555444322 3444555555555555555555555555443322 34444444455555


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHh-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHH
Q 006744          321 VKQFDKAYKLFEVTVQDDLAPDFS-TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD  399 (632)
Q Consensus       321 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  399 (632)
                      .|++++|+..|+++.+..  |+.. .+..+.                         ....+...+..++...|++++|.+
T Consensus       146 ~g~~~~A~~~~~~al~~~--p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~~  198 (365)
T 4eqf_A          146 TSHQQDACEALKNWIKQN--PKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVKE  198 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHC--HHHHCC--------------------------------------------CCHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhC--ccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHHH
Confidence            555555555554444321  1100 000000                         001111222334445555555555


Q ss_pred             HHHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          400 VFEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       400 ~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      .|+++.+..+.  +..+|..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++++..
T Consensus       199 ~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          199 LYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            55555544444  44555555555555555555555555554432 2234444444444555555555555555444432


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          478 QVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       478 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                       +.+..++..+..+|...|++++|...|++++
T Consensus       278 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  308 (365)
T 4eqf_A          278 -PGFIRSRYNLGISCINLGAYREAVSNFLTAL  308 (365)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             1124444444444444444444444444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=9.1e-18  Score=167.24  Aligned_cols=267  Identities=11%  Similarity=-0.015  Sum_probs=192.5

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +...|..+...+.+.|++++|+++|+++.+.. +.+..+|..+..++...|++++|++.|+++.+.... +..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence            45568899999999999999999999998865 457889999999999999999999999999987543 6889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH----------HHHHHccCCHHHHHHHHHHHHhCCCC-CCHhcHHHHH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI----------IGGLCRVKQFDKAYKLFEVTVQDDLA-PDFSTVNPLL  350 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l----------i~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll  350 (632)
                      +|...|++++|...|+++.+.... +...+..+          ...+.+.|++++|+.+|+++.+.... .+..++..+.
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPK-YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHH-HHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCcc-chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            999999999999999999886422 22233322          55666677777777777766654321 1344555555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 006744          351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK  430 (632)
Q Consensus       351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  430 (632)
                      ..+...|++++|...++++                                   .+..+.+..+|+.+..+|...|++++
T Consensus       221 ~~~~~~g~~~~A~~~~~~a-----------------------------------l~~~p~~~~~~~~l~~~~~~~g~~~~  265 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAA-----------------------------------LTVRPEDYSLWNRLGATLANGDRSEE  265 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHH-----------------------------------HHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHH-----------------------------------HHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            5555555555555555544                                   44444466677888888888888888


Q ss_pred             HHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----------CCHHhHHHHHHHHHhcCCHH
Q 006744          431 ALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-----------PSVAAYNCLTKGLCKIGEID  499 (632)
Q Consensus       431 A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~li~~~~~~g~~~  499 (632)
                      |...|+++.+.. +.+..++..+..+|...|++++|...|+++.+....           .+..+|..+..++...|+.+
T Consensus       266 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  344 (365)
T 4eqf_A          266 AVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPE  344 (365)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence            888888777643 334667777777888888888888888877754211           13567888888888889888


Q ss_pred             HHHHHHHH
Q 006744          500 AAMMLVRD  507 (632)
Q Consensus       500 ~A~~~~~~  507 (632)
                      .+.++.++
T Consensus       345 ~a~~~~~~  352 (365)
T 4eqf_A          345 LFQAANLG  352 (365)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHh
Confidence            88877654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.78  E-value=1.5e-14  Score=157.01  Aligned_cols=433  Identities=12%  Similarity=0.114  Sum_probs=298.3

Q ss_pred             CCChHHHHHHHhcCCChhHHHHHHHHhhhcC-CCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCC-------HHHH
Q 006744          116 RVTPDLVAEVLKVENNPTLASKFFHWAGKQK-GYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGR-------IAEM  187 (632)
Q Consensus       116 ~~~~~~~~~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~-------~~~a  187 (632)
                      +-++++=..||...+..+  ..+.+|...-. --.-++.--...+.+|...|.+.+|.++++.+.-.+.       .+.+
T Consensus       950 r~d~~lW~~vl~~~n~~R--R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A          950 RKDPELWGSVLLESNPYR--RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred             hcCHHHHHHHhcCCcHHH--HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence            456777777776655333  24445532110 0123344445677888888888888888888774332       1111


Q ss_pred             HHHHHHHHhCCCC--------cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          188 LEILEKMRRNLCK--------PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE  259 (632)
Q Consensus       188 ~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  259 (632)
                        +.....+....        .+.....-+...+...|.+++|..+|++..     -.....+.++.   ..+++++|.+
T Consensus      1028 --Li~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE 1097 (1630)
T 1xi4_A         1028 --LILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYE 1097 (1630)
T ss_pred             --HHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHH
Confidence              11111111110        111113335677888999999999999863     22233344433   6678999999


Q ss_pred             HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744          260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL  339 (632)
Q Consensus       260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  339 (632)
                      +.++.      -+..+|..+..++.+.|++++|++.|.+.      -|...|..++.++.+.|++++|.++|....+.. 
T Consensus      1098 ~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~- 1164 (1630)
T 1xi4_A         1098 FAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA- 1164 (1630)
T ss_pred             HHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-
Confidence            98865      25778999999999999999999999664      277888889999999999999999999877654 


Q ss_pred             CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744          340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM  419 (632)
Q Consensus       340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  419 (632)
                       ++....+.++.+|++.++++....++    + +  ++...+..+...|...|++++|...|...        ..|..+.
T Consensus      1165 -~e~~Idt~LafaYAKl~rleele~fI----~-~--~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA 1228 (1630)
T 1xi4_A         1165 -RESYVETELIFALAKTNRLAELEEFI----N-G--PNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 1228 (1630)
T ss_pred             -ccccccHHHHHHHHhhcCHHHHHHHH----h-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHH
Confidence             33333445888999999888644443    1 1  23344456888889999999999999985        3599999


Q ss_pred             HHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 006744          420 GALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEID  499 (632)
Q Consensus       420 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~  499 (632)
                      .+|++.|++++|.+.+++.      -+..+|..+-.+|...|++..|..+...+     ..+...+..++..|.+.|.++
T Consensus      1229 ~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~fe 1297 (1630)
T 1xi4_A         1229 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFE 1297 (1630)
T ss_pred             HHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999876      35688999999999999999998876643     346667889999999999999


Q ss_pred             HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHH
Q 006744          500 AAMMLVRDCLGNVASGPTEFKYALTILHVCRS--GEAEKIIEVLNEMTQEGCPP------NEVICSAIISGMCKHGTLEE  571 (632)
Q Consensus       500 ~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~  571 (632)
                      +|+.+++..+...  .-....|+-+...|++.  ++..+++++|..-..  +++      +...|..++..|.+.|+++.
T Consensus      1298 EAI~LlE~aL~Le--raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dn 1373 (1630)
T 1xi4_A         1298 ELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDN 1373 (1630)
T ss_pred             HHHHHHHHHhccC--hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHH
Confidence            9999999877543  23344566677777655  566677777664332  222      56789999999999999999


Q ss_pred             HHHHH--------HHHHHC-CCCCCCChhhHHHHHHHHhhhc
Q 006744          572 ARKVF--------TNLRER-KLLTEANTIVYDEILIEHMKKK  604 (632)
Q Consensus       572 A~~~~--------~~m~~~-~~~~~~~~~~~~~l~~~~~~~~  604 (632)
                      |....        +.-.-+ -+....+...|...+.-++...
T Consensus      1374 A~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1374 AIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhhC
Confidence            98332        211111 1223345556666666665544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.76  E-value=1.3e-18  Score=182.57  Aligned_cols=153  Identities=12%  Similarity=0.107  Sum_probs=129.1

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKK---DLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY  276 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  276 (632)
                      .--..+||+||++||+.|++++|.++|++|.+   .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            34467899999999999999999999988764   478999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC------HhcHHHH
Q 006744          277 GVLIEGLVGEGK-VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD------FSTVNPL  349 (632)
Q Consensus       277 ~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l  349 (632)
                      ++||+++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.    .+++.++++ ..+..|+      ..+...|
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL  278 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence            999999999998 578999999999999999999999998766554    344444444 3345544      4555566


Q ss_pred             HHHHHhcC
Q 006744          350 LVCCAEMG  357 (632)
Q Consensus       350 l~~~~~~~  357 (632)
                      .+.|.+.+
T Consensus       279 ~dl~s~d~  286 (1134)
T 3spa_A          279 RDVYAKDG  286 (1134)
T ss_dssp             HHHHCCCS
T ss_pred             HHHHccCC
Confidence            67776655

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.76  E-value=4.5e-17  Score=158.65  Aligned_cols=220  Identities=10%  Similarity=0.091  Sum_probs=57.4

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHH
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHE  259 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  259 (632)
                      ..|++++|.+.++++      ++..+|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence            446677777777776      23347777777777777777777777542      456677777777777777777777


Q ss_pred             HHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006744          260 LFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL  339 (632)
Q Consensus       260 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  339 (632)
                      .++..++.  .++..+.+.|+.+|.+.|+++++.++++       .|+..+|+.+...|...|++++|..+|..+     
T Consensus        83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----  148 (449)
T 1b89_A           83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----  148 (449)
T ss_dssp             ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred             HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence            66655553  3345667777777777777777776664       245567777777777777777777777755     


Q ss_pred             CCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHH
Q 006744          340 APDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILM  419 (632)
Q Consensus       340 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li  419 (632)
                          ..|..++.++.+.|++++|.+.+.++      .+..++..++.+|...|+++.|......+.    ..+.-...++
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----~~ad~l~~lv  214 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----VHADELEELI  214 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT----TCHHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH----hCHhhHHHHH
Confidence                36666777777777776666666655      123334444444444444444433322211    0222223344


Q ss_pred             HHHHhcCChhhHHHHHHHHh
Q 006744          420 GALLEIGEVKKALYLFGKMR  439 (632)
Q Consensus       420 ~~~~~~g~~~~A~~~~~~m~  439 (632)
                      ..|.+.|++++|..+++...
T Consensus       215 ~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          215 NYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHh
Confidence            44444444444444444444

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=1.8e-16  Score=155.04  Aligned_cols=277  Identities=9%  Similarity=-0.038  Sum_probs=158.1

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744          241 YVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR  320 (632)
Q Consensus       241 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  320 (632)
                      +..+...+...|++++|..+|+++.+.... +..++..+..++...|++++|...|+++.+.... +..++..+...|..
T Consensus        24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~  101 (327)
T 3cv0_A           24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence            344444555555555555555555544322 4445555555555555555555555555554322 44555555566666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHH-HH-HhhhcccHHHHH
Q 006744          321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFF-EF-LVGKEERIMMAL  398 (632)
Q Consensus       321 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a~  398 (632)
                      .|++++|.+.++++.+.... +...+..+...+                      ++......+ .. ++...|++++|.
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~  158 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR  158 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence            66666666666655543211 111111111000                      000000011 11 245566777777


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006744          399 DVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ  478 (632)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  478 (632)
                      +.++++.+..+.+..++..+...|...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  236 (327)
T 3cv0_A          159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-  236 (327)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence            77777666655566777777777777777777777777776643 3345667777777777777777777777777643 


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----------ChHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744          479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----------PTEFKYALTILHVCRSGEAEKIIEVLNEM  544 (632)
Q Consensus       479 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----------p~~~~~~~l~~~~~~~g~~~~a~~~~~~m  544 (632)
                      ..+...+..+...|...|++++|.+.+++++...+..          .+...|..+...+...|++++|..++++.
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            2346667777777777777777777777766542210          03556777777777778887777777644

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.75  E-value=2.5e-18  Score=180.40  Aligned_cols=153  Identities=16%  Similarity=0.179  Sum_probs=126.6

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH---cCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006744          235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKE---NGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIY  311 (632)
Q Consensus       235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  311 (632)
                      .--..|||++|++||+.|++++|.++|++|.+   .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||.+||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            34467999999999999999999999988764   589999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc------ccHHHHH
Q 006744          312 NSIIGGLCRVKQ-FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA------ADLEKFF  384 (632)
Q Consensus       312 ~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l  384 (632)
                      |+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+    +++.++++ .-++.+.      ......+
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL  278 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHH
Confidence            999999999998 4789999999999999999999999987655432    33333333 2233332      3344556


Q ss_pred             HHHhhhcc
Q 006744          385 EFLVGKEE  392 (632)
Q Consensus       385 ~~~~~~~g  392 (632)
                      ...|.+.+
T Consensus       279 ~dl~s~d~  286 (1134)
T 3spa_A          279 RDVYAKDG  286 (1134)
T ss_dssp             HHHHCCCS
T ss_pred             HHHHccCC
Confidence            66676554

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.9e-15  Score=156.07  Aligned_cols=368  Identities=8%  Similarity=-0.069  Sum_probs=245.4

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc-----
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKD-----L---VEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN-----  267 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----  267 (632)
                      .....||.|...+...|++++|++.|++..+.     +   -.....+|+.+..+|...|++++|...+++..+.     
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34567999999999999999999999876542     1   1224578999999999999999999999887652     


Q ss_pred             C-Cc-ccHHhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCHHHHHHHHHHHHhCCCC
Q 006744          268 G-IL-IDRAIYGVLIEGLVGE--GKVGKACDLLKDLVDSGYRADLGIYNSIIGG---LCRVKQFDKAYKLFEVTVQDDLA  340 (632)
Q Consensus       268 ~-~~-p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~  340 (632)
                      + .. -...++..+..++.+.  +++++|++.|++..+..+. +...+..+..+   +...++.++|++.+++..+.+..
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence            1 11 1345666666666554  4689999999999887543 45555555444   44567888899999888765422


Q ss_pred             CCHhcHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHH
Q 006744          341 PDFSTVNPLLVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYN  416 (632)
Q Consensus       341 p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  416 (632)
                       +...+..+...+..    .+++++|.+.+++....... ....+..+...|...|++++|...+++..+..+.+..++.
T Consensus       208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  285 (472)
T 4g1t_A          208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC  285 (472)
T ss_dssp             -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence             44455555444444    45778899999988776543 4556777888899999999999999999988877888888


Q ss_pred             HHHHHHHhc-------------------CChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 006744          417 ILMGALLEI-------------------GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS  477 (632)
Q Consensus       417 ~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~  477 (632)
                      .+..+|...                   +.+++|...+++..... +.+..++..+...+...|++++|.+.|++.++..
T Consensus       286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~  364 (472)
T 4g1t_A          286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKE  364 (472)
T ss_dssp             HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            887776432                   23566777777776643 3445567788888999999999999999988765


Q ss_pred             CCCCH--HhHHHHHH-HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 006744          478 QVPSV--AAYNCLTK-GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEV  554 (632)
Q Consensus       478 ~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  554 (632)
                      ..+..  ..+..+.. .+...|++++|+..|++.++..   |+.....         +....+.++++...+.+ +.+..
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~---~~~~~~~---------~~~~~l~~~~~~~l~~~-p~~~~  431 (472)
T 4g1t_A          365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN---QKSREKE---------KMKDKLQKIAKMRLSKN-GADSE  431 (472)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC---CCCHHHH---------HHHHHHHHHHHHHHHHC-C-CTT
T ss_pred             CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHH---------HHHHHHHHHHHHHHHhC-CCCHH
Confidence            43321  12233332 2346788999999998887643   3322221         12234455566655553 66788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      +|..|..+|...|++++|.+.|++.++.+..
T Consensus       432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~  462 (472)
T 4g1t_A          432 ALHVLAFLQELNEKMQQADEDSERGLESGSL  462 (472)
T ss_dssp             HHHHHHHHHHHHHHCC---------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999987654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=2.3e-16  Score=154.31  Aligned_cols=268  Identities=11%  Similarity=-0.030  Sum_probs=186.5

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +...|..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|.+.++++.+.... +..++..+..
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~   97 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAV   97 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHH
Confidence            44557778888899999999999999988764 447788888899999999999999999999887543 6788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH--------------HH-HHHccCCHHHHHHHHHHHHhCCCCCCHhcH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSI--------------IG-GLCRVKQFDKAYKLFEVTVQDDLAPDFSTV  346 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~  346 (632)
                      .|...|++++|.+.++++.+.... +...+..+              .. .+...|++++|..+++++.+.... +...+
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  175 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLH  175 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHH
Confidence            999999999999999999876433 33333333              11 255556666666666666554322 34445


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006744          347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG  426 (632)
Q Consensus       347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  426 (632)
                      ..+...+...|++++|...++++.                                   +..+.+..+|..+...+...|
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~-----------------------------------~~~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAV-----------------------------------ELRPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH-----------------------------------HHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHH-----------------------------------HhCCCcHHHHHHHHHHHHHcC
Confidence            555555555555555555555444                                   433345666777777777777


Q ss_pred             ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----------CHHhHHHHHHHHHhc
Q 006744          427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-----------SVAAYNCLTKGLCKI  495 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~  495 (632)
                      ++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.....           +...+..+..++.+.
T Consensus       221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (327)
T 3cv0_A          221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM  299 (327)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence            7777777777776643 3345667777777777778888877777777643221           466777788888888


Q ss_pred             CCHHHHHHHHHHHh
Q 006744          496 GEIDAAMMLVRDCL  509 (632)
Q Consensus       496 g~~~~A~~~~~~~~  509 (632)
                      |++++|..++++.+
T Consensus       300 g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          300 NRPDLVELTYAQNV  313 (327)
T ss_dssp             TCHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHHHH
Confidence            88888888876544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=1e-15  Score=146.27  Aligned_cols=223  Identities=10%  Similarity=0.035  Sum_probs=115.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcc
Q 006744          243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRV  321 (632)
Q Consensus       243 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~  321 (632)
                      .+..+|...|++++|+..++.    .-.|+..++..+...+...|+.++|++.++++...+..| +...+..+...+.+.
T Consensus        39 ~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~  114 (291)
T 3mkr_A           39 FLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD  114 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC
Confidence            334444444554444443322    122334444444444444455555555555544443222 223333334444555


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc-ccHHHHHHHHhhhcccHHHHHHH
Q 006744          322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA-ADLEKFFEFLVGKEERIMMALDV  400 (632)
Q Consensus       322 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~  400 (632)
                      |++++|++.+++      ..+...+..+...+.+.|++++|.+.++++.+...... ..+....+..+...|++++|..+
T Consensus       115 g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~  188 (291)
T 3mkr_A          115 QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYI  188 (291)
T ss_dssp             TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHH
T ss_pred             CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHH
Confidence            555555554443      12333444444445555555555555555444321100 00011122223344667777777


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 006744          401 FEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILE-ACECHNKIIEM  476 (632)
Q Consensus       401 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~-a~~~~~~~~~~  476 (632)
                      |+++.+..+.+...|+.+..++.+.|++++|...|++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus       189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            777666655577777777777777777777777777776643 3355566667777777777654 45677776664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.74  E-value=6.1e-15  Score=152.34  Aligned_cols=374  Identities=12%  Similarity=-0.025  Sum_probs=254.0

Q ss_pred             CCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCC-CcCHHhHHHHHHHHHhcCChhHHHHHHH
Q 006744          149 KHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLC-KPDVFAYTAMIRVLAAERNLDACLRVWE  227 (632)
Q Consensus       149 ~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~  227 (632)
                      ......||.|...+...|++++|++.|+.         |++++........ .....+|+.+...|...|++++|...|+
T Consensus        48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~k---------Al~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~  118 (472)
T 4g1t_A           48 EFKATMCNLLAYLKHLKGQNEAALECLRK---------AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD  118 (472)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHH---------HHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHH---------HHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            44567899999999999999999988654         5556555433222 2356789999999999999999999998


Q ss_pred             HHHhC-----C-CC-cCHHhHHHHHHHHHh--cCChhHHHHHHHHHHHcCCcccHHhHHHHHHH---HHhcCCHHHHHHH
Q 006744          228 EMKKD-----L-VE-ADVMAYVTLIMGLCK--GGRVVRGHELFREMKENGILIDRAIYGVLIEG---LVGEGKVGKACDL  295 (632)
Q Consensus       228 ~m~~~-----~-~~-p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~---~~~~g~~~~a~~~  295 (632)
                      +..+.     + .. ....++..+..++..  .+++++|++.|++..+.... +...+..+..+   +...++.++|++.
T Consensus       119 ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~  197 (472)
T 4g1t_A          119 KVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDP  197 (472)
T ss_dssp             HHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred             HHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHH
Confidence            87642     1 11 234566665555554  45799999999999887543 55555555544   4456788899999


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          296 LKDLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK  371 (632)
Q Consensus       296 ~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  371 (632)
                      +++..+.... +..++..+...+..    .|++++|.+++++...... .+...+..+...|...|++++|...+.+..+
T Consensus       198 ~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  275 (472)
T 4g1t_A          198 LRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALE  275 (472)
T ss_dssp             HHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            9998876543 55666666555543    4678899999998887543 3566788899999999999999999999988


Q ss_pred             CCCCccccHHHHHHHHhhh-------------------cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744          372 LKFSVAADLEKFFEFLVGK-------------------EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL  432 (632)
Q Consensus       372 ~~~~~~~~~~~~l~~~~~~-------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  432 (632)
                      .... +...+..+..+|..                   .+..+.|...|++..+..+.+..++..+...|...|++++|+
T Consensus       276 ~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~  354 (472)
T 4g1t_A          276 YIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE  354 (472)
T ss_dssp             HSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred             hCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence            7544 33344444444322                   244678888999988887778888999999999999999999


Q ss_pred             HHHHHHhhCCCCcCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          433 YLFGKMRGLNLEVNSL--SFSIAIQ-CHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       433 ~~~~~m~~~~~~p~~~--t~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      ..|++.......+...  .+..+.. .....|+.++|...|.+.++..  |+.....         +..+.+.++++..+
T Consensus       355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l  423 (472)
T 4g1t_A          355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRL  423 (472)
T ss_dssp             HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHH
Confidence            9999998865333321  2222222 3456899999999999998854  4432222         22344555666665


Q ss_pred             hcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          510 GNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       510 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                      ...+  .+..+|..+...|...|++++|++.|++..+.|
T Consensus       424 ~~~p--~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          424 SKNG--ADSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHCC---CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            5432  345678889999999999999999999999875

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=2.1e-13  Score=148.06  Aligned_cols=386  Identities=13%  Similarity=0.092  Sum_probs=271.0

Q ss_pred             ChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCC--CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHH
Q 006744          167 LFRAADQVPELMDSQGRIAEMLEILEKMRRNLC--KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTL  244 (632)
Q Consensus       167 ~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  244 (632)
                      +.++.-...+.+...|.+.+|+++++++.-.+-  .-+...-+.++....+. +..+..+..+++...    +   ..-+
T Consensus       984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred             CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence            333333334444456777777777777763311  12334455566555555 445555555554421    1   2336


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006744          245 IMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQF  324 (632)
Q Consensus       245 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~  324 (632)
                      ...+...|.+++|..+|++...     .....+.++.   ..|++++|.++.++..      +..+|..+..++.+.|++
T Consensus      1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A         1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred             HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCH
Confidence            6777788889999998887521     2222233332   6778888888888652      577888999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744          325 DKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL  404 (632)
Q Consensus       325 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  404 (632)
                      ++|++.|.+.      -|...|..++.+|.+.|+++++.+++....+...  +..+...++.+|++.+++++......  
T Consensus      1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI~-- 1191 (1630)
T 1xi4_A         1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-- 1191 (1630)
T ss_pred             HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHHh--
Confidence            9999999664      3667888899999999999999999988777652  33344458888999998886444431  


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHh
Q 006744          405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAA  484 (632)
Q Consensus       405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  484 (632)
                          ..+...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+.+++.      .+..+
T Consensus      1192 ----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~a 1252 (1630)
T 1xi4_A         1192 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRT 1252 (1630)
T ss_pred             ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHH
Confidence                124556777999999999999999999885         47899999999999999999999877      35678


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMC  564 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~  564 (632)
                      |..+..+|...|+++.|......+.      .+...+..++..|.+.|.+++|+.+++...... +-....|+-|..+|+
T Consensus      1253 Wkev~~acve~~Ef~LA~~cgl~Ii------v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A         1253 WKEVCFACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhh------cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence            9989999999999999988765432      234456678889999999999999998888664 445557777777776


Q ss_pred             hc--CCHHHHHHHHHHHHHCCCCCC-----CChhhHHHHHHHHhhhchhHHHHhhh
Q 006744          565 KH--GTLEEARKVFTNLRERKLLTE-----ANTIVYDEILIEHMKKKTADLVLSGL  613 (632)
Q Consensus       565 ~~--g~~~~A~~~~~~m~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~v~~~l  613 (632)
                      +.  ++..++.++|.   +++-.|.     .....|..+..-|.+.++.+.+...|
T Consensus      1326 Ky~peklmEhlk~f~---~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1326 KFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             hCCHHHHHHHHHHHH---HhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            54  55556666554   3333322     34556778888888888877666333

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=1.8e-15  Score=144.52  Aligned_cols=253  Identities=11%  Similarity=0.042  Sum_probs=142.3

Q ss_pred             HHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH
Q 006744          246 MGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD  325 (632)
Q Consensus       246 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~  325 (632)
                      +-....|++..|+..++................+..+|...|+++.|+..++..    -.|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence            344556777888777766544322211234455667788888888777766441    2346667777777777778888


Q ss_pred             HHHHHHHHHHhCCCCCCHh-cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744          326 KAYKLFEVTVQDDLAPDFS-TVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEEL  404 (632)
Q Consensus       326 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  404 (632)
                      +|++.++++...+..|+.. .+..+...+...|++++|.+.+++      +.                            
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~----------------------------  128 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GD----------------------------  128 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CC----------------------------
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CC----------------------------
Confidence            8888888777665545433 344444666667777776666655      12                            


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006744          405 KGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSF---SIAIQCHVESGDILEACECHNKIIEMSQVPS  481 (632)
Q Consensus       405 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~  481 (632)
                            +...+..++..|.+.|++++|.+.|+++.+..  |+...+   ...+..+...|++++|..+|+++.+.. +.+
T Consensus       129 ------~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~  199 (291)
T 3mkr_A          129 ------SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPT  199 (291)
T ss_dssp             ------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCC
T ss_pred             ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCc
Confidence                  44455555555555555555555555555432  332211   111122223355666666666665542 234


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhC
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK-IIEVLNEMTQE  547 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~  547 (632)
                      ...++.+..++.+.|++++|...|++++...+.  +..++..++..+...|+.++ +.++++++.+.
T Consensus       200 ~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          200 LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            555555666666666666666666665544322  23334445555555555543 44555555554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=7.2e-14  Score=131.19  Aligned_cols=224  Identities=13%  Similarity=0.025  Sum_probs=129.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HhhHH
Q 006744          239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA--D----LGIYN  312 (632)
Q Consensus       239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~--~----~~~~~  312 (632)
                      ..|..+...+...|++++|.+.|+++.+..  .+..++..+..+|...|++++|.+.+++..+.....  +    ..+|.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            344444555555555555555555555444  344455555555555555555555555544321110  1    23444


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcc
Q 006744          313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE  392 (632)
Q Consensus       313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  392 (632)
                      .+...|.+                                   .|++++|...++++.+....         ...+.+.|
T Consensus        84 ~l~~~~~~-----------------------------------~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~  119 (258)
T 3uq3_A           84 RIGNAYHK-----------------------------------LGDLKKTIEYYQKSLTEHRT---------ADILTKLR  119 (258)
T ss_dssp             HHHHHHHH-----------------------------------TTCHHHHHHHHHHHHHHCCC---------HHHHHHHH
T ss_pred             HHHHHHHH-----------------------------------cccHHHHHHHHHHHHhcCch---------hHHHHHHh
Confidence            44444444                                   44444444444444442211         12344556


Q ss_pred             cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          393 RIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNK  472 (632)
Q Consensus       393 ~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~  472 (632)
                      ++++|...++.+....+.+...|..+...+...|++++|...|+++.... +.+...+..+...+...|++++|...+++
T Consensus       120 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  198 (258)
T 3uq3_A          120 NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNK  198 (258)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            66677777776666654466677777888888888888888888777643 33556666777777777777777777777


Q ss_pred             HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744          473 IIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       473 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  510 (632)
                      +++.. ..+...+..+..+|...|++++|...++++++
T Consensus       199 al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          199 AIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            76643 22456666677777777777777777766553

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.63  E-value=1e-13  Score=141.37  Aligned_cols=346  Identities=12%  Similarity=-0.013  Sum_probs=153.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc
Q 006744          210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRV---VRGHELFREMKENGILIDRAIYGVLIEGLVGE  286 (632)
Q Consensus       210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  286 (632)
                      ...+.+.|++++|+++|++..+.|   +...+..+...|...|+.   ++|.++|++..+.    +...+..|...+...
T Consensus        10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A           10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence            334445555555555555554443   222233333333444444   5555555555432    333344444433333


Q ss_pred             C-----CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH---HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744          287 G-----KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD---KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       287 g-----~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  358 (632)
                      |     +.++|+..|++..+.|..   ..+..|...|...+..+   ++.+.+......|.   ......+...|...+.
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred             CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence            3     445555555555554422   13444444444433322   23333333333222   2234444445555554


Q ss_pred             hhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcc---cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc----CChhhH
Q 006744          359 MDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEE---RIMMALDVFEELKGKGYSSVPIYNILMGALLEI----GEVKKA  431 (632)
Q Consensus       359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A  431 (632)
                      ++++......+.+.-...++.....+..+|.+.|   +.++|.+.|++..+.+..+...+..+...|...    +++++|
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A  236 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA  236 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            4433333222222211122234445555555555   666666666666666555555445555555443    466666


Q ss_pred             HHHHHHHhhCCCCcCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-----CHHHHHH
Q 006744          432 LYLFGKMRGLNLEVNSLSFSIAIQC-H--VESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIG-----EIDAAMM  503 (632)
Q Consensus       432 ~~~~~~m~~~~~~p~~~t~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~  503 (632)
                      +..|++.. .|   +...+..+... +  ...++.++|.++|++..+.|   +...+..|...|. .|     ++++|++
T Consensus       237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            66666655 22   22333333333 2  34566666666666666544   4445555555554 33     6666666


Q ss_pred             HHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006744          504 LVRDCLGNVASGPTEFKYALTILHVCR----SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK----HGTLEEARKV  575 (632)
Q Consensus       504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~  575 (632)
                      .|++..     .-+...+..|...|..    ..+.++|+.+|++..+.|.   ......|...|..    ..+.++|..+
T Consensus       309 ~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~  380 (452)
T 3e4b_A          309 HFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF  380 (452)
T ss_dssp             HHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred             HHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence            666544     1223333334444443    2366666666666666552   2234444444442    3466666666


Q ss_pred             HHHHHHCCC
Q 006744          576 FTNLRERKL  584 (632)
Q Consensus       576 ~~~m~~~~~  584 (632)
                      |+...+.|.
T Consensus       381 ~~~A~~~g~  389 (452)
T 3e4b_A          381 SQLAKAQDT  389 (452)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHHCCC
Confidence            666666653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.3e-13  Score=129.35  Aligned_cols=226  Identities=11%  Similarity=0.013  Sum_probs=165.3

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcc--c----HHh
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILI--D----RAI  275 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~----~~~  275 (632)
                      ....|..+...+...|++++|++.|++..+..  .+..+|..+..++...|++++|.+.+++..+.....  +    ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            45678899999999999999999999999876  788899999999999999999999999988753221  1    578


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh
Q 006744          276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE  355 (632)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  355 (632)
                      +..+...|...|++++|...|+++.+..  |+.       ..+.+.|++++|...++++...... +...+..+...+..
T Consensus        82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~  151 (258)
T 3uq3_A           82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFT  151 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHH
Confidence            9999999999999999999999999853  342       4456667788888888887764311 23345555555666


Q ss_pred             cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 006744          356 MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF  435 (632)
Q Consensus       356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  435 (632)
                      .|++++|...++++.+.                                   .+.+..+|..+..+|...|++++|...|
T Consensus       152 ~~~~~~A~~~~~~a~~~-----------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~  196 (258)
T 3uq3_A          152 KSDWPNAVKAYTEMIKR-----------------------------------APEDARGYSNRAAALAKLMSFPEAIADC  196 (258)
T ss_dssp             TTCHHHHHHHHHHHHHH-----------------------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHhc-----------------------------------CcccHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            66666666665555543                                   3335556666666666677777777777


Q ss_pred             HHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       436 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      ++..+.. +.+...+..+..++...|++++|...+++..+
T Consensus       197 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          197 NKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            6666543 33455666666666777777777777666655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.60  E-value=7e-14  Score=127.39  Aligned_cols=198  Identities=20%  Similarity=0.043  Sum_probs=100.1

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      ++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+.... +...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Confidence            344556666666666666666666666666543 334556666666666666666666666666665433 455566666


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHH
Q 006744          281 EGLVGE-----------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPL  349 (632)
Q Consensus       281 ~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  349 (632)
                      .++.+.           |++++|+..|++..+..+. +...|..+...|...|++++|+..|++..+..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            666655           5555555555555544332 34445555555555555555555555554443  234444444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh
Q 006744          350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK  429 (632)
Q Consensus       350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  429 (632)
                      ..++...|++++|...++                                   +..+..+.+...+..+...+...|+++
T Consensus       158 a~~~~~~g~~~~A~~~~~-----------------------------------~al~~~P~~~~~~~~la~~~~~~g~~~  202 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYA-----------------------------------KALEQAPKDLDLRVRYASALLLKGKAE  202 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHH-----------------------------------HHHHHSTTCHHHHHHHHHHHTC-----
T ss_pred             HHHHHHcCCHHHHHHHHH-----------------------------------HHHHhCCCChHHHHHHHHHHHHccCHH
Confidence            444444444444444444                                   444433345555666666666666666


Q ss_pred             hHHHHHHHH
Q 006744          430 KALYLFGKM  438 (632)
Q Consensus       430 ~A~~~~~~m  438 (632)
                      +|...|++.
T Consensus       203 ~A~~~~~~~  211 (217)
T 2pl2_A          203 EAARAAALE  211 (217)
T ss_dssp             ---------
T ss_pred             HHHHHHHHH
Confidence            666666544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.60  E-value=1.2e-13  Score=140.96  Aligned_cols=373  Identities=10%  Similarity=-0.015  Sum_probs=237.5

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh---hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC----
Q 006744          180 SQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL---DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG----  252 (632)
Q Consensus       180 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----  252 (632)
                      +.|++++|+.+|++..+.|   +..++..|...|...|+.   ++|.++|++..+.    +...+..+...+...+    
T Consensus        15 ~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~   87 (452)
T 3e4b_A           15 KRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATE   87 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred             hCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCC
Confidence            3455666666666665544   334455566667777887   8999999988753    5566777777555555    


Q ss_pred             -ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744          253 -RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK---ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY  328 (632)
Q Consensus       253 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  328 (632)
                       +.++|.+.|++..+.|..   ..+..|...|...+..++   +.+.+......|   +...+..|...|...+.++++.
T Consensus        88 ~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           88 AEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred             cCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence             778999999999887643   367777777777665443   444555554444   3456677888888888665555


Q ss_pred             HHHHHHHhCCCCCCHhcHHHHHHHHHhcC---ChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhc----ccHHHHHHHH
Q 006744          329 KLFEVTVQDDLAPDFSTVNPLLVCCAEMG---RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKE----ERIMMALDVF  401 (632)
Q Consensus       329 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~  401 (632)
                      .....+.+.-...+...+..+...|...|   +.++|...|++..+.|... ...+..+..+|...    ++.++|.+.|
T Consensus       162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~~~~Lg~~y~~g~~~~~d~~~A~~~~  240 (452)
T 3e4b_A          162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQRVDSVARVLGDATLGTPDEKTAQALL  240 (452)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence            44333332212223347778888888899   8999999999999888542 33234556666544    7999999999


Q ss_pred             HHHHhCCCCChhHHHHHHHH-H--HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 006744          402 EELKGKGYSSVPIYNILMGA-L--LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG-----DILEACECHNKI  473 (632)
Q Consensus       402 ~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~  473 (632)
                      ++.. .+  +...+..+... |  ...+++++|+..|++..+.|   +...+..+...|. .|     +.++|.++|++.
T Consensus       241 ~~aa-~g--~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          241 EKIA-PG--YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             HHHG-GG--STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             HHHc-CC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            9988 33  77778888887 4  46899999999999999877   5666677777776 55     999999999988


Q ss_pred             HHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 006744          474 IEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR----SGEAEKIIEVLNEMT  545 (632)
Q Consensus       474 ~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~  545 (632)
                      . .   -+...+..|...|..    ..++++|...|++..+..  .++  ....|...|..    .++.++|..+|+...
T Consensus       314 a-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~  385 (452)
T 3e4b_A          314 V-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAK  385 (452)
T ss_dssp             T-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHH
T ss_pred             h-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence            7 3   366777778777776    349999999999987642  232  33345666653    358999999999999


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          546 QEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       546 ~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      +.|. ++.......+......++.++|.++.++.++.
T Consensus       386 ~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          386 AQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             TTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            9883 33333323333333445677787777776554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=3e-13  Score=128.22  Aligned_cols=248  Identities=12%  Similarity=0.062  Sum_probs=135.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HhcHHHHHHH
Q 006744          275 IYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD--FSTVNPLLVC  352 (632)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~  352 (632)
                      .+......+...|++++|+..|+++.+.... +...|..+...|...|++++|+..+++..+....++  ...|..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            3444555555666666666666666554332 333555555566666666666666665555221111  1113444444


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744          353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL  432 (632)
Q Consensus       353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  432 (632)
                      +...|++                                   ++|.+.|++..+..+.+..+|..+...|...|++++|.
T Consensus        84 ~~~~~~~-----------------------------------~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~  128 (272)
T 3u4t_A           84 LMKKGQD-----------------------------------SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI  128 (272)
T ss_dssp             HHHTTCH-----------------------------------HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcccH-----------------------------------HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence            4444444                                   44444444444444445566777777777777777777


Q ss_pred             HHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHh
Q 006744          433 YLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE---IDAAMMLVRDCL  509 (632)
Q Consensus       433 ~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~  509 (632)
                      ..|++..+.. +.+...+..+...+...+++++|.+.|+++.+... .+...+..+..++...|+   +++|...+++++
T Consensus       129 ~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          129 QYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             HHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             HHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence            7777776642 23344444444244444577777777777766431 235555666666666666   666766666665


Q ss_pred             hcCCCCCh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006744          510 GNVASGPT------EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIIS  561 (632)
Q Consensus       510 ~~~~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~  561 (632)
                      +.....|+      ...|..+...|...|++++|++.++++.+.. +.+...+..+..
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~  263 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM  263 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence            44322232      1345556666666666666666666666653 344444444433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.60  E-value=1.3e-13  Score=125.53  Aligned_cols=198  Identities=14%  Similarity=0.024  Sum_probs=143.1

Q ss_pred             cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 006744          377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC  456 (632)
Q Consensus       377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~  456 (632)
                      +...+..+...+.+.|++++|...|++..+.++.+...|..+...+.+.|++++|+..|++..+.. +-+...+..+..+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~   82 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA   82 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            334455556666677777777777777777777777888888888888888888888888887753 3345667777777


Q ss_pred             HHHc-----------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 006744          457 HVES-----------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTI  525 (632)
Q Consensus       457 ~~~~-----------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~  525 (632)
                      +...           |++++|...+++.++... -+...+..+..+|...|++++|+..|+++++..   .+...+..+.
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~la  158 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE---DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc---cchHHHHHHH
Confidence            7777           899999999998887542 246778888888999999999999999988764   5566777788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  580 (632)
                      ..+...|++++|+..|+++.+.. +.+...+..+..++...|++++|.+.|++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            88889999999999999988874 5677888888999999999999998887653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=5.8e-13  Score=131.45  Aligned_cols=217  Identities=10%  Similarity=0.072  Sum_probs=148.0

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR-VVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      ..+|+.+...+.+.|++++|++.|++.++.. +-+..+|+.+..++...|+ +++|++.|+++.+.... +...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            4567777778888888899999888888764 3467788888888888886 88899888888887655 7778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh-cCChh
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE-MGRMD  360 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~  360 (632)
                      ++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            888888888888888888887655 7788888888888888888888888888876543 56677777777777 45546


Q ss_pred             HH-----HHHHHHHHHCCCCccccHHHHHHHHhhhcc--cHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006744          361 NF-----FKLLAQMEKLKFSVAADLEKFFEFLVGKEE--RIMMALDVFEELKGKGYSSVPIYNILMGALLEI  425 (632)
Q Consensus       361 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  425 (632)
                      +|     ...+++.++.... +...+..+..++...|  ++++|.+.+.++ +..+.+...+..+..+|.+.
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~  322 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDM  322 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHH
Confidence            65     3555555444322 2223333333333333  344444444444 33333444444444444443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=6.5e-13  Score=125.86  Aligned_cols=236  Identities=12%  Similarity=-0.003  Sum_probs=154.7

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD--LGIYNSII  315 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li  315 (632)
                      ...+......+...|++++|++.|+++.+.... +...+..+..+|...|++++|+..+++..+....++  ...|..+.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG   81 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence            445667788899999999999999999987544 566899999999999999999999999998432222  33488999


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHH
Q 006744          316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIM  395 (632)
Q Consensus       316 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  395 (632)
                      ..|...|++++|+..|++..+.... +...+..+...+...|++++|...+++..+...                     
T Consensus        82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---------------------  139 (272)
T 3u4t_A           82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT---------------------  139 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC---------------------
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC---------------------
Confidence            9999999999999999999875432 445667777777777777777777766655422                     


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCC---HHHHHHHHHH
Q 006744          396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGD---ILEACECHNK  472 (632)
Q Consensus       396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~  472 (632)
                                    .+..+|..+...+...+++++|...|+++.+.. +.+...+..+..++...|+   .++|...+++
T Consensus       140 --------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  204 (272)
T 3u4t_A          140 --------------TDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEK  204 (272)
T ss_dssp             --------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred             --------------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence                          234444444422222235555555555554432 2223344444444444454   4445555555


Q ss_pred             HHHCC-CCCC------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          473 IIEMS-QVPS------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       473 ~~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      +.+.. ..|+      ..+|..+...|...|++++|.+.|+++++.
T Consensus       205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            44321 0111      235556666677777777777777776654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.56  E-value=6.5e-12  Score=119.05  Aligned_cols=222  Identities=11%  Similarity=-0.029  Sum_probs=141.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCcccHHhHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK----GGRVVRGHELFREMKENGILIDRAIYG  277 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~  277 (632)
                      +..++..+...+...|++++|++.|++..+.   -+..++..+...+..    .+++++|.+.|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            5566777777788888888888888887763   345667777777777    888888888888887765   566777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHH
Q 006744          278 VLIEGLVG----EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPL  349 (632)
Q Consensus       278 ~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  349 (632)
                      .+...|..    .++.++|+..|++..+.+   +...+..+...|..    .+++++|+.+|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77777877    888888888888877764   56677777777777    788888888888777654   44455556


Q ss_pred             HHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhh----cccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744          350 LVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVPIYNILMGA  421 (632)
Q Consensus       350 l~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  421 (632)
                      ...|..    .+++++|...+++..+.+   +...+..+..+|..    .+++++|...|++..+.+  +...+..+...
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l~~~  227 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAM  227 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence            666665    666666666666655543   12223333333433    444444444444444433  23334444444


Q ss_pred             HHh----cCChhhHHHHHHHHhh
Q 006744          422 LLE----IGEVKKALYLFGKMRG  440 (632)
Q Consensus       422 ~~~----~g~~~~A~~~~~~m~~  440 (632)
                      |..    .+++++|...|++..+
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHcCCCcccCHHHHHHHHHHHHH
Confidence            444    4444444444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.55  E-value=1.7e-12  Score=121.45  Aligned_cols=132  Identities=11%  Similarity=-0.011  Sum_probs=66.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...|..+...+...|++++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++.+.... +..++..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence            3445555555566666666666666555442 234455555555555555555555555555554322 34445555555


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          283 LVGEGKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      |...|++++|.++|+++.+.+..| +...+..+...|.+.|++++|...|+++.+
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR  169 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            555555555555555554411112 233444444445555555555555544443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.55  E-value=1.7e-12  Score=128.13  Aligned_cols=250  Identities=11%  Similarity=0.007  Sum_probs=200.0

Q ss_pred             HHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHH
Q 006744          152 FASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN-LDACLRVWEEMK  230 (632)
Q Consensus       152 ~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~  230 (632)
                      ...|+.+..++.+.|++++|+..++...+                .. +-+..+|+.+...+...|+ +++|++.|++..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~----------------l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al  159 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIE----------------LN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAII  159 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH----------------HC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHH----------------hC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            45667777777777777666666555443                22 2368889999999999997 999999999999


Q ss_pred             hCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 006744          231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI  310 (632)
Q Consensus       231 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  310 (632)
                      +.. +-+...|..+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++++..+. +...
T Consensus       160 ~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a  236 (382)
T 2h6f_A          160 EEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSV  236 (382)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHH
T ss_pred             HHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH
Confidence            875 447889999999999999999999999999998665 7889999999999999999999999999998765 7889


Q ss_pred             HHHHHHHHHc-cCCHHHH-----HHHHHHHHhCCCCCCHhcHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCccccHHH
Q 006744          311 YNSIIGGLCR-VKQFDKA-----YKLFEVTVQDDLAPDFSTVNPLLVCCAEMG--RMDNFFKLLAQMEKLKFSVAADLEK  382 (632)
Q Consensus       311 ~~~li~~~~~-~g~~~~A-----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~  382 (632)
                      |+.+..++.+ .|..++|     +..|++....... +...|..+...+...|  ++++|.+.+..+ +. .+.+...+.
T Consensus       237 ~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~  313 (382)
T 2h6f_A          237 WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIA  313 (382)
T ss_dssp             HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHH
T ss_pred             HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHH
Confidence            9999999999 6665777     5888888775433 5667888888888887  689999999887 33 233556677


Q ss_pred             HHHHHhhhcc---------cHHHHHHHHHHH-HhCCCCChhHHHHHHHHHHh
Q 006744          383 FFEFLVGKEE---------RIMMALDVFEEL-KGKGYSSVPIYNILMGALLE  424 (632)
Q Consensus       383 ~l~~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~li~~~~~  424 (632)
                      .+..+|.+.|         .+++|.++|+++ .+.++.....|..+...+..
T Consensus       314 ~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          314 FLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence            7888887764         358999999999 77766677778877776654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=3.9e-13  Score=127.57  Aligned_cols=248  Identities=11%  Similarity=-0.076  Sum_probs=140.3

Q ss_pred             CCHHHHHHHHHHHHhCCC---CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744          182 GRIAEMLEILEKMRRNLC---KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH  258 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  258 (632)
                      |++++|+..|+++.+...   +.+..+|..+...+...|++++|++.|++..+.. +.+..+|..+..++...|++++|.
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence            455666666666655421   1235566667777777777777777777766653 335666777777777777777777


Q ss_pred             HHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744          259 ELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       259 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      +.|+++.+.... +..++..+..+|.+.|++++|...|+++.+..  |+.......+..+...|++++|...+++.....
T Consensus        98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  174 (275)
T 1xnf_A           98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  174 (275)
T ss_dssp             HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            777777665332 45666666677777777777777777766643  232333333344455566666666665555432


Q ss_pred             CCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHH
Q 006744          339 LAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNIL  418 (632)
Q Consensus       339 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  418 (632)
                       .++... ..++..+...++.++|...+....+......                               ..+..+|..+
T Consensus       175 -~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~l  221 (275)
T 1xnf_A          175 -DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLA-------------------------------EHLSETNFYL  221 (275)
T ss_dssp             -CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-------------------------------HHHHHHHHHH
T ss_pred             -CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhccccccc-------------------------------ccccHHHHHH
Confidence             112222 2244444444555555555544432211000                               0024567777


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006744          419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH  470 (632)
Q Consensus       419 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~  470 (632)
                      ...|...|++++|...|++.....  |+.  +.....++...|++++|.+.+
T Consensus       222 a~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          222 GKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            788888888888888888877643  422  222244566677777776665

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.54  E-value=1e-10  Score=123.22  Aligned_cols=417  Identities=9%  Similarity=-0.016  Sum_probs=240.8

Q ss_pred             CCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHhCC-CCcCHHh
Q 006744          165 NNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN---LDACLRVWEEMKKDL-VEADVMA  240 (632)
Q Consensus       165 ~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~-~~p~~~~  240 (632)
                      ..+++.-.++++...+.+.++.+..+|+++... .+.....|...+..-.+.|+   ++.+.++|++..... ..|++..
T Consensus        63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L  141 (679)
T 4e6h_A           63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL  141 (679)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred             cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence            356666677777777778888888888888776 34467778888888778887   888888888887653 1377778


Q ss_pred             HHHHHHHHHhcCCh--------hHHHHHHHHHHH-cCC-ccc-HHhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 006744          241 YVTLIMGLCKGGRV--------VRGHELFREMKE-NGI-LID-RAIYGVLIEGLVG---------EGKVGKACDLLKDLV  300 (632)
Q Consensus       241 ~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~  300 (632)
                      |...+.-..+.++.        +...++|+.... .|. .++ ...|...+.....         .++++.+..+|++++
T Consensus       142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL  221 (679)
T 4e6h_A          142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL  221 (679)
T ss_dssp             HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence            87777766665543        233466666544 455 443 4577777665432         334677788888877


Q ss_pred             HCCCCCCHhhHHH---HHHHHHcc----------CCHHHHHHHHHHHHh--CCCC---CCH-------------------
Q 006744          301 DSGYRADLGIYNS---IIGGLCRV----------KQFDKAYKLFEVTVQ--DDLA---PDF-------------------  343 (632)
Q Consensus       301 ~~g~~~~~~~~~~---li~~~~~~----------g~~~~A~~~~~~m~~--~~~~---p~~-------------------  343 (632)
                      ..-...-..+|..   +...+...          .+++.|...+.++..  .++.   |..                   
T Consensus       222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q  301 (679)
T 4e6h_A          222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ  301 (679)
T ss_dssp             TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred             hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence            5311111233332   22221000          012233334433322  1221   110                   


Q ss_pred             -hcHHHHHHHHHhcC-------ChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHH-HHHHHHHhCCCCChhH
Q 006744          344 -STVNPLLVCCAEMG-------RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMAL-DVFEELKGKGYSSVPI  414 (632)
Q Consensus       344 -~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~  414 (632)
                       ..|...+.---..+       ..+.+..+|++.+.... ....++...+..+...|+.++|. ++|++.....+.+...
T Consensus       302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~L  380 (679)
T 4e6h_A          302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVL  380 (679)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHH
Confidence             11222222211111       01223455666555432 24445555555556667777775 7777777665556666


Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCC---------CcC------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNL---------EVN------------SLSFSIAIQCHVESGDILEACECHNKI  473 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~  473 (632)
                      |-..+...-+.|++++|..+|+.+.....         .|+            ...|...+....+.|+.+.|..+|..+
T Consensus       381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A  460 (679)
T 4e6h_A          381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC  460 (679)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777777777777788877777765310         121            224666666666777777788888777


Q ss_pred             HHCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--
Q 006744          474 IEMSQVPSVAAYNCLTKGLCKI-GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCP--  550 (632)
Q Consensus       474 ~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~--  550 (632)
                      .+.........|...+..-.+. ++.+.|.++|+..++..+.  +...|...+......|+.+.|..+|++.......  
T Consensus       461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~  538 (679)
T 4e6h_A          461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH  538 (679)
T ss_dssp             HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT
T ss_pred             HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence            7641111223333333333333 3477788887777765433  2334445556556667777888888777766321  


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          551 PNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       551 p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      -....|..++.--.+.|+.+.+.++.+++.+.-..
T Consensus       539 ~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~  573 (679)
T 4e6h_A          539 LLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE  573 (679)
T ss_dssp             HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            13456777777777778777788888777777543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=2.3e-12  Score=120.54  Aligned_cols=201  Identities=16%  Similarity=0.109  Sum_probs=137.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG  317 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  317 (632)
                      ...|..+...+...|++++|.+.|+++.+.... +..++..+...|...|++++|.+.|+++.+.... +...|..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence            455666667777777777777777777665432 5666777777777777777777777777765433 56667777777


Q ss_pred             HHccCCHHHHHHHHHHHHhCCCCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744          318 LCRVKQFDKAYKLFEVTVQDDLAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM  396 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  396 (632)
                      |...|++++|.++++++.+.+..| +...+..+...+...|++++|...++++.+.... +...+..+..+|...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            777777777777777776632333 3345566667777777777777777777665432 34555666666777777777


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744          397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL  441 (632)
Q Consensus       397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  441 (632)
                      |...++.+.+..+.+...+..+...+...|++++|..+++++.+.
T Consensus       194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            777777777766666667777777777777777777777777664

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.54  E-value=1.2e-11  Score=117.28  Aligned_cols=223  Identities=13%  Similarity=-0.013  Sum_probs=138.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG----EGKVGKACDLLKDLVDSGYRADLGIYN  312 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~  312 (632)
                      +..++..+...+...|++++|.+.|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            45566666777777777777777777776632   44566667777777    777777777777777664   556666


Q ss_pred             HHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHH
Q 006744          313 SIIGGLCR----VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFF  384 (632)
Q Consensus       313 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  384 (632)
                      .+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...+++..+.+           
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----------  144 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-----------  144 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----------
Confidence            67777777    777777777777776654   44555556666655    556666666665555543           


Q ss_pred             HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH-
Q 006744          385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE-  459 (632)
Q Consensus       385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~-  459 (632)
                                                +...+..+...|..    .+++++|...|++..+.+   +...+..+...|.. 
T Consensus       145 --------------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g  195 (273)
T 1ouv_A          145 --------------------------DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHG  195 (273)
T ss_dssp             --------------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             --------------------------cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence                                      33445555555555    566666666666655543   33445555555666 


Q ss_pred             ---cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhc
Q 006744          460 ---SGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       460 ---~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~  511 (632)
                         .+++++|.+.|++..+.+   +...+..+..+|..    .+++++|.+.|++..+.
T Consensus       196 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~  251 (273)
T 1ouv_A          196 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL  251 (273)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence               666666666666666543   24455556666666    66666666666666544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=5.5e-13  Score=126.52  Aligned_cols=247  Identities=11%  Similarity=-0.085  Sum_probs=162.7

Q ss_pred             hcCChhHHHHHHHHHHhCCC---CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744          215 AERNLDACLRVWEEMKKDLV---EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       215 ~~g~~~~A~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  291 (632)
                      ..|++++|++.|+++.+...   +.+..++..+...+...|++++|.+.|+++.+.... +..+|..+...|...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence            45677888888888776531   113566777777778888888888888887776433 56777777777778888888


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK  371 (632)
Q Consensus       292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  371 (632)
                      |.+.|+++.+.... +..+|..+...|.+.|++++|...|+++.+..  |+.......+..+...               
T Consensus        96 A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~---------------  157 (275)
T 1xnf_A           96 AYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQK---------------  157 (275)
T ss_dssp             HHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHh---------------
Confidence            88888777775433 55667777777777777777777777776542  3332222233333333               


Q ss_pred             CCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC---cCHH
Q 006744          372 LKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE---VNSL  448 (632)
Q Consensus       372 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~  448 (632)
                                          |++++|...+++.......+...+. ++..+...++.++|...+.+.......   -+..
T Consensus       158 --------------------~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  216 (275)
T 1xnf_A          158 --------------------LDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSE  216 (275)
T ss_dssp             --------------------HCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHH
T ss_pred             --------------------cCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccH
Confidence                                4455555555444443333333343 566667777788888888887654211   1146


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLV  505 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  505 (632)
                      .+..+...+...|++++|...|+++.+..  |+.  +.....++...|++++|++.+
T Consensus       217 ~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          217 TNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            78888999999999999999999999854  422  233456777889999998876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=3.5e-12  Score=116.79  Aligned_cols=168  Identities=9%  Similarity=-0.079  Sum_probs=111.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +...|..+...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence            45567777777777888888888887776653 335667777777777777777777777777765433 5666777777


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744          282 GLVGE-GKVGKACDLLKDLVDSGYRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM  359 (632)
Q Consensus       282 ~~~~~-g~~~~a~~~~~~m~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  359 (632)
                      .|... |++++|...++++.+.+..| +...|..+...+...|++++|+..++++.+.... +...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            77777 77777777777777622222 2456666777777777777777777776654321 344555555666666666


Q ss_pred             hHHHHHHHHHHHC
Q 006744          360 DNFFKLLAQMEKL  372 (632)
Q Consensus       360 ~~a~~~~~~~~~~  372 (632)
                      ++|...++++.+.
T Consensus       164 ~~A~~~~~~~~~~  176 (225)
T 2vq2_A          164 GDADYYFKKYQSR  176 (225)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            6666665555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=5.4e-13  Score=123.96  Aligned_cols=201  Identities=12%  Similarity=0.083  Sum_probs=125.9

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .....|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHH
Confidence            345567777778888888888888888887754 346777788888888888888888888888776433 667778888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChh
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD  360 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  360 (632)
                      ..|...|++++|.+.++++.+.... +...+..+...+.+.|++++|..+++++.+... .+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHH
Confidence            8888888888888888888776543 566777778888888888888888887776532 24455666666666666666


Q ss_pred             HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744          361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG  440 (632)
Q Consensus       361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  440 (632)
                      +|...++++.+..                                   +.+..+|..+..+|...|++++|...++++.+
T Consensus       177 ~A~~~~~~~~~~~-----------------------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  221 (243)
T 2q7f_A          177 EALSQFAAVTEQD-----------------------------------PGHADAFYNAGVTYAYKENREKALEMLDKAID  221 (243)
T ss_dssp             HHHHHHHHHHHHC-----------------------------------TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-----------------------------------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence            6666666655543                                   22444555556666666666666666666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=4.5e-12  Score=116.02  Aligned_cols=202  Identities=14%  Similarity=0.091  Sum_probs=131.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      +...+..+...+...|++++|.+.|+++.+.... +...+..+...|...|++++|.+.++++.+.... +..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence            4566777777888888888888888887776433 5667777778888888888888888887775433 5667777777


Q ss_pred             HHHcc-CCHHHHHHHHHHHHhCCCCCC-HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccH
Q 006744          317 GLCRV-KQFDKAYKLFEVTVQDDLAPD-FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERI  394 (632)
Q Consensus       317 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  394 (632)
                      .|... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+..                     
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------------------  143 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ---------------------  143 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------
Confidence            78888 888888888877776322232 3445555566666666666666666655433                     


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          395 MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII  474 (632)
Q Consensus       395 ~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  474 (632)
                                    +.+...+..+...+...|++++|..+++++.+.....+...+..+...+...|+.+.+..+++.+.
T Consensus       144 --------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          144 --------------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             --------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --------------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                          234455566666666666666666666666553211344455555555566666666666666665


Q ss_pred             H
Q 006744          475 E  475 (632)
Q Consensus       475 ~  475 (632)
                      +
T Consensus       210 ~  210 (225)
T 2vq2_A          210 A  210 (225)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.51  E-value=4.4e-10  Score=118.39  Aligned_cols=420  Identities=11%  Similarity=0.050  Sum_probs=279.6

Q ss_pred             HHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHh------------------cCC---HHHHHHHHHHH
Q 006744          136 SKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDS------------------QGR---IAEMLEILEKM  194 (632)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~------------------~g~---~~~a~~~~~~m  194 (632)
                      +..|+......  +.|...|..++..+.+.+.++.++.+|+.+..                  .|.   ++.+..+|++.
T Consensus        52 i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa  129 (679)
T 4e6h_A           52 IGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC  129 (679)
T ss_dssp             HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence            33444444433  56888899999888888888888888887662                  356   89999999999


Q ss_pred             HhCC-CCcCHHhHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CcC-HHhHHHHHHHHHh---------cCC
Q 006744          195 RRNL-CKPDVFAYTAMIRVLAAERNL--------DACLRVWEEMKK-DLV-EAD-VMAYVTLIMGLCK---------GGR  253 (632)
Q Consensus       195 ~~~~-~~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~-~~~-~p~-~~~~~~li~~~~~---------~g~  253 (632)
                      .... ..|++..|...+....+.++.        +.+.++|+.... .|. .++ ...|...+.....         .++
T Consensus       130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~  209 (679)
T 4e6h_A          130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR  209 (679)
T ss_dssp             TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred             HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence            8864 247888999998877776654        334578876553 455 453 5678877765542         345


Q ss_pred             hhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC-------------HHHHHHHHHHHHH--CCCC---CC--------
Q 006744          254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-------------VGKACDLLKDLVD--SGYR---AD--------  307 (632)
Q Consensus       254 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------------~~~a~~~~~~m~~--~g~~---~~--------  307 (632)
                      ++.+..+|++........-..+|......-...+.             ++.|...+.++..  .++.   |.        
T Consensus       210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~  289 (679)
T 4e6h_A          210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES  289 (679)
T ss_dssp             HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred             HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence            78889999998863222123344333222111111             2233344444332  1332   11        


Q ss_pred             ------------HhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHH-HHHH
Q 006744          308 ------------LGIYNSIIGGLCRVK-------QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFF-KLLA  367 (632)
Q Consensus       308 ------------~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~  367 (632)
                                  ...|...+.---..+       ..+.+..+|++.+... .-+...|...+..+...|+.+.|. ++++
T Consensus       290 ~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~  368 (679)
T 4e6h_A          290 NLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLK  368 (679)
T ss_dssp             TSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             cCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence                        134555554433332       1234567788877653 336667777778888889999996 9999


Q ss_pred             HHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC----------CC------------ChhHHHHHHHHHHhc
Q 006744          368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG----------YS------------SVPIYNILMGALLEI  425 (632)
Q Consensus       368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------~~------------~~~~~~~li~~~~~~  425 (632)
                      +..... +.+..++...+....+.|+++.|.++|+++.+..          .+            ...+|...+....+.
T Consensus       369 rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~  447 (679)
T 4e6h_A          369 LGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRI  447 (679)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHc
Confidence            998743 3355556667777888999999999999987631          11            234688888888889


Q ss_pred             CChhhHHHHHHHHhhC-CCCcCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 006744          426 GEVKKALYLFGKMRGL-NLEVNSLSFSIAIQCHVES-GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMM  503 (632)
Q Consensus       426 g~~~~A~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  503 (632)
                      |+.+.|..+|.+..+. + ......|...+..-.+. ++.+.|..+|+..++. ..-+...+...++.....|+.+.|..
T Consensus       448 ~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~  525 (679)
T 4e6h_A          448 QGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKS  525 (679)
T ss_dssp             HCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHH
Confidence            9999999999999876 2 12233343333222333 4589999999999986 33456677888888889999999999


Q ss_pred             HHHHHhhcCCCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006744          504 LVRDCLGNVASG-PTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGM  563 (632)
Q Consensus       504 ~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~  563 (632)
                      +|+.++...... -....|...+.--...|+.+.+.++.+++.+.  .|+......+++-|
T Consensus       526 lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          526 LFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence            999988654321 23456777777778889999999999999987  34444444555444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=5.3e-13  Score=134.99  Aligned_cols=282  Identities=15%  Similarity=0.060  Sum_probs=183.5

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCC
Q 006744          272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADL----GIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DL-APD  342 (632)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~  342 (632)
                      ....+..+...+...|++++|+..|+++.+.+.. +.    ..|..+...|...|++++|+..+++..+.    +. ...
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3445566777888899999999999998886443 32    46778888888999999999998887643    11 112


Q ss_pred             HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744          343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGAL  422 (632)
Q Consensus       343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  422 (632)
                      ...+..+...|...|++++|...+.++.+.....               ++              ......++..+...|
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---------------~~--------------~~~~~~~~~~l~~~~  176 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL---------------GD--------------RLSEGRALYNLGNVY  176 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---------------TC--------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh---------------hc--------------hHHHHHHHHHHHHHH
Confidence            3455666677777788888777777665421000               00              000233455566666


Q ss_pred             HhcCC-----------------hhhHHHHHHHHhhC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-
Q 006744          423 LEIGE-----------------VKKALYLFGKMRGL----NL-EVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-  479 (632)
Q Consensus       423 ~~~g~-----------------~~~A~~~~~~m~~~----~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-  479 (632)
                      ...|+                 +++|+..+++..+.    +. .....++..+...+...|++++|...+++..+.... 
T Consensus       177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  256 (411)
T 4a1s_A          177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF  256 (411)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence            66666                 66666665554331    11 112235666666777777777777777776653111 


Q ss_pred             CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 006744          480 PS----VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG----PTEFKYALTILHVCRSGEAEKIIEVLNEMTQE----  547 (632)
Q Consensus       480 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----  547 (632)
                      .+    ..++..+...|...|++++|...+++++......    .....+..+...+...|++++|+.++++..+.    
T Consensus       257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  336 (411)
T 4a1s_A          257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL  336 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence            11    2366777888888888888888888776432111    11345667778888888888888888877654    


Q ss_pred             CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          548 GC-PPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       548 g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      +. .....++..+..+|.+.|++++|.+++++..+..
T Consensus       337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            11 1123477788889999999999999999987764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=7.5e-13  Score=133.47  Aligned_cols=303  Identities=13%  Similarity=0.058  Sum_probs=193.1

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC
Q 006744          235 EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILID----RAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYRA  306 (632)
Q Consensus       235 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~  306 (632)
                      ......+......+...|++++|...|+++.+.+.. +    ..++..+...|...|++++|...+++....    +..+
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            345566677778888888888888888888876433 2    356777888888888888888888876542    1111


Q ss_pred             -CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhcHHHHHHHHHhcCC--------------------hh
Q 006744          307 -DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA-PD----FSTVNPLLVCCAEMGR--------------------MD  360 (632)
Q Consensus       307 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~--------------------~~  360 (632)
                       ...++..+...|...|++++|...+++..+.... .+    ..++..+...+...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             2446677777888888888888888776542100 11    2244555555555555                    44


Q ss_pred             HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC-C-ChhHHHHHHHHHHhcCChhhHHHHHHHH
Q 006744          361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY-S-SVPIYNILMGALLEIGEVKKALYLFGKM  438 (632)
Q Consensus       361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m  438 (632)
                      +|...+.+..+                            ++..   .+. + ...++..+...|...|++++|...+++.
T Consensus       165 ~A~~~~~~al~----------------------------~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  213 (406)
T 3sf4_A          165 AAVDFYEENLS----------------------------LVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR  213 (406)
T ss_dssp             HHHHHHHHHHH----------------------------HHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH----------------------------HHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            44444433322                            1111   110 0 2446777778888888888888888776


Q ss_pred             hhCCC-CcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          439 RGLNL-EVN----SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PS----VAAYNCLTKGLCKIGEIDAAMMLVRDC  508 (632)
Q Consensus       439 ~~~~~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~  508 (632)
                      .+... .++    ..++..+...+...|++++|...+++..+.... .+    ..++..+...|...|++++|...++++
T Consensus       214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            54310 011    236677777888888888888888877643111 11    456777888888888888888888887


Q ss_pred             hhcCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 006744          509 LGNVASGPT----EFKYALTILHVCRSGEAEKIIEVLNEMTQE----GC-PPNEVICSAIISGMCKHGTL  569 (632)
Q Consensus       509 ~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~~g~~  569 (632)
                      +.......+    ...+..+...+...|++++|++.+++..+.    +. .....++..+...+...|+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            643221111    345667778888888888888888876643    21 11234566677777766655

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=8.6e-13  Score=133.43  Aligned_cols=280  Identities=14%  Similarity=0.071  Sum_probs=191.7

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccH----HhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDR----AIYGVLIEGLVGEGKVGKACDLLKDLVDS----GY-RAD  307 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~  307 (632)
                      ....+..+...+...|++++|.+.|+++.+.+.. +.    .++..+...|...|++++|...|++..+.    +. ...
T Consensus        47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  125 (411)
T 4a1s_A           47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE  125 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence            3445666778889999999999999999987543 33    57888999999999999999999998753    11 123


Q ss_pred             HhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCCHhcHHHHHHHHHhcCC-----------------hhHHHHH
Q 006744          308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DL-APDFSTVNPLLVCCAEMGR-----------------MDNFFKL  365 (632)
Q Consensus       308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~  365 (632)
                      ..++..+...|...|++++|...+++..+.    +- .....++..+...|...|+                 +++|...
T Consensus       126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence            467888899999999999999999987653    11 1123355566667777777                 5555555


Q ss_pred             HHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC
Q 006744          366 LAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLE  444 (632)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  444 (632)
                      +.+..+                            ++...  .... ...++..+...|...|++++|...+++..+....
T Consensus       206 ~~~al~----------------------------~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          206 YQENLK----------------------------LMRDL--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHH----------------------------HHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH----------------------------HHHHc--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            444322                            11111  0001 2346777777788888888888887776543100


Q ss_pred             -cC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-----CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744          445 -VN----SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-----PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS  514 (632)
Q Consensus       445 -p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  514 (632)
                       .+    ...+..+...|...|++++|...+++..+....     ....++..+...|...|++++|...+++++.....
T Consensus       256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  335 (411)
T 4a1s_A          256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE  335 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             11    225667777788888888888888777653211     11456777888888888888888888887643211


Q ss_pred             CC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          515 GP----TEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       515 ~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      ..    ....+..+...|...|++++|.+++++..+.
T Consensus       336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            11    1335666788888889999999888887765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.50  E-value=1.3e-12  Score=121.28  Aligned_cols=212  Identities=14%  Similarity=0.058  Sum_probs=132.2

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      ...+|..+...+...|++++|...|+++.+.... +...+..+...|...|++++|.+.|+++.+.... +..++..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence            3455666666677777777777777777665333 5666667777777777777777777777665432 5566666666


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744          317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM  396 (632)
Q Consensus       317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  396 (632)
                      .|...|++++|.++++++.+... .+...+..+...+...                                   |++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~-----------------------------------~~~~~  143 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKL-----------------------------------EQPKL  143 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHT-----------------------------------SCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh-----------------------------------ccHHH
Confidence            77777777777777766665432 1333444444444444                                   55555


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744          397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM  476 (632)
Q Consensus       397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  476 (632)
                      |...++++.+..+.+...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.
T Consensus       144 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            5555555544444467789999999999999999999999998764 456778899999999999999999999999986


Q ss_pred             CCCCCHHhHHHH
Q 006744          477 SQVPSVAAYNCL  488 (632)
Q Consensus       477 ~~~p~~~~~~~l  488 (632)
                      .. -+...+..+
T Consensus       223 ~p-~~~~~~~~~  233 (243)
T 2q7f_A          223 QP-DHMLALHAK  233 (243)
T ss_dssp             CT-TCHHHHHHH
T ss_pred             Cc-chHHHHHHH
Confidence            42 234444443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.49  E-value=1.2e-12  Score=132.08  Aligned_cols=303  Identities=14%  Similarity=0.009  Sum_probs=207.4

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCcc
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKEN----GILI  271 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p  271 (632)
                      ......+......+...|++++|...|++..+.+ +.+    ...|..+...+...|++++|...+++..+.    +-.+
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            4566778888899999999999999999998864 223    357888999999999999999999987653    2222


Q ss_pred             -cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHccCC--------------------HH
Q 006744          272 -DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR-AD----LGIYNSIIGGLCRVKQ--------------------FD  325 (632)
Q Consensus       272 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~----~~~~~~li~~~~~~g~--------------------~~  325 (632)
                       ...++..+...|...|++++|...+++..+.... .+    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence             3567888999999999999999999988753110 11    4478888899999999                    99


Q ss_pred             HHHHHHHHHHhC----CCCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHH
Q 006744          326 KAYKLFEVTVQD----DLAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV  400 (632)
Q Consensus       326 ~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  400 (632)
                      +|...+++..+.    +..+ ...++..+...+...|++++|...+++..+...                          
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~--------------------------  218 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK--------------------------  218 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH--------------------------
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--------------------------
Confidence            999888876542    1111 122445555666666666666666655543210                          


Q ss_pred             HHHHHhCCCC--ChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744          401 FEELKGKGYS--SVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDILEACECHNKI  473 (632)
Q Consensus       401 ~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~  473 (632)
                           ..+..  ...+|..+...|...|++++|...+++....    +..+ ...++..+...+...|++++|...+++.
T Consensus       219 -----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  293 (406)
T 3sf4_A          219 -----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH  293 (406)
T ss_dssp             -----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence                 00000  1336777888888888888888888877542    1111 1456777778888889999998888887


Q ss_pred             HHCCCC-CC----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCC-hHHHHHHHHHHHHHcCCH
Q 006744          474 IEMSQV-PS----VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGP-TEFKYALTILHVCRSGEA  534 (632)
Q Consensus       474 ~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~  534 (632)
                      .+.... .+    ..++..+...|...|++++|...+++.++..   +..+ ...++..+...+...|+.
T Consensus       294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            753111 11    5567788888999999999999998876431   1111 123344455555555543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.47  E-value=1.8e-12  Score=126.75  Aligned_cols=96  Identities=20%  Similarity=0.187  Sum_probs=57.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhh
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILID----RAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYR-ADLGI  310 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~  310 (632)
                      .+......+...|++++|...|+++.+.... +    ...+..+...|...|++++|.+.+++..+.    +.. ....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            3444556666777777777777777665322 2    345666667777777777777777665432    111 12345


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          311 YNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       311 ~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      +..+...|...|++++|...+++..+
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~  111 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLD  111 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            55566666666666666666665543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.46  E-value=1.4e-12  Score=127.46  Aligned_cols=281  Identities=13%  Similarity=0.073  Sum_probs=176.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CH
Q 006744          273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD----LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DLAP-DF  343 (632)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~  343 (632)
                      ...+......+...|++++|...|+++.+.... +    ...+..+...|...|++++|...+++..+.    +..+ ..
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   83 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   83 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence            334555667788889999999999888876433 3    356777888888888999998888876542    1111 13


Q ss_pred             hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 006744          344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALL  423 (632)
Q Consensus       344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~  423 (632)
                      ..+..+...+...|++++|...+.+..+.........                             ....++..+...|.
T Consensus        84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----------------------------~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-----------------------------GEARALYNLGNVYH  134 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-----------------------------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCch-----------------------------HHHHHHHHHHHHHH
Confidence            3455666677777777777777766544211100000                             01224555555555


Q ss_pred             hcCC--------------------hhhHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 006744          424 EIGE--------------------VKKALYLFGKMRGL----NLE-VNSLSFSIAIQCHVESGDILEACECHNKIIEMSQ  478 (632)
Q Consensus       424 ~~g~--------------------~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~  478 (632)
                      ..|+                    +++|...+++....    +.. .....+..+...+...|++++|...+++..+...
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            5555                    55665555554321    111 1123455666667777777777777776664211


Q ss_pred             C-C----CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Q 006744          479 V-P----SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT----EFKYALTILHVCRSGEAEKIIEVLNEMTQE--  547 (632)
Q Consensus       479 ~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--  547 (632)
                      . .    ...++..+...+...|++++|...+++.+.......+    ...+..+...+...|++++|...++++.+.  
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            0 1    1336677777788888888888888876643211111    345666777788888888888888877653  


Q ss_pred             --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          548 --GC-PPNEVICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       548 --g~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                        +. .....++..+..+|.+.|++++|.+++++..+..
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence              11 1114467788889999999999999999987753

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.44  E-value=1.1e-11  Score=123.79  Aligned_cols=239  Identities=11%  Similarity=0.045  Sum_probs=151.6

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHh
Q 006744          314 IIGGLCRVKQFDKAYKLFEVTVQDDL-APD----FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLV  388 (632)
Q Consensus       314 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  388 (632)
                      ....+...|++++|+..|++..+.-. .++    ..++..+...|...|++++|...+.+..+.....            
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~------------  176 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH------------  176 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC------------
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC------------
Confidence            44556677777777777777664310 111    2355666667777777777777666654321000            


Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDI  463 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~  463 (632)
                         ++.             ......+++.+...|...|++++|...|++..+.    +-.+ ...++..+...|...|++
T Consensus       177 ---~~~-------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~  240 (383)
T 3ulq_A          177 ---EAY-------------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQY  240 (383)
T ss_dssp             ---STT-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ---ccc-------------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCH
Confidence               000             0002345777777777788888888777776543    1011 123667777788888888


Q ss_pred             HHHHHHHHHHHHC----CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CC-hHHHHHHHHHHHHHcCC--
Q 006744          464 LEACECHNKIIEM----SQ-VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS--GP-TEFKYALTILHVCRSGE--  533 (632)
Q Consensus       464 ~~a~~~~~~~~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~p-~~~~~~~l~~~~~~~g~--  533 (632)
                      ++|...+++..+.    +. .....++..+...|.+.|++++|...+++.++....  .+ ....+..+...+...|+  
T Consensus       241 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  320 (383)
T 3ulq_A          241 EDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE  320 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred             HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence            8888888877762    22 223566778888888888888888888887643211  11 12234556666777788  


Q ss_pred             -HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          534 -AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       534 -~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                       +++|+.++++...  .+.....+..+...|...|++++|.+++++..+.
T Consensus       321 ~~~~al~~~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          321 AIQGFFDFLESKML--YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             7777777776521  1223446778889999999999999999988664

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.43  E-value=9.5e-11  Score=113.05  Aligned_cols=183  Identities=8%  Similarity=0.013  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-h-cHHHHHHHHHhcCChhHHHHHH
Q 006744          290 GKACDLLKDLVD-SGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF-S-TVNPLLVCCAEMGRMDNFFKLL  366 (632)
Q Consensus       290 ~~a~~~~~~m~~-~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~  366 (632)
                      ++|..+|++..+ .... +...|..++..+.+.|++++|..+|++..+.  .|+. . .|..+...+.+.|++++|..+|
T Consensus        81 ~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~  157 (308)
T 2ond_A           81 DEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence            445555555444 1211 3334444555555555555555555554442  2221 1 3444444444444444444444


Q ss_pred             HHHHHCCCCccccHHHHHHHH-hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CC
Q 006744          367 AQMEKLKFSVAADLEKFFEFL-VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN-LE  444 (632)
Q Consensus       367 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~  444 (632)
                      ++..+.... ...++.....+ +...|+.++|..+|++..+..+.+...|..++..+.+.|++++|..+|++..... +.
T Consensus       158 ~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~  236 (308)
T 2ond_A          158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence            444443221 11111111111 1123555666666665555444456666666666666677777777776666642 23


Q ss_pred             c--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 006744          445 V--NSLSFSIAIQCHVESGDILEACECHNKIIEM  476 (632)
Q Consensus       445 p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~  476 (632)
                      |  ....|..++....+.|+.+.|..+++++.+.
T Consensus       237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3  2344555555555566666666666665553

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.42  E-value=3.2e-11  Score=120.57  Aligned_cols=234  Identities=11%  Similarity=0.002  Sum_probs=137.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHc----CCcc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHhhHH
Q 006744          244 LIMGLCKGGRVVRGHELFREMKEN----GILI-DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG--Y----RADLGIYN  312 (632)
Q Consensus       244 li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~----~~~~~~~~  312 (632)
                      ....+...|++++|.+.|++..+.    +-.+ ...++..+...|...|++++|...+++..+.-  .    .....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            455667778888888888887663    1111 34567777888888888888888887776531  1    01134667


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----HhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHH
Q 006744          313 SIIGGLCRVKQFDKAYKLFEVTVQDDLA-PD----FSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL  387 (632)
Q Consensus       313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  387 (632)
                      .+...|...|++++|+..|++..+.... .+    ..++..+..+|...|++++|...+++..+..              
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~--------------  254 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF--------------  254 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------------
Confidence            7777788888888888877776542100 11    1245555666666666666666666554410              


Q ss_pred             hhhcccHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC----CCcCHHHHHHHHHHHHHcCC
Q 006744          388 VGKEERIMMALDVFEELKGKG-YSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN----LEVNSLSFSIAIQCHVESGD  462 (632)
Q Consensus       388 ~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~  462 (632)
                                    +..  .. +....++..+...|.+.|++++|...+++..+..    -+.....+..+...+...|+
T Consensus       255 --------------~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~  318 (383)
T 3ulq_A          255 --------------EES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD  318 (383)
T ss_dssp             --------------HHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred             --------------Hhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence                          000  11 1134456666666666666666666666654321    11112234455556666666


Q ss_pred             ---HHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744          463 ---ILEACECHNKIIEMSQVPS-VAAYNCLTKGLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       463 ---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~  510 (632)
                         +++|..++++.   +..++ ...+..+...|...|++++|...|+++++
T Consensus       319 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          319 EEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               55555555544   22222 34566677777777777777777777653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=2.4e-10  Score=110.21  Aligned_cols=219  Identities=11%  Similarity=0.035  Sum_probs=112.0

Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-------cCCH-------HHHHHHHHHHHhCCCCC-CHhcHHHHHHHHH
Q 006744          290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCR-------VKQF-------DKAYKLFEVTVQDDLAP-DFSTVNPLLVCCA  354 (632)
Q Consensus       290 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~  354 (632)
                      ++|..+|++.....+. +...|..++..+..       .|++       ++|..+|++..+. +.| +...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence            5667777777765333 56667666666543       4664       7777777777652 123 3345666666666


Q ss_pred             hcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh-HHHHHHHHHHhcCChhhHHH
Q 006744          355 EMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP-IYNILMGALLEIGEVKKALY  433 (632)
Q Consensus       355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~  433 (632)
                      ..|++++|..+|+++.+...                                   .+.. +|..++..+.+.|++++|..
T Consensus       111 ~~~~~~~A~~~~~~al~~~p-----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~  155 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIED-----------------------------------IDPTLVYIQYMKFARRAEGIKSGRM  155 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSSS-----------------------------------SCTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             hcCCHHHHHHHHHHHHhccc-----------------------------------cCccHHHHHHHHHHHHhcCHHHHHH
Confidence            66777777666666665432                                   2222 44444444445555555555


Q ss_pred             HHHHHhhCCCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 006744          434 LFGKMRGLNLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV  512 (632)
Q Consensus       434 ~~~~m~~~~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  512 (632)
                      +|++..+.. +.+...|........ ..|+.++|..+|++.++... -+...|..++..+.+.|++++|..+|++++...
T Consensus       156 ~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~  233 (308)
T 2ond_A          156 IFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence            555544432 122222222211111 13555555555555554321 134455555555555555555555555555432


Q ss_pred             CCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          513 ASGP--TEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       513 ~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      ...|  ....|..++......|+.+.|..+++++.+.
T Consensus       234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2222  2334444455555555555555555555543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.39  E-value=4.9e-11  Score=105.35  Aligned_cols=165  Identities=13%  Similarity=0.018  Sum_probs=82.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHH
Q 006744          273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC  352 (632)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~  352 (632)
                      ..+|..+...|.+.|++++|++.|++..+..+. +..+|..+...|.+.|++++|...+......... +...+..+...
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~   82 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA   82 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence            344555555555555555555555555544332 4445555555555555555555555554443221 23333334444


Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHH
Q 006744          353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKAL  432 (632)
Q Consensus       353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  432 (632)
                      +...++++.+...+.+..+.... +......+..+|.+.|++++|++.|++..+.++.+..+|..+..+|.+.|++++|+
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~  161 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV  161 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence            44445555554444444433221 22233333444444455555555555554444445566666666666666666666


Q ss_pred             HHHHHHhh
Q 006744          433 YLFGKMRG  440 (632)
Q Consensus       433 ~~~~~m~~  440 (632)
                      ..|++..+
T Consensus       162 ~~~~~al~  169 (184)
T 3vtx_A          162 KYFKKALE  169 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666655

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.38  E-value=3.8e-12  Score=123.08  Aligned_cols=246  Identities=9%  Similarity=-0.028  Sum_probs=160.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------C
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKD-------LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN------G  268 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~  268 (632)
                      +..++..+...+...|++++|..+|+++.+.       .......++..+...+...|++++|.+.+++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4667888889999999999999999988763       22334567888889999999999999999988764      2


Q ss_pred             -CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC---
Q 006744          269 -ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS------GY-RADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD---  337 (632)
Q Consensus       269 -~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---  337 (632)
                       ......++..+...|...|++++|...|+++.+.      +. .....++..+...|...|++++|+.+|+++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence             2224567888899999999999999999988764      21 123456788888999999999999999888754   


Q ss_pred             ---CCCC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCC-------CccccHHHHHHHHhhhcccHHHHHHHHHHHHh
Q 006744          338 ---DLAP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF-------SVAADLEKFFEFLVGKEERIMMALDVFEELKG  406 (632)
Q Consensus       338 ---~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  406 (632)
                         +..| ...++..+...+...|++++|...++++.+...       .+.......                       
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-----------------------  242 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-----------------------  242 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence               1122 234567777888888999999888888765311       000000000                       


Q ss_pred             CCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          407 KGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       407 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                          ....+..+...+...+.+.+|...+....... +.+..++..+..+|...|++++|.++|++.++
T Consensus       243 ----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          243 ----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                12223334444455566666666666555432 33445566666677777777777777776654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.37  E-value=1.1e-10  Score=102.95  Aligned_cols=168  Identities=13%  Similarity=0.063  Sum_probs=137.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++...|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            56778888999999999999999999888764 446778888888999999999999999888876544 6777788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      .+...++++.|...+++....... +...+..+...|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            888899999999999888876554 6778888888899999999999999888876432 56677888888888888888


Q ss_pred             HHHHHHHHHHCC
Q 006744          362 FFKLLAQMEKLK  373 (632)
Q Consensus       362 a~~~~~~~~~~~  373 (632)
                      |.+.|++..+..
T Consensus       160 A~~~~~~al~~~  171 (184)
T 3vtx_A          160 AVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC
Confidence            888888877653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.37  E-value=1.9e-11  Score=125.32  Aligned_cols=184  Identities=13%  Similarity=-0.009  Sum_probs=104.6

Q ss_pred             CHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744          183 RIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNL-DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF  261 (632)
Q Consensus       183 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  261 (632)
                      .+++++..+++..... +.+...|..+...+...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4566666666555432 23566666666666666676 67777766666543 234566666666666666666666666


Q ss_pred             HHHHHcCCcccHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc--------CCH
Q 006744          262 REMKENGILIDRAIYGVLIEGLVGE---------GKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV--------KQF  324 (632)
Q Consensus       262 ~~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~--------g~~  324 (632)
                      ++..+..  |+...+..+...|...         |++++|++.|++..+.... +...|..+..+|...        |++
T Consensus       161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchH
Confidence            6666543  3455666666666666         6666666666666655433 455566666666555        556


Q ss_pred             HHHHHHHHHHHhCCCC--CCHhcHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          325 DKAYKLFEVTVQDDLA--PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEK  371 (632)
Q Consensus       325 ~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  371 (632)
                      ++|+..|++..+....  -+...|..+..+|...|++++|.+.|++..+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  286 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA  286 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666665555543210  1334444444444444444444444444443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.36  E-value=2.7e-11  Score=124.29  Aligned_cols=199  Identities=9%  Similarity=-0.086  Sum_probs=156.9

Q ss_pred             cccHHHHHHHHhhhcccH-HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006744          377 AADLEKFFEFLVGKEERI-MMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ  455 (632)
Q Consensus       377 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  455 (632)
                      ....+..+..+|...|++ ++|++.|++..+..+.+..+|..+..+|...|++++|...|++..+.  .|+...+..+..
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~  178 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM  178 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence            444555555666667777 77777777777666667888999999999999999999999998875  477778888888


Q ss_pred             HHHHc---------CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc--------CCHHHHHHHHHHHhhcCCC-CCh
Q 006744          456 CHVES---------GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKI--------GEIDAAMMLVRDCLGNVAS-GPT  517 (632)
Q Consensus       456 ~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~~-~p~  517 (632)
                      .+...         |++++|.+.|+++++... -+...|..+..+|...        |++++|++.|+++++..+. .-+
T Consensus       179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  257 (474)
T 4abn_A          179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN  257 (474)
T ss_dssp             HHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred             HHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence            88888         999999999999888642 3577888888888888        8899999999998865220 025


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          518 EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       518 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      ...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.+.++
T Consensus       258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          258 PDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            6677888899999999999999999988874 556778888889999999998888765443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=4.6e-11  Score=115.35  Aligned_cols=239  Identities=13%  Similarity=0.058  Sum_probs=168.2

Q ss_pred             HhcHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhC------C-
Q 006744          343 FSTVNPLLVCCAEMGRMDNFFKLLAQMEKL-------KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK------G-  408 (632)
Q Consensus       343 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-  408 (632)
                      ..++..+...+...|++++|..+++++.+.       ........+..+..+|...|++++|...+++....      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456778888999999999999999998774       23334556777888889999999999999987654      1 


Q ss_pred             CC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhC------CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----
Q 006744          409 YS-SVPIYNILMGALLEIGEVKKALYLFGKMRGL------NLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEM----  476 (632)
Q Consensus       409 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----  476 (632)
                      .+ ...++..+...|...|++++|...++++.+.      +..| ....+..+...+...|++++|.++++++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            12 5678889999999999999999999988764      2222 3456777888899999999999999998874    


Q ss_pred             --CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCCh-------HHHHHHHHHHHHHcCCHHHHHHH
Q 006744          477 --SQVP-SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNV------ASGPT-------EFKYALTILHVCRSGEAEKIIEV  540 (632)
Q Consensus       477 --~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-------~~~~~~l~~~~~~~g~~~~a~~~  540 (632)
                        +..| ...++..+..+|...|++++|.+.++++++..      ...+.       ...+..+...+...+.+.++...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              2122 25567888899999999999999999987531      00111       11112222233344566666667


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          541 LNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      ++...... +.+..++..+..+|.+.|++++|.++|++..+.
T Consensus       267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            76666542 445678899999999999999999999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.34  E-value=2.3e-10  Score=114.03  Aligned_cols=315  Identities=12%  Similarity=0.015  Sum_probs=179.2

Q ss_pred             cCHHhHHHHHHHH--HhcCChhHHHHHHHHHHHc--CC--cccHHhHHHHHHH--HHhcCCHHHHH---------HHHHH
Q 006744          236 ADVMAYVTLIMGL--CKGGRVVRGHELFREMKEN--GI--LIDRAIYGVLIEG--LVGEGKVGKAC---------DLLKD  298 (632)
Q Consensus       236 p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~--~~--~p~~~~~~~li~~--~~~~g~~~~a~---------~~~~~  298 (632)
                      |+...-+.+-.-|  ...+++++|.++++++.+.  .+  ..+...|-.|+..  ..-.+..+.+.         +.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            4444444444444  6778888888888877552  11  1223333444332  11112222222         44444


Q ss_pred             HHHCCCCCCH----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HhcHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          299 LVDSGYRADL----GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APD----FSTVNPLLVCCAEMGRMDNFFKLLAQM  369 (632)
Q Consensus       299 m~~~g~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~  369 (632)
                      +.......+.    ..|......+...|++++|+..|++..+... .++    ..++..+...|...|+++.|...+.+.
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            4321100010    0122233444566666666666666654310 111    223444555555566666655555554


Q ss_pred             HHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-
Q 006744          370 EKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLE-  444 (632)
Q Consensus       370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-  444 (632)
                      .+.....               ++             .......+++.+...|...|++++|...|++..+.    +-. 
T Consensus       168 l~~~~~~---------------~~-------------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  219 (378)
T 3q15_A          168 LDIYQNH---------------PL-------------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDR  219 (378)
T ss_dssp             HHHHHTS---------------TT-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhC---------------CC-------------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3321000               00             00002446777888888888888888888776552    111 


Q ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CC
Q 006744          445 VNSLSFSIAIQCHVESGDILEACECHNKIIE-----MSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS---GP  516 (632)
Q Consensus       445 p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~p  516 (632)
                      ....++..+..+|...|++++|.+.+++..+     ... ....++..+...|.+.|++++|...+++.++....   ..
T Consensus       220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  298 (378)
T 3q15_A          220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF  298 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            1234567777788888898888888888876     322 23667788888899999999999999988764332   22


Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          517 TEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       517 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      ....+..+...+...++   +.+|+.++++..  ..+.....+..+...|...|++++|.+.|++..+
T Consensus       299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            23345555555666677   777777777621  1122334667888899999999999999988765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=1e-09  Score=109.13  Aligned_cols=276  Identities=12%  Similarity=-0.005  Sum_probs=150.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCCH----hcH
Q 006744          276 YGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLG----IYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APDF----STV  346 (632)
Q Consensus       276 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~----~~~  346 (632)
                      ...+...+...|++++|...+++........+..    +++.+...+...|++++|...+++...... ..+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3344455667778888888877776653222221    445556667777777777777776654211 0111    123


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC---C-ChhHHHHHHHHH
Q 006744          347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGY---S-SVPIYNILMGAL  422 (632)
Q Consensus       347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~-~~~~~~~li~~~  422 (632)
                      ..+...+...|++++|...+++..+...                               ..+.   + ....+..+...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~~~la~~~  145 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLIN-------------------------------EQHLEQLPMHEFLVRIRAQLL  145 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCTTSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhccccCcHHHHHHHHHHHHH
Confidence            3444555566666666666655443210                               0010   1 223455566666


Q ss_pred             HhcCChhhHHHHHHHHhhCCCC--c--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHH----HHHHHH
Q 006744          423 LEIGEVKKALYLFGKMRGLNLE--V--NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS--VAAYN----CLTKGL  492 (632)
Q Consensus       423 ~~~g~~~~A~~~~~~m~~~~~~--p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~----~li~~~  492 (632)
                      ...|++++|...+++.....-.  +  ...++..+...+...|++++|...+++..+....++  .....    ..+..+
T Consensus       146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  225 (373)
T 1hz4_A          146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW  225 (373)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence            6667777777766665442111  1  123455566666677777777777776654311111  11111    222335


Q ss_pred             HhcCCHHHHHHHHHHHhhcCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHh
Q 006744          493 CKIGEIDAAMMLVRDCLGNVASGP--TEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPNE-VICSAIISGMCK  565 (632)
Q Consensus       493 ~~~g~~~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~  565 (632)
                      ...|++++|...+++........+  ....+..+...+...|++++|...+++....    |..++. .++..+..++..
T Consensus       226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~  305 (373)
T 1hz4_A          226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ  305 (373)
T ss_dssp             HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence            677777777777777654321111  1223455666677777777777777766432    222222 255566677777


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 006744          566 HGTLEEARKVFTNLRER  582 (632)
Q Consensus       566 ~g~~~~A~~~~~~m~~~  582 (632)
                      .|+.++|...+++..+.
T Consensus       306 ~g~~~~A~~~l~~al~~  322 (373)
T 1hz4_A          306 AGRKSDAQRVLLDALKL  322 (373)
T ss_dssp             HTCHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHH
Confidence            88888888777776543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.31  E-value=4.3e-10  Score=111.99  Aligned_cols=312  Identities=9%  Similarity=-0.029  Sum_probs=175.0

Q ss_pred             cCHHhHHHHHHHH--HhcCChhHHHHHHHHHHhCC--CCcC--HHhHHHHHHH--HHhcCChhHHH---------HHHHH
Q 006744          201 PDVFAYTAMIRVL--AAERNLDACLRVWEEMKKDL--VEAD--VMAYVTLIMG--LCKGGRVVRGH---------ELFRE  263 (632)
Q Consensus       201 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~--~~p~--~~~~~~li~~--~~~~g~~~~a~---------~~~~~  263 (632)
                      |+..+-+.|-..|  .+.+++++|.++++++.+..  ++.|  ...|-.++..  ....+.+..+.         +.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            3444444444444  67778888888887765421  2222  2233333322  11112333333         55555


Q ss_pred             HHHcCCccc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006744          264 MKENGILID----RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR-A----DLGIYNSIIGGLCRVKQFDKAYKLFEVT  334 (632)
Q Consensus       264 m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m  334 (632)
                      +.......+    ...+......+...|++++|...|++..+.... +    ...++..+...|...|++++|...+++.
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            543211111    112334455667889999999999888754111 1    2446777888889999999999888877


Q ss_pred             HhCC----C-CC-CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744          335 VQDD----L-AP-DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKG  408 (632)
Q Consensus       335 ~~~~----~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  408 (632)
                      .+..    . .+ ...++..+..+|...|++++|...+.+..+....               .++..             
T Consensus       168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~---------------~~~~~-------------  219 (378)
T 3q15_A          168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMD---------------IQNDR-------------  219 (378)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---------------TTCHH-------------
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---------------cCCHH-------------
Confidence            6421    1 11 1345666777788888888888877766542100               00000             


Q ss_pred             CCChhHHHHHHHHHHhcCChhhHHHHHHHHhh-----CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---C
Q 006744          409 YSSVPIYNILMGALLEIGEVKKALYLFGKMRG-----LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV---P  480 (632)
Q Consensus       409 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---p  480 (632)
                       ....+++.+..+|...|++++|...|++...     .. +....++..+...+.+.|++++|...+++..+....   +
T Consensus       220 -~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  297 (378)
T 3q15_A          220 -FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK  297 (378)
T ss_dssp             -HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred             -HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence             0233466666666667777777666666654     22 222455666666777777777777777766653211   1


Q ss_pred             -CHHhHHHHHHHHHhcCC---HHHHHHHHHHHhhcCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          481 -SVAAYNCLTKGLCKIGE---IDAAMMLVRDCLGNVASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       481 -~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                       ....+..+...|...|+   +++|+..+++.    ...++ ...+..+...|...|++++|.+.|++..+
T Consensus       298 ~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          298 FYKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             CHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             13334555555556666   66676666652    11222 23445567777777777777777777654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.29  E-value=2.4e-09  Score=106.38  Aligned_cols=275  Identities=13%  Similarity=0.018  Sum_probs=152.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCcCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCc-ccHHhHH
Q 006744          207 TAMIRVLAAERNLDACLRVWEEMKKDLVEADV----MAYVTLIMGLCKGGRVVRGHELFREMKEN----GIL-IDRAIYG  277 (632)
Q Consensus       207 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~  277 (632)
                      ......+...|++++|...+++.....-..+.    .+++.+...+...|++++|.+.+++..+.    |.. ....++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33444566788888888888887665311222    24556667777788888888888876652    111 0123356


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC----CHhcH
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDS----GYR--A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP----DFSTV  346 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~  346 (632)
                      .+...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++........    ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            6677788888888888888777643    111  1 23455667777788888888888888776532211    12345


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCcccc-HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 006744          347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAAD-LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI  425 (632)
Q Consensus       347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~  425 (632)
                      ..+...+...|++++|...+++........... .....                             .....+..+...
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~  228 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN-----------------------------ANKVRVIYWQMT  228 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH-----------------------------HHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH-----------------------------HHHHHHHHHHHC
Confidence            555566667777777777776654431111100 00000                             001122334455


Q ss_pred             CChhhHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCH-HhHHHHHHHHHhcCC
Q 006744          426 GEVKKALYLFGKMRGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIEM----SQVPSV-AAYNCLTKGLCKIGE  497 (632)
Q Consensus       426 g~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~~-~~~~~li~~~~~~g~  497 (632)
                      |++++|...+++.......+   ....+..+...+...|++++|...++...+.    +..++. ..+..+..++...|+
T Consensus       229 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  308 (373)
T 1hz4_A          229 GDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR  308 (373)
T ss_dssp             TCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC
Confidence            55555555555554332111   1123444555566666666666666555432    111121 244555666667777


Q ss_pred             HHHHHHHHHHHhh
Q 006744          498 IDAAMMLVRDCLG  510 (632)
Q Consensus       498 ~~~A~~~~~~~~~  510 (632)
                      .++|...+++.+.
T Consensus       309 ~~~A~~~l~~al~  321 (373)
T 1hz4_A          309 KSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777777776654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.26  E-value=8.9e-11  Score=111.50  Aligned_cols=165  Identities=12%  Similarity=-0.007  Sum_probs=124.4

Q ss_pred             HhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-C
Q 006744          163 SRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD------LV-E  235 (632)
Q Consensus       163 ~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~  235 (632)
                      ...|++++|+.+++         +|+++++++.....+....++..+...|...|++++|++.|++..+.      +- +
T Consensus        12 ~~~~~~~~A~~~~~---------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   82 (283)
T 3edt_B           12 SGLVPRGSAVPLCK---------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP   82 (283)
T ss_dssp             -CCSCSSSHHHHHH---------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred             CCCCCHHHHHHHHH---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch
Confidence            45677888877754         46667777765443445778899999999999999999999988754      21 2


Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc------C-CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------
Q 006744          236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKEN------G-ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS------  302 (632)
Q Consensus       236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------  302 (632)
                      ....++..+..++...|++++|.+.|++..+.      . ......++..+...|...|++++|...|++..+.      
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            24567888999999999999999999988764      1 1224667888888999999999999999888764      


Q ss_pred             CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          303 GYRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       303 g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      +..| ...++..+...|...|++++|..++++..+
T Consensus       163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1112 345777888888888888888888887765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=1.1e-09  Score=96.45  Aligned_cols=168  Identities=14%  Similarity=0.033  Sum_probs=135.1

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 006744          412 VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKG  491 (632)
Q Consensus       412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~  491 (632)
                      ...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. ..+...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            3457777888888888888888888887653 3466777888888888888988888888888754 2356778888888


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006744          492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE  571 (632)
Q Consensus       492 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~  571 (632)
                      +...|++++|.+.+++++....  .+...+..+...+...|++++|+++++++.+.. +.+..++..+..++...|++++
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~  162 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANP--INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE  162 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCc--HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence            8899999999999998876532  345667778888889999999999999988774 5677889999999999999999


Q ss_pred             HHHHHHHHHHCCC
Q 006744          572 ARKVFTNLRERKL  584 (632)
Q Consensus       572 A~~~~~~m~~~~~  584 (632)
                      |.++++++.+...
T Consensus       163 A~~~~~~~~~~~~  175 (186)
T 3as5_A          163 ALPHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999877653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=8.1e-10  Score=97.27  Aligned_cols=166  Identities=17%  Similarity=0.155  Sum_probs=129.3

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...|..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.... +..++..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3456677778888889999988888877653 346777888888888888999999888888876433 67778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHH
Q 006744          283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNF  362 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  362 (632)
                      +...|++++|.+.++++.+.... +...+..+...+...|++++|..+++++.+.. ..+...+..+...+...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            88888888888888888876443 66778888888888888888888888887654 22456777777888888888888


Q ss_pred             HHHHHHHHHC
Q 006744          363 FKLLAQMEKL  372 (632)
Q Consensus       363 ~~~~~~~~~~  372 (632)
                      ...++++.+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            8888777654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.21  E-value=5.9e-10  Score=118.93  Aligned_cols=166  Identities=8%  Similarity=0.024  Sum_probs=145.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +..+|+.|...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            46789999999999999999999999988764 345788999999999999999999999999987554 6889999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      +|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.... +...+..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            999999999999999999987654 6789999999999999999999999998876432 56778889999999999999


Q ss_pred             HHHHHHHHHH
Q 006744          362 FFKLLAQMEK  371 (632)
Q Consensus       362 a~~~~~~~~~  371 (632)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.20  E-value=3e-10  Score=107.84  Aligned_cols=228  Identities=11%  Similarity=0.032  Sum_probs=149.4

Q ss_pred             HhcCChhHHHHHHHHHHHC-------CCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhC------C-CC-ChhHHHHH
Q 006744          354 AEMGRMDNFFKLLAQMEKL-------KFSVAADLEKFFEFLVGKEERIMMALDVFEELKGK------G-YS-SVPIYNIL  418 (632)
Q Consensus       354 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~-~~~~~~~l  418 (632)
                      ...|++++|..++++..+.       ..+.....+..+..+|...|++++|...++++.+.      + .+ ...+|..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3567788888877776552       22334556677778888899999999999887654      1 12 56678888


Q ss_pred             HHHHHhcCChhhHHHHHHHHhhC------C-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHh
Q 006744          419 MGALLEIGEVKKALYLFGKMRGL------N-LEVNSLSFSIAIQCHVESGDILEACECHNKIIEM------SQVP-SVAA  484 (632)
Q Consensus       419 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~  484 (632)
                      ...|...|++++|...|++....      . .+....++..+...+...|++++|..+++++.+.      ...| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            89999999999999999888764      1 1233556777888888899999999999888864      1122 3566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcC------CCCCh-HHHHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCC
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNV------ASGPT-EFKYALTILHVCRSGE------AEKIIEVLNEMTQEGCPP  551 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~------~~~a~~~~~~m~~~g~~p  551 (632)
                      +..+...|...|++++|..+++++++..      ...+. ...|..+...+...+.      +..+...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            7788888889999999999998877531      11111 1222222222222222      2222222222211 1123


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          552 NEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      ...++..+..+|...|++++|.+++++..+.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3557888999999999999999999988754

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.20  E-value=1.2e-09  Score=100.13  Aligned_cols=196  Identities=10%  Similarity=-0.074  Sum_probs=135.7

Q ss_pred             cccHHHHHHHHhhhcccHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006744          377 AADLEKFFEFLVGKEERIMMALDVFEELKGKGY-SSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQ  455 (632)
Q Consensus       377 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~  455 (632)
                      ++..+......+...|++++|...|++..+..+ .+...+..+..++...|++++|+..|++..+.. +-+...+..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence            345556666777788888888888888887766 566677778888888888888888888887753 234556777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh---HHHHHHHH
Q 006744          456 CHVESGDILEACECHNKIIEMSQVPSV-------AAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT---EFKYALTI  525 (632)
Q Consensus       456 ~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~---~~~~~~l~  525 (632)
                      ++...|++++|...+++.++... .+.       ..|..+...+...|++++|++.|+++++.   .|+   ...|..+.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~l~  160 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---SCHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---CCCcccHHHHHHHH
Confidence            88888888888888888887542 233       45677777788888888888888887754   454   34555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          526 LHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       526 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      ..+...|     ..+++++...+ ..+...|..+.  ....+.+++|...+++..+....
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCC
Confidence            6665433     34455555543 33444444433  33456679999999999987643

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.17  E-value=1e-09  Score=117.19  Aligned_cols=166  Identities=14%  Similarity=0.012  Sum_probs=102.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      +..+|+.+..++.+.|++++|++.|++..+.... +..+|..|..+|.+.|++++|++.|++..+.... +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            3556666666777777777777777766665433 4566666666666677777777766666665433 4556666666


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHH
Q 006744          317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMM  396 (632)
Q Consensus       317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  396 (632)
                      +|.+.|++++|++.|++..+.... +...|..+..++...|++++|...|+                             
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~-----------------------------  135 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYR-----------------------------  135 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH-----------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH-----------------------------
Confidence            666666666666666666554321 33445555555555555555554444                             


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744          397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG  440 (632)
Q Consensus       397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  440 (632)
                            +..+..+.+...|..+..+|...|++++|.+.+++..+
T Consensus       136 ------~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          136 ------TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             ------HHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             ------HHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence                  44444444666777777777777777777777766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.14  E-value=2.1e-08  Score=91.75  Aligned_cols=202  Identities=11%  Similarity=-0.023  Sum_probs=136.2

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .|...|..+...+...|++++|++.|++..+..-.++...+..+..++...|++++|++.|++..+.... +..+|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            3567788888888899999999999998887653267777777888888999999999999998886544 677888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC---HhcHHHHH
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADL-------GIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD---FSTVNPLL  350 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll  350 (632)
                      .+|...|++++|+..|++..+.... +.       ..|..+...+...|++++|+..|++..+.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            8999999999999999988876443 34       45777778888888999999999888764  344   34455555


Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhH
Q 006744          351 VCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPI  414 (632)
Q Consensus       351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  414 (632)
                      .++...|     ..+++.+...+...   ............+.+++|...|++..+..+.+..+
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  216 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLASSN---KEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI  216 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGTTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence            5554433     33334443332211   11111111223344555666665555554444333

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.03  E-value=1.1e-07  Score=89.84  Aligned_cols=228  Identities=13%  Similarity=0.059  Sum_probs=157.0

Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHH----Hhc---CChh
Q 006744          185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER--NLDACLRVWEEMKKDLVEADVMAYVTLIMGL----CKG---GRVV  255 (632)
Q Consensus       185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~  255 (632)
                      ++|+.+++.+...++ -+..+|+.--..+...|  ++++++++++.+...+ +-+..+|+.-...+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            455566666655432 25667888888888888  9999999999988764 34556666555555    445   7889


Q ss_pred             HHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC------HHHH
Q 006744          256 RGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG--KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ------FDKA  327 (632)
Q Consensus       256 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~------~~~A  327 (632)
                      +++++++++.+...+ +..+|+.-.-.+.+.|.++  ++++.++++.+..+. |...|+.....+.+.+.      ++++
T Consensus       128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence            999999999987666 7888888887888888888  999999999988776 88888887777777776      8889


Q ss_pred             HHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCccccHHHHHHHHhhhcccHHHHHHHHHHH
Q 006744          328 YKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN-FFKLLAQMEKLK--FSVAADLEKFFEFLVGKEERIMMALDVFEEL  404 (632)
Q Consensus       328 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  404 (632)
                      ++.++++...... |...|+.+-..+.+.|+... +..+..++.+.+  -..+......+..+|.+.|+.++|.++++.+
T Consensus       206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            9998888876544 77778777777777776333 444555544322  1123344555555555555666666666655


Q ss_pred             Hh-CCCCChhHHHH
Q 006744          405 KG-KGYSSVPIYNI  417 (632)
Q Consensus       405 ~~-~~~~~~~~~~~  417 (632)
                      .+ .++.....|+-
T Consensus       285 ~~~~Dpir~~yW~~  298 (306)
T 3dra_A          285 KSKYNPIRSNFWDY  298 (306)
T ss_dssp             HHTTCGGGHHHHHH
T ss_pred             HhccChHHHHHHHH
Confidence            54 23334444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.03  E-value=1.5e-08  Score=83.60  Aligned_cols=130  Identities=11%  Similarity=0.131  Sum_probs=96.0

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV  284 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  284 (632)
                      .|..+...+...|++++|.++|+++.+.+ +.+...+..+...+...|++++|.++++++.+.+.. +...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            46667777788888888888888877653 345667777777788888888888888887776433 5667777777888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      ..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            888888888888887765433 5666777777788888888888888777653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.03  E-value=1.4e-08  Score=96.76  Aligned_cols=126  Identities=11%  Similarity=-0.043  Sum_probs=61.5

Q ss_pred             HHHhcCChhHHHHHHHHHHHc----CCccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHhhHHHHHH
Q 006744          247 GLCKGGRVVRGHELFREMKEN----GILID-RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR---A--DLGIYNSIIG  316 (632)
Q Consensus       247 ~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~--~~~~~~~li~  316 (632)
                      .|...|++++|.+.|++..+.    |-.++ ..+|+.+..+|.+.|++++|+..|++..+....   +  -..+|+.+..
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556666666666555432    11111 345555666666666666666666555432100   0  0234555556


Q ss_pred             HHHcc-CCHHHHHHHHHHHHhCCCCC-C----HhcHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006744          317 GLCRV-KQFDKAYKLFEVTVQDDLAP-D----FSTVNPLLVCCAEMGRMDNFFKLLAQMEKL  372 (632)
Q Consensus       317 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  372 (632)
                      .|... |++++|+..|++..+..... +    ..++..+...+...|++++|...+++..+.
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  187 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            66664 66666666666554321000 0    123444455555555555555555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.02  E-value=1.6e-08  Score=96.37  Aligned_cols=162  Identities=11%  Similarity=-0.005  Sum_probs=104.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHhC----CCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC----cc-cHHhHHHHH
Q 006744          211 RVLAAERNLDACLRVWEEMKKD----LVEAD-VMAYVTLIMGLCKGGRVVRGHELFREMKENGI----LI-DRAIYGVLI  280 (632)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p-~~~~~~~li  280 (632)
                      ..|...|++++|.+.|++..+.    |-.++ ..+|+.+..+|...|++++|+..|++..+...    .. -..+++.+.
T Consensus        45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  124 (292)
T 1qqe_A           45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG  124 (292)
T ss_dssp             HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3456677777777777665432    21111 45677777777777787777777777655311    10 134677777


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh------cHHH
Q 006744          281 EGLVGE-GKVGKACDLLKDLVDSGYRA-D----LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS------TVNP  348 (632)
Q Consensus       281 ~~~~~~-g~~~~a~~~~~~m~~~g~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~  348 (632)
                      ..|... |++++|+..|++..+..... +    ..+|+.+...|.+.|++++|+..|++..+........      .|..
T Consensus       125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  204 (292)
T 1qqe_A          125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK  204 (292)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence            888885 88888888888776531110 1    3467777888888888888888888887654332221      3455


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHC
Q 006744          349 LLVCCAEMGRMDNFFKLLAQMEKL  372 (632)
Q Consensus       349 ll~~~~~~~~~~~a~~~~~~~~~~  372 (632)
                      +..++...|++++|...+++..+.
T Consensus       205 lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          205 KGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh
Confidence            566677777777777777766543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.02  E-value=4e-07  Score=93.15  Aligned_cols=376  Identities=8%  Similarity=-0.028  Sum_probs=205.3

Q ss_pred             hCC-ChhHHhHHHHHHHh---cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhC-CC-Cc
Q 006744          164 RNN-LFRAADQVPELMDS---QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN-LDACLRVWEEMKKD-LV-EA  236 (632)
Q Consensus       164 ~~~-~~~~a~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-~~-~p  236 (632)
                      +.| +++.|+.+|+.+..   .|+++.+..+|++....  .|++..|...+....+.++ .+....+|+..... |. ..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~P~~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~   83 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWD   83 (493)
T ss_dssp             ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTT
T ss_pred             HcCcchHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcc
Confidence            345 36777777776553   37888888888888774  3688888888887777663 35566777766543 32 23


Q ss_pred             CHHhHHHHHHHHH----hcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006744          237 DVMAYVTLIMGLC----KGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYN  312 (632)
Q Consensus       237 ~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  312 (632)
                      +...|...+..+.    .+++++.+.++|++.+.....--...|...... .+......+.+++.+..            
T Consensus        84 s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~------------  150 (493)
T 2uy1_A           84 SYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL------------  150 (493)
T ss_dssp             CHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH------------
T ss_pred             cHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh------------
Confidence            5566766666543    235677788888888763211111222222111 11111222222222111            


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc--CC-----hhHHHHHHHHHHHCCCCccccHHHHHH
Q 006744          313 SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM--GR-----MDNFFKLLAQMEKLKFSVAADLEKFFE  385 (632)
Q Consensus       313 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~  385 (632)
                               +.+..|..+++++...-...+...|...+.--...  +-     .+.+..+|+++..... ....++...+
T Consensus       151 ---------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya  220 (493)
T 2uy1_A          151 ---------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYS  220 (493)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHH
Confidence                     12222333333222100001122333333221111  00     2335566666665432 2344444455


Q ss_pred             HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC---------CC---CcCHHHHHHH
Q 006744          386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL---------NL---EVNSLSFSIA  453 (632)
Q Consensus       386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~---~p~~~t~~~l  453 (632)
                      ..+.+.|+.+.|..+|++.... +.+...|..    |+...+.++.   ++.+.+.         +.   ......|...
T Consensus       221 ~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y  292 (493)
T 2uy1_A          221 EYLIGIGQKEKAKKVVERGIEM-SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINH  292 (493)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence            5556677777777777777766 444443332    2221111221   1221110         00   0112446666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC
Q 006744          454 IQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK-IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG  532 (632)
Q Consensus       454 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  532 (632)
                      +....+.++.+.|..+|+.+ +.. ..+...|......-.. .++.+.|..+|+..++..+..|+  .+...+......|
T Consensus       293 ~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~--~~~~yid~e~~~~  368 (493)
T 2uy1_A          293 LNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTL--LKEEFFLFLLRIG  368 (493)
T ss_dssp             HHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHH--HHHHHHHHHHHcC
Confidence            66666778899999999998 321 2344445433332222 33699999999999887654443  3455667667889


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       533 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      +.+.|..+|+.+.     .....|...+.--...|+.+.+.++++++.+
T Consensus       369 ~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          369 DEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             CHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999872     3577888888877888999999998888874

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.01  E-value=1.3e-07  Score=88.43  Aligned_cols=83  Identities=8%  Similarity=-0.041  Sum_probs=44.7

Q ss_pred             ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCCCHHhHHHHHHHHHhcCC
Q 006744          427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEM-----S----QVPSVAAYNCLTKGLCKIGE  497 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~----~~p~~~~~~~li~~~~~~g~  497 (632)
                      ++.+|..+|+++.+.  .|+..+...++.++.+.|++++|.+.++.+.+.     .    -.-+..++..+|......|+
T Consensus       193 ~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          193 TATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             TTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            666777777776543  344333334444666667777777776655432     0    02235555444444444555


Q ss_pred             HHHHHHHHHHHhhcCC
Q 006744          498 IDAAMMLVRDCLGNVA  513 (632)
Q Consensus       498 ~~~A~~~~~~~~~~~~  513 (632)
                        +|.+++.++.+..+
T Consensus       271 --~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          271 --DTEDLTNQLVKLDH  284 (310)
T ss_dssp             --TTHHHHHHHHHTTC
T ss_pred             --HHHHHHHHHHHhCC
Confidence              66666666665443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.00  E-value=1.4e-07  Score=88.06  Aligned_cols=182  Identities=10%  Similarity=0.031  Sum_probs=121.3

Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNL-EVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      |+..|+++.+.+..+..++..+..++...|++++|++++.+....+- .-+...+..+++.+.+.|+.+.|.+.++.|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            56677766665544455556777888888888888888888766542 13455677777888888888888888888876


Q ss_pred             CCCCC-----CHHhHHHHHHHH--HhcC--CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          476 MSQVP-----SVAAYNCLTKGL--CKIG--EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       476 ~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      .  .|     +..+...|..++  ...|  ++.+|..+|+++.+..   |+..+...++.++.+.|++++|.+.++.+.+
T Consensus       165 ~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          165 A--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             H--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             c--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4  34     244445555552  2233  7888888888876543   4322223334467788888888888886654


Q ss_pred             C-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          547 E-----G----CPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       547 ~-----g----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      .     +    -+.|..++..++......|+  +|.+++.++.+..+.
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence            3     0    14466677666666666776  788888888887643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.00  E-value=5.5e-08  Score=91.01  Aligned_cols=174  Identities=9%  Similarity=-0.064  Sum_probs=99.2

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC-HHhH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN---SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PS-VAAY  485 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~-~~~~  485 (632)
                      +...+-.+...+.+.|++++|...|+++.+.. +-+   ...+..+..++...|++++|...|+++++.... +. ...+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            33444445555555555555555555555432 111   334444455555555555555555555543211 11 2334


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHhhcCCCCChHHH---------------HHHHHHHHHHcCCHHHHHHHHH
Q 006744          486 NCLTKGLCK--------IGEIDAAMMLVRDCLGNVASGPTEFK---------------YALTILHVCRSGEAEKIIEVLN  542 (632)
Q Consensus       486 ~~li~~~~~--------~g~~~~A~~~~~~~~~~~~~~p~~~~---------------~~~l~~~~~~~g~~~~a~~~~~  542 (632)
                      ..+..++..        .|++++|+..|+++++..+..+....               +..+...|...|++++|+..|+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            444455555        55555555555555544333222221               1346777888899999999999


Q ss_pred             HHHhCCCC--CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCC
Q 006744          543 EMTQEGCP--PNEVICSAIISGMCKH----------GTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       543 ~m~~~g~~--p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~  585 (632)
                      ++.+....  .....+..+..+|...          |++++|...|+++.+....
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~  227 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD  227 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence            88876311  1345677788888766          8889999999999887643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.97  E-value=3.1e-08  Score=92.73  Aligned_cols=62  Identities=8%  Similarity=0.007  Sum_probs=47.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhC
Q 006744          486 NCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRS----------GEAEKIIEVLNEMTQE  547 (632)
Q Consensus       486 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~  547 (632)
                      ..+...|.+.|++++|+..|+++++..+..+ ....+..+..+|...          |++++|+..++++.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            4567788899999999999999887654433 344566677777755          8889999999998876

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.93  E-value=5.4e-08  Score=80.13  Aligned_cols=130  Identities=13%  Similarity=0.131  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC  319 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  319 (632)
                      .|..+...+...|++++|.++++++.+.+.. +...+..+...+...|++++|...++++...+.. +...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            5667788888889999999999988876543 6677888888888889999999999888876543 5667888888888


Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006744          320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKL  372 (632)
Q Consensus       320 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  372 (632)
                      ..|++++|.++++++.+... .+...+..+...+...|++++|...+.++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            89999999999988876542 24566777777888888888888888777654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.93  E-value=3.9e-06  Score=85.83  Aligned_cols=340  Identities=10%  Similarity=-0.027  Sum_probs=177.9

Q ss_pred             CChhHHhHHHHHHHh-----------------cC-CHHHHHHHHHHHHhC-CCC-cCHHhHHHHHHHHH----hcCChhH
Q 006744          166 NLFRAADQVPELMDS-----------------QG-RIAEMLEILEKMRRN-LCK-PDVFAYTAMIRVLA----AERNLDA  221 (632)
Q Consensus       166 ~~~~~a~~l~~~~~~-----------------~g-~~~~a~~~~~~m~~~-~~~-~~~~~~~~li~~~~----~~g~~~~  221 (632)
                      |.++.++.+|++...                 .| ..+....+|+..... |.. .+...|...+..+.    ..|+++.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            667777777776553                 22 235567778876653 433 36778888887654    3467889


Q ss_pred             HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD  301 (632)
Q Consensus       222 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  301 (632)
                      +.++|++.......--...|...... ....+...+.+++.+..                     +.+..|..+++.+..
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~  165 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQP  165 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHH
Confidence            99999999874211111222222211 11111222222222211                     111222222222221


Q ss_pred             CCCCCCHhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006744          302 SGYRADLGIYNSIIGGLCRVK-------QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKF  374 (632)
Q Consensus       302 ~g~~~~~~~~~~li~~~~~~g-------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  374 (632)
                      .-...+...|...+.--...+       ..+.+..+|+++.... .-+...|...+..+.+.|+.+.|..++++....  
T Consensus       166 ~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--  242 (493)
T 2uy1_A          166 LIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--  242 (493)
T ss_dssp             HHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--
Confidence            000012223433333222110       0233445555555432 223444555555555566666666666666555  


Q ss_pred             CccccHHHHHHHHhhhcccHHHHHHHHHHHHhCC-----------C-C-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744          375 SVAADLEKFFEFLVGKEERIMMALDVFEELKGKG-----------Y-S-SVPIYNILMGALLEIGEVKKALYLFGKMRGL  441 (632)
Q Consensus       375 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  441 (632)
                      +.+..+..    .|+...+.++.   ++.+.+.-           . . ...+|...+..+.+.++.+.|..+|++. ..
T Consensus       243 P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~  314 (493)
T 2uy1_A          243 SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN  314 (493)
T ss_dssp             CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred             CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence            21211111    11111111111   11111100           0 0 2345777777777788899999999998 32


Q ss_pred             CCCcCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH
Q 006744          442 NLEVNSLSFSIAIQCHV-ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK  520 (632)
Q Consensus       442 ~~~p~~~t~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~  520 (632)
                      . ..+...|......-. ..++.+.|..+|+...+... -+...+...++...+.|+.+.|..+|+.+.      .....
T Consensus       315 ~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~l  386 (493)
T 2uy1_A          315 E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRM  386 (493)
T ss_dssp             S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHH
T ss_pred             C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHH
Confidence            1 223344433222222 23479999999999988542 234556667888888999999999999862      24566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          521 YALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       521 ~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      |...+.--...|+.+.+.++++++.+
T Consensus       387 w~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          387 WDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77666666677999999998888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.92  E-value=1.5e-06  Score=82.04  Aligned_cols=223  Identities=10%  Similarity=0.034  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC--ChhHHHHHHHHHHHcCCcccHHhHHHHHHHH----Hhc---CCHH
Q 006744          220 DACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG--RVVRGHELFREMKENGILIDRAIYGVLIEGL----VGE---GKVG  290 (632)
Q Consensus       220 ~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~---g~~~  290 (632)
                      ++|+++++.++..+ +-+...|+.--.++...|  ++++++++++.+...+.+ +..+|+.--..+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence            46666666666543 223445555555555555  666666666666665443 444444433333    333   4556


Q ss_pred             HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          291 KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD--KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       291 ~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      +++++++.+.+...+ +..+|+.-.-.+.+.|.++  +++++++++.+.+.. |...|+.-.......+..         
T Consensus       128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~---------  196 (306)
T 3dra_A          128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL---------  196 (306)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG---------
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc---------
Confidence            666666666655443 5555555555555555555  555555555554333 333333222222221110         


Q ss_pred             HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh-HHHHHHHHhhCC--CCc
Q 006744          369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK-ALYLFGKMRGLN--LEV  445 (632)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~--~~p  445 (632)
                                          .....++++++.++.+...++.+...|+.+...+.+.|+..+ +..+..++...+  -..
T Consensus       197 --------------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (306)
T 3dra_A          197 --------------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVT  256 (306)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEES
T ss_pred             --------------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCC
Confidence                                000125666666777666666677777777777777776443 444555544322  122


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          446 NSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       446 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      +...+..+..++.+.|+.++|.++++.+.+
T Consensus       257 s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          257 SSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            344555555555566666666666666554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.91  E-value=2.9e-07  Score=83.88  Aligned_cols=185  Identities=10%  Similarity=-0.029  Sum_probs=110.3

Q ss_pred             HHHHHHhhhcccHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH----HHHHHH
Q 006744          382 KFFEFLVGKEERIMMALDVFEELKGKGYSS---VPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL----SFSIAI  454 (632)
Q Consensus       382 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----t~~~ll  454 (632)
                      ......+.+.|++++|+..|+++.+..+.+   ...+..+..+|.+.|++++|+..|+++.+..  |+..    .+..+.
T Consensus         8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHH
Confidence            334455667777777777777777654432   3466667777777777777777777776642  2221    233333


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH--------------
Q 006744          455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK--------------  520 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~--------------  520 (632)
                      .++...+..     .+            ..|..+...+...|++++|+..|+++++..+..+....              
T Consensus        86 ~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~  148 (225)
T 2yhc_A           86 LTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAK  148 (225)
T ss_dssp             HHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHH
Confidence            333331100     00            00111112222345556666666655544333332211              


Q ss_pred             -HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744          521 -YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNE---VICSAIISGMCKHGTLEEARKVFTNLRERKLLT  586 (632)
Q Consensus       521 -~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  586 (632)
                       ...+...+.+.|++++|+..|+++.+.. +.+.   ..+..+..+|.+.|++++|.+.++.+...+...
T Consensus       149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          149 YEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence             1235667788999999999999999863 3233   568889999999999999999999999887643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.89  E-value=5.7e-08  Score=104.19  Aligned_cols=174  Identities=12%  Similarity=0.025  Sum_probs=103.1

Q ss_pred             hhcccHHHHHHHHHHHH--------hCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 006744          389 GKEERIMMALDVFEELK--------GKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES  460 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~  460 (632)
                      ...|++++|++.+++..        +..+.+...|..+..+|...|++++|+..|++..+.. +-+...+..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence            45566666666666666        4444456666666666777777777777776666542 23445566666666667


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 006744          461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEV  540 (632)
Q Consensus       461 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  540 (632)
                      |++++|.+.|+++++... -+...+..+..+|.+.|++++ ++.|+++++...  .+...|..+..++...|++++|++.
T Consensus       481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTND--GVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC--chHHHHHHHHHHHHHcCCHHHHHHH
Confidence            777777777776666432 235556666666667777766 666666665422  2334555566666677777777777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006744          541 LNEMTQEGCPPNEVICSAIISGMCKHGT  568 (632)
Q Consensus       541 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~  568 (632)
                      |+++.+.+ +-+...|..+..++...|+
T Consensus       557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence            76666552 2234455555555544443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.87  E-value=2.4e-08  Score=107.17  Aligned_cols=169  Identities=13%  Similarity=0.011  Sum_probs=94.5

Q ss_pred             HhcCChhHHHHHHHHHH--------HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006744          249 CKGGRVVRGHELFREMK--------ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCR  320 (632)
Q Consensus       249 ~~~g~~~~a~~~~~~m~--------~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~  320 (632)
                      ...|++++|++.+++..        +... .+...+..+...|...|++++|++.|+++.+.... +...|..+..+|.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            55677777777777766        3322 24556666667777777777777777777665443 55666666777777


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHH
Q 006744          321 VKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDV  400 (632)
Q Consensus       321 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  400 (632)
                      .|++++|+..|++..+.... +...+..+..++.+.|++++ .+.|+++.+.... +...+..+..+|.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            77777777777776654322 34455566666666666666 6666666554432 222333333334444444444444


Q ss_pred             HHHHHhCCCCChhHHHHHHHHH
Q 006744          401 FEELKGKGYSSVPIYNILMGAL  422 (632)
Q Consensus       401 ~~~~~~~~~~~~~~~~~li~~~  422 (632)
                      |+++.+.++.+...|..+..++
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HHhhcccCcccHHHHHHHHHHH
Confidence            4444433333333333333333

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.87  E-value=9.1e-08  Score=85.97  Aligned_cols=131  Identities=15%  Similarity=0.049  Sum_probs=67.0

Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006744          418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGE  497 (632)
Q Consensus       418 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~  497 (632)
                      +..+|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++++... -+..++..+..+|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence            6666666666666666666666542 23445555666666666666666666666665431 235555555555544432


Q ss_pred             --HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006744          498 --IDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVI  555 (632)
Q Consensus       498 --~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~  555 (632)
                        .+.+...++.+.   ...|....+.....++...|++++|+..|++..+.  .|+...
T Consensus       138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~  192 (208)
T 3urz_A          138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA  192 (208)
T ss_dssp             HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred             HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence              233344443332   11222222333344444556666666666666654  345443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.86  E-value=2.5e-07  Score=83.36  Aligned_cols=175  Identities=13%  Similarity=0.059  Sum_probs=131.6

Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 006744          396 MALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESG----DILEACECHN  471 (632)
Q Consensus       396 ~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~  471 (632)
                      +|.+.|++..+.+  +...+..+...|...+++++|+..|++..+.|   +...+..+...|.. +    +.++|.++|+
T Consensus         4 eA~~~~~~aa~~g--~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            4 EPGSQYQQQAEAG--DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             CTTHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHCC--CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            3555666666654  67778888888888888888888888888765   45566666666666 6    7888888888


Q ss_pred             HHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCC---hHHHHHHHHHHHHH----cCCHHHHHHH
Q 006744          472 KIIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVASGP---TEFKYALTILHVCR----SGEAEKIIEV  540 (632)
Q Consensus       472 ~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p---~~~~~~~l~~~~~~----~g~~~~a~~~  540 (632)
                      +..+.+   +...+..|...|..    .+++++|++.|++..+.   .+   ....+..|...|..    .++.++|+.+
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  151 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEY  151 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            887754   56667777777776    78899999999887754   33   25666678888877    7789999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCC
Q 006744          541 LNEMTQEGCPPNEVICSAIISGMCKH-G-----TLEEARKVFTNLRERKL  584 (632)
Q Consensus       541 ~~~m~~~g~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~~  584 (632)
                      |++..+.  ..+...+..|...|..- |     +.++|.++|++..+.|.
T Consensus       152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9998887  23455677777777653 3     89999999999988875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.86  E-value=3e-08  Score=95.33  Aligned_cols=161  Identities=10%  Similarity=0.011  Sum_probs=106.8

Q ss_pred             hhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----C
Q 006744          412 VPIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEMSQVP-----S  481 (632)
Q Consensus       412 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p-----~  481 (632)
                      ..+|+.+...|...|++++|+..|++..+.    |-.. -..++..+...|.. |++++|...|++.++.....     .
T Consensus        76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~  154 (307)
T 2ifu_A           76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA  154 (307)
T ss_dssp             HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence            346778888888889999988888876543    2111 13466777777877 99999999988877532111     1


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---Ch-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCC--H
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG---PT-EFKYALTILHVCRSGEAEKIIEVLNEMTQEGC--PPN--E  553 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~--~p~--~  553 (632)
                      ..++..+...|...|++++|+..|++++......   +. ...+..++..+...|++++|+..|++.. ...  ...  .
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~  233 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC  233 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence            4567788888999999999999999887532111   11 2245556667777799999999999887 421  111  1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH
Q 006744          554 VICSAIISGMCKHGTLEEARKV  575 (632)
Q Consensus       554 ~~~~~l~~~~~~~g~~~~A~~~  575 (632)
                      .....++.++ ..|+.+.+.++
T Consensus       234 ~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          234 AALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHHHHH-HhcCHHHHHHH
Confidence            2344555555 56777666553

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.84  E-value=1e-07  Score=91.62  Aligned_cols=160  Identities=10%  Similarity=0.006  Sum_probs=85.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCC---Cc--CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCc-ccHHhHHHH
Q 006744          210 IRVLAAERNLDACLRVWEEMKKDLV---EA--DVMAYVTLIMGLCKGGRVVRGHELFREMKEN----GIL-IDRAIYGVL  279 (632)
Q Consensus       210 i~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~l  279 (632)
                      ...|...|++++|.+.|.+..+...   .+  -..+|+.+..+|...|++++|+..|++..+.    |-. .-..++..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3445566666666666665543210   00  1235666666666777777777777665442    111 013455666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCC-----CHhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HhcHHHH
Q 006744          280 IEGLVGEGKVGKACDLLKDLVDSGYRA-----DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DLAPD-FSTVNPL  349 (632)
Q Consensus       280 i~~~~~~g~~~~a~~~~~~m~~~g~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l  349 (632)
                      ...|.. |++++|+..|++..+.....     ...+++.+...|.+.|++++|+..|++..+.    +..+. ...+..+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            666666 77777777776665421100     1345666666677777777777777666542    11111 1133344


Q ss_pred             HHHHHhcCChhHHHHHHHHHH
Q 006744          350 LVCCAEMGRMDNFFKLLAQME  370 (632)
Q Consensus       350 l~~~~~~~~~~~a~~~~~~~~  370 (632)
                      ..++...|++++|...+++..
T Consensus       202 g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHHHh
Confidence            445555566666666666555

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.84  E-value=5.4e-08  Score=84.86  Aligned_cols=157  Identities=11%  Similarity=-0.006  Sum_probs=81.4

Q ss_pred             HHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH-HHHcCCH
Q 006744          385 EFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-HVESGDI  463 (632)
Q Consensus       385 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~  463 (632)
                      ...+...|++++|...|++..+..+.+...+..+...+...|++++|+..|++.....  |+...+...... +...+..
T Consensus        13 a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           13 VSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE   90 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence            3445556666666666666665555566777777777777777777777777765532  333222211111 1111222


Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006744          464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNE  543 (632)
Q Consensus       464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  543 (632)
                      ..|...+++.++... -+...+..+..++...|++++|+..|+++++..+...+...+..+...+...|+.++|+..|++
T Consensus        91 ~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A           91 SPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             CHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             chHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            234555555554321 1345555555556666666666666655554322222233344445555555555555555544


Q ss_pred             H
Q 006744          544 M  544 (632)
Q Consensus       544 m  544 (632)
                      .
T Consensus       170 a  170 (176)
T 2r5s_A          170 Q  170 (176)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.83  E-value=8.1e-08  Score=86.30  Aligned_cols=107  Identities=8%  Similarity=0.004  Sum_probs=56.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCc-CHHhHHH----------------HHHHHHhcCChhHHHHHHHHHHHcCCcccH
Q 006744          211 RVLAAERNLDACLRVWEEMKKDLVEA-DVMAYVT----------------LIMGLCKGGRVVRGHELFREMKENGILIDR  273 (632)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  273 (632)
                      ..+...|++++|+..|++..+..  | +...|..                +..++.+.|++++|+..|++..+.... +.
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~   88 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN-NV   88 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CH
Confidence            34445555666666555555432  2 2223333                555555556666666666555554333 45


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744          274 AIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV  321 (632)
Q Consensus       274 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  321 (632)
                      ..+..+..+|...|++++|+..|++..+..+. +..+|..+...|...
T Consensus        89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           89 DCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH
Confidence            55555555566666666666666655554433 444555555554443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.83  E-value=1e-07  Score=90.44  Aligned_cols=162  Identities=10%  Similarity=0.025  Sum_probs=95.1

Q ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHH-HHHH
Q 006744          380 LEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAI-QCHV  458 (632)
Q Consensus       380 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll-~~~~  458 (632)
                      ....+...+...|++++|...|++..+..+.+...+..+...+...|++++|...++++...  .|+........ ..+.
T Consensus       119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          119 LXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHH
Confidence            33444445556666666666666666666666667777777777777777777777766553  34433222222 2345


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHH
Q 006744          459 ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKII  538 (632)
Q Consensus       459 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  538 (632)
                      ..++.+.|...+++..+.. +.+...+..+...|...|++++|+..|++++...+...+...+..++..+...|+.++|.
T Consensus       197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~  275 (287)
T 3qou_A          197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA  275 (287)
T ss_dssp             HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence            5566666666666666543 224556666666666777777777777666655333333444555555555556655555


Q ss_pred             HHHHHH
Q 006744          539 EVLNEM  544 (632)
Q Consensus       539 ~~~~~m  544 (632)
                      ..+++.
T Consensus       276 ~~~r~a  281 (287)
T 3qou_A          276 SXYRRQ  281 (287)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.80  E-value=6.3e-08  Score=84.38  Aligned_cols=161  Identities=10%  Similarity=0.066  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH-HH
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG-LV  284 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~  284 (632)
                      +..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+...  +...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence            3344455566666666666666554432 22445566666666666666666666666544322  32222221111 11


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHhcHHHHHHHHHhcCChhHHH
Q 006744          285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP-DFSTVNPLLVCCAEMGRMDNFF  363 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~  363 (632)
                      ..++..+|...|++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            212223355666666554332 45566666666666666666666666666543322 2335555666666666666666


Q ss_pred             HHHHHHH
Q 006744          364 KLLAQME  370 (632)
Q Consensus       364 ~~~~~~~  370 (632)
                      ..|++..
T Consensus       165 ~~y~~al  171 (176)
T 2r5s_A          165 SKYRRQL  171 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.78  E-value=6.5e-07  Score=81.47  Aligned_cols=206  Identities=8%  Similarity=-0.083  Sum_probs=127.4

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH--hcHH
Q 006744          272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRAD--LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDF--STVN  347 (632)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~  347 (632)
                      +...+..+...+.+.|++++|+..|+++.+..+...  ...+..+..+|.+.|++++|+..|++..+.......  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            345566677788899999999999999987643211  356777888999999999999999998875332111  1333


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006744          348 PLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE  427 (632)
Q Consensus       348 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  427 (632)
                      .+..++...+..     .+..            +..+...+...|+.++|...|+++.+..+.+..++........-   
T Consensus        83 ~~g~~~~~~~~~-----~~~~------------~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~---  142 (225)
T 2yhc_A           83 MRGLTNMALDDS-----ALQG------------FFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL---  142 (225)
T ss_dssp             HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH---
T ss_pred             HHHHHHHhhhhh-----hhhh------------hhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH---
Confidence            334444333211     1111            11122234456888999999999888876665554432221110   


Q ss_pred             hhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHH
Q 006744          428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS--VAAYNCLTKGLCKIGEIDAAMMLV  505 (632)
Q Consensus       428 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~  505 (632)
                             ...+.        .....+...+.+.|++++|...|+++++......  ...+..+..+|.+.|+.++|.+.+
T Consensus       143 -------~~~~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          143 -------KDRLA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             -------HHHHH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -------HHHHH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence                   00000        0112445677888899999999988887542211  256777888888999999999998


Q ss_pred             HHHhhcC
Q 006744          506 RDCLGNV  512 (632)
Q Consensus       506 ~~~~~~~  512 (632)
                      +.+....
T Consensus       208 ~~l~~~~  214 (225)
T 2yhc_A          208 KIIAANS  214 (225)
T ss_dssp             HHHHHCC
T ss_pred             HHHHhhC
Confidence            8877553

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.77  E-value=1.8e-07  Score=88.71  Aligned_cols=63  Identities=14%  Similarity=0.059  Sum_probs=34.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      ...+..+...+...|++++|...|++..+..+. +...+..+...+.+.|++++|...+++...
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~  179 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPL  179 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence            344445555555556666666666655554333 444555555666666666666666655543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.77  E-value=7.2e-07  Score=80.27  Aligned_cols=176  Identities=13%  Similarity=-0.054  Sum_probs=129.3

Q ss_pred             HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC----ChhHHHHHHH
Q 006744          187 MLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG----RVVRGHELFR  262 (632)
Q Consensus       187 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~  262 (632)
                      |+..|++..+.   -+..++..|...|...+++++|++.|++..+.|   +...+..+...|.. +    ++++|.++|+
T Consensus         5 A~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            44555555554   367778888888888899999999999888765   56677777777777 6    8889999998


Q ss_pred             HHHHcCCcccHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHc----cCCHHHHHHHHHH
Q 006744          263 EMKENGILIDRAIYGVLIEGLVG----EGKVGKACDLLKDLVDSGYR-ADLGIYNSIIGGLCR----VKQFDKAYKLFEV  333 (632)
Q Consensus       263 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~  333 (632)
                      +..+.|   +...+..|...|..    .++.++|++.|++..+.|.. .+...+..|...|..    .+++++|+.+|++
T Consensus        78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            887765   56677778778876    78889999999888877542 025677778888877    7788899998888


Q ss_pred             HHhCCCCCCHhcHHHHHHHHHhc-C-----ChhHHHHHHHHHHHCCC
Q 006744          334 TVQDDLAPDFSTVNPLLVCCAEM-G-----RMDNFFKLLAQMEKLKF  374 (632)
Q Consensus       334 m~~~~~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~~  374 (632)
                      ..+.+  .+...+..|...|... |     +.++|..+++...+.|.
T Consensus       155 A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          155 SSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            87752  2334555566666543 2     77888888887777654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.77  E-value=1.7e-07  Score=98.80  Aligned_cols=153  Identities=12%  Similarity=-0.034  Sum_probs=118.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHH
Q 006744          182 GRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELF  261 (632)
Q Consensus       182 g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  261 (632)
                      |++++|+..|++..+... .+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus         3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            556677777777665432 357889999999999999999999999998874 446788999999999999999999999


Q ss_pred             HHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---CCHHHHHHHHHHHHhCC
Q 006744          262 REMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV---KQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~  338 (632)
                      ++..+.... +...+..+..+|.+.|++++|.+.|++..+.... +...+..+...+...   |++++|.+.+++..+.+
T Consensus        81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            999887544 6788999999999999999999999999887554 677888899999999   99999999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.77  E-value=3.2e-08  Score=83.55  Aligned_cols=110  Identities=9%  Similarity=-0.030  Sum_probs=49.7

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHH
Q 006744          215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACD  294 (632)
Q Consensus       215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  294 (632)
                      ..|++++|++.++...... +-+...+-.+...|.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+.
T Consensus         9 ~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~   86 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVE   86 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHH
Confidence            3344445544444443321 111223334444455555555555555554444322 34445555555555555555555


Q ss_pred             HHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 006744          295 LLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA  327 (632)
Q Consensus       295 ~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A  327 (632)
                      .|++..+..+. +..+|..+...|.+.|++++|
T Consensus        87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a  118 (150)
T 4ga2_A           87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGR  118 (150)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSH
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHH
Confidence            55554444322 344444444555555554433

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.76  E-value=6.4e-08  Score=81.70  Aligned_cols=139  Identities=9%  Similarity=-0.040  Sum_probs=110.9

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      +|++++|+..++...... +-+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|+..
T Consensus        10 ~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~   87 (150)
T 4ga2_A           10 KADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC   87 (150)
T ss_dssp             HHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence            456777777777766532 1234567788899999999999999999998874 45788999999999999999999999


Q ss_pred             HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744          261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL-LKDLVDSGYRADLGIYNSIIGGLCRVKQ  323 (632)
Q Consensus       261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~~~~~~~li~~~~~~g~  323 (632)
                      |++..+.... +..+|..+...|.+.|+.++|.+. +++..+..+. +..+|......+...|+
T Consensus        88 ~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           88 YRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence            9999997654 688999999999999999876665 5888876544 66777777777766664

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.73  E-value=2.6e-07  Score=97.31  Aligned_cols=156  Identities=13%  Similarity=-0.035  Sum_probs=120.8

Q ss_pred             cCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHH
Q 006744          216 ERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDL  295 (632)
Q Consensus       216 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  295 (632)
                      .|++++|++.|++..+.. +-+...|..+...+...|++++|.+.|++..+.... +...+..+..+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999988764 346788999999999999999999999999987544 688999999999999999999999


Q ss_pred             HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 006744          296 LKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM---GRMDNFFKLLAQMEKL  372 (632)
Q Consensus       296 ~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~  372 (632)
                      |++..+.... +...|..+...|.+.|++++|.+.|++..+... -+...+..+..++...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999987654 678899999999999999999999999987643 2567788888999999   9999999999999887


Q ss_pred             CCC
Q 006744          373 KFS  375 (632)
Q Consensus       373 ~~~  375 (632)
                      +..
T Consensus       158 ~p~  160 (568)
T 2vsy_A          158 GVG  160 (568)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.73  E-value=2e-06  Score=81.82  Aligned_cols=169  Identities=7%  Similarity=-0.112  Sum_probs=122.9

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CC--H
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLEVN-S----LSFSIAIQCHVESGDILEACECHNKIIEMSQV---PS--V  482 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---p~--~  482 (632)
                      ..+...+..+...|++++|.+.+.+..+...... .    ..+..+...+...|++++|...+++..+....   +.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3455667788889999999999888776532211 1    12334555667788999999999988754221   12  4


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHh---hcCCCCCh--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC----CCC-C
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCL---GNVASGPT--EFKYALTILHVCRSGEAEKIIEVLNEMTQEG----CPP-N  552 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g----~~p-~  552 (632)
                      .+++.+...|...|++++|+..|++++   +..+..+.  ...|..+...|...|++++|++.+++..+..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            578888999999999999999999887   33222222  2477788999999999999999999877541    111 1


Q ss_pred             HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006744          553 EVICSAIISGMCKHGTLEEA-RKVFTNLRE  581 (632)
Q Consensus       553 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~  581 (632)
                      ..+|..+..+|.+.|++++| ...+++...
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            66888999999999999999 777877654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.72  E-value=4.4e-06  Score=79.68  Aligned_cols=169  Identities=11%  Similarity=-0.017  Sum_probs=116.5

Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhc-C-ChhHHHHHH
Q 006744          185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAER-NLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKG-G-RVVRGHELF  261 (632)
Q Consensus       185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~  261 (632)
                      ++|+++++.+...+.. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-..++... + +.+++++++
T Consensus        71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            3445555555554322 5666777777777777 5888888888888765 44667777776666665 6 788888888


Q ss_pred             HHHHHcCCcccHHhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-------HHH
Q 006744          262 REMKENGILIDRAIYGVLIEGLVGEGKVG--------KACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ-------FDK  326 (632)
Q Consensus       262 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-------~~~  326 (632)
                      +++.+.... |..+|+.-.-.+.+.|.++        ++++.++++.+..+. |...|+.....+.+.+.       +++
T Consensus       149 ~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          149 HGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence            888877555 6667766555555555555        888888888887665 78888888777777775       678


Q ss_pred             HHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744          327 AYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       327 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  358 (632)
                      +++.++++...... |...|+.+-..+.+.|.
T Consensus       227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence            88888877765433 66666665555555554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.68  E-value=1.1e-06  Score=79.12  Aligned_cols=129  Identities=9%  Similarity=-0.039  Sum_probs=100.3

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV  284 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  284 (632)
                      .+..+...+...|++++|++.|++..    .++...|..+..++...|++++|.+.|++..+.... +...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence            35556667778888888888888764    567788888888888888888888888888876533 6778888888888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC---------------CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 006744          285 GEGKVGKACDLLKDLVDSGYRA---------------DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~~g~~~---------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      ..|++++|...|++..+.....               ....|..+..+|.+.|++++|...|++..+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            8888888888888888753321               12577788888888899999999988887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.67  E-value=2.3e-06  Score=81.49  Aligned_cols=164  Identities=7%  Similarity=-0.012  Sum_probs=115.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCC-CCcCH----HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc-cc----HHhHH
Q 006744          208 AMIRVLAAERNLDACLRVWEEMKKDL-VEADV----MAYVTLIMGLCKGGRVVRGHELFREMKENGIL-ID----RAIYG  277 (632)
Q Consensus       208 ~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~  277 (632)
                      ..+..+...|++++|.+++++..+.. ..++.    ..+..+...+...|++++|+..|++..+.... .+    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34667788899999999999887643 12221    13334666667778899999999998874322 12    33688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HhcH
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDS-----GYRAD-LGIYNSIIGGLCRVKQFDKAYKLFEVTVQD----DLAPD-FSTV  346 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~  346 (632)
                      .+...|...|++++|+..|+++.+.     +..+. ..+|..+...|.+.|++++|+..+++..+.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8888999999999999999888741     11112 337788888999999999999998877642    22222 4567


Q ss_pred             HHHHHHHHhcCC-hhHHHHHHHHHHH
Q 006744          347 NPLLVCCAEMGR-MDNFFKLLAQMEK  371 (632)
Q Consensus       347 ~~ll~~~~~~~~-~~~a~~~~~~~~~  371 (632)
                      ..+..++.+.|+ +++|.+.+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            777788888884 5888888877643

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.65  E-value=2.3e-05  Score=74.72  Aligned_cols=183  Identities=9%  Similarity=-0.040  Sum_probs=104.3

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhc-C-CH
Q 006744          213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-RVVRGHELFREMKENGILIDRAIYGVLIEGLVGE-G-KV  289 (632)
Q Consensus       213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g-~~  289 (632)
                      ..+.+..++|+++++++...+ +-+..+|+.--.++...| .+++++++++.+.....+ +..+|+.-...+.+. + +.
T Consensus        64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred             HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence            334444567777777777654 334555666666666666 477777777777776555 666666665555555 5 66


Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFD--------KAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       290 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      ++++++++.+.+...+ |..+|+.-.-.+.+.|.++        ++++.++++.+.... |...|+.....+.+.+... 
T Consensus       142 ~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~-  218 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE-  218 (349)
T ss_dssp             HHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC-
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc-
Confidence            7777777777766544 6666665555544444444        555555555554332 4444443333333322200 


Q ss_pred             HHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 006744          362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE  427 (632)
Q Consensus       362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  427 (632)
                                                 .....++++++.+++.....+.+...|+.+-..+.+.|+
T Consensus       219 ---------------------------~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          219 ---------------------------TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             ---------------------------cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence                                       000124566666666666666677777766666665554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.64  E-value=5.7e-06  Score=78.69  Aligned_cols=163  Identities=7%  Similarity=-0.085  Sum_probs=92.1

Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCC-CCcCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHhHHHH
Q 006744          419 MGALLEIGEVKKALYLFGKMRGLN-LEVNSL----SFSIAIQCHVESGDILEACECHNKIIEMSQV-PS----VAAYNCL  488 (632)
Q Consensus       419 i~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l  488 (632)
                      +..+...|++++|..++++..... ..++..    .+..+...+...|++++|...++++.+.... .+    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            445555666666666666655432 112211    1223444455555666666666666653211 12    2246666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhc---C-CCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHH
Q 006744          489 TKGLCKIGEIDAAMMLVRDCLGN---V-ASGPTE-FKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPN-EVICSA  558 (632)
Q Consensus       489 i~~~~~~g~~~~A~~~~~~~~~~---~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~  558 (632)
                      ...|...|++++|+..|+++++.   . ...+.. .+|..+...|...|++++|++.+++..+.    +.... ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            66677777777777777666521   1 112222 24566677777777777777777665542    21222 567778


Q ss_pred             HHHHHHhcC-CHHHHHHHHHHHHH
Q 006744          559 IISGMCKHG-TLEEARKVFTNLRE  581 (632)
Q Consensus       559 l~~~~~~~g-~~~~A~~~~~~m~~  581 (632)
                      +..+|.+.| ++++|.+.+++..+
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHH
Confidence            888888888 46888888777754

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.63  E-value=3.5e-07  Score=86.38  Aligned_cols=97  Identities=7%  Similarity=-0.056  Sum_probs=55.3

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG  317 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  317 (632)
                      ...+..+...+...|++++|...|++..+.... +...|..+..+|.+.|++++|+..+++..+.... +...+..+..+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   81 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            344455555555566666666666655554322 4555555666666666666666666666554332 44555566666


Q ss_pred             HHccCCHHHHHHHHHHHHh
Q 006744          318 LCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~  336 (632)
                      |...|++++|+..|++..+
T Consensus        82 ~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.62  E-value=4.2e-06  Score=75.19  Aligned_cols=130  Identities=14%  Similarity=-0.056  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC  493 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  493 (632)
                      .+..+...+...|++++|...|++..    .|+...+..+...+...|++++|...|++..+.. ..+...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            35566777888888888888888763    5577788888888888888888888888888754 235677888888888


Q ss_pred             hcCCHHHHHHHHHHHhhcCCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006744          494 KIGEIDAAMMLVRDCLGNVASGP--------------TEFKYALTILHVCRSGEAEKIIEVLNEMTQEG  548 (632)
Q Consensus       494 ~~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g  548 (632)
                      ..|++++|+..|+++++..+..+              ....+..+...+...|++++|++.|+++.+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            88888888888888876543322              23556667788888888888888888888763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.62  E-value=8.8e-07  Score=81.61  Aligned_cols=189  Identities=9%  Similarity=-0.054  Sum_probs=139.1

Q ss_pred             hcccHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCChhhHHHHHHHHhhCCCCcC----------------
Q 006744          390 KEERIMMALDVFEELKGKGYSSVPIYNIL-------MGALLEIGEVKKALYLFGKMRGLNLEVN----------------  446 (632)
Q Consensus       390 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------  446 (632)
                      ..++...|.+.|.++...++.....|+.+       ...+...++..+++..+..-..  +.|+                
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            46888888888888888887788888888       5677777777777776666554  2222                


Q ss_pred             ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh--H
Q 006744          447 ------SLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT--E  518 (632)
Q Consensus       447 ------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~--~  518 (632)
                            ......+...+...|++++|.++|..+...+  |+....-.+...+.+.|++++|+..|+......  .|.  .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~  171 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAG  171 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHH
Confidence                  1223445667888999999999998887644  443355566668889999999999998654321  121  2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPN--EVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...+.
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P  239 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP  239 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            3455688889999999999999999885433243  34667788889999999999999999998764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.61  E-value=6.4e-07  Score=79.86  Aligned_cols=119  Identities=12%  Similarity=0.033  Sum_probs=59.8

Q ss_pred             cccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCC-cCHHHHHHHHHHHHHcCCHHH
Q 006744          391 EERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL----NLE-VNSLSFSIAIQCHVESGDILE  465 (632)
Q Consensus       391 ~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~t~~~ll~~~~~~g~~~~  465 (632)
                      .|++++|.++++.+.........++..+...+...|++++|...+++....    +.. .....+..+...+...|++++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   84 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA   84 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            455566665433333321124556666666777777777777766665441    111 122344455555556666666


Q ss_pred             HHHHHHHHHHC----CCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          466 ACECHNKIIEM----SQVP--SVAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       466 a~~~~~~~~~~----~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      |...+++..+.    +..+  ....+..+...+...|++++|...+++.+
T Consensus        85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            66665555432    1011  12334445555555566666655555543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.59  E-value=1.8e-06  Score=74.02  Aligned_cols=130  Identities=9%  Similarity=-0.044  Sum_probs=90.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|.+.+++..+.... +..++..+..+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            3456667777778888888888888777653 345677777777888888888888888887776433 56677777778


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH--HHHHHHccCCHHHHHHHHHHHH
Q 006744          283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNS--IIGGLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~  335 (632)
                      +...|++++|...|++..+.... +...+..  ++..+.+.|++++|+..+....
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            88888888888888877765433 3344432  3333666777777777776543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.57  E-value=2.1e-06  Score=73.53  Aligned_cols=95  Identities=12%  Similarity=0.105  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLC  493 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~  493 (632)
                      .|..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.. ..+...+..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            34555555555555555555555554432 2233444444444455555555555555444432 122334444444444


Q ss_pred             hcCCHHHHHHHHHHHhh
Q 006744          494 KIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       494 ~~g~~~~A~~~~~~~~~  510 (632)
                      ..|++++|...|+++++
T Consensus        93 ~~~~~~~A~~~~~~a~~  109 (166)
T 1a17_A           93 ALGKFRAALRDYETVVK  109 (166)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHH
Confidence            44555555444444443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.57  E-value=6.9e-07  Score=74.99  Aligned_cols=98  Identities=7%  Similarity=-0.144  Sum_probs=65.4

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...+..+...+.+.|++++|++.|++..+.. +-+...|..+..++...|++++|++.|++..+.... +...|..+..+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~  113 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHH
Confidence            4456666666677777777777777766653 335666666777777777777777777777665443 55666667777


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 006744          283 LVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~  302 (632)
                      |.+.|++++|...|++..+.
T Consensus       114 ~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            77777777777777776664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.56  E-value=1.9e-06  Score=69.95  Aligned_cols=99  Identities=13%  Similarity=-0.047  Sum_probs=65.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744          204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL  283 (632)
Q Consensus       204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  283 (632)
                      ..|......|.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|++.|++.++.+.. +...|..+..+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            345566666777777777777777766553 345666666777777777777777777776665433 556666666777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCC
Q 006744          284 VGEGKVGKACDLLKDLVDSGY  304 (632)
Q Consensus       284 ~~~g~~~~a~~~~~~m~~~g~  304 (632)
                      ...|++++|++.|++..+..+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHCCCHHHHHHHHHHHHHHCc
Confidence            777777777777776666543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.55  E-value=2.2e-06  Score=69.10  Aligned_cols=113  Identities=10%  Similarity=0.063  Sum_probs=70.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...|..+...+...|++++|.++|+++.+.. +.+..++..+...+...|++++|..+++++.+.... +..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            4556666677777777777777777766543 335566666677777777777777777776665332 45566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744          283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL  318 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  318 (632)
                      |...|++++|...|+++.+.... +...+..+...+
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~  121 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK  121 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            67777777777777666655332 334444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.55  E-value=3.3e-05  Score=73.30  Aligned_cols=158  Identities=12%  Similarity=0.001  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC--
Q 006744          185 AEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN----------LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG--  252 (632)
Q Consensus       185 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--  252 (632)
                      ++|+.+++.+...++. +..+|+.--..+...+.          +++++.+++.+.... +-+..+|+.-..++...+  
T Consensus        47 ~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~  124 (331)
T 3dss_A           47 ESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP  124 (331)
T ss_dssp             HHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcc
Confidence            3566667776665432 45556655444443333          567788888777654 446677777766676666  


Q ss_pred             ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc----------
Q 006744          253 RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK-VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV----------  321 (632)
Q Consensus       253 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~----------  321 (632)
                      .+++++++++++.+.... |..+|+.-.-.+...|. ++++++.++.+.+..+. |...|+.....+.+.          
T Consensus       125 ~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~  202 (331)
T 3dss_A          125 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG  202 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------
T ss_pred             cHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccccccc
Confidence            377888888888887655 67777776666677777 57888888888877665 777777665555443          


Q ss_pred             ----CCHHHHHHHHHHHHhCCCCCCHhcHH
Q 006744          322 ----KQFDKAYKLFEVTVQDDLAPDFSTVN  347 (632)
Q Consensus       322 ----g~~~~A~~~~~~m~~~~~~p~~~~~~  347 (632)
                          +.++++++.++........ |...|+
T Consensus       203 ~~~~~~~~eEle~~~~ai~~~P~-d~SaW~  231 (331)
T 3dss_A          203 RLPENVLLKELELVQNAFFTDPN-DQSAWF  231 (331)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCC-CHHHHH
Confidence                3466677777666654332 444554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.51  E-value=2.4e-06  Score=69.91  Aligned_cols=118  Identities=10%  Similarity=-0.087  Sum_probs=76.9

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .+...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence            345667777777777777777777777776653 335666777777777777777777777777665433 556666777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV  321 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~  321 (632)
                      .++.+.|++++|.+.|++..+.... +...+..+...+.+.
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence            7777777777777777776654322 334445555554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.51  E-value=8.5e-07  Score=74.48  Aligned_cols=114  Identities=16%  Similarity=0.029  Sum_probs=72.2

Q ss_pred             HHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 006744          402 EELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS  481 (632)
Q Consensus       402 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~  481 (632)
                      +++....+.+...+..+...+...|++++|...|++..... +.+...+..+..+|...|++++|...|+++++... .+
T Consensus        11 ~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~   88 (148)
T 2vgx_A           11 AMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XE   88 (148)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TC
T ss_pred             HHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CC
Confidence            33333333355566667777777777777777777776643 33555666666677777777777777777766432 24


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT  517 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~  517 (632)
                      ...+..+..+|...|++++|+..|+++++..+..|+
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  124 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE  124 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence            556666777777777777777777776654433343

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.50  E-value=1.6e-06  Score=77.16  Aligned_cols=154  Identities=12%  Similarity=-0.083  Sum_probs=84.0

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-cCHHhHHHHHHHHHhcCChh
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD----LVE-ADVMAYVTLIMGLCKGGRVV  255 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~  255 (632)
                      .|++++|.++++.+... ......++..+...+...|++++|.+.|++..+.    +.. ....++..+...+...|+++
T Consensus         5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            34555555533333221 2234556777777777777777777777766541    111 12345666666777777777


Q ss_pred             HHHHHHHHHHHc----CCc--ccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhhHHHHHHHHHccCCH
Q 006744          256 RGHELFREMKEN----GIL--IDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS----GYR-ADLGIYNSIIGGLCRVKQF  324 (632)
Q Consensus       256 ~a~~~~~~m~~~----~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~g~~  324 (632)
                      +|.+.+++..+.    +-.  .....+..+...+...|++++|...+++....    +.. .-..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            777777665542    111  12334556666666677777776666665532    110 0112344555566666666


Q ss_pred             HHHHHHHHHHH
Q 006744          325 DKAYKLFEVTV  335 (632)
Q Consensus       325 ~~A~~~~~~m~  335 (632)
                      ++|...+++..
T Consensus       164 ~~A~~~~~~al  174 (203)
T 3gw4_A          164 LEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666665543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.50  E-value=2.9e-06  Score=69.06  Aligned_cols=119  Identities=9%  Similarity=-0.006  Sum_probs=75.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      +...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+++..+.... +...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence            34556666667777777777777777766543 335566666677777777777777777776665332 4556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ  323 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  323 (632)
                      .|...|++++|...|++..+.... +...+..+..++.+.|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            677777777777777666665432 44555555555555554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.48  E-value=8.2e-07  Score=74.53  Aligned_cols=99  Identities=17%  Similarity=0.068  Sum_probs=72.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      +...+..+...+.+.|++++|.+.|++..+.... +...|..+..+|...|++++|+..|++..+..+. +...|..+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~  112 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence            3456666777777778888888888887776544 6677777777788888888888888877776544 5566777777


Q ss_pred             HHHccCCHHHHHHHHHHHHhC
Q 006744          317 GLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       317 ~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      +|.+.|++++|+..|++..+.
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            777888888888888777764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.48  E-value=1.9e-05  Score=75.01  Aligned_cols=96  Identities=19%  Similarity=0.060  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC-CH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGL----NLEV--NSLSFSIAIQCHVESGDILEACECHNKIIEMS----QVP-SV  482 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~  482 (632)
                      +|+.+...|...|++++|...|++..+.    +..+  ...++..+...|...|++++|...+++.++..    ... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            4555555555555555555555554311    0001  11345555555555555555555555544321    111 14


Q ss_pred             HhHHHHHHHHHhcCCHHHH-HHHHHHHh
Q 006744          483 AAYNCLTKGLCKIGEIDAA-MMLVRDCL  509 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A-~~~~~~~~  509 (632)
                      .+|..+..+|.+.|++++| ...+++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            4556666666666666666 55555544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.47  E-value=5.5e-06  Score=67.19  Aligned_cols=97  Identities=13%  Similarity=0.055  Sum_probs=75.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744          239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL  318 (632)
Q Consensus       239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  318 (632)
                      ..+......+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|+..|++.++.... +...|..+..+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            45667777888888888888888888776544 6777888888888888888888888888776544 567777888888


Q ss_pred             HccCCHHHHHHHHHHHHhC
Q 006744          319 CRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       319 ~~~g~~~~A~~~~~~m~~~  337 (632)
                      ...|++++|++.|++..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            8888888888888887764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.46  E-value=1.5e-06  Score=75.50  Aligned_cols=127  Identities=9%  Similarity=0.066  Sum_probs=87.5

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHH-HHHcCCH--HH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQC-HVESGDI--LE  465 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~-~~~~g~~--~~  465 (632)
                      ...|++++|...++...+..+.+...|..+...|...|++++|...|++..... +.+...+..+..+ +...|++  ++
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            445677777777777776666677788888888888888888888888877643 2345566666666 6677777  88


Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744          466 ACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT  517 (632)
Q Consensus       466 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~  517 (632)
                      |...++++++... .+...+..+...|...|++++|...|+++++..+..++
T Consensus       100 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  150 (177)
T 2e2e_A          100 TRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN  150 (177)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred             HHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence            8888888777542 24666777777788888888888888887765444333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.45  E-value=7.2e-06  Score=66.00  Aligned_cols=99  Identities=12%  Similarity=0.156  Sum_probs=77.2

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG  317 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  317 (632)
                      ...+..+...+...|++++|.++++++.+.... +..++..+...+.+.|++++|..+|+++.+.... +..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            466777788888888888888888888776432 5677788888888888888888888888776443 56777788888


Q ss_pred             HHccCCHHHHHHHHHHHHhCC
Q 006744          318 LCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      |...|++++|...|+++.+..
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhC
Confidence            888888888888888877653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.45  E-value=3e-06  Score=79.98  Aligned_cols=100  Identities=14%  Similarity=-0.026  Sum_probs=84.4

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744          272 DRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLV  351 (632)
Q Consensus       272 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  351 (632)
                      +...+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+... -+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            4567788888999999999999999999887544 778889999999999999999999999887543 25667788888


Q ss_pred             HHHhcCChhHHHHHHHHHHHCC
Q 006744          352 CCAEMGRMDNFFKLLAQMEKLK  373 (632)
Q Consensus       352 ~~~~~~~~~~a~~~~~~~~~~~  373 (632)
                      ++...|++++|...+.+..+..
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999998877653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.42  E-value=4.5e-06  Score=76.91  Aligned_cols=188  Identities=11%  Similarity=0.006  Sum_probs=99.4

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcCHHhHHHH-------HHHHHhcCChhHHHHHHHHHHHcCCccc---------------
Q 006744          215 AERNLDACLRVWEEMKKDLVEADVMAYVTL-------IMGLCKGGRVVRGHELFREMKENGILID---------------  272 (632)
Q Consensus       215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~~~p~---------------  272 (632)
                      ..++...|.+.|.+..+.. +-....|..+       ...+.+.++..+++..++.-.+  +.|+               
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            4677777777777776653 2344556555       3444444444455444444333  1111               


Q ss_pred             -------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--H
Q 006744          273 -------RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPD--F  343 (632)
Q Consensus       273 -------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~  343 (632)
                             ...+..+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                   1233445566667777777777777666544  222244455556777777777777776443321 110  1


Q ss_pred             hcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCc--cccHHHHHHHHhhhcccHHHHHHHHHHHHhCC
Q 006744          344 STVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSV--AADLEKFFEFLVGKEERIMMALDVFEELKGKG  408 (632)
Q Consensus       344 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  408 (632)
                      ..+..+..++...|++++|+..|++.......|  ..........++.+.|+.++|..+|+++...+
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            244555566666677777766666665432212  12233333444455555555555555555443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.42  E-value=2.5e-06  Score=74.12  Aligned_cols=120  Identities=8%  Similarity=0.059  Sum_probs=64.5

Q ss_pred             hcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH-HHhcCCH--HH
Q 006744          215 AERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG-LVGEGKV--GK  291 (632)
Q Consensus       215 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~  291 (632)
                      ..|++++|++.|++..+.. +.+...|..+...+...|++++|...|++..+.... +...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence            3455555555555554432 234455555556666666666666666665554322 44455555555 5555665  66


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      |...|+++.+.... +...+..+...|...|++++|...|++..+.
T Consensus       100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            66666666554332 4455555666666666666666666666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.41  E-value=7.7e-06  Score=66.46  Aligned_cols=120  Identities=8%  Similarity=-0.032  Sum_probs=89.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      +...+..+...+...|++++|.+.|++..+.... +...+..+...+...|++++|.+.+++..+.... +...|..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence            4556777788888888888888888888776433 6777888888888888888888888888876443 5677788888


Q ss_pred             HHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744          317 GLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM  359 (632)
Q Consensus       317 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  359 (632)
                      .|.+.|++++|...|++..+.... +...+..+..++...|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhcC
Confidence            888888888888888887765422 455566666666666553

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.39  E-value=1.7e-06  Score=72.54  Aligned_cols=95  Identities=11%  Similarity=-0.001  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC  319 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  319 (632)
                      .+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|+..|++.....+. +...|..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence            3444444455555555555555555444322 4444445555555555555555555555444322 3344444555555


Q ss_pred             ccCCHHHHHHHHHHHHh
Q 006744          320 RVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       320 ~~g~~~~A~~~~~~m~~  336 (632)
                      ..|++++|...|++..+
T Consensus       101 ~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.39  E-value=6.8e-06  Score=67.12  Aligned_cols=118  Identities=10%  Similarity=0.031  Sum_probs=85.2

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006744          236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSII  315 (632)
Q Consensus       236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li  315 (632)
                      .+...+..+...+...|++++|.+.|++..+.... +..++..+..+|...|++++|...+++..+.... +...|..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence            35667777888888888888888888888776433 6777888888888888888888888888876443 567777888


Q ss_pred             HHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhc
Q 006744          316 GGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEM  356 (632)
Q Consensus       316 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  356 (632)
                      ..|.+.|++++|.+.|++..+.... +...+..+..++...
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHh
Confidence            8888888888888888887764321 223344444444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.38  E-value=6e-06  Score=80.10  Aligned_cols=130  Identities=11%  Similarity=-0.048  Sum_probs=92.4

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----------------VMAYVTLIMGLCKGGRVVRGHELFREMK  265 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~  265 (632)
                      +...|..+...|.+.|++++|+..|++..+..  |+                ..+|..+..++.+.|++++|+..+++..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45678888888999999999999999888763  33                3667777777777777777777777777


Q ss_pred             HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH-HHHHHHHH
Q 006744          266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKA-YKLFEVTV  335 (632)
Q Consensus       266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~  335 (632)
                      +.... +...|..+..+|...|++++|...|++..+.... +...+..+..++.+.|++++| ..+|..|.
T Consensus       224 ~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          224 ELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76433 5667777777777777777777777777765443 556666677777777777766 33444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.38  E-value=7.6e-06  Score=79.37  Aligned_cols=129  Identities=14%  Similarity=0.008  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPS--------------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS  514 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  514 (632)
                      .+..+...+.+.|++++|...|++.++......              ...|..+..+|.+.|++++|+..++++++..+ 
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-  227 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-  227 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence            344444444455555555555555444321111              45677788888888888888888888876532 


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006744          515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEA-RKVFTNLR  580 (632)
Q Consensus       515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~  580 (632)
                       .+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.|+.++| .++++.|.
T Consensus       228 -~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          228 -NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             345566777888888888888888888888764 55677888888888888888887 44566654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.37  E-value=0.00033  Score=66.46  Aligned_cols=250  Identities=8%  Similarity=-0.041  Sum_probs=160.0

Q ss_pred             HhcCChh-HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          214 AAERNLD-ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR----------VVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       214 ~~~g~~~-~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      .+.|.++ +|+++++.+...+ +-+..+|+.--.++...+.          +++++.+++.+.....+ +..+|+.-...
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            4556665 8999999999764 2344556654444433332          67888899988887665 77788877777


Q ss_pred             HHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC-HHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCCh
Q 006744          283 LVGEG--KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ-FDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRM  359 (632)
Q Consensus       283 ~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  359 (632)
                      +.+.|  .+++++.+++.+.+.... |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+...+..
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence            77777  488999999999988765 88888888777778887 58899999988877654 666776655554443221


Q ss_pred             hHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----------CCh
Q 006744          360 DNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEI-----------GEV  428 (632)
Q Consensus       360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~  428 (632)
                      ..+-       ..+              -...+.++++.+.+.......+.|..+|+-+-..+.+.           +.+
T Consensus       196 ~~~~-------~~~--------------~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l  254 (331)
T 3dss_A          196 PDSG-------PQG--------------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVL  254 (331)
T ss_dssp             C---------------------------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred             cccc-------ccc--------------ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence            1000       000              01124466777777777777666777777655555554           456


Q ss_pred             hhHHHHHHHHhhCCCCcCH-HHHHHHH---HHHHHcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHH
Q 006744          429 KKALYLFGKMRGLNLEVNS-LSFSIAI---QCHVESGDILEACECHNKIIEMSQVPS-VAAYNCLTKGL  492 (632)
Q Consensus       429 ~~A~~~~~~m~~~~~~p~~-~t~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~  492 (632)
                      +++++.++++.+.  .||. -.+..++   .+....|..+++...+.++++..  |. ..-|.-+...+
T Consensus       255 ~~el~~~~elle~--~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D--p~r~~~y~d~~~~~  319 (331)
T 3dss_A          255 QSELESCKELQEL--EPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC--cchhhHHHHHHHHH
Confidence            7888888888774  4543 1222221   12223567778888888888743  43 33445444443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.31  E-value=5.1e-06  Score=69.09  Aligned_cols=99  Identities=13%  Similarity=0.000  Sum_probs=58.9

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      +...+..+...+.+.|++++|...|++..... +.+...+..+..++...|++++|...|++.++... .+...+..+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~   94 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAE   94 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHH
Confidence            34445555666666666666666666665542 23445555556666666666666666666665432 23455556666


Q ss_pred             HHHhcCCHHHHHHHHHHHhhc
Q 006744          491 GLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      +|...|++++|.+.|+++++.
T Consensus        95 ~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           95 CHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh
Confidence            666666666666666665543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.31  E-value=2.4e-05  Score=62.05  Aligned_cols=99  Identities=13%  Similarity=-0.037  Sum_probs=59.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+.... +...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            3445556666666677777777666665543 234555666666666666666666666666654332 45556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCC
Q 006744          283 LVGEGKVGKACDLLKDLVDSG  303 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g  303 (632)
                      +...|++++|.+.+++..+.+
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHhhHHHHHHHHHHHHHcC
Confidence            666666666666666665543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.3e-05  Score=64.94  Aligned_cols=97  Identities=11%  Similarity=-0.019  Sum_probs=61.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744          204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL  283 (632)
Q Consensus       204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  283 (632)
                      ..|..+...+.+.|++++|++.|++..+.. +.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            345556666667777777777777666543 335566666666666677777777777666665433 455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 006744          284 VGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       284 ~~~g~~~~a~~~~~~m~~~  302 (632)
                      ...|++++|...|++..+.
T Consensus        83 ~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           83 IAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHh
Confidence            6666666666666666554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.29  E-value=2.2e-06  Score=76.19  Aligned_cols=131  Identities=12%  Similarity=-0.034  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C--------------CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744          450 FSIAIQCHVESGDILEACECHNKIIEMSQV-P--------------SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVAS  514 (632)
Q Consensus       450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  514 (632)
                      +..+...+...|++++|...|++.++.... +              ....+..+..+|...|++++|+..++++++... 
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-  119 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-  119 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-
Confidence            344444455555555555555555543211 1              025566667777777777777777777765422 


Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCC
Q 006744          515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEAR-KVFTNLRERK  583 (632)
Q Consensus       515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~  583 (632)
                       .+...|..+..++...|++++|++.|++..+.. +.+..++..+..++...|+.+++. ..++.|...+
T Consensus       120 -~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          120 -NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             -TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             -ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             234455566777777777777777777776653 445666666766666666666555 4455554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.22  E-value=1.9e-05  Score=63.98  Aligned_cols=98  Identities=10%  Similarity=-0.018  Sum_probs=76.6

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG  317 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  317 (632)
                      ...|..+...+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence            345667777788888888888888888776543 6778888888888888888888888888876544 56777788888


Q ss_pred             HHccCCHHHHHHHHHHHHhC
Q 006744          318 LCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~~  337 (632)
                      +...|++++|...|++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            88888888888888877654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.22  E-value=5.5e-05  Score=76.36  Aligned_cols=167  Identities=13%  Similarity=0.001  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHh
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLN-LEVNSL----SFSIAIQCHVESGDILEACECHNKIIE----MSQVPS-VAA  484 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~  484 (632)
                      +..++..|...|++++|.+++..+...- ..++..    +.+.+-..+...|+.+.|..++.....    .+..+. ..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            5667777777777777777777664421 011111    122222233345677777777766653    222222 456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HH
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASGPT-EFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCPPN--EV  554 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~  554 (632)
                      +..+...|...|++++|..+++++....   ...+. ...|..++..|...|++++|..++++....    +.++.  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            6677777788888888888777765321   11222 345666777777788888888877766532    11111  23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      ++..++..+...|++++|.+.|.+..+
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            456666666777888888777766644

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.22  E-value=2.2e-05  Score=67.09  Aligned_cols=105  Identities=14%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      +...|..+...+.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|...|++.++... .+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            44556677777777777777777777776643 33556666777777777777777777777776542 24666777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCCh
Q 006744          491 GLCKIGEIDAAMMLVRDCLGNVASGPT  517 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~  517 (632)
                      +|...|++++|+..|+++++..+..++
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchH
Confidence            777777777777777777765444444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.22  E-value=1.9e-05  Score=70.00  Aligned_cols=124  Identities=11%  Similarity=0.016  Sum_probs=74.5

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-cC--------------HHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE-AD--------------VMAYVTLIMGLCKGGRVVRGHELFREMKEN  267 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  267 (632)
                      ...+..+...+.+.|++++|++.|++..+..-. ++              ...|..+..++...|++++|+..+++..+.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            344666777788889999999999888765311 10              145556666666666666666666666655


Q ss_pred             CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744          268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY  328 (632)
Q Consensus       268 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  328 (632)
                      ... +...+..+..+|...|++++|...|++..+.... +...+..+..++...++.+++.
T Consensus       118 ~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          118 DKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             STT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC--
T ss_pred             Ccc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence            322 4556666666666666666666666666654332 4445555555555555444444

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.21  E-value=1.4e-05  Score=66.31  Aligned_cols=98  Identities=9%  Similarity=-0.115  Sum_probs=69.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|++..+.+.. +...+..+..+
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   95 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHH
Confidence            3445556666777778888887777776653 345666777777777777777777777777776543 55667777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 006744          283 LVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~  302 (632)
                      |...|++++|...|+...+.
T Consensus        96 ~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            77777777777777777654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.20  E-value=3.4e-05  Score=62.56  Aligned_cols=26  Identities=19%  Similarity=0.051  Sum_probs=11.2

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRG  440 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~  440 (632)
                      +..+...+.+.|++++|+..|++..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~   36 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIE   36 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33444444444444444444444433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.19  E-value=7.7e-05  Score=75.26  Aligned_cols=97  Identities=8%  Similarity=-0.038  Sum_probs=49.7

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhC----CCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC-CC-C--
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGL----NLEV-NSLSFSIAIQCHVESGDILEACECHNKIIEM--SQ-VP-S--  481 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~-~p-~--  481 (632)
                      .++..+...|...|++++|..++++....    +-.+ ...++..++..|...|++++|..++++....  .. .| .  
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  215 (434)
T 4b4t_Q          136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV  215 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence            34555666666666666666666554332    1011 1234555555666666666666666555432  11 11 1  


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      ...+..+...+...|++++|...|.+..
T Consensus       216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          216 AELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2334444555556666666666655554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=6.2e-05  Score=62.65  Aligned_cols=100  Identities=12%  Similarity=-0.078  Sum_probs=73.6

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIY  276 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  276 (632)
                      .+...+..+...+...|++++|++.|++..+.  .|+    ...|..+..++...|++++|.+.+++..+.... +...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence            35667777778888888888888888887765  344    566777777777888888888888777765433 56677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          277 GVLIEGLVGEGKVGKACDLLKDLVDSG  303 (632)
Q Consensus       277 ~~li~~~~~~g~~~~a~~~~~~m~~~g  303 (632)
                      ..+..+|...|++++|...|++..+..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            777777777788888888777777653

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.19  E-value=5.8e-05  Score=59.79  Aligned_cols=99  Identities=14%  Similarity=0.061  Sum_probs=75.3

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG  317 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  317 (632)
                      ...+..+...+...|++++|.+.|++..+.... +...+..+..++...|++++|...+++..+.... +...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            456667777788888888888888888776433 6677777888888888888888888888776443 56677777888


Q ss_pred             HHccCCHHHHHHHHHHHHhCC
Q 006744          318 LCRVKQFDKAYKLFEVTVQDD  338 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~~~~  338 (632)
                      +...|++++|...+++..+.+
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHhhHHHHHHHHHHHHHcC
Confidence            888888888888888777643

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.17  E-value=3.2e-05  Score=66.02  Aligned_cols=95  Identities=6%  Similarity=-0.024  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC  319 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  319 (632)
                      .+..+...+...|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.... +...|..+..+|.
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   90 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            3444444444444555555554444443222 3444444555555555555555555555444322 3444555555555


Q ss_pred             ccCCHHHHHHHHHHHHh
Q 006744          320 RVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       320 ~~g~~~~A~~~~~~m~~  336 (632)
                      +.|++++|+..|++..+
T Consensus        91 ~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            55555555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.16  E-value=1.4e-05  Score=67.68  Aligned_cols=99  Identities=14%  Similarity=0.005  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHH
Q 006744          484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP----TEFKYALTILHVCRSGEAEKIIEVLNEMTQE----GCP-PNEV  554 (632)
Q Consensus       484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----g~~-p~~~  554 (632)
                      ++..+...+...|++++|.+.+++.+.......    ....+..+...+...|++++|++.+++..+.    +.. ....
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            344445555555555555555555442211111    1223444555555666666666666555432    111 1134


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      ++..+..++...|++++|.+.+++..+.
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5667777888888888888888777653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.16  E-value=2.4e-05  Score=61.40  Aligned_cols=101  Identities=10%  Similarity=-0.012  Sum_probs=74.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP--NEVICSAI  559 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~l  559 (632)
                      ...+..+...+...|++++|+..|+++++...  .+...|..+...+...|++++|++.+++..+.. +.  +...+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l   82 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAK   82 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHH
Confidence            44566677777788888888888887776532  234556667777778888888888888887763 44  57788888


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 006744          560 ISGMCKH-GTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       560 ~~~~~~~-g~~~~A~~~~~~m~~~~~~  585 (632)
                      ..++.+. |++++|.+.+++..+.+..
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           83 ADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            8888888 8888888888888776643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.15  E-value=4.7e-05  Score=62.51  Aligned_cols=96  Identities=7%  Similarity=-0.058  Sum_probs=43.0

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGG  317 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~  317 (632)
                      ...|..+...+...|++++|...|++..+.... +...|..+..++...|++++|...+++..+.... +...|..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence            334444444444444444444444444443222 3344444444444444444444444444443322 33444444444


Q ss_pred             HHccCCHHHHHHHHHHHH
Q 006744          318 LCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~  335 (632)
                      |...|++++|+..|++..
T Consensus        87 ~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            444555555554444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.14  E-value=4.8e-05  Score=61.65  Aligned_cols=98  Identities=6%  Similarity=0.028  Sum_probs=62.0

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc--cc----HHhHH
Q 006744          204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL--ID----RAIYG  277 (632)
Q Consensus       204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~  277 (632)
                      .++..+...+.+.|++++|++.|++..+.. +-+...|..+..+|...|++++|++.+++.++.+..  .+    ..+|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            446666777777777777777777776653 335666777777777777777777777776653211  01    12455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      .+..++...|++++|++.|++....
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~  112 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSE  112 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5556666666666666666665543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.12  E-value=5.5e-05  Score=62.08  Aligned_cols=100  Identities=10%  Similarity=-0.083  Sum_probs=88.7

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .+...|..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...+++..+.+.. +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence            467888999999999999999999999988764 446788999999999999999999999999987644 678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 006744          281 EGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      .+|...|++++|...|++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999998864

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.11  E-value=3.7e-05  Score=60.31  Aligned_cols=100  Identities=16%  Similarity=0.114  Sum_probs=51.7

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHhHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV-PSVAAYNCLT  489 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li  489 (632)
                      +...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... .+...+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            33445555555666666666666666555432 223444455555555555555555555555543211 0344455555


Q ss_pred             HHHHhc-CCHHHHHHHHHHHhhc
Q 006744          490 KGLCKI-GEIDAAMMLVRDCLGN  511 (632)
Q Consensus       490 ~~~~~~-g~~~~A~~~~~~~~~~  511 (632)
                      .++... |++++|.+.+++++..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            555555 5555555555555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.09  E-value=3e-05  Score=62.90  Aligned_cols=98  Identities=13%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc--cc----HHhHH
Q 006744          204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL--ID----RAIYG  277 (632)
Q Consensus       204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~----~~~~~  277 (632)
                      ..|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+....  ++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            445666666777777777777777766543 335566666667777777777777777766654221  11    44556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      .+..+|...|++++|.+.|++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            6666666666666666666666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.08  E-value=2.4e-05  Score=66.22  Aligned_cols=134  Identities=10%  Similarity=0.040  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHhcCChhhHHHHHHHHhhCCCC-cC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-C----CH
Q 006744          413 PIYNILMGALLEIGEVKKALYLFGKMRGLNLE-VN----SLSFSIAIQCHVESGDILEACECHNKIIEMSQV-P----SV  482 (632)
Q Consensus       413 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-p----~~  482 (632)
                      .++..+...+...|++++|...+++..+.... .+    ..++..+...+...|++++|...+++..+.... .    ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            35666777777777777777777766543100 11    135666677777788888888887776643111 1    14


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGNV---ASG-PTEFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      ..+..+...+...|++++|.+.+++.++..   +.. .....+..+...+...|++++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            456677778888888888888888776431   111 1134466677778888999999988887664

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.06  E-value=3.7e-05  Score=61.67  Aligned_cols=91  Identities=12%  Similarity=0.001  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC
Q 006744          208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG  287 (632)
Q Consensus       208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  287 (632)
                      .+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.... +...+..+..+|...|
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            33344444445555555444444432 223444444444444444444444444444443322 3334444444444444


Q ss_pred             CHHHHHHHHHHHH
Q 006744          288 KVGKACDLLKDLV  300 (632)
Q Consensus       288 ~~~~a~~~~~~m~  300 (632)
                      ++++|+..|++..
T Consensus       100 ~~~~A~~~~~~al  112 (121)
T 1hxi_A          100 NANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            4444444444444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.05  E-value=3.4e-05  Score=61.88  Aligned_cols=96  Identities=9%  Similarity=-0.021  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC  319 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~  319 (632)
                      .+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++..+..+. +...+..+..+|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence            3455667778888888888888888886544 6778888888888888888888888888887554 6677888888888


Q ss_pred             ccCCHHHHHHHHHHHHhC
Q 006744          320 RVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       320 ~~g~~~~A~~~~~~m~~~  337 (632)
                      +.|++++|+..|++..+.
T Consensus        97 ~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC-
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            888888888888887754

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=9.1e-05  Score=61.59  Aligned_cols=99  Identities=14%  Similarity=0.044  Sum_probs=64.6

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCCh----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006744          481 SVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPT----EFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVIC  556 (632)
Q Consensus       481 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  556 (632)
                      +...+..+...+...|++++|+..|++.++.   .|+    ...|..+...+...|++++|+..+++..+.. +.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            3455566666666667777777777666643   233    4455556666667777777777777766653 3456667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          557 SAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       557 ~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      ..+..++...|++++|.+.|++..+..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            777777777777777777777777654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.05  E-value=4.1e-05  Score=62.05  Aligned_cols=99  Identities=12%  Similarity=0.143  Sum_probs=73.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HhhH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYR--AD----LGIY  311 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~----~~~~  311 (632)
                      ...+..+...+...|++++|...|++..+.... +...+..+...|...|++++|...+++.......  ++    ..+|
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            345667777888888888888888888776433 6677778888888888888888888887765321  11    5567


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          312 NSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       312 ~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      ..+...|.+.|++++|.+.|++..+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            77778888888888888888877764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.99  E-value=2.1e-05  Score=62.72  Aligned_cols=96  Identities=11%  Similarity=0.031  Sum_probs=54.4

Q ss_pred             cCChhhHHHHHHHHhhCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744          425 IGEVKKALYLFGKMRGLN--LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM  502 (632)
Q Consensus       425 ~g~~~~A~~~~~~m~~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  502 (632)
                      .|++++|+..|++..+.+  -+-+...+..+..+|...|++++|...|++.++... -+...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHH
Confidence            456666666676666542  122334555566666666777777777666666432 23556666666677777777777


Q ss_pred             HHHHHHhhcCCCCChHHHH
Q 006744          503 MLVRDCLGNVASGPTEFKY  521 (632)
Q Consensus       503 ~~~~~~~~~~~~~p~~~~~  521 (632)
                      ..+++.+...+..|+...|
T Consensus        82 ~~~~~al~~~p~~~~~~~~  100 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSY  100 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHT
T ss_pred             HHHHHHHHhCCCcHHHHHH
Confidence            7777666554444443333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.95  E-value=0.00027  Score=57.12  Aligned_cols=93  Identities=14%  Similarity=0.015  Sum_probs=53.7

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCcCH---HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCccc---HHhHHHHHH
Q 006744          208 AMIRVLAAERNLDACLRVWEEMKKDLVEADV---MAYVTLIMGLCKGGRVVRGHELFREMKENGILID---RAIYGVLIE  281 (632)
Q Consensus       208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~  281 (632)
                      .+...+...|++++|.+.|++..+.. +.+.   ..+..+..++...|++++|...|+++.+.... +   ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence            34445566666666666666665542 1122   35555566666666666666666666654322 2   444555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 006744          282 GLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      ++.+.|++++|...|+++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666666666666666666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.91  E-value=2.7e-05  Score=79.38  Aligned_cols=122  Identities=10%  Similarity=-0.029  Sum_probs=88.6

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC
Q 006744          208 AMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG  287 (632)
Q Consensus       208 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  287 (632)
                      .+...+.+.|++++|++.|++..+.. +.+..+|..+..++.+.|++++|++.+++..+.... +...|..+..+|...|
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   88 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            33445667888888888888877753 345778888888888888888888888888887543 6778888888888888


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHccCCHHHHHHHHH
Q 006744          288 KVGKACDLLKDLVDSGYRADLGIYNSIIGG--LCRVKQFDKAYKLFE  332 (632)
Q Consensus       288 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~  332 (632)
                      ++++|++.|++..+.... +...+..+..+  +.+.|++++|++.++
T Consensus        89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            888888888888876443 34455555555  778888888888887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.91  E-value=0.00033  Score=72.75  Aligned_cols=170  Identities=11%  Similarity=-0.032  Sum_probs=125.6

Q ss_pred             HHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-
Q 006744          184 IAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERN----------LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-  252 (632)
Q Consensus       184 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-  252 (632)
                      .++|++.++++.+.++. +..+|+.--..+...|+          ++++++.++.+.+.. +-+..+|+.-..++.+.+ 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            35667777777765433 56678777777777776          889999999988765 457778888888888888 


Q ss_pred             -ChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---------
Q 006744          253 -RVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG-KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRV---------  321 (632)
Q Consensus       253 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~---------  321 (632)
                       +++++++.++++.+.... +..+|+.-...+.+.| ..+++++.++++.+..+. |..+|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence             669999999999988766 7888888877888888 888999999998887765 778888777666553         


Q ss_pred             -----CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCC
Q 006744          322 -----KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGR  358 (632)
Q Consensus       322 -----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~  358 (632)
                           +.++++++++++....... |...|...-..+.+.+.
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence                 4567788888777765432 45566655555555444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.89  E-value=0.00013  Score=74.05  Aligned_cols=123  Identities=9%  Similarity=-0.064  Sum_probs=67.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----------------HHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----------------VMAYVTLIMGLCKGGRVVRGHELFREMK  265 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~  265 (632)
                      ....|..+...|.+.|++++|+..|++..+..  |+                ...|..+..+|.+.|++++|+..+++..
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  344 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKAL  344 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            34567778888888999999999998877642  22                2445555555555555555555555555


Q ss_pred             HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006744          266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAY  328 (632)
Q Consensus       266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~  328 (632)
                      +.... +...|..+..+|...|++++|+..|++..+.... +...+..+..++.+.++.+++.
T Consensus       345 ~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          345 GLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            54322 3444555555555555555555555555544322 3334444444444444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.89  E-value=0.00064  Score=54.78  Aligned_cols=26  Identities=12%  Similarity=0.089  Sum_probs=10.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          556 CSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       556 ~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      +..+..++...|++++|.+.|+++.+
T Consensus        79 ~~~la~~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           79 LLKLGLSQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33333333344444444444444333

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.89  E-value=0.00019  Score=59.43  Aligned_cols=95  Identities=14%  Similarity=0.038  Sum_probs=62.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCC----------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CC
Q 006744          487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGP----------TEFKYALTILHVCRSGEAEKIIEVLNEMTQE-------GC  549 (632)
Q Consensus       487 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-------g~  549 (632)
                      .....+.+.|++++|+..|++.++..+..|          +...|..+..++.+.|++++|+..+++.++.       . 
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-   94 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-   94 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-
Confidence            344445555555555555555554322211          1225666666677777777777777766664       3 


Q ss_pred             CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          550 PPNEVIC----SAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       550 ~p~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      +.+...|    .....++...|++++|+..|++.++.
T Consensus        95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3345577    88899999999999999999999775

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.88  E-value=0.00012  Score=71.80  Aligned_cols=120  Identities=10%  Similarity=0.029  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------C-CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDL--------------V-EADVMAYVTLIMGLCKGGRVVRGHELFREMKENGI  269 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  269 (632)
                      .|..+...+.+.|++++|++.|++..+.-              . +.+...|..+..+|.+.|++++|++.+++..+...
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            46677778888899999998888876510              0 11233444445555555555555555555554332


Q ss_pred             cccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 006744          270 LIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDK  326 (632)
Q Consensus       270 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~  326 (632)
                      . +...|..+..+|...|++++|++.|++..+.... +...+..+...+.+.++.++
T Consensus       305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            2 3444445555555555555555555555443222 33344444444444443333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.84  E-value=0.00027  Score=71.59  Aligned_cols=153  Identities=15%  Similarity=0.055  Sum_probs=110.5

Q ss_pred             CChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------------HHhHHHHHHH
Q 006744          426 GEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPS--------------VAAYNCLTKG  491 (632)
Q Consensus       426 g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~--------------~~~~~~li~~  491 (632)
                      +++++|...|+...... .-....+..+...+.+.|++++|...|+++++......              ...|..+..+
T Consensus       248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~  326 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC  326 (457)
T ss_dssp             EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence            34555555554332211 12345677888889999999999999999988543221              5788889999


Q ss_pred             HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006744          492 LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEE  571 (632)
Q Consensus       492 ~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~  571 (632)
                      |.+.|++++|+..++++++...  .+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.|+.++
T Consensus       327 ~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          327 YLKLREYTKAVECCDKALGLDS--ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987643  345667778899999999999999999999874 4566788888888888888887


Q ss_pred             HHH-HHHHHHHC
Q 006744          572 ARK-VFTNLRER  582 (632)
Q Consensus       572 A~~-~~~~m~~~  582 (632)
                      |.+ +++.|..+
T Consensus       404 a~~~~~~~~f~k  415 (457)
T 1kt0_A          404 RDRRIYANMFKK  415 (457)
T ss_dssp             HHHHHHHHC---
T ss_pred             HHHHHHHHHHhh
Confidence            764 45555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.84  E-value=5.6e-05  Score=77.04  Aligned_cols=118  Identities=12%  Similarity=-0.029  Sum_probs=91.3

Q ss_pred             HhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 006744          387 LVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEA  466 (632)
Q Consensus       387 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a  466 (632)
                      .+.+.|++++|.+.|++..+..+.+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..+|...|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            35677888888888888888777788899999999999999999999999998864 44567788888899999999999


Q ss_pred             HHHHHHHHHCCCCCCHHhHHHHHHH--HHhcCCHHHHHHHHH
Q 006744          467 CECHNKIIEMSQVPSVAAYNCLTKG--LCKIGEIDAAMMLVR  506 (632)
Q Consensus       467 ~~~~~~~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~  506 (632)
                      .+.|+++.+.... +...+..+..+  +.+.|++++|++.++
T Consensus        94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999998876422 34455555555  788899999999988

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.83  E-value=0.00082  Score=69.79  Aligned_cols=191  Identities=5%  Similarity=-0.083  Sum_probs=132.1

Q ss_pred             hcCC-hhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC----------hhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744          215 AERN-LDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR----------VVRGHELFREMKENGILIDRAIYGVLIEGL  283 (632)
Q Consensus       215 ~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  283 (632)
                      +.|. .++|++.++++.+.+ +-+..+|+.--.++...|+          ++++++.++.+.+...+ +..+|+.-.-.+
T Consensus        40 ~~~~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l  117 (567)
T 1dce_A           40 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL  117 (567)
T ss_dssp             HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            3444 457788888888764 3345667766666666666          78888888888887665 777787777777


Q ss_pred             HhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChh
Q 006744          284 VGEG--KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK-QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD  360 (632)
Q Consensus       284 ~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  360 (632)
                      .+.|  +++++++.++++.+.... +..+|+.-...+.+.| .++++++.++++.+.... |...|+.....+.+.+...
T Consensus       118 ~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          118 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCC
T ss_pred             HHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccc
Confidence            7888  668888888888887665 7778887777777777 788888888887766544 6666666555554432210


Q ss_pred             HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 006744          361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK  430 (632)
Q Consensus       361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  430 (632)
                      .+          +..  .         -...+.++++.+.+.+....++.+..+|+.+-..+.+.++.++
T Consensus       196 ~~----------~~~--~---------~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          196 DS----------GPQ--G---------RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CS----------SSC--C---------SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cc----------ccc--c---------cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            00          000  0         0112567888888888888877788899998888888777544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.82  E-value=5e-05  Score=60.48  Aligned_cols=84  Identities=13%  Similarity=0.027  Sum_probs=40.7

Q ss_pred             CChhHHHHHHHHHHHcC--CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH
Q 006744          252 GRVVRGHELFREMKENG--ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYK  329 (632)
Q Consensus       252 g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~  329 (632)
                      |++++|+..|++..+.+  -+-+..++..+..+|...|++++|+..|++..+..+. +..++..+..++.+.|++++|+.
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHHH
Confidence            44555555555555432  1113344555555555555555555555555554333 34445555555555555555555


Q ss_pred             HHHHHHh
Q 006744          330 LFEVTVQ  336 (632)
Q Consensus       330 ~~~~m~~  336 (632)
                      .|++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.80  E-value=0.00014  Score=61.89  Aligned_cols=99  Identities=12%  Similarity=0.068  Sum_probs=60.7

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhC-------CC----------CcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKD-------LV----------EADVMAYVTLIMGLCKGGRVVRGHELFREMK  265 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  265 (632)
                      ...+......+.+.|++++|++.|++..+.       .-          +.+...|..+..+|.+.|++++|+..+++..
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345667777788888888888888877653       00          1122455555566666666666666666665


Q ss_pred             HcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          266 ENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       266 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      +.+.. +...|..+..+|...|++++|...|++....
T Consensus        91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            54332 4555666666666666666666666665554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.77  E-value=0.00016  Score=73.19  Aligned_cols=133  Identities=11%  Similarity=0.027  Sum_probs=70.1

Q ss_pred             HHHhcCChhhHHHHHHHHhhCC---CCc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHhHH
Q 006744          421 ALLEIGEVKKALYLFGKMRGLN---LEV----NSLSFSIAIQCHVESGDILEACECHNKIIEM-----SQ-VPS-VAAYN  486 (632)
Q Consensus       421 ~~~~~g~~~~A~~~~~~m~~~~---~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~~~  486 (632)
                      .+...|++++|+.++++..+..   +.+    ...+++.+..+|...|++++|..++++.++.     |. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3445677777776666554321   111    1234555666666666666666666555431     11 122 34455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006744          487 CLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH  566 (632)
Q Consensus       487 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  566 (632)
                      .|...|...|++++|+.++++++                             ++++...-.+.+....+...+..++...
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al-----------------------------~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  448 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAY-----------------------------AILLVTHGPSHPITKDLEAMRMQTEMEL  448 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-----------------------------HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-----------------------------HHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            66666666666666666665432                             2222221111111223445555666677


Q ss_pred             CCHHHHHHHHHHHHHC
Q 006744          567 GTLEEARKVFTNLRER  582 (632)
Q Consensus       567 g~~~~A~~~~~~m~~~  582 (632)
                      |.+++|..++..+++.
T Consensus       449 ~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          449 RMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777777664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.77  E-value=0.00032  Score=59.54  Aligned_cols=99  Identities=9%  Similarity=0.032  Sum_probs=75.3

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC---------cccHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKEN--------GI---------LIDRAIYGVLIEGLVGEGKVGKACDLLKDLV  300 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  300 (632)
                      ...+......+.+.|++++|+..|.+..+.        ..         ..+..+|..+..+|.+.|++++|+..+++.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            456777888889999999999999988764        10         1134567777888888888888888888887


Q ss_pred             HCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          301 DSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       301 ~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      +.... +...|..+..+|...|++++|...|++..+.
T Consensus        91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            76543 6677777888888888888888888877764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.76  E-value=8.3e-05  Score=72.05  Aligned_cols=149  Identities=11%  Similarity=-0.049  Sum_probs=72.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHH
Q 006744          204 FAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGL  283 (632)
Q Consensus       204 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  283 (632)
                      ..|..+...+.+.|++++|+..|++..+.  .|+...       +...++.+++...+          ....|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence            44666777788889999999999887764  243321       11223333332221          112566677777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHH-HHhcCChhHH
Q 006744          284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVC-CAEMGRMDNF  362 (632)
Q Consensus       284 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a  362 (632)
                      .+.|++++|+..+++..+.... +...|..+..+|...|++++|+..|++..+.... +...+..+... ....+..+.+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777765433 5667777777777777777777777776543211 22233333333 2234455666


Q ss_pred             HHHHHHHHHCC
Q 006744          363 FKLLAQMEKLK  373 (632)
Q Consensus       363 ~~~~~~~~~~~  373 (632)
                      ...|..+....
T Consensus       319 ~~~~~~~l~~~  329 (338)
T 2if4_A          319 KEMYKGIFKGK  329 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHhhCCC
Confidence            66776665543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.74  E-value=0.0003  Score=68.92  Aligned_cols=98  Identities=7%  Similarity=-0.074  Sum_probs=65.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHHc---------------CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          239 MAYVTLIMGLCKGGRVVRGHELFREMKEN---------------GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSG  303 (632)
Q Consensus       239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  303 (632)
                      ..+..+...+.+.|++++|++.|++..+.               --..+..+|..+..+|.+.|++++|++.+++..+..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  303 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID  303 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence            34667788889999999999999988762               011134556666666666777777777776666654


Q ss_pred             CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          304 YRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       304 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      .. +...|..+..+|...|++++|+..|++..+.
T Consensus       304 p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          304 PS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            32 4556666666666666676666666666554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.67  E-value=0.00057  Score=56.62  Aligned_cols=61  Identities=16%  Similarity=0.068  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHhhH----HHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          275 IYGVLIEGLVGEGKVGKACDLLKDLVDS-------GYRADLGIY----NSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      .|..+..++.+.|++++|+..+++.++.       ... +...|    .....++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5666666666666666666666666553       322 34455    6666777777777777777776653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.66  E-value=0.0017  Score=53.21  Aligned_cols=112  Identities=9%  Similarity=-0.085  Sum_probs=71.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHH
Q 006744          461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR----SGEAEK  536 (632)
Q Consensus       461 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~  536 (632)
                      ++.++|.++|++..+.| .++..    |...|...+.+++|++.|++..+.    -+...+..|...|..    .++.++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            34566666666666655 22222    555555666666677777766553    233444456666665    567777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006744          537 IIEVLNEMTQEGCPPNEVICSAIISGMCK----HGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       537 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  584 (632)
                      |+++|++..+.|   +...+..|...|..    .++.++|.++|++..+.|.
T Consensus        80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            777777777765   56666677777777    6777788888777777764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.60  E-value=0.00033  Score=70.94  Aligned_cols=89  Identities=10%  Similarity=0.052  Sum_probs=57.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHC-----CCC-C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-----CC-CCC-HhcHH
Q 006744          282 GLVGEGKVGKACDLLKDLVDS-----GYR-A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-----DL-APD-FSTVN  347 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~-----g~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~  347 (632)
                      .+...|++++|+.++++..+.     |.. | ...+++.|...|...|++++|+.++++.++.     |. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355678888888888776642     211 1 2346778888888888888888888776532     21 122 24566


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHH
Q 006744          348 PLLVCCAEMGRMDNFFKLLAQME  370 (632)
Q Consensus       348 ~ll~~~~~~~~~~~a~~~~~~~~  370 (632)
                      .|...|...|++++|+.++++..
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH
Confidence            77777777777777777766543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.54  E-value=0.0029  Score=51.80  Aligned_cols=86  Identities=13%  Similarity=0.035  Sum_probs=37.5

Q ss_pred             HHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHH--
Q 006744          386 FLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVE--  459 (632)
Q Consensus       386 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~--  459 (632)
                      .+|...+.+++|.+.|++..+.+  +...+..|...|..    .+++++|+..|++..+.|   +...+..+...|..  
T Consensus        33 ~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           33 LVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGK  107 (138)
T ss_dssp             HHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred             HHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCC
Confidence            33333344444444444444433  34444444444444    444455555554444433   23333333334443  


Q ss_pred             --cCCHHHHHHHHHHHHHC
Q 006744          460 --SGDILEACECHNKIIEM  476 (632)
Q Consensus       460 --~g~~~~a~~~~~~~~~~  476 (632)
                        .++.++|.++|++..+.
T Consensus       108 g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A          108 GVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             SSCCCHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHC
Confidence              34444444444444443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.51  E-value=0.00036  Score=67.52  Aligned_cols=151  Identities=11%  Similarity=0.029  Sum_probs=85.5

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744          239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL  318 (632)
Q Consensus       239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  318 (632)
                      ..+..+...+.+.|++++|...|++..+..  |+...       +...|+.+++...+          ....|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHHH
Confidence            456677788888999999999999887753  33221       22334444443322          123788899999


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHH-hhhcccHHHH
Q 006744          319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFL-VGKEERIMMA  397 (632)
Q Consensus       319 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a  397 (632)
                      .+.|++++|+..+++..+... -+...|..+..+|...|++++|...|+++.+.... +......+..+ ....+..+.+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a  318 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ  318 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987642 36678888999999999999999999998776543 33444444444 3456777888


Q ss_pred             HHHHHHHHhCCCC
Q 006744          398 LDVFEELKGKGYS  410 (632)
Q Consensus       398 ~~~~~~~~~~~~~  410 (632)
                      ..+|..+....+.
T Consensus       319 ~~~~~~~l~~~p~  331 (338)
T 2if4_A          319 KEMYKGIFKGKDE  331 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHhhCCCCC
Confidence            8899888766543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.39  E-value=0.00013  Score=57.21  Aligned_cols=64  Identities=9%  Similarity=0.084  Sum_probs=37.4

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN  267 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  267 (632)
                      ...|..+...+...|++++|++.|++..+.. +.+...|..+..++...|++++|++.+++..+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3445555566666666666666666655542 234555555666666666666666666666554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.37  E-value=0.0012  Score=51.92  Aligned_cols=77  Identities=13%  Similarity=-0.025  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006744          257 GHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       257 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  335 (632)
                      |++.|++..+.... +...+..+...|...|++++|+..|++..+.... +...|..+..+|...|++++|...|++..
T Consensus         4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444443222 3444444444555555555555555554443322 33444445555555555555555554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.37  E-value=0.00025  Score=55.39  Aligned_cols=64  Identities=11%  Similarity=0.014  Sum_probs=38.3

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          238 VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       238 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      ...+..+...+...|++++|.+.|++..+.... +...+..+..+|.+.|++++|++.|++..+.
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            344555566666666666666666666654332 4555666666666666666666666666654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.35  E-value=0.0014  Score=51.64  Aligned_cols=78  Identities=13%  Similarity=0.081  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          397 ALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       397 a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      |...|++..+..+.+...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4455555555555566666667777777777777777776666543 23344555666666666666666666666654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.34  E-value=0.0019  Score=47.94  Aligned_cols=79  Identities=11%  Similarity=0.037  Sum_probs=43.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      ...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3445555566666666666666666655442 224455555566666666666666666665554322 34444444444


Q ss_pred             H
Q 006744          283 L  283 (632)
Q Consensus       283 ~  283 (632)
                      +
T Consensus        87 ~   87 (91)
T 1na3_A           87 K   87 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.31  E-value=0.0023  Score=47.53  Aligned_cols=78  Identities=12%  Similarity=0.066  Sum_probs=42.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744          239 MAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGL  318 (632)
Q Consensus       239 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  318 (632)
                      ..+..+...+...|++++|.+.|++..+.... +..++..+..++.+.|++++|...|++..+.... +...+..+...+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence            44555555566666666666666666554322 4455555556666666666666666665554322 334444444443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.22  E-value=0.001  Score=54.98  Aligned_cols=86  Identities=9%  Similarity=-0.019  Sum_probs=55.1

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChh----------hHHHHHHHHhhCCCCcCHHHHHHHHHHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVK----------KALYLFGKMRGLNLEVNSLSFSIAIQCHV  458 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----------~A~~~~~~m~~~~~~p~~~t~~~ll~~~~  458 (632)
                      .+.+.+++|.+.++...+.++.+...|+.+..++...++++          +|+..|++..+.. +-+...|..+..+|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            34566788888888888887778888888888888877654          5666666655532 223345555555555


Q ss_pred             HcC-----------CHHHHHHHHHHHHH
Q 006744          459 ESG-----------DILEACECHNKIIE  475 (632)
Q Consensus       459 ~~g-----------~~~~a~~~~~~~~~  475 (632)
                      ..|           ++++|.+.|++.++
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~  119 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVD  119 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence            443           55555555555555

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.21  E-value=0.00072  Score=55.88  Aligned_cols=109  Identities=13%  Similarity=-0.002  Sum_probs=55.5

Q ss_pred             HhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHH
Q 006744          214 AAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKAC  293 (632)
Q Consensus       214 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  293 (632)
                      .+.+.+++|++.++...+.. +.+...|..+..++...++++.+...++                         .+++|+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi   66 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAI   66 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHH
Confidence            34455566666666655543 3355555555555555554431111110                         134555


Q ss_pred             HHHHHHHHCCCCCCHhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCCCHhcHHHHHH
Q 006744          294 DLLKDLVDSGYRADLGIYNSIIGGLCRV-----------KQFDKAYKLFEVTVQDDLAPDFSTVNPLLV  351 (632)
Q Consensus       294 ~~~~~m~~~g~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~  351 (632)
                      ..|++.++..+. +..+|..+..+|...           |++++|++.|++..+.  .|+...|...+.
T Consensus        67 ~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           67 TKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            555555554433 444555555555544           3677777777766653  455444444433

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.13  E-value=0.091  Score=57.49  Aligned_cols=129  Identities=13%  Similarity=0.051  Sum_probs=83.8

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006744          347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG  426 (632)
Q Consensus       347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  426 (632)
                      ..++..+.+.|..+.|.++.+..            ..-.......|++++|.++.+.+     .+...|..+...+.+.|
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~  695 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRF  695 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcC
Confidence            45555666666666666554211            01122345668888888775433     36778999999999999


Q ss_pred             ChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006744          427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVR  506 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  506 (632)
                      +++.|.+.|.++..         |..+...+...|+.+...++-+.....|.      ++....+|.+.|++++|++++.
T Consensus       696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999988754         44555556667777776666665555442      3445555667777777777765


Q ss_pred             H
Q 006744          507 D  507 (632)
Q Consensus       507 ~  507 (632)
                      +
T Consensus       761 ~  761 (814)
T 3mkq_A          761 K  761 (814)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.02  E-value=0.047  Score=42.69  Aligned_cols=135  Identities=12%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHh---cHHHHHHHHHhcCChhH
Q 006744          285 GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFS---TVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~  361 (632)
                      -.|.+++..++..+..+.   -+..-||.+|--....-+-+-..++++.+-+.   .|..   -...++.+|.+.+..  
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis~C~NlKrVi~C~~~~n~~--   90 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLDKCQNLKSVVECGVINNTL--   90 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGGGCSCTHHHHHHHHHTTCC--
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCcHhhhcHHHHHHHHHHhcch--
Confidence            356666666666666554   24445555555555555555555555554331   1111   123445555544432  


Q ss_pred             HHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744          362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL  441 (632)
Q Consensus       362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  441 (632)
                                      .......+..+...|+-++..+++..+.....+++...-.+..+|.+.|+..+|.+++.+..+.
T Consensus        91 ----------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           91 ----------------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             ----------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ----------------HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence                            1222222333334444444444444433333334444444555555555555555555555554


Q ss_pred             CC
Q 006744          442 NL  443 (632)
Q Consensus       442 ~~  443 (632)
                      |+
T Consensus       155 G~  156 (172)
T 1wy6_A          155 GE  156 (172)
T ss_dssp             TC
T ss_pred             hh
Confidence            43

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.00  E-value=0.0028  Score=48.36  Aligned_cols=61  Identities=16%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          448 LSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       448 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      ..+..+..++...|++++|...|+++++... .+...|..+..+|...|++++|++.|++.+
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444455555555555555555554331 123445555555555555555555555543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.99  E-value=0.0035  Score=47.84  Aligned_cols=62  Identities=11%  Similarity=-0.022  Sum_probs=31.0

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMT  545 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  545 (632)
                      ...+..+..+|...|++++|+..|+++++..+..+  ..|..+..+|...|++++|++.+++..
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYV--GTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44455555555555555555555555554432222  234444555555555555555555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.78  E-value=0.0084  Score=59.55  Aligned_cols=50  Identities=8%  Similarity=-0.145  Sum_probs=35.4

Q ss_pred             cCCHHHHHHHHHHHHHC---CCC---CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          460 SGDILEACECHNKIIEM---SQV---PS-VAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       460 ~g~~~~a~~~~~~~~~~---~~~---p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      .|++++|..++++.++.   -+-   |+ ..+++.|..+|...|++++|+.++++++
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL  367 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII  367 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            46777787777776642   111   22 4667888888888999999988887754

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.64  E-value=0.015  Score=57.86  Aligned_cols=54  Identities=9%  Similarity=0.097  Sum_probs=32.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCC---CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          456 CHVESGDILEACECHNKIIEMS---QVPS----VAAYNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       456 ~~~~~g~~~~a~~~~~~~~~~~---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      .+...|++++|..++++.++..   +.++    ..+++.|..+|...|++++|+.++++++
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L  356 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM  356 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            3445666677777766666431   1111    4456667777777777777777776543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.59  E-value=0.13  Score=56.28  Aligned_cols=123  Identities=12%  Similarity=0.110  Sum_probs=71.8

Q ss_pred             HHhcCChhHHHH-HHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744          213 LAAERNLDACLR-VWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       213 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  291 (632)
                      ....+++++|.+ ++..+      ++......++..+.+.|..++|+++.+.-.            .-.......|++++
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence            345677777766 44211      112223666666777777777776653211            11234456778888


Q ss_pred             HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          292 ACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       292 a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      |.++.+.+      .+...|..|...+.+.|+++.|++.|..+..         |..+...+...|+.+...++.+.
T Consensus       671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~  732 (814)
T 3mkq_A          671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD  732 (814)
T ss_dssp             HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence            87775433      2567788888888888888888888876642         34445555555655554444333

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.55  E-value=0.092  Score=50.03  Aligned_cols=69  Identities=9%  Similarity=0.013  Sum_probs=55.2

Q ss_pred             CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          515 GPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      ..+...|..+...+...|++++|+..++++...+  |+...|..+...+.-.|++++|.+.+++....+..
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~  342 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG  342 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            4566777777777777788888888888888875  77777778888888889999999888888887653

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.49  E-value=0.067  Score=50.94  Aligned_cols=63  Identities=10%  Similarity=-0.006  Sum_probs=28.6

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          482 VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       482 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      ..+|..+...+...|++++|+..+++++...   |+...|..+...+...|++++|++.++++...
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            4444444444444445555555554444331   34444444444444445555555555444443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.48  E-value=0.015  Score=43.85  Aligned_cols=56  Identities=18%  Similarity=0.237  Sum_probs=30.4

Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          527 HVCRSGEAEKIIEVLNEMTQEGCPPNEV-ICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       527 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      .+...|++++|++.++++.+.. +.+.. .|..+..+|...|++++|.+.|++..+.+
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3444555555555555555442 33444 55555555666666666666666665554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.38  E-value=0.064  Score=39.91  Aligned_cols=68  Identities=18%  Similarity=0.094  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          517 TEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       517 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      +...+..+..++...++   .++|..++++..+.. +.+......+...+.+.|++++|+.+|+++.+.+..
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            33444445555544433   567777777777664 556667777777777888888888888888777654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.37  E-value=0.035  Score=55.13  Aligned_cols=91  Identities=16%  Similarity=0.052  Sum_probs=69.7

Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCC---CCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC-CCC-HHh
Q 006744          419 MGALLEIGEVKKALYLFGKMRGLN---LEVN----SLSFSIAIQCHVESGDILEACECHNKIIEM-----SQ-VPS-VAA  484 (632)
Q Consensus       419 i~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~-~~~  484 (632)
                      +..+.+.|++++|+.++++..+..   +.|+    ..+++.+..+|...|++++|..+++++++.     |. .|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            455667889999999999887541   2233    347888889999999999999999988752     21 233 566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q 006744          485 YNCLTKGLCKIGEIDAAMMLVRDCL  509 (632)
Q Consensus       485 ~~~li~~~~~~g~~~~A~~~~~~~~  509 (632)
                      ++.|...|...|++++|+.++++++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            8888999999999999999988765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.39  Score=40.23  Aligned_cols=100  Identities=12%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             hhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 006744          388 VGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEAC  467 (632)
Q Consensus       388 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~  467 (632)
                      ....|+++.|.++.+.+     .+...|..|.......|+++-|.+.|.....         +..+.-.|.-.|+.++..
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            34567788887777665     2567788888888888888888888887653         445555666677777776


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      ++-+.....|-      ++.....+...|+++++.++|.+
T Consensus        81 kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           81 KMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            66666555441      45555566677888888887765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.27  E-value=1.7  Score=47.01  Aligned_cols=151  Identities=10%  Similarity=0.054  Sum_probs=65.1

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhh--hcccHHHHHHHHHHHHhCCCCChhHHH---HHHHHHHhcCC
Q 006744          353 CAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVG--KEERIMMALDVFEELKGKGYSSVPIYN---ILMGALLEIGE  427 (632)
Q Consensus       353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~---~li~~~~~~g~  427 (632)
                      +...|+-+....++..+.+..   +..+...+..+++  ..|+.+.+..+.+.+.....+ ..-|.   ++..+|+..|+
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp-~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDES-LLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCH-HHHHHHHHHHHHHTTTSCC
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHhcCCCC
Confidence            334455555555555554432   2233333333332  345555555555555543211 11122   23344555566


Q ss_pred             hhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHH
Q 006744          428 VKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI-DAAMMLVR  506 (632)
Q Consensus       428 ~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~  506 (632)
                      .....+++..+.... ..+......+.-++...|+.+.+.+++..+.+.+ .|.+..-..+.-+....|.. .+|+.++.
T Consensus       576 ~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          576 NSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            555555666655431 1222222222223344555555555555444432 23333333333333333332 45555665


Q ss_pred             HHh
Q 006744          507 DCL  509 (632)
Q Consensus       507 ~~~  509 (632)
                      .+.
T Consensus       654 ~L~  656 (963)
T 4ady_A          654 PLT  656 (963)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.20  E-value=0.016  Score=57.58  Aligned_cols=84  Identities=5%  Similarity=-0.122  Sum_probs=41.6

Q ss_pred             CChhHHHHHHHHHHHc---CCcc----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhhHHHHHHH
Q 006744          252 GRVVRGHELFREMKEN---GILI----DRAIYGVLIEGLVGEGKVGKACDLLKDLVDS-----GY-RAD-LGIYNSIIGG  317 (632)
Q Consensus       252 g~~~~a~~~~~~m~~~---~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~-~~~-~~~~~~li~~  317 (632)
                      |++++|+.++++..+.   -+.+    ...+++.|...|...|++++|+.++++..+.     |. .|+ ..+++.|...
T Consensus       312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~  391 (433)
T 3qww_A          312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL  391 (433)
T ss_dssp             SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence            4556666666554431   1111    1235555556666666666666655555431     21 111 2345555555


Q ss_pred             HHccCCHHHHHHHHHHHH
Q 006744          318 LCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       318 ~~~~g~~~~A~~~~~~m~  335 (632)
                      |...|++++|+.++++..
T Consensus       392 ~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          392 YMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHH
Confidence            555566555555555443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.24  Score=41.48  Aligned_cols=104  Identities=12%  Similarity=0.164  Sum_probs=68.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC
Q 006744          174 VPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR  253 (632)
Q Consensus       174 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  253 (632)
                      =|+...+.|+++.|.++.+.+      -+...|..|.....+.|+++-|.+.|.....         +..+.-.|.-.|+
T Consensus        11 rF~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           11 RFDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence            355566667777777776665      3677788888888888888888888877642         3344445555677


Q ss_pred             hhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          254 VVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKD  298 (632)
Q Consensus       254 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  298 (632)
                      .+.-.++-+.....|      -++.....+.-.|+++++.++|.+
T Consensus        76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            666655555444443      244555556667788877777754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.93  E-value=0.086  Score=39.50  Aligned_cols=55  Identities=16%  Similarity=0.244  Sum_probs=27.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          456 CHVESGDILEACECHNKIIEMSQVPSVA-AYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       456 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      .+...|++++|...|+++++... .+.. .+..+..+|...|++++|++.|+++++.
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34445555555555555554321 1233 4555555555555555555555555544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.79  E-value=0.00018  Score=69.64  Aligned_cols=204  Identities=9%  Similarity=0.060  Sum_probs=129.9

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          202 DVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       202 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      ...+|..|..+..+.+.+.+|++.|-+      .-|...|..+|.+..+.|.+++-.+.+...++. .+ +..+=+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHH
Confidence            345688888888888888888776632      235667888889888999999888888766654 22 4555678888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC--------------------CCC
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDD--------------------LAP  341 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------------------~~p  341 (632)
                      +|++.+++.+.++++.       .||..-...+.+-|...|.++.|.-+|..+....                    -.-
T Consensus       125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAn  197 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN  197 (624)
T ss_dssp             HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCC
T ss_pred             HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999888766544432       2455555556666666666666666554332110                    112


Q ss_pred             CHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 006744          342 DFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGA  421 (632)
Q Consensus       342 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~  421 (632)
                      +..||..+-.+|...+++..|.-.--.++-.     ..-...++..|-+.|.+++.+.+++.-.........+|+.|.-.
T Consensus       198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL  272 (624)
T 3lvg_A          198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL  272 (624)
T ss_dssp             SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            5678888888998888877665444333322     11122234446666777777777766554333366666666666


Q ss_pred             HHhc
Q 006744          422 LLEI  425 (632)
Q Consensus       422 ~~~~  425 (632)
                      |++-
T Consensus       273 YsKY  276 (624)
T 3lvg_A          273 YSKF  276 (624)
T ss_dssp             HHSS
T ss_pred             HHhc
Confidence            6654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.41  E-value=0.28  Score=36.37  Aligned_cols=46  Identities=11%  Similarity=-0.067  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006744          464 LEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       464 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  510 (632)
                      ++|..++++.++.. +-+......+...+.+.|++++|+..|+++++
T Consensus        26 ~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           26 DEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444444444422 11233334444444444444444444444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.31  E-value=1  Score=44.79  Aligned_cols=167  Identities=12%  Similarity=0.071  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVN-----SLSFSIAIQCHVESGDILEACECHNKIIE----MSQVPS--VA  483 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~p~--~~  483 (632)
                      ...|...|...|++.+|..++.++...-...+     ...+...++.|...+++..|..++.++..    ....|+  ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            45667777888888888888887753211111     23456667778888888888888887642    222222  34


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHH----HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006744          484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYAL----TILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAI  559 (632)
Q Consensus       484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  559 (632)
                      .+...+..+...+++.+|.+.|.++.......-+...+..    ++....-.+....--.++........-++...|..+
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L  299 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL  299 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence            5677777888888998888888877654222222222211    111112222111112222222222223566778888


Q ss_pred             HHHHHhc--CCHHHHHHHHHHHHH
Q 006744          560 ISGMCKH--GTLEEARKVFTNLRE  581 (632)
Q Consensus       560 ~~~~~~~--g~~~~A~~~~~~m~~  581 (632)
                      +.+|...  .+++.+.+.|.....
T Consensus       300 ~k~f~~~~L~~~~~~~~~~~~~L~  323 (445)
T 4b4t_P          300 VKLFTTNELMRWPIVQKTYEPVLN  323 (445)
T ss_dssp             HHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred             HHHHHhchHhhhHHHHHHHHHHhc
Confidence            8888754  456776666654443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.23  E-value=0.12  Score=42.17  Aligned_cols=67  Identities=18%  Similarity=0.127  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          517 TEFKYALTILHVCRSG---EAEKIIEVLNEMTQEGCPP--NEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       517 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      +..+.-.+.+++++++   +.++++.+|++..+.. .|  +...+-.|.-+|.+.|++++|+++++.+.+..+
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP  102 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  102 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            3334333555666555   4446666666666543 23  234444555566677777777777777766654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.21  E-value=0.86  Score=35.80  Aligned_cols=140  Identities=13%  Similarity=0.062  Sum_probs=88.6

Q ss_pred             HhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744          423 LEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM  502 (632)
Q Consensus       423 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  502 (632)
                      .-.|..++..++..+....   .+..-|+-+|--....-+-+-..+.++.+-+   ..|..          .+|++....
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDis----------~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDLD----------KCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCGG----------GCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCcH----------hhhcHHHHH
Confidence            3456666777777766652   2444455555444444444444444444322   22211          233333333


Q ss_pred             HHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      ..+-.+      ..+....+..+..+..+|+-+.-.+++.++... .+|++...-.+..+|.+.|+..+|.+++++.-++
T Consensus        82 ~C~~~~------n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           82 ECGVIN------NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHT------TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHh------cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            333221      123334555677788899999999999997554 4789999999999999999999999999999999


Q ss_pred             CCC
Q 006744          583 KLL  585 (632)
Q Consensus       583 ~~~  585 (632)
                      |+.
T Consensus       155 G~k  157 (172)
T 1wy6_A          155 GEK  157 (172)
T ss_dssp             TCH
T ss_pred             hhH
Confidence            974

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.12  E-value=0.23  Score=37.72  Aligned_cols=61  Identities=13%  Similarity=0.054  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHcC------CcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          241 YVTLIMGLCKGGRVVRGHELFREMKENG------ILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD  301 (632)
Q Consensus       241 ~~~li~~~~~~g~~~~a~~~~~~m~~~~------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  301 (632)
                      +-.+...+...|++..|...|+...+.-      -.....++..|..+|.+.|+++.|...+++..+
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3344444444444444444444443310      011334444444555555555555555554444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.00  E-value=0.26  Score=37.48  Aligned_cols=28  Identities=18%  Similarity=0.249  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          554 VICSAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       554 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                      .++..|..++.+.|+++.|..+++++.+
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3444444444444444444444444444

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.87  E-value=0.3  Score=39.79  Aligned_cols=79  Identities=15%  Similarity=0.129  Sum_probs=34.0

Q ss_pred             HHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCcc--cHHhHHHHHHHHHhcCCHHHHHHHH
Q 006744          222 CLRVWEEMKKDLVEADVMAYVTLIMGLCKGG---RVVRGHELFREMKENGILI--DRAIYGVLIEGLVGEGKVGKACDLL  296 (632)
Q Consensus       222 A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~  296 (632)
                      +.+-|.+..+.| .++..+.-.+..++++.+   ++++++.+|++..+.+ .|  +...+-.|.-+|.+.|++++|.+.+
T Consensus        17 ~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~   94 (152)
T 1pc2_A           17 FEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV   94 (152)
T ss_dssp             HHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             HHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence            333344333333 234444444444444444   3445555555544433 11  1223333334445555555555555


Q ss_pred             HHHHHC
Q 006744          297 KDLVDS  302 (632)
Q Consensus       297 ~~m~~~  302 (632)
                      +.+.+.
T Consensus        95 ~~lL~i  100 (152)
T 1pc2_A           95 RGLLQT  100 (152)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            555443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.77  E-value=0.0048  Score=60.03  Aligned_cols=398  Identities=12%  Similarity=0.046  Sum_probs=214.5

Q ss_pred             HHHHHHhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006744          121 LVAEVLKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCK  200 (632)
Q Consensus       121 ~~~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  200 (632)
                      .|..+..+.+.++.-++++..+.+.   ..+...=+.|+-+|++.+++.+.++++.                       .
T Consensus        88 eVi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~-----------------------~  141 (624)
T 3lvg_A           88 EVVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN-----------------------G  141 (624)
T ss_dssp             HHHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS-----------------------C
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc-----------------------C
Confidence            5666667778888888888765443   3344555789999999998876554422                       1


Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC--------------------CCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKD--------------------LVEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------------~~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      ||..-...+..-|...|.++.|.-+|..+...                    .-.-+..||..+-.+|...+.+.-|.-.
T Consensus       142 ~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic  221 (624)
T 3lvg_A          142 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC  221 (624)
T ss_dssp             CSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred             CCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence            44444455555555555555555544433210                    0023667899999999999988887666


Q ss_pred             HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CC
Q 006744          261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DL  339 (632)
Q Consensus       261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~  339 (632)
                      --.++-.     ..-...++..|-..|.+++.+.+++.-... -......|+.|.-.|++- +.++..+.++....+ ++
T Consensus       222 GLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi  294 (624)
T 3lvg_A          222 GLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI  294 (624)
T ss_dssp             HHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC
T ss_pred             cchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH
Confidence            5554432     122334667788889999988888877632 124677888888888876 344444333322111 11


Q ss_pred             C------CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChh
Q 006744          340 A------PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVP  413 (632)
Q Consensus       340 ~------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  413 (632)
                      .      -....|.-++-.|.+-.+++.|...+   .++  +++..-.........+..+.+--.+.+.--.+.   .+.
T Consensus       295 pKviracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e---~P~  366 (624)
T 3lvg_A          295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF---KPL  366 (624)
T ss_dssp             TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS---CCT
T ss_pred             HHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---HhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh---ChH
Confidence            1      01223444444444444444332211   100  000000000001112222222222222221222   222


Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhC----------CCCcCHHHHHHHHHHHHHcCCHHHHHH------------HHH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGL----------NLEVNSLSFSIAIQCHVESGDILEACE------------CHN  471 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----------~~~p~~~t~~~ll~~~~~~g~~~~a~~------------~~~  471 (632)
                      ..+-|+.++...=|...+.++|++.-..          .-.-+...-.++-..|....|++.-..            +-+
T Consensus       367 lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~  446 (624)
T 3lvg_A          367 LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQ  446 (624)
T ss_dssp             TSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHH
T ss_pred             HHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHH
Confidence            3455555555544555555555442110          001223333444455666666554322            222


Q ss_pred             HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006744          472 KIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPP  551 (632)
Q Consensus       472 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p  551 (632)
                      ++.+   ..-...-..-...|.++++|++++.+.++    ...-.|      .|.....+|+.+-|.++++-.++.|   
T Consensus       447 rLEk---HeL~eFRrIAA~LYkkn~rw~qsi~l~Kk----DklykD------AietAa~S~~~elaeeLL~yFv~~g---  510 (624)
T 3lvg_A          447 RLEK---HELIEFRRIAAYLFKGNNRWKQSVELCKK----DSLYKD------AMQYASESKDTELAEELLQWFLQEE---  510 (624)
T ss_dssp             HHHT---CSSHHHHHHHHHHHHTTCHHHHHSSCSST----TCCTTG------GGTTTTTCCCTTHHHHHHHHHHHHC---
T ss_pred             HHhh---CchHHHHHHHHHHHHhcccHHHHHHHHHh----cccHHH------HHHHHHHcCCHHHHHHHHHHHHHcC---
Confidence            2222   12233334445667889999999876643    122222      4566678899999999999998876   


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHH
Q 006744          552 NEVICSAIISGMCKHGTLEEARKV  575 (632)
Q Consensus       552 ~~~~~~~l~~~~~~~g~~~~A~~~  575 (632)
                      +...|...+-.|...=+.+-++++
T Consensus       511 ~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          511 KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             chHHHHHHHHHHhhccChHHHHHH
Confidence            566677777777777777766655

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.57  E-value=0.25  Score=45.08  Aligned_cols=85  Identities=12%  Similarity=0.035  Sum_probs=54.8

Q ss_pred             cHHHHHHHHHHHHhCCCC--ChhHHHHHHHHHHh-----cCChhhHHHHHHHHhhCCCCc--CHHHHHHHHHHHHH-cCC
Q 006744          393 RIMMALDVFEELKGKGYS--SVPIYNILMGALLE-----IGEVKKALYLFGKMRGLNLEV--NSLSFSIAIQCHVE-SGD  462 (632)
Q Consensus       393 ~~~~a~~~~~~~~~~~~~--~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p--~~~t~~~ll~~~~~-~g~  462 (632)
                      ....|...+++..+.++.  +-..|..+...|.+     -|+.++|.+.|++..+.  .|  +..++......++. .|+
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~gd  255 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPLNN  255 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTTTC
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhcCC
Confidence            345566666666666555  45567777777777     37777777777777764  34  25555556666655 377


Q ss_pred             HHHHHHHHHHHHHCCCC
Q 006744          463 ILEACECHNKIIEMSQV  479 (632)
Q Consensus       463 ~~~a~~~~~~~~~~~~~  479 (632)
                      .+++.+.+++.+.....
T Consensus       256 ~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          256 RAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHHcCCCC
Confidence            77777777777765544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.33  E-value=0.34  Score=44.20  Aligned_cols=54  Identities=9%  Similarity=0.044  Sum_probs=25.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC
Q 006744          532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKH-GTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       532 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~  585 (632)
                      |+.++|.++|++..+.+-.-+..++..+.+.++.. |+.++|.+++++.+.....
T Consensus       218 Gd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          218 GGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             CCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             CCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            44555555555544442111244444444444442 5555555555555554444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.84  E-value=0.74  Score=36.00  Aligned_cols=86  Identities=12%  Similarity=0.018  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 006744          497 EIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEK---IIEVLNEMTQEGCPP--NEVICSAIISGMCKHGTLEE  571 (632)
Q Consensus       497 ~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~  571 (632)
                      .+..+.+-|.+......  ++..+--.+.+++.++.+...   ++.++++....+ .|  .....-.|.-++.+.|++++
T Consensus        16 ~l~~~~~~y~~e~~~~~--~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS--VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC--CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            34444445554443322  333333336666666655444   777777777654 22  33344456667778888888


Q ss_pred             HHHHHHHHHHCCCC
Q 006744          572 ARKVFTNLRERKLL  585 (632)
Q Consensus       572 A~~~~~~m~~~~~~  585 (632)
                      |+++++.+++..+.
T Consensus        93 A~~~~~~lL~~eP~  106 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQ  106 (126)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCC
Confidence            88888888877653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.83  E-value=0.31  Score=39.21  Aligned_cols=54  Identities=7%  Similarity=0.100  Sum_probs=43.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744          532 GEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLT  586 (632)
Q Consensus       532 g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  586 (632)
                      ++.++|.++|+.+.+.+-.- ..+|.....--.++|+++.|++++...+..+..|
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            78889999999887653233 7777777777778999999999999999988765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.60  E-value=1.7  Score=35.02  Aligned_cols=104  Identities=12%  Similarity=0.076  Sum_probs=63.8

Q ss_pred             cCHHhHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCcCHH-hHHHHHH------HHHhcCChhHHHHHHHHHHHc
Q 006744          201 PDVFAYTAMIRVLAAERNL------DACLRVWEEMKKDLVEADVM-AYVTLIM------GLCKGGRVVRGHELFREMKEN  267 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~-~~~~li~------~~~~~g~~~~a~~~~~~m~~~  267 (632)
                      -|..+|-..+...-+.|+.      ++..++|++.... ++|+.. .|...|.      .+...++.++|.++|+.+++.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            3566677777777767777      6777777776653 344421 1111111      112236788888888887665


Q ss_pred             CCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006744          268 GILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRA  306 (632)
Q Consensus       268 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  306 (632)
                      +-. =..+|....+.=.+.|++..|.+++......+.+|
T Consensus        90 hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           90 CKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             CTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             hHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            222 25566666666677788888888888777776653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.83  E-value=8.2  Score=38.24  Aligned_cols=51  Identities=8%  Similarity=0.057  Sum_probs=32.7

Q ss_pred             cCChhHHHHHHHHHHhC-----CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006744          216 ERNLDACLRVWEEMKKD-----LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE  266 (632)
Q Consensus       216 ~g~~~~A~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  266 (632)
                      .|++++|++.+-.+.+.     +..-.......++..|...|+++...+.+..+.+
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk   84 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK   84 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            36777777777665542     1233455566777778888888777776665544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.50  E-value=0.81  Score=35.79  Aligned_cols=23  Identities=22%  Similarity=0.189  Sum_probs=9.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q 006744          524 TILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       524 l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      |..++.+.|++++|.++++.+.+
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            33334444444444444444443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.71  E-value=1  Score=35.42  Aligned_cols=70  Identities=14%  Similarity=0.078  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          516 PTEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       516 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      |+..+--.+.+++.++.+   ..+++.+++++.+.+..-....+-.|.-++.+.|++++|+++.+.+.+..+.
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~  110 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  110 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence            444443336777777654   4568888888877652123555667777888999999999999999887654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=91.68  E-value=2.7  Score=33.52  Aligned_cols=71  Identities=14%  Similarity=0.072  Sum_probs=48.6

Q ss_pred             CChHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          515 GPTEFKYALTILHVCRSGE---AEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       515 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      .|+..+--.+.+++.++.+   ..+++.+++++...+..-.....-.|.-++.+.|++++|+++.+.+.+..+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            3555444446777777754   4578888888877542223444556667888999999999999999888654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.54  E-value=10  Score=36.56  Aligned_cols=160  Identities=8%  Similarity=0.036  Sum_probs=82.2

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHhhCCCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHhHHH--
Q 006744          417 ILMGALLEIGEVKKALYLFGKMRGLNLEVN-----SLSFSIAIQCHVESGDILEACECHNKIIEM--SQVPSVAAYNC--  487 (632)
Q Consensus       417 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~~--  487 (632)
                      .++..|...|++.+|.+++.++.+.--..|     ...|..-++.|...+++.++...+......  .+.+++.+...  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            467777788888888777777765311212     123555566777888888888887776532  22233332221  


Q ss_pred             --HHHHHH-hcCCHHHHHHHHHHHhhcCCCC--C---hHHHHHHHHHHHHHcCCHHHHHHHHH-HHHhCCCCCCHHHHHH
Q 006744          488 --LTKGLC-KIGEIDAAMMLVRDCLGNVASG--P---TEFKYALTILHVCRSGEAEKIIEVLN-EMTQEGCPPNEVICSA  558 (632)
Q Consensus       488 --li~~~~-~~g~~~~A~~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~  558 (632)
                        -...+. ..+++.+|...|-+........  |   +...|.  +.+..-.++..+...++. .....-..|+...+..
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYl--vL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~  261 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYM--LLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKS  261 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH--HHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHH--HHHHHHcCCHHHHHHHhccccccccCCccHHHHHH
Confidence              123345 6788888887777665432221  1   122232  222222233222222221 1111112355555556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 006744          559 IISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       559 l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      ++.++ ..|++.+..++++..
T Consensus       262 L~~a~-~~~dl~~f~~iL~~~  281 (394)
T 3txn_A          262 VAEAS-HKRSLADFQAALKEY  281 (394)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHS
T ss_pred             HHHHH-HhCCHHHHHHHHHHH
Confidence            66554 556676666655544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.33  E-value=2.8  Score=44.37  Aligned_cols=66  Identities=11%  Similarity=0.093  Sum_probs=48.9

Q ss_pred             CCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHHH
Q 006744          513 ASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG---------TLEEARKVFTNLR  580 (632)
Q Consensus       513 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---------~~~~A~~~~~~m~  580 (632)
                      ..+.+..-|..|.....+.+++++|++.|+.....  .-+...+..|+..|.+.+         +.+..+.+.-++.
T Consensus       608 ~~kks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~  682 (754)
T 4gns_B          608 DEKHSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKI  682 (754)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHH
Confidence            33456667888888888888888888888888875  467888888888888776         6666555554443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.05  E-value=4.4  Score=45.92  Aligned_cols=84  Identities=13%  Similarity=0.118  Sum_probs=49.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006744          484 AYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTE---FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAII  560 (632)
Q Consensus       484 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~  560 (632)
                      -|..++..|.+.|.++.+.++-+.+++......+.   ..|..+..++...|++++|...+-.+.....  -...+..|+
T Consensus       901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV  978 (1139)
T 4fhn_B          901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV  978 (1139)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence            35566666777777777777766666543323221   2356667777777777777777766655432  344555666


Q ss_pred             HHHHhcCCH
Q 006744          561 SGMCKHGTL  569 (632)
Q Consensus       561 ~~~~~~g~~  569 (632)
                      ..+|..|..
T Consensus       979 ~~lce~~~~  987 (1139)
T 4fhn_B          979 NQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHCCH
T ss_pred             HHHHhCCCh
Confidence            655555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=90.84  E-value=17  Score=37.68  Aligned_cols=115  Identities=11%  Similarity=0.093  Sum_probs=53.3

Q ss_pred             ChhhHHHHHHHHhhCCCCcCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 006744          427 EVKKALYLFGKMRGLNLEVNSLSFSIAIQC----HVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAM  502 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~----~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  502 (632)
                      +.+.|...|....... ..+......+-..    ....+...++...+.......  .+.....-.+....+.|+++.|.
T Consensus       229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~  305 (618)
T 1qsa_A          229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN  305 (618)
T ss_dssp             CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence            5667777776665432 1222222222222    222232334445555443322  22222333333344557777777


Q ss_pred             HHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          503 MLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      ..|+.+...... -+...| -+..++...|+.++|..+|+.+.+
T Consensus       306 ~~~~~l~~~~~~-~~r~~Y-W~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          306 TWLARLPMEAKE-KDEWRY-WQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHSCTTGGG-SHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHccccccc-cHhHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence            777665432111 111111 145555666777777777776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.70  E-value=4  Score=43.22  Aligned_cols=51  Identities=16%  Similarity=0.068  Sum_probs=36.7

Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          528 VCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       528 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      +...|+++.|+++.++.+.. .+-+..+|..|..+|.+.|+++.|+-.++.+
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            44567777777777777765 2455667778888888888888877777666

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.60  E-value=4.9  Score=39.05  Aligned_cols=71  Identities=17%  Similarity=0.089  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHH-----cCCcccHHhHH
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKE-----NGILIDRAIYG  277 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~  277 (632)
                      ...++..+...|++++|+..+..+.... +.+...|..+|.++.+.|+..+|++.|+.+.+     .|+.|...+-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            3445566666677777776666665543 34666677777777777777777777666543     46666655433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.38  E-value=11  Score=34.91  Aligned_cols=127  Identities=9%  Similarity=-0.057  Sum_probs=66.7

Q ss_pred             HHHHhhCCCCcCHHHHHHHHHHHHHcCCHH-HHHHHHHHHH----HCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          435 FGKMRGLNLEVNSLSFSIAIQCHVESGDIL-EACECHNKII----EMS--QVPSVAAYNCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       435 ~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~~~~----~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      ++-..+.+++++......++..+.....-+ .-.++.+.++    +.|  ..-++.....+...|.+.|++.+|...|-.
T Consensus        80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~  159 (312)
T 2wpv_A           80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML  159 (312)
T ss_dssp             HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence            333444455666655555555544322111 1122333333    222  234778888999999999999999987742


Q ss_pred             HhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006744          508 CLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE--GCPPNEVIC-SAIISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       508 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                           +..-+...+..++.-+...               .  |.+-+...| ...+-.|.-.|+...|..+|+...+
T Consensus       160 -----~~~~s~~~~a~~l~~w~~~---------------~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~  216 (312)
T 2wpv_A          160 -----GTHDSMIKYVDLLWDWLCQ---------------VDDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLE  216 (312)
T ss_dssp             -----SCHHHHHHHHHHHHHHHHH---------------TTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred             -----CCCccHHHHHHHHHHHHHh---------------cCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence                 1111333443333333222               1  221112222 2223345677899999999887754

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.74  E-value=30  Score=37.56  Aligned_cols=260  Identities=12%  Similarity=0.043  Sum_probs=121.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--C-----CCHhcHHHHHHH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRAD--LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL--A-----PDFSTVNPLLVC  352 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--~-----p~~~~~~~ll~~  352 (632)
                      +....|+.++++.+++.....+-..+  ...-..+.-+....|..+++..++.......-  .     +....-.++.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34556666666666655443210112  12222333444555555566666665543211  0     001111222222


Q ss_pred             HHhcCC-hhHHHHHHHHHHHCCCCccc-cHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhh
Q 006744          353 CAEMGR-MDNFFKLLAQMEKLKFSVAA-DLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKK  430 (632)
Q Consensus       353 ~~~~~~-~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  430 (632)
                      .+-.|. -+++.+.+..+....-.... .....+..++.-.|+-+....++..+.+....+..-.-.+.-++...|+.+.
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~  542 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL  542 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence            222332 23445555554443221100 1112233334456676666777766655431122223333344446677777


Q ss_pred             HHHHHHHHhhCCCCcCHHHHH---HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006744          431 ALYLFGKMRGLNLEVNSLSFS---IAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRD  507 (632)
Q Consensus       431 A~~~~~~m~~~~~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  507 (632)
                      +..+++.+.... .|.. -|.   ++.-+|+..|+.....+++..+.+.. ..++.-...+.-++...|+.+.+.++++.
T Consensus       543 ~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~  619 (963)
T 4ady_A          543 ADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL  619 (963)
T ss_dssp             GHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred             HHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence            777777776531 2222 222   22335666777776666777776532 22333333333344455665555666654


Q ss_pred             HhhcCCCCChHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 006744          508 CLGNVASGPTEFKYALTILHVCRSGEA-EKIIEVLNEMTQ  546 (632)
Q Consensus       508 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~  546 (632)
                      +.+.  ..|....-..+..+....|+. .++++++..+..
T Consensus       620 L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          620 LSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             GGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            4432  134443333444444444443 567777777764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.07  E-value=9.3  Score=43.28  Aligned_cols=157  Identities=10%  Similarity=0.062  Sum_probs=92.9

Q ss_pred             HhcCCChhHHHHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCChhHHhHHHHHHHhc----CCHHHHHHHHHHHHhCC--C
Q 006744          126 LKVENNPTLASKFFHWAGKQKGYKHNFASYNALAYCLSRNNLFRAADQVPELMDSQ----GRIAEMLEILEKMRRNL--C  199 (632)
Q Consensus       126 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~----g~~~~a~~~~~~m~~~~--~  199 (632)
                      +...+.++.+.++..|..      .+...--.+..++...|++++|.+.|.+....    +.......-+..+....  .
T Consensus       822 l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~  895 (1139)
T 4fhn_B          822 LFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ  895 (1139)
T ss_dssp             HHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred             HHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence            444556777888877753      34444455678888999999999988764310    00000001112222111  1


Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcC----HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHh
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEAD----VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAI  275 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  275 (632)
                      ..-..-|..++..+.+.+.++.+.++-....+..-.-+    ...|..+.+++...|++++|...+-.+.....+  ...
T Consensus       896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~c  973 (1139)
T 4fhn_B          896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSC  973 (1139)
T ss_dssp             CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHH
Confidence            11234577788888888888888877766554321111    125677788888888888888888777655433  344


Q ss_pred             HHHHHHHHHhcCCHH
Q 006744          276 YGVLIEGLVGEGKVG  290 (632)
Q Consensus       276 ~~~li~~~~~~g~~~  290 (632)
                      ...|+..+|..|..+
T Consensus       974 Lr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          974 LLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHhCCChh
Confidence            555666666655543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.96  E-value=2  Score=41.80  Aligned_cols=72  Identities=10%  Similarity=0.018  Sum_probs=60.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHH
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVD-----SGYRADLGIYN  312 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~  312 (632)
                      +...++..+...|+.+++...+..+.....- +...|..+|.+|.+.|+..+|++.|+.+..     .|+.|+..+-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            4456778888999999999999999876543 888999999999999999999999998764     49998877644

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=86.68  E-value=4.5  Score=29.67  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=23.8

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL  233 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  233 (632)
                      +|++++|..+.+.+    +.||...|-+|-.  .+.|.-+++...+..+...|
T Consensus        53 rG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg   99 (116)
T 2p58_C           53 RGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ   99 (116)
T ss_dssp             TTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred             chhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence            34444444444333    2466666655543  35555556655555555554

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.68  E-value=21  Score=33.41  Aligned_cols=83  Identities=11%  Similarity=0.027  Sum_probs=47.4

Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006744          479 VPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA  558 (632)
Q Consensus       479 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  558 (632)
                      .-|+.....+...|.+.+++.+|...|-  .   +..+....|..++..+...+...              ..|..+-..
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l---g~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRa  193 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L---GTKESPEVLARMEYEWYKQDESH--------------TAPLYCARA  193 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T---SCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHH--h---cCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHH
Confidence            3567778888899999999999988872  2   33344345543443333322211              112222222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 006744          559 IISGMCKHGTLEEARKVFTNLRE  581 (632)
Q Consensus       559 l~~~~~~~g~~~~A~~~~~~m~~  581 (632)
                       +--|.-.|++..|..+++...+
T Consensus       194 -VL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          194 -VLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             -HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHHhCCHHHHHHHHHHHHH
Confidence             3345567788888777666554

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.52  E-value=29  Score=34.06  Aligned_cols=101  Identities=15%  Similarity=0.017  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCCCC--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHh--HH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGLNLE--VNSLSFSIAIQCHVESGDILEACECHNKIIEM---SQVPSVAA--YN  486 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~p~~~~--~~  486 (632)
                      ++..+...|.+.|++++|.+.|.++......  --...+..+++.+...+++..+...+.++...   +..++...  ..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            5677888888888888888888888764222  22345677778888888888888888877542   22232211  11


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 006744          487 CLTKGLCKIGEIDAAMMLVRDCLGNVAS  514 (632)
Q Consensus       487 ~li~~~~~~g~~~~A~~~~~~~~~~~~~  514 (632)
                      .-+..+...+++.+|.+.|-++......
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence            1122344678899998888887765443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.51  E-value=4.3  Score=29.73  Aligned_cols=32  Identities=13%  Similarity=-0.105  Sum_probs=16.9

Q ss_pred             CcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 006744          200 KPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDL  233 (632)
Q Consensus       200 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  233 (632)
                      .||...|-+|-.  .+.|.-+++...+..+...|
T Consensus        67 ~pdlepw~ALce--~rlGl~s~le~rL~~la~sg   98 (115)
T 2uwj_G           67 WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS   98 (115)
T ss_dssp             CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred             CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence            356555555443  35555555555555555544

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.37  E-value=11  Score=30.97  Aligned_cols=118  Identities=8%  Similarity=-0.033  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHH-H
Q 006744          450 FSIAIQCHVESGDILEACECHNKIIEMS-QVPS-------VAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEF-K  520 (632)
Q Consensus       450 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~p~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~-~  520 (632)
                      +..-++.+...|.++.|.-+.+.+.... ..++       ..++..+.+++...|++.+|...|+++++....-+... .
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4445566777888888877777655321 1233       12455667777888888888888887654322111110 0


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006744          521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR  580 (632)
Q Consensus       521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  580 (632)
                      +..+.   ... ....         ......+...--.+..+|.+.|++++|+.+++.+.
T Consensus       103 ~~~~~---~~s-s~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          103 RPSTG---NSA-STPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             ---------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             ccccc---ccC-CCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            00000   000 0000         00122334444557788889999999998876553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=83.44  E-value=6.3  Score=32.36  Aligned_cols=62  Identities=6%  Similarity=-0.087  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 006744          414 IYNILMGALLEIGEVKKALYLFGKMRGLN-LEVNS-------LSFSIAIQCHVESGDILEACECHNKIIE  475 (632)
Q Consensus       414 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~~~~  475 (632)
                      .+-.-+..+...|.++.|+-+.+.+.... ..++.       .++..+.+++...+++..|...|++.++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            45556788889999999998888765431 23332       3567778899999999999999999865

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=83.11  E-value=3.2  Score=37.22  Aligned_cols=55  Identities=16%  Similarity=0.195  Sum_probs=33.7

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          491 GLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      .+.+.|++++|++....-++..+...+..  ..++.-+|-.|+++.|.+-++...+.
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R--~~LfqLLcv~G~w~RA~~QL~~~a~l   60 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLR--SSFIELLCIDGDFERADEQLMQSIKL   60 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHH--HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            34566777777777766665543333322  33667777777777777766666654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=82.43  E-value=13  Score=27.51  Aligned_cols=47  Identities=2%  Similarity=-0.067  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006744          221 ACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN  267 (632)
Q Consensus       221 ~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  267 (632)
                      +..+-++.+-...+.|+.....+.+++|-+.+++..|.++|+-++.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            45555555555556666666666666666666666666666665543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=81.64  E-value=34  Score=31.93  Aligned_cols=47  Identities=9%  Similarity=-0.072  Sum_probs=27.7

Q ss_pred             CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcC
Q 006744          307 DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG  357 (632)
Q Consensus       307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  357 (632)
                      |......+...|.+.+++.+|...|-    .|-.+....|..++.-+...+
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~  181 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQD  181 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTS
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhc
Confidence            45556667778888888888877763    233323356655554444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	632
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.23
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.2
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.19
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.15
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.12
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.07
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.04
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.04
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.0
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.58
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.54
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.41
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.38
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.36
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.31
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.31
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.3
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.25
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.18
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.11
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.11
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.11
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.08
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.0
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.89
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.88
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.76
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.73
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.72
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.7
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.55
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.53
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.52
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.47
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.43
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.41
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.38
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.32
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.96
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.84
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.46
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.19
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.74
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.65
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.35
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.09
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	89.11
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	82.96

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-20  Score=186.49  Aligned_cols=376  Identities=13%  Similarity=0.036  Sum_probs=194.7

Q ss_pred             cCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHH
Q 006744          181 QGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHEL  260 (632)
Q Consensus       181 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  260 (632)
                      .|++++|+..++++.+..+ -+..++..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|++.
T Consensus        12 ~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~   89 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH   89 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccc
Confidence            3556666666666555422 245666666777777777777777777766543 23456666677777777777777777


Q ss_pred             HHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006744          261 FREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA  340 (632)
Q Consensus       261 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  340 (632)
                      +....+.... +..............+....+............. ...............+....+...+........ 
T Consensus        90 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  166 (388)
T d1w3ba_          90 YRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-  166 (388)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccCc-
Confidence            7766665433 3334444444444444444444444444433322 333344445555566666666666655554321 


Q ss_pred             CCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 006744          341 PDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMG  420 (632)
Q Consensus       341 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~  420 (632)
                      -+...+..+...+...|+++.|...+.+..+.... +...+..+..++...|++++|...+++....+......+..+..
T Consensus       167 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  245 (388)
T d1w3ba_         167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC  245 (388)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHH
Confidence            13344555555556666666666666655544322 22333444444555555555555555555544444445555555


Q ss_pred             HHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 006744          421 ALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDA  500 (632)
Q Consensus       421 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~  500 (632)
                      .+.+.|++++|...|++..+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...+...|++++
T Consensus       246 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  323 (388)
T d1w3ba_         246 VYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE  323 (388)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHH
Confidence            5555555555555555554432 2233444445555555555555555555544432 2234444455555555555555


Q ss_pred             HHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006744          501 AMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHG  567 (632)
Q Consensus       501 A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g  567 (632)
                      |++.|+++++..+  -+...|..+...+...|++++|++.|+++.+.. +-+...|..+..+|.+.|
T Consensus       324 A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         324 AVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            5555555443211  122334444555555555555555555555432 223444555555554444

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-20  Score=185.72  Aligned_cols=381  Identities=13%  Similarity=0.055  Sum_probs=308.8

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      +...+.+.|++++|++.|+++.+.. +-+...+..+..++.+.|++++|.+.|++..+.... +..++..+..+|.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence            4556788999999999999998764 346788999999999999999999999999987554 67899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          289 VGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       289 ~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      +++|...+......... +...+..........+....+............. ...............+....+...+..
T Consensus        83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHH
Confidence            99999999999987554 5555555666666667777776666665554333 334445555666777888888888887


Q ss_pred             HHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH
Q 006744          369 MEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL  448 (632)
Q Consensus       369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~  448 (632)
                      ....... .......+...+...|++++|...+++..+..+.+..+|..+...+...|++++|...+++....+ ..+..
T Consensus       161 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  238 (388)
T d1w3ba_         161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV  238 (388)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred             hhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence            7765543 445666777888899999999999999998887788999999999999999999999999988764 45667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 006744          449 SFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHV  528 (632)
Q Consensus       449 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~  528 (632)
                      .+..+...+.+.|++++|...|+++++... -+..++..+...+...|++++|++.++......  ..+...+..+...+
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--CccchhhhHHHHHH
Confidence            788888999999999999999999998642 357788999999999999999999999988754  34556677788999


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCCChhhHHHHHHHHhh
Q 006744          529 CRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLLTEANTIVYDEILIEHMK  602 (632)
Q Consensus       529 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~l~~~~~~  602 (632)
                      ...|++++|++.+++..+.. +.+..++..+..+|.+.|++++|.+.|++..+.+..   +...|..+-..+.+
T Consensus       316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~---~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT---FADAYSNMGNTLKE  385 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence            99999999999999998874 557888999999999999999999999999987543   23344444444433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.8e-13  Score=126.98  Aligned_cols=92  Identities=14%  Similarity=0.099  Sum_probs=54.2

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCC
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGK  288 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  288 (632)
                      ....+.+.|++++|++.|++..+.. +-+..+|..+..++...|++++|...|++..+.... +...+..+..+|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            3444556666666666666666553 224556666666666666666666666666554333 45555556666666666


Q ss_pred             HHHHHHHHHHHHHC
Q 006744          289 VGKACDLLKDLVDS  302 (632)
Q Consensus       289 ~~~a~~~~~~m~~~  302 (632)
                      +++|.+.++.....
T Consensus       103 ~~~A~~~~~~~~~~  116 (323)
T d1fcha_         103 QRQACEILRDWLRY  116 (323)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             ccccccchhhHHHh
Confidence            66666666665543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.5e-12  Score=124.53  Aligned_cols=87  Identities=10%  Similarity=0.073  Sum_probs=58.4

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHH
Q 006744          179 DSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGH  258 (632)
Q Consensus       179 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  258 (632)
                      .+.|++++|+..|+++.+..+. +..+|..+...+...|++++|...|++..+.. +-+...|..+..++...|++++|.
T Consensus        30 ~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~  107 (323)
T d1fcha_          30 LQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQAC  107 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccc
Confidence            3567777777777777765432 56667777777777777777777777766543 234566666677777777777777


Q ss_pred             HHHHHHHHc
Q 006744          259 ELFREMKEN  267 (632)
Q Consensus       259 ~~~~~m~~~  267 (632)
                      +.+++....
T Consensus       108 ~~~~~~~~~  116 (323)
T d1fcha_         108 EILRDWLRY  116 (323)
T ss_dssp             HHHHHHHHT
T ss_pred             cchhhHHHh
Confidence            777776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.8e-09  Score=101.72  Aligned_cols=221  Identities=9%  Similarity=0.054  Sum_probs=153.4

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCcccHHhHHHHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGG-RVVRGHELFREMKENGILIDRAIYGVLIE  281 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~  281 (632)
                      ..+|+.+...+.+.+.+++|+++++++++.+ +-+...|+....++...| ++++|++.++...+.... +..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            3456666677778888888888888888764 345667788777777765 478888888888887655 6788888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          282 GLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       282 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      .+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|++.++++.+.+.. +...|+.+...+.+.+..  
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~--  196 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGY--  196 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCS--
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHcccc--
Confidence            888888888888888888887655 7788888888888888888888888888876533 555666555444444432  


Q ss_pred             HHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhC
Q 006744          362 FFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGL  441 (632)
Q Consensus       362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  441 (632)
                                                 ...+.+++|.+.+....+..+.+...|+.+...+.. ...+++...++...+.
T Consensus       197 ---------------------------~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         197 ---------------------------NDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL  248 (315)
T ss_dssp             ---------------------------CSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred             ---------------------------chhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence                                       123445666666766666666677777777665544 3456677777666553


Q ss_pred             CCC-cCHHHHHHHHHHH
Q 006744          442 NLE-VNSLSFSIAIQCH  457 (632)
Q Consensus       442 ~~~-p~~~t~~~ll~~~  457 (632)
                      ... .+...+..+...|
T Consensus       249 ~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         249 QPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             TTTCCCHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHH
Confidence            222 2233444444444

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=5.1e-09  Score=98.51  Aligned_cols=126  Identities=10%  Similarity=0.106  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006744          240 AYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEG-KVGKACDLLKDLVDSGYRADLGIYNSIIGGL  318 (632)
Q Consensus       240 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~  318 (632)
                      .|+.+...+.+.+..++|+++++++++.++. +...|+....++...| ++++|+..++...+.... +..+|+.+...+
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHH
Confidence            3344444444445555555555555554333 3444444444444443 245555555554444333 444444444445


Q ss_pred             HccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHH
Q 006744          319 CRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQ  368 (632)
Q Consensus       319 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  368 (632)
                      .+.|++++|+..++++.+.... +...|..+...+...|++++|.+.++.
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~  171 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQ  171 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5555555555555544443211 333344444444444444333333333

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=1.4e-08  Score=97.50  Aligned_cols=276  Identities=13%  Similarity=0.005  Sum_probs=154.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC----HhcHHHH
Q 006744          279 LIEGLVGEGKVGKACDLLKDLVDSGYRAD----LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDL-APD----FSTVNPL  349 (632)
Q Consensus       279 li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l  349 (632)
                      ....+...|++++|++++++..+.....+    ...+..+...|...|++++|+..|++..+... .++    ...+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            34455666666666666666655422211    23455566666677777777777766543210 011    1223334


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCh
Q 006744          350 LVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEV  428 (632)
Q Consensus       350 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~  428 (632)
                      ...+...|++..+...+.......                            ......... ....+..+...+...|++
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~----------------------------~~~~~~~~~~~~~~~~~la~~~~~~~~~  149 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLI----------------------------NEQHLEQLPMHEFLVRIRAQLLWAWARL  149 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----------------------------HhcccchhhHHHHHHHHHHHHHHHhcch
Confidence            445555666666665555443210                            000000000 122344555666667777


Q ss_pred             hhHHHHHHHHhhCC----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----CCC--CHHhHHHHHHHHHhcCCH
Q 006744          429 KKALYLFGKMRGLN----LEVNSLSFSIAIQCHVESGDILEACECHNKIIEMS----QVP--SVAAYNCLTKGLCKIGEI  498 (632)
Q Consensus       429 ~~A~~~~~~m~~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~p--~~~~~~~li~~~~~~g~~  498 (632)
                      +.+...+.......    .......+......+...++...+...+.......    ..+  ....+..+...+...|++
T Consensus       150 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (366)
T d1hz4a_         150 DEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK  229 (366)
T ss_dssp             HHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccH
Confidence            77776666654421    12223344455556666777777776666555321    111  123345556667778888


Q ss_pred             HHHHHHHHHHhhcCCCCC--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHH
Q 006744          499 DAAMMLVRDCLGNVASGP--TEFKYALTILHVCRSGEAEKIIEVLNEMTQ----EGCPPN-EVICSAIISGMCKHGTLEE  571 (632)
Q Consensus       499 ~~A~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~~~~~l~~~~~~~g~~~~  571 (632)
                      ++|...+++........+  ....+..+...+...|++++|...++++..    .+..|+ ..++..+..+|...|++++
T Consensus       230 ~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  309 (366)
T d1hz4a_         230 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD  309 (366)
T ss_dssp             HHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH
Confidence            888888877654432222  233455567777788888888888877653    233333 3467777888888888888


Q ss_pred             HHHHHHHHHHC
Q 006744          572 ARKVFTNLRER  582 (632)
Q Consensus       572 A~~~~~~m~~~  582 (632)
                      |.+.+++..+.
T Consensus       310 A~~~l~~Al~l  320 (366)
T d1hz4a_         310 AQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877553

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=2.6e-08  Score=95.53  Aligned_cols=271  Identities=13%  Similarity=0.036  Sum_probs=165.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcC------HHhHHHHHHHHHhcCChhHHHHHHHHHHHcC----Cc-ccHHhHH
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEAD------VMAYVTLIMGLCKGGRVVRGHELFREMKENG----IL-IDRAIYG  277 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~  277 (632)
                      ....+...|++++|+++|++..+..  |+      ..++..+..++...|++++|.+.|++..+..    .. .....+.
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            4456678899999999998887653  32      2456677788888899999999888876531    11 1133556


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCHhcH
Q 006744          278 VLIEGLVGEGKVGKACDLLKDLVDS----GYR--A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLA----PDFSTV  346 (632)
Q Consensus       278 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~  346 (632)
                      .+...+...|++..+...+......    +..  + ....+..+...+...|+++.+...+.........    .....+
T Consensus        96 ~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  175 (366)
T d1hz4a_          96 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  175 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHH
Confidence            6677788888888888887776532    111  1 1234555667777888888888888777653221    112233


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 006744          347 NPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIG  426 (632)
Q Consensus       347 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g  426 (632)
                      ......+...++...+...+..............                            ......+..+...+...|
T Consensus       176 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~  227 (366)
T d1hz4a_         176 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS----------------------------DWISNANKVRVIYWQMTG  227 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH----------------------------HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC----------------------------chHHHHHHHHHHHHHhcc
Confidence            3444455556666666555544432111000000                            002234556666777788


Q ss_pred             ChhhHHHHHHHHhhCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHhHHHHHHHHHhcCCH
Q 006744          427 EVKKALYLFGKMRGLNLEV---NSLSFSIAIQCHVESGDILEACECHNKIIEM----SQVPS-VAAYNCLTKGLCKIGEI  498 (632)
Q Consensus       427 ~~~~A~~~~~~m~~~~~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~  498 (632)
                      ++++|...+.+........   ....+..+..++...|++++|...++.+...    +..|+ ..++..+..+|...|++
T Consensus       228 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  307 (366)
T d1hz4a_         228 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRK  307 (366)
T ss_dssp             CHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             cHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCH
Confidence            8888888887766543221   2234455666777778888887777766532    22232 44566677777778888


Q ss_pred             HHHHHHHHHHh
Q 006744          499 DAAMMLVRDCL  509 (632)
Q Consensus       499 ~~A~~~~~~~~  509 (632)
                      ++|.+.+++.+
T Consensus       308 ~~A~~~l~~Al  318 (366)
T d1hz4a_         308 SDAQRVLLDAL  318 (366)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88887777654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=1e-08  Score=96.29  Aligned_cols=186  Identities=8%  Similarity=-0.011  Sum_probs=95.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHH
Q 006744          288 KVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLA  367 (632)
Q Consensus       288 ~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  367 (632)
                      ..++|..+|++..+.....+...|...+..+.+.|++++|..+|+++.+.........|...+..+.+.|+.+.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            34566667766665433335556666666667777777777777776654332223345666666666666666666666


Q ss_pred             HHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC-CCcC
Q 006744          368 QMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN-LEVN  446 (632)
Q Consensus       368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~  446 (632)
                      ++.+.+.............-+...|+.+.|..+|+.+.+..+.+...|...+..+.+.|+++.|..+|++..... ..|+
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence            665554332211111111112233455555555555555444455555555555555555555555555554432 1221


Q ss_pred             --HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006744          447 --SLSFSIAIQCHVESGDILEACECHNKI  473 (632)
Q Consensus       447 --~~t~~~ll~~~~~~g~~~~a~~~~~~~  473 (632)
                        ...|...+..-...|+.+.+..+++++
T Consensus       239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~  267 (308)
T d2onda1         239 KSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             GCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              123333333333444444444444444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=2.6e-08  Score=93.46  Aligned_cols=188  Identities=11%  Similarity=0.018  Sum_probs=127.7

Q ss_pred             ccHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006744          392 ERIMMALDVFEELKGKGYS-SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECH  470 (632)
Q Consensus       392 g~~~~a~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~  470 (632)
                      +..++|..+|++..+...+ +...|...+..+.+.|+++.|..+|+++...........|...+..+.+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            4456677777776654333 666777777777788888888888888776432222345777777777788888888888


Q ss_pred             HHHHHCCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Q 006744          471 NKIIEMSQVPSVAAYNCLTKG-LCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRSGEAEKIIEVLNEMTQEG-  548 (632)
Q Consensus       471 ~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g-  548 (632)
                      +++.+.... +...|...... +...|+.+.|..+|+.++...+  .+...|...+..+...|+.+.|..+|++..+.. 
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p--~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            887765432 33334333332 3345778888888888776532  234566667777778888888888888877653 


Q ss_pred             CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          549 CPPN--EVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       549 ~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                      ..|+  ...|...+.--...|+.+.+.++++++.+.
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2332  457777777777788888888888888765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5.9e-09  Score=95.31  Aligned_cols=96  Identities=11%  Similarity=-0.136  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV  284 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  284 (632)
                      +|..+...|.+.|++++|++.|++..+.. +-+..+|..+..++.+.|++++|++.|+++.+.... +..++..+..+|.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            34444445555555555555555554432 223444555555555555555555555555544322 3334444445555


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 006744          285 GEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~~  302 (632)
                      ..|++++|.+.|+...+.
T Consensus       117 ~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh
Confidence            555555555555554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=6.2e-09  Score=95.15  Aligned_cols=197  Identities=12%  Similarity=-0.057  Sum_probs=117.0

Q ss_pred             HHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHc
Q 006744          381 EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVES  460 (632)
Q Consensus       381 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~  460 (632)
                      +..+..+|.+.|++++|++.|++..+..+.+..+|+.+..+|.+.|++++|+..|+++.+.. +-+..++..+..++...
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~  118 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYG  118 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHH
Confidence            33445556667777777777777776666677778888888888888888888888877743 23445667777777788


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHc----CCHHH
Q 006744          461 GDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCRS----GEAEK  536 (632)
Q Consensus       461 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~  536 (632)
                      |++++|...|+..++... .+......+..++.+.+..+.+..+...........+.   ++ ++..+...    +..+.
T Consensus       119 g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~  193 (259)
T d1xnfa_         119 GRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG---WN-IVEFYLGNISEQTLMER  193 (259)
T ss_dssp             TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH---HH-HHHHHTTSSCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh---hh-HHHHHHHHHHHHHHHHH
Confidence            888888888887776542 23333333444445555555554444443332222221   11 11111111    11222


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          537 IIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       537 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      +...+....... +-...+|..+...|...|++++|.+.|++.+..++
T Consensus       194 ~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  240 (259)
T d1xnfa_         194 LKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  240 (259)
T ss_dssp             HHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence            222222111110 11234677788889999999999999999887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=2.8e-09  Score=101.72  Aligned_cols=232  Identities=5%  Similarity=-0.084  Sum_probs=137.1

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHH
Q 006744          322 KQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMG--RMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD  399 (632)
Q Consensus       322 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  399 (632)
                      |++++|+.+++...+.... +...|..+..++...+  +++++...+..+.+................+...+..++|..
T Consensus        87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHH
Confidence            3455666666665544322 3334444444444443  355666666666555443322333334455566677778888


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 006744          400 VFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQV  479 (632)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  479 (632)
                      .++.+.+.++.+..+|+.+...+.+.|++++|...+......  .|+.   ..+...+...+..+++...+........ 
T Consensus       166 ~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~-  239 (334)
T d1dcea1         166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRA-  239 (334)
T ss_dssp             HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCC-
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCc-
Confidence            888877777778888998989999988888876555443331  1221   2223344556667777777777766542 


Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006744          480 PSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGP-TEFKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSA  558 (632)
Q Consensus       480 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  558 (632)
                      .+...+..++..+...|+.++|...+.+....   .| +...|..+...+...|++++|++.++++.+.. |.+...|..
T Consensus       240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~  315 (334)
T d1dcea1         240 EPLFRCELSVEKSTVLQSELESCKELQELEPE---NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDD  315 (334)
T ss_dssp             CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh---CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHH
Confidence            33444555666677777788888877776533   23 33445556666667777777777777777653 223445555


Q ss_pred             HHHHHH
Q 006744          559 IISGMC  564 (632)
Q Consensus       559 l~~~~~  564 (632)
                      |...+.
T Consensus       316 L~~~~~  321 (334)
T d1dcea1         316 LRSKFL  321 (334)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            544443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=3e-09  Score=101.55  Aligned_cols=146  Identities=5%  Similarity=-0.048  Sum_probs=89.0

Q ss_pred             cCChhHHHHHHHHHHhCCCCcCH-HhHHHHHHH---H-------HhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHH
Q 006744          216 ERNLDACLRVWEEMKKDLVEADV-MAYVTLIMG---L-------CKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLV  284 (632)
Q Consensus       216 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~li~~---~-------~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  284 (632)
                      .+..++|++++++..+.  .|+. ..|+..-..   +       ...|++++|+.+++...+.... +...|..+..++.
T Consensus        42 ~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~  118 (334)
T d1dcea1          42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLS  118 (334)
T ss_dssp             TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHH
Confidence            33446777777777665  3443 334332222   2       2234467777777777776544 5666666666665


Q ss_pred             hcC--CHHHHHHHHHHHHHCCCCCCHhhHH-HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          285 GEG--KVGKACDLLKDLVDSGYRADLGIYN-SIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       285 ~~g--~~~~a~~~~~~m~~~g~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      ..+  ++++|...++++.+.... +...|. .....+...+.+++|+..++.+.+.+.. +...|..+..++...|++++
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~  196 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPD  196 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCC
T ss_pred             HhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHH
Confidence            554  477888888887776443 444443 3345666778888888888777765533 56667777777777777766


Q ss_pred             HHHHH
Q 006744          362 FFKLL  366 (632)
Q Consensus       362 a~~~~  366 (632)
                      |...+
T Consensus       197 A~~~~  201 (334)
T d1dcea1         197 SGPQG  201 (334)
T ss_dssp             SSSCC
T ss_pred             HHHHH
Confidence            54333

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.8e-06  Score=73.79  Aligned_cols=125  Identities=10%  Similarity=0.001  Sum_probs=82.0

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744          212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  291 (632)
                      .+...|++++|++.|+++.    +++..+|..+..++...|++++|++.|++.++.+.. +...|..+..+|.+.|++++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~   88 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDL   88 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHH
Confidence            3566777777777776542    456666667777777777777777777777766544 56677777777777777777


Q ss_pred             HHHHHHHHHHCCCC--------------C-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006744          292 ACDLLKDLVDSGYR--------------A-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAP  341 (632)
Q Consensus       292 a~~~~~~m~~~g~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p  341 (632)
                      |++.|++.......              . ...++..+..++.+.|++++|.+.|+...+....+
T Consensus        89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            77777776542110              0 12345566677788888888888888777654443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=2e-06  Score=79.30  Aligned_cols=129  Identities=13%  Similarity=0.006  Sum_probs=72.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC----CCCc-CHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----C-CcccHHhHHH
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKD----LVEA-DVMAYVTLIMGLCKGGRVVRGHELFREMKEN----G-ILIDRAIYGV  278 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~  278 (632)
                      ....|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++|.+.+++..+.    | ......++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            345567777777777777766542    1111 1345666777777777777777777765442    1 1111334445


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          279 LIEGLVG-EGKVGKACDLLKDLVDS----GYRA-DLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       279 li~~~~~-~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      +...|.. .|++++|++.+++..+.    +..+ -..+|..+...|...|++++|+..|++....
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            5555533 47777777776665431    1111 1234555666666667777777776666543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.5e-06  Score=71.99  Aligned_cols=127  Identities=15%  Similarity=-0.004  Sum_probs=89.0

Q ss_pred             HHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006744          415 YNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK  494 (632)
Q Consensus       415 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~  494 (632)
                      |+. ...+...|++++|++.|.++.    +++..++..+..+|...|++++|.+.|++.++... -+...|..+..+|.+
T Consensus         9 ~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           9 WNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHh
Confidence            443 556677888888888887642    56777788888888888888888888888887652 347778888888888


Q ss_pred             cCCHHHHHHHHHHHhhcCCCCC--------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 006744          495 IGEIDAAMMLVRDCLGNVASGP--------------TEFKYALTILHVCRSGEAEKIIEVLNEMTQE  547 (632)
Q Consensus       495 ~g~~~~A~~~~~~~~~~~~~~p--------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  547 (632)
                      .|++++|++.|++.+......+              ....+..+..++.+.|++++|.+.++...+.
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            8888888888888764321111              0123334555666666777776666666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.1e-05  Score=74.29  Aligned_cols=142  Identities=11%  Similarity=0.019  Sum_probs=94.4

Q ss_pred             CChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHc----CCcc-cHHhHHHHHHHHHhcCCHHH
Q 006744          217 RNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKEN----GILI-DRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       217 g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~  291 (632)
                      +++++|.++|.+.               ...|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++
T Consensus        31 ~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~   95 (290)
T d1qqea_          31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN   95 (290)
T ss_dssp             HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHH
Confidence            3467777776654               56788889999999999887653    1111 24578888899999999999


Q ss_pred             HHHHHHHHHHC----CC-CCCHhhHHHHHHHHH-ccCCHHHHHHHHHHHHhC----CCCC-CHhcHHHHHHHHHhcCChh
Q 006744          292 ACDLLKDLVDS----GY-RADLGIYNSIIGGLC-RVKQFDKAYKLFEVTVQD----DLAP-DFSTVNPLLVCCAEMGRMD  360 (632)
Q Consensus       292 a~~~~~~m~~~----g~-~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~  360 (632)
                      |.+.+++..+.    |. .....++..+...|. ..|++++|+..+++..+.    +..+ -..++..+...+...|+++
T Consensus        96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~  175 (290)
T d1qqea_          96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI  175 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence            99998876642    11 111345556666664 458888888888776532    1111 1234556667777777777


Q ss_pred             HHHHHHHHHHHCC
Q 006744          361 NFFKLLAQMEKLK  373 (632)
Q Consensus       361 ~a~~~~~~~~~~~  373 (632)
                      +|...++++....
T Consensus       176 ~A~~~~~~~~~~~  188 (290)
T d1qqea_         176 EASDIYSKLIKSS  188 (290)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC
Confidence            7777777766543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=7.4e-06  Score=63.37  Aligned_cols=90  Identities=13%  Similarity=-0.018  Sum_probs=48.4

Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHH
Q 006744          211 RVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVG  290 (632)
Q Consensus       211 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  290 (632)
                      ..+.+.|++++|+..|++.++.. +-+...|..+..++...|++++|+..+.+..+.+.. +...|..+..++...|+++
T Consensus        11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_          11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHH
Confidence            34455555555555555555443 234445555555555555555555555555554433 4455555555555555555


Q ss_pred             HHHHHHHHHHHC
Q 006744          291 KACDLLKDLVDS  302 (632)
Q Consensus       291 ~a~~~~~~m~~~  302 (632)
                      +|+..|++..+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            555555555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=5.7e-06  Score=68.28  Aligned_cols=91  Identities=12%  Similarity=0.116  Sum_probs=44.6

Q ss_pred             HHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 006744          419 MGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI  498 (632)
Q Consensus       419 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~  498 (632)
                      ...|.+.|++++|+..|.+..+.. +-+...|..+..+|...|++++|...|+++++.. +-+...|..++.+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            344455555555555555555432 2233444444445555555555555555555432 12334455555555555555


Q ss_pred             HHHHHHHHHHhhc
Q 006744          499 DAAMMLVRDCLGN  511 (632)
Q Consensus       499 ~~A~~~~~~~~~~  511 (632)
                      ++|...+++++..
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            5555555554443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.8e-06  Score=67.81  Aligned_cols=92  Identities=8%  Similarity=-0.056  Sum_probs=63.5

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCH
Q 006744          210 IRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKV  289 (632)
Q Consensus       210 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  289 (632)
                      ...|.+.|++++|+..|++..+.. +-+...|..+..+|...|++++|.+.|++.++.... +..+|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence            445667777777777777776654 345666777777777777777777777777766443 556677777777777777


Q ss_pred             HHHHHHHHHHHHCC
Q 006744          290 GKACDLLKDLVDSG  303 (632)
Q Consensus       290 ~~a~~~~~~m~~~g  303 (632)
                      ++|...+++.....
T Consensus        95 ~eA~~~~~~a~~~~  108 (159)
T d1a17a_          95 RAALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcC
Confidence            77777777776654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.31  E-value=0.00072  Score=62.06  Aligned_cols=291  Identities=10%  Similarity=0.043  Sum_probs=152.7

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      ||..--..+...|.+.|.++.|..+|..+.         -|.-++..+.+.++++.|.+++.+.      -+..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHH
Confidence            444444555666667777777777776543         2455666667777777776665533      1455666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChh
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMD  360 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  360 (632)
                      ..+.+......+     .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+. +
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~  149 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-Q  149 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-H
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-H
Confidence            666666554433     1112222234444456667777777777777777765432 23344556666666665432 2


Q ss_pred             HHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhh
Q 006744          361 NFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRG  440 (632)
Q Consensus       361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  440 (632)
                      +   +.+.+.....                .=+.+.+.++.+        ....|..++..|.+.|++++|..++-+-  
T Consensus       150 k---l~e~l~~~s~----------------~y~~~k~~~~c~--------~~~l~~elv~Ly~~~~~~~~A~~~~i~~--  200 (336)
T d1b89a_         150 K---MREHLELFWS----------------RVNIPKVLRAAE--------QAHLWAELVFLYDKYEEYDNAIITMMNH--  200 (336)
T ss_dssp             H---HHHHHHHHST----------------TSCHHHHHHHHH--------TTTCHHHHHHHHHHTTCHHHHHHHHHHS--
T ss_pred             H---HHHHHHhccc----------------cCCHHHHHHHHH--------HcCChHHHHHHHHhcCCHHHHHHHHHHc--
Confidence            2   2222222110                011222222221        1223666777777777777776654321  


Q ss_pred             CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCChHHH
Q 006744          441 LNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASGPTEFK  520 (632)
Q Consensus       441 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~p~~~~  520 (632)
                         .++.......+..+.+.++.+...++....++.  .|  ...+.|+......-+..+..+.+++             
T Consensus       201 ---~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r~V~~~~k-------------  260 (336)
T d1b89a_         201 ---PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSK-------------  260 (336)
T ss_dssp             ---TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHH-------------
T ss_pred             ---chhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHHHHHHHHh-------------
Confidence               233334455566677777777666666665553  23  3345566666666666666665544             


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006744          521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKV  575 (632)
Q Consensus       521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~  575 (632)
                                .++......+++...+.|   +..+.++|...|...++++.-++.
T Consensus       261 ----------~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~  302 (336)
T d1b89a_         261 ----------VKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTS  302 (336)
T ss_dssp             ----------TTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ----------cCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHH
Confidence                      344555566666655554   456888899999998887554433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.3e-05  Score=61.97  Aligned_cols=92  Identities=14%  Similarity=0.058  Sum_probs=75.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006744          244 LIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQ  323 (632)
Q Consensus       244 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~  323 (632)
                      -...+...|++++|+..|++.++.... +...|..+..+|.+.|++++|+..++...+.++. +...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence            456677888888888888888887554 7778888888888888888888888888887654 77788888888888888


Q ss_pred             HHHHHHHHHHHHhC
Q 006744          324 FDKAYKLFEVTVQD  337 (632)
Q Consensus       324 ~~~A~~~~~~m~~~  337 (632)
                      +++|+..|++..+.
T Consensus        87 ~~~A~~~~~~a~~~  100 (117)
T d1elwa_          87 FEEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888888764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.30  E-value=0.00083  Score=60.11  Aligned_cols=223  Identities=12%  Similarity=-0.026  Sum_probs=122.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHh----cCChhHHHHHHHHHHHcCCcccHHhHHH
Q 006744          203 VFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCK----GGRVVRGHELFREMKENGILIDRAIYGV  278 (632)
Q Consensus       203 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~  278 (632)
                      ...+..|...+.+.+++++|++.|++..+.|   +...+-.|...|..    ..+...|...+....+.+.   ......
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---~~a~~~   75 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---SNGCHL   75 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---cchhhc
Confidence            3455666666777788888888888877765   44555555666654    4567777777777766652   223333


Q ss_pred             HHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----ccCCHHHHHHHHHHHHhCCCCCCHhcHHHHH
Q 006744          279 LIEGLV----GEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLC----RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLL  350 (632)
Q Consensus       279 li~~~~----~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll  350 (632)
                      +...+.    ...+.+.|...++...+.|..   .....+...+.    .......+...+......+   +...+..+.
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~  149 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  149 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence            333333    245677777777777766532   22222222222    2344566666666655432   444555555


Q ss_pred             HHHHh----cCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhh----cccHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 006744          351 VCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGK----EERIMMALDVFEELKGKGYSSVPIYNILMGAL  422 (632)
Q Consensus       351 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~  422 (632)
                      ..+..    ..+...+..++....+.|.   ......+..+|..    ..+.+.|...|....+.+  +...+..|...|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g~---~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y  224 (265)
T d1ouva_         150 SLYDAGRGTPKDLKKALASYDKACDLKD---SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQ  224 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             hhhccCCCcccccccchhhhhccccccc---cccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHH
Confidence            55554    2344455555555555442   2222222222322    345666666666666655  455555555555


Q ss_pred             Hh----cCChhhHHHHHHHHhhCC
Q 006744          423 LE----IGEVKKALYLFGKMRGLN  442 (632)
Q Consensus       423 ~~----~g~~~~A~~~~~~m~~~~  442 (632)
                      .+    ..+.++|.+.|++....|
T Consensus       225 ~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         225 YNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HcCCCCccCHHHHHHHHHHHHHCc
Confidence            54    235666666666665554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.27  E-value=0.0013  Score=58.90  Aligned_cols=225  Identities=12%  Similarity=-0.006  Sum_probs=119.5

Q ss_pred             HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCccccHHHH
Q 006744          308 LGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE----MGRMDNFFKLLAQMEKLKFSVAADLEKF  383 (632)
Q Consensus       308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  383 (632)
                      ...+..|...+.+.+++++|+++|++..+.|   +...+..|...|..    ..+...+...+....+.+.         
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~---------   69 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY---------   69 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc---------
Confidence            3455566666777778888888888777665   34444445455543    3344555555555444432         


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHH-
Q 006744          384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLE----IGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHV-  458 (632)
Q Consensus       384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~-  458 (632)
                                                  ......+...+..    ..+.+.|...++.....|..   .....+...+. 
T Consensus        70 ----------------------------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~  118 (265)
T d1ouva_          70 ----------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHD  118 (265)
T ss_dssp             ----------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHH
T ss_pred             ----------------------------cchhhccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccC
Confidence                                        2222333222222    23445555555555544421   11111111111 


Q ss_pred             ---HcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH-
Q 006744          459 ---ESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCK----IGEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR-  530 (632)
Q Consensus       459 ---~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-  530 (632)
                         .......+...+......   .+...+..|...|..    ..+...+...++...+.    .+......+...+.. 
T Consensus       119 ~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~----g~~~A~~~lg~~y~~g  191 (265)
T d1ouva_         119 GKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHG  191 (265)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHT
T ss_pred             CCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc----cccccccchhhhcccC
Confidence               123344555555554442   234445555555553    34555666666655432    123333334444443 


Q ss_pred             ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 006744          531 ---SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK----HGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       531 ---~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~  585 (632)
                         ..+.++|+.+|++..+.|   ++..+..|...|.+    ..+.++|.++|++..+.|..
T Consensus       192 ~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         192 EGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             CSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             cccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence               457888888888888876   45566667776664    34778888888888887753

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=7.2e-06  Score=70.75  Aligned_cols=97  Identities=7%  Similarity=-0.055  Sum_probs=47.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006744          237 DVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIG  316 (632)
Q Consensus       237 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~  316 (632)
                      +...+......+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..|++.++..+. +..+|..+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHH
Confidence            3334444444455555555555555554444322 4444555555555555555555555555443322 3444555555


Q ss_pred             HHHccCCHHHHHHHHHHHH
Q 006744          317 GLCRVKQFDKAYKLFEVTV  335 (632)
Q Consensus       317 ~~~~~g~~~~A~~~~~~m~  335 (632)
                      +|.+.|++++|+..|++..
T Consensus        81 ~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHH
Confidence            5555555555555555443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=1e-05  Score=69.68  Aligned_cols=100  Identities=10%  Similarity=-0.083  Sum_probs=86.1

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      |+...+......|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++..+.... +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            666777778888999999999999999888764 457888999999999999999999999999876443 677899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 006744          281 EGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      .+|.+.|++++|+..|++..+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988753

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=0.0033  Score=57.52  Aligned_cols=135  Identities=13%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             CHHHHHHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 006744          151 NFASYNALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMK  230 (632)
Q Consensus       151 ~~~~~~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  230 (632)
                      |..--..+...|.+.|.++.|..++..+..                         |..++..+.+.++++.|.+++.+..
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-------------------------~~rl~~~~v~l~~~~~avd~~~k~~   67 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-------------------------FGRLASTLVHLGEYQAAVDGARKAN   67 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTC-------------------------HHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-------------------------HHHHHHHHHhhccHHHHHHHHHHcC
Confidence            333334455556666666665555543221                         5566666777777777777665442


Q ss_pred             hCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh
Q 006744          231 KDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGI  310 (632)
Q Consensus       231 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~  310 (632)
                            +..+|..+...|........+     .+.......+......++..|-..|.+++...+++...... ..+...
T Consensus        68 ------~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~  135 (336)
T d1b89a_          68 ------STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM  135 (336)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHH
T ss_pred             ------CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHH
Confidence                  455677777777766555432     22222333355555667777777788888777777765432 236667


Q ss_pred             HHHHHHHHHccC
Q 006744          311 YNSIIGGLCRVK  322 (632)
Q Consensus       311 ~~~li~~~~~~g  322 (632)
                      ++.++..|++.+
T Consensus       136 ~~~L~~lyak~~  147 (336)
T d1b89a_         136 FTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            777777777754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.3e-05  Score=64.23  Aligned_cols=65  Identities=15%  Similarity=-0.054  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          520 KYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       520 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      +|+.+..+|.+.|++++|+..+++.++.. +.+..+|..+..+|...|++++|...|++..+.++.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            45557777788888888888888888774 557778888888888888888888888888887643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.11  E-value=1.2e-05  Score=61.62  Aligned_cols=85  Identities=13%  Similarity=0.030  Sum_probs=36.9

Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHH
Q 006744          212 VLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGK  291 (632)
Q Consensus       212 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  291 (632)
                      .+.+.|++++|+..|++..+.. +-+..+|..+..++.+.|++++|+..|++..+.... +..++..+..+|...|+.++
T Consensus        25 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~~  102 (112)
T d1hxia_          25 SMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA  102 (112)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHHH
Confidence            3444444444444444444332 123444444444444444444444444444443322 33444444444444444444


Q ss_pred             HHHHHHH
Q 006744          292 ACDLLKD  298 (632)
Q Consensus       292 a~~~~~~  298 (632)
                      |++.|++
T Consensus       103 A~~~l~~  109 (112)
T d1hxia_         103 ALASLRA  109 (112)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.08  E-value=1.7e-05  Score=60.69  Aligned_cols=91  Identities=10%  Similarity=-0.012  Sum_probs=74.9

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccC
Q 006744          243 TLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVK  322 (632)
Q Consensus       243 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g  322 (632)
                      .+...+.+.|++++|...|++..+.... +..+|..+..++.+.|++++|+..|++..+..+. +..+|..+...|...|
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCC
Confidence            3456677889999999999988887654 6788888888899999999999999988887654 6778888888899999


Q ss_pred             CHHHHHHHHHHHH
Q 006744          323 QFDKAYKLFEVTV  335 (632)
Q Consensus       323 ~~~~A~~~~~~m~  335 (632)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999998888753

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.2e-05  Score=60.82  Aligned_cols=92  Identities=15%  Similarity=0.123  Sum_probs=37.7

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCccc-HHhHHHHHHHHH
Q 006744          209 MIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGR---VVRGHELFREMKENGILID-RAIYGVLIEGLV  284 (632)
Q Consensus       209 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~  284 (632)
                      +++.+...+++++|.+.|++....+ +.+..++..+..++.+.++   +++|+.+|+++.+.+..|+ ..++..|..+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            3334444444444444444444432 2333444444444443222   2234444444443332222 123334444444


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 006744          285 GEGKVGKACDLLKDLVD  301 (632)
Q Consensus       285 ~~g~~~~a~~~~~~m~~  301 (632)
                      +.|++++|++.|+++.+
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            44444444444444444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=6.6e-05  Score=58.03  Aligned_cols=93  Identities=10%  Similarity=-0.017  Sum_probs=63.0

Q ss_pred             HHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC---hhhHHHHHHHHhhCCCCcCH-HHHHHHHHHHHH
Q 006744          384 FEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGE---VKKALYLFGKMRGLNLEVNS-LSFSIAIQCHVE  459 (632)
Q Consensus       384 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~p~~-~t~~~ll~~~~~  459 (632)
                      ++..+...+++++|++.|++....++.+..++..+..++.+.++   +++|+.+|+++...+..|+. .++..+..+|.+
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            34445566777777777777777777777777777777776443   44577777777765433332 256666777777


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 006744          460 SGDILEACECHNKIIEM  476 (632)
Q Consensus       460 ~g~~~~a~~~~~~~~~~  476 (632)
                      .|++++|.+.|+++++.
T Consensus        85 ~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHh
Confidence            77777777777777774

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=0.00022  Score=59.05  Aligned_cols=110  Identities=11%  Similarity=-0.068  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      +......+.+.|++++|++.|++..+..  +...            +....-......+       -..+|+.+..+|.+
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~~------------~~~~~~~~~~~~~-------~~~~~~nla~~y~k   74 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWL--EYES------------SFSNEEAQKAQAL-------RLASHLNLAMCHLK   74 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCC------------CCCSHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhcc------------ccchHHHhhhchh-------HHHHHHHHHHHHHh
Confidence            4445566777888888888887766431  0000            0000000000000       11234455555556


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      .|++++|+..++..+...+. +..+|..+..+|...|++++|+..|++..+.
T Consensus        75 ~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          75 LQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            66666666666655554433 4555555556666666666666666655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.88  E-value=0.00017  Score=58.54  Aligned_cols=66  Identities=12%  Similarity=-0.049  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      .+|..+..+|.+.|++++|++.+++.++.. +.+..+|..++.++...|++++|...|++..+.++.
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  133 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN  133 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            356668888889999999999999998875 668889999999999999999999999999988753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=0.0003  Score=54.89  Aligned_cols=56  Identities=21%  Similarity=0.198  Sum_probs=22.3

Q ss_pred             HHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006744          418 LMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKII  474 (632)
Q Consensus       418 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~  474 (632)
                      +...+.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|++++|.+.+++++
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            3344444444444444444444322 1223333333444444444444444444433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.73  E-value=0.00037  Score=56.34  Aligned_cols=111  Identities=8%  Similarity=-0.050  Sum_probs=61.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHh
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVG  285 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  285 (632)
                      +..-...+.+.|++++|+..|.+....-  +...            ...+..  .......    ....+|+.+..+|.+
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~~------------~~~~~~--~~~~~~~----~~~~~~~Nla~~~~~   79 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFF--IHTE------------EWDDQI--LLDKKKN----IEISCNLNLATCYNK   79 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCT------------TCCCHH--HHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cchh------------hhhhHH--HHHhhhh----HHHHHHhhHHHHHHH
Confidence            3444556778888888888888776531  1000            000000  0000000    012355566666666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          286 EGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       286 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      .|++++|++.++..++..+. +..+|..+..+|...|++++|+..|++..+.
T Consensus        80 l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          80 NKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66777776666666665433 5566666666666777777777766666654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.72  E-value=0.00019  Score=59.37  Aligned_cols=122  Identities=7%  Similarity=-0.102  Sum_probs=62.3

Q ss_pred             HHHHHHHHhCCChhHHhHHHHHHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 006744          156 NALAYCLSRNNLFRAADQVPELMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVE  235 (632)
Q Consensus       156 ~~li~~~~~~~~~~~a~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  235 (632)
                      ......+.+.|+++.|...|.+..+......+.......... -+.+...|..+..++.+.|++++|+..+++.++.. +
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~-~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p  108 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKL-QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  108 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHh-ChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence            344556667777777777665543211111110000000000 01133345555666666666666666666666553 3


Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          236 ADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       236 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .+..+|..+..++...|++++|++.|++..+.... +..++..+.
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~  152 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELL  152 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            35556666666666666666666666666664332 334444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.70  E-value=0.00052  Score=56.51  Aligned_cols=63  Identities=14%  Similarity=0.025  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006744          521 YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKL  584 (632)
Q Consensus       521 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  584 (632)
                      |+.+..+|.+.|++++|+..+++..+.. +.+...|..+..++...|++++|.+.|+++.+.++
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4445556666777777777777766653 55666777777777777777777777777776543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=0.00058  Score=56.67  Aligned_cols=117  Identities=15%  Similarity=0.145  Sum_probs=80.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH--HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHcC
Q 006744          455 QCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEI--DAAMMLVRDCLGNVASGPTEFKYALTILHVCRSG  532 (632)
Q Consensus       455 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  532 (632)
                      ......|++++|.+.|...++.--. +...      .+ ..+.+  .++..+-..         ....+..+...+...|
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG-~~l~------~~-~~~~w~~~~r~~l~~~---------~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRG-PVLD------DL-RDFQFVEPFATALVED---------KVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCS-STTG------GG-TTSTTHHHHHHHHHHH---------HHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcc-cccc------cC-cchHHHHHHHHHHHHH---------HHHHHHHHHHHHHHCC
Confidence            4567788888888888888764210 0000      00 00100  111111111         1234556888899999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCCC
Q 006744          533 EAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLR-----ERKLLTEAN  589 (632)
Q Consensus       533 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~~~~~~~~  589 (632)
                      ++++|+..++++.+.. +-+...|..++.+|.+.|+.++|++.|+++.     +.|+.|.+.
T Consensus        82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            9999999999999874 7788999999999999999999999999984     468888543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=0.00033  Score=54.62  Aligned_cols=96  Identities=13%  Similarity=0.102  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCc-----cc-HHhHHHH
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGIL-----ID-RAIYGVL  279 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~-~~~~~~l  279 (632)
                      +..+...+.+.|++++|++.|++.++.+ +.+...|..+..+|.+.|++++|++.++++++....     +. ..+|..+
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            3445566777777777777777776654 345666777777777777777777777776653211     00 1345556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 006744          280 IEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       280 i~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      ...+...+++++|++.|+.....
T Consensus        86 g~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          86 GNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhc
Confidence            66666666777777777665543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.5e-05  Score=77.74  Aligned_cols=96  Identities=6%  Similarity=-0.127  Sum_probs=35.5

Q ss_pred             ChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 006744          411 SVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTK  490 (632)
Q Consensus       411 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~  490 (632)
                      +...+..+...+.+.|+.++|...+.......  + ..++..+...+...|++++|...|++..+.. +-+...|+.|..
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~  194 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI  194 (497)
T ss_dssp             ------------------------CCHHHHHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence            33444455555555555555554444333211  1 1334444555555555555555555555532 123445555555


Q ss_pred             HHHhcCCHHHHHHHHHHHhh
Q 006744          491 GLCKIGEIDAAMMLVRDCLG  510 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~  510 (632)
                      .+...|+..+|+..|.+.+.
T Consensus       195 ~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         195 LASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHHHh
Confidence            55555555555555555543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.62  E-value=0.0004  Score=57.36  Aligned_cols=64  Identities=9%  Similarity=-0.040  Sum_probs=41.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          273 RAIYGVLIEGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       273 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      ...|..+..+|.+.|++++|+..+++.++.... +..+|..+..+|.+.|++++|+..|++..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345556666666777777777777776665443 5566666667777777777777777766654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.55  E-value=0.00075  Score=55.50  Aligned_cols=107  Identities=8%  Similarity=-0.085  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhC---CCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHH
Q 006744          206 YTAMIRVLAAERNLDACLRVWEEMKKD---LVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEG  282 (632)
Q Consensus       206 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  282 (632)
                      +.-....+.+.|++++|+..|++....   ....+.                 .-......+       ...+|+.+..+
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~-----------------~~~~~~~~~-------~~~~~~Nla~~   73 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSE-----------------KESKASESF-------LLAAFLNLAMC   73 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH-----------------HHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccch-----------------hhhhhcchh-------HHHHHHhHHHH
Confidence            444566677888888888888765431   000000                 000000110       12244455555


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          283 LVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       283 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      |.+.|++++|+..++......+. +..+|..+..+|...|++++|+..|++..+.
T Consensus        74 ~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          74 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            56666666666666665554432 4555555566666666666666666665543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.53  E-value=0.00086  Score=55.59  Aligned_cols=59  Identities=17%  Similarity=0.090  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 006744          205 AYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREM  264 (632)
Q Consensus       205 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  264 (632)
                      .+..+...+.+.|++++|+..++++.+.. +-+...|..++.+|.+.|+..+|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34555555555666666666665555543 335555555666666666666666555554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=5.3e-05  Score=75.31  Aligned_cols=228  Identities=7%  Similarity=-0.068  Sum_probs=124.1

Q ss_pred             HHHHHHHHHHhCCCCcC-HHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          221 ACLRVWEEMKKDLVEAD-VMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKACDLLKDL  299 (632)
Q Consensus       221 ~A~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  299 (632)
                      +|.+.|++..+.  +|| ...+..+..++...|++++|   |++++..++. ....++... .+. ...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~-~Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQ-DLW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHH-HHH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHH-HHH-HHHHHHHHHHHHHh
Confidence            677888887764  344 44566677777777777765   6666654221 111121111 111 11234566677766


Q ss_pred             HHCCCCCCHhhHHHHHHH--HHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCcc
Q 006744          300 VDSGYRADLGIYNSIIGG--LCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVA  377 (632)
Q Consensus       300 ~~~g~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  377 (632)
                      .+....++..-....+..  +...+.++.|+..+....+.. .++...+..+...+.+.|+.+.|...+.......   .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence            654333333322222222  222344555555444333221 2244556667777888888888888777655432   1


Q ss_pred             ccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 006744          378 ADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSLSFSIAIQCH  457 (632)
Q Consensus       378 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~  457 (632)
                      ...+..+..++...|++++|...|++..+..+.+...|+.|...+...|+..+|...|.+..... +|-..++..|...+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            24556677788889999999999999999888888999999999999999999999999988765 56777777777766


Q ss_pred             HHcC
Q 006744          458 VESG  461 (632)
Q Consensus       458 ~~~g  461 (632)
                      .+..
T Consensus       231 ~~~~  234 (497)
T d1ya0a1         231 SKAL  234 (497)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            5543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.47  E-value=0.00011  Score=65.63  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=37.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 006744          177 LMDSQGRIAEMLEILEKMRRNLCKPDVFAYTAMIRVLAAERNLDACLRVWEEMKKD  232 (632)
Q Consensus       177 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  232 (632)
                      .+.+.|++++|+..+++..+..+. |...+..+...|+..|++++|.+.|+...+.
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344566777777777776665432 6677777777777777777777777776654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.43  E-value=0.0013  Score=53.26  Aligned_cols=92  Identities=14%  Similarity=0.027  Sum_probs=58.1

Q ss_pred             HHHhcCCHHHHHHHHHHHhhcCCCCCh----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-----CCCCC---
Q 006744          491 GLCKIGEIDAAMMLVRDCLGNVASGPT----------EFKYALTILHVCRSGEAEKIIEVLNEMTQE-----GCPPN---  552 (632)
Q Consensus       491 ~~~~~g~~~~A~~~~~~~~~~~~~~p~----------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-----g~~p~---  552 (632)
                      .+...|++++|+..|++.++.....|+          ...|+.+..+|...|++++|++.+++..+.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666666543222221          245666666677777777777766665532     11111   


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          553 --EVICSAIISGMCKHGTLEEARKVFTNLRER  582 (632)
Q Consensus       553 --~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  582 (632)
                        ...|..+..+|...|++++|.+.|++..+.
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              225677888999999999999999997664

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.41  E-value=0.00015  Score=64.54  Aligned_cols=121  Identities=9%  Similarity=-0.075  Sum_probs=70.2

Q ss_pred             hhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCCCCcCHH-HHHHHHHHHHHcCCHHHHH
Q 006744          389 GKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLNLEVNSL-SFSIAIQCHVESGDILEAC  467 (632)
Q Consensus       389 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~g~~~~a~  467 (632)
                      .+.|++++|+..+++..+..+.+...+..+...|+..|++++|...|+...+.  .|+.. .+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHH
Confidence            45688888888888888888888888888888888888888888888888774  45433 3332322322222222111


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 006744          468 ECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGN  511 (632)
Q Consensus       468 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  511 (632)
                      .-.......+..++...+......+...|+.++|.++++++.+.
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            11000000011111223333345566667777777777766544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.38  E-value=0.00029  Score=56.34  Aligned_cols=107  Identities=13%  Similarity=0.061  Sum_probs=62.6

Q ss_pred             ccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhHHHHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHH
Q 006744          320 RVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDNFFKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALD  399 (632)
Q Consensus       320 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  399 (632)
                      +.+.+++|+..|+...+.... +...+..+..++...+++..+.+                         ..+.+++|+.
T Consensus         9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai~   62 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAIT   62 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHHH
Confidence            444566677777666654322 44455555555554444333322                         1244567888


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhcCC-----------hhhHHHHHHHHhhCCCCcCHHHHHHHH
Q 006744          400 VFEELKGKGYSSVPIYNILMGALLEIGE-----------VKKALYLFGKMRGLNLEVNSLSFSIAI  454 (632)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~li~~~~~~g~-----------~~~A~~~~~~m~~~~~~p~~~t~~~ll  454 (632)
                      .|++..+.++.+..+|..+..+|...|+           +++|.+.|++..+  +.|+...|...+
T Consensus        63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L  126 (145)
T d1zu2a1          63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL  126 (145)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHH
Confidence            8888888777788888888888876653           3455555555554  344444444333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.32  E-value=0.00052  Score=54.78  Aligned_cols=126  Identities=13%  Similarity=0.005  Sum_probs=63.1

Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHHHHHHhcCCHHHH
Q 006744          213 LAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLIEGLVGEGKVGKA  292 (632)
Q Consensus       213 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  292 (632)
                      |-+.+.+++|++.|+...+.. +-+..++..+..++...+++..+.+                         ..+.+++|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~A   60 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEA   60 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHH
Confidence            344555666666666666553 3345555555555554333222111                         11223445


Q ss_pred             HHHHHHHHHCCCCCCHhhHHHHHHHHHccC-----------CHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHhcCChhH
Q 006744          293 CDLLKDLVDSGYRADLGIYNSIIGGLCRVK-----------QFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAEMGRMDN  361 (632)
Q Consensus       293 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  361 (632)
                      +..|++.++..+. +..+|..+..+|...|           .+++|.+.|++..+.  .|+...|...+..+      .+
T Consensus        61 i~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~k  131 (145)
T d1zu2a1          61 ITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AK  131 (145)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HT
T ss_pred             HHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HH
Confidence            5555555554333 4445555555554432           356677777766653  45555555444433      34


Q ss_pred             HHHHHHHHHHCC
Q 006744          362 FFKLLAQMEKLK  373 (632)
Q Consensus       362 a~~~~~~~~~~~  373 (632)
                      +.+++.++.+.|
T Consensus       132 a~~~~~e~~k~~  143 (145)
T d1zu2a1         132 APQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHh
Confidence            555666555544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.96  E-value=0.035  Score=40.81  Aligned_cols=138  Identities=12%  Similarity=0.120  Sum_probs=67.7

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHhcHHHHHHHHHhcCChhHH
Q 006744          284 VGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQD-DLAPDFSTVNPLLVCCAEMGRMDNF  362 (632)
Q Consensus       284 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a  362 (632)
                      .-.|.+++..+++.+....   -+..-||.+|--....-+-+...++++.+-+. ++.| -.-...++.++...+..   
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~-C~Nlk~vv~C~~~~n~~---   85 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK-CQNLKSVVECGVINNTL---   85 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG-CSCTHHHHHHHHHTTCC---
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh-hhcHHHHHHHHHHhcch---
Confidence            3456666667766666654   24455566665555556666666666555432 1110 01223444555444432   


Q ss_pred             HHHHHHHHHCCCCccccHHHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHHHHHhhCC
Q 006744          363 FKLLAQMEKLKFSVAADLEKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLFGKMRGLN  442 (632)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  442 (632)
                                     ...+...+....+.|+-+...++++.+.+.+..++...-.+..+|-+.|...++-+++.+..+.|
T Consensus        86 ---------------se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          86 ---------------NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             ---------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence                           12222333333444555555555555444444455555555555555555555555555555555


Q ss_pred             C
Q 006744          443 L  443 (632)
Q Consensus       443 ~  443 (632)
                      +
T Consensus       151 ~  151 (161)
T d1wy6a1         151 E  151 (161)
T ss_dssp             C
T ss_pred             H
Confidence            3

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.84  E-value=0.0043  Score=49.98  Aligned_cols=64  Identities=11%  Similarity=0.062  Sum_probs=40.3

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006744          483 AAYNCLTKGLCKIGEIDAAMMLVRDCLGN----VASGPT-----EFKYALTILHVCRSGEAEKIIEVLNEMTQ  546 (632)
Q Consensus       483 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  546 (632)
                      ..|+.+..+|.+.|++++|...+++.+..    ....++     ...|..+..+|...|++++|++.|++..+
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666677777777777777777665532    111111     12355567777788888888888877664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0097  Score=42.91  Aligned_cols=29  Identities=17%  Similarity=0.233  Sum_probs=13.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006744          555 ICSAIISGMCKHGTLEEARKVFTNLRERK  583 (632)
Q Consensus       555 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  583 (632)
                      ++..|..++.+.|++++|++.++++++.+
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            44444444444444444444444444443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.028  Score=40.31  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=12.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006744          275 IYGVLIEGLVGEGKVGKACDLLKDLVDS  302 (632)
Q Consensus       275 ~~~~li~~~~~~g~~~~a~~~~~~m~~~  302 (632)
                      ++..|..+|.+.|++++|+..++++.+.
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3444444444444444444444444443

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.74  E-value=0.23  Score=36.42  Aligned_cols=66  Identities=14%  Similarity=0.146  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          519 FKYALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       519 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      ..++..++.+..+|+-+.-.++++.+.+.+ ++++...-.+..+|.+.|+..++-+++.+.-++|+.
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            344456777788899999999999988765 889999999999999999999999999999999874

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.65  E-value=0.19  Score=38.35  Aligned_cols=82  Identities=6%  Similarity=-0.109  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 006744          496 GEIDAAMMLVRDCLGNVASGPTEFKYALTILHVCR----SGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCK----HG  567 (632)
Q Consensus       496 g~~~~A~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g  567 (632)
                      .+.++|++++++..+..    +......|...|..    ..+.++|+++|++..+.|   ++.....|...|..    ..
T Consensus        37 ~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~  109 (133)
T d1klxa_          37 INKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK  109 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             cCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence            45566666666655431    22222234444433    346777777777777776   34445556555554    45


Q ss_pred             CHHHHHHHHHHHHHCCC
Q 006744          568 TLEEARKVFTNLRERKL  584 (632)
Q Consensus       568 ~~~~A~~~~~~m~~~~~  584 (632)
                      +.++|.++|++..+.|.
T Consensus       110 d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         110 NEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHCCC
Confidence            77788888888777764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.36  E-value=0.32  Score=37.04  Aligned_cols=14  Identities=36%  Similarity=0.562  Sum_probs=6.0

Q ss_pred             hhhHHHHHHHHhhC
Q 006744          428 VKKALYLFGKMRGL  441 (632)
Q Consensus       428 ~~~A~~~~~~m~~~  441 (632)
                      .++|.++|++..+.
T Consensus        75 ~~~A~~~~~~aa~~   88 (133)
T d1klxa_          75 LRKAAQYYSKACGL   88 (133)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             hHHHHHHHhhhhcc
Confidence            34444444444433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.35  E-value=0.15  Score=37.87  Aligned_cols=69  Identities=14%  Similarity=0.096  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006744          516 PTEFKYALTILHVCRSG---EAEKIIEVLNEMTQEGCPPNE-VICSAIISGMCKHGTLEEARKVFTNLRERKLL  585 (632)
Q Consensus       516 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~  585 (632)
                      +...+--...+++.++.   +.++++.+|++..+.+ +.+. ..+-.|.-+|.+.|++++|+++++.+++..+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            44444333666666653   4568888888887653 3343 46667778888999999999999999888654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=3.6  Score=38.58  Aligned_cols=25  Identities=8%  Similarity=-0.117  Sum_probs=12.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHhC
Q 006744          313 SIIGGLCRVKQFDKAYKLFEVTVQD  337 (632)
Q Consensus       313 ~li~~~~~~g~~~~A~~~~~~m~~~  337 (632)
                      ....+....|+.++|...+..+-..
T Consensus       107 ~~~~A~~~~g~~~~a~~~~~~lW~~  131 (450)
T d1qsaa1         107 NYYYAKWNTGQSEEAWQGAKELWLT  131 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhc
Confidence            3444455555555555555444433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.11  E-value=1.9  Score=31.64  Aligned_cols=47  Identities=9%  Similarity=0.138  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006744          290 GKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQ  336 (632)
Q Consensus       290 ~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  336 (632)
                      ++++.+|+++...+..-....+..|.-+|.+.|++++|.+.++.+++
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34444444444332111122333444445555555555555555444

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=82.96  E-value=18  Score=33.40  Aligned_cols=331  Identities=9%  Similarity=-0.011  Sum_probs=156.5

Q ss_pred             cCHHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCcCHHhHHHHHHHHHhcCChhHHHHHHHHHHHcCCcccHHhHHHHH
Q 006744          201 PDVFAYTAMIRVLAAERNLDACLRVWEEMKKDLVEADVMAYVTLIMGLCKGGRVVRGHELFREMKENGILIDRAIYGVLI  280 (632)
Q Consensus       201 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  280 (632)
                      .+...-.....+....|+.++|.+.+..+-..|. -..                +.+..+|..+.+.|.. +...+-.-+
T Consensus       100 ~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p----------------~~c~~l~~~~~~~~~l-t~~~~~~R~  161 (450)
T d1qsaa1         100 GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQP----------------NACDKLFSVWRASGKQ-DPLAYLERI  161 (450)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCC----------------THHHHHHHHHHHTTCS-CHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCc----------------hHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence            3455445666777777888777777766654441 112                2222333333333322 333333334


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHhcHHHHHHHHHh--cCC
Q 006744          281 EGLVGEGKVGKACDLLKDLVDSGYRADLGIYNSIIGGLCRVKQFDKAYKLFEVTVQDDLAPDFSTVNPLLVCCAE--MGR  358 (632)
Q Consensus       281 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~  358 (632)
                      ......|+...|..+...+...    .......++........+.   ....   ..  ..+......+..++.+  ..+
T Consensus       162 ~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~---~~~~---~~--~~~~~~~~~~~~~l~rla~~d  229 (450)
T d1qsaa1         162 RLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVL---TFAR---TT--GATDFTRQMAAVAFASVARQD  229 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHH---HHHH---HS--CCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHH---HHHh---cC--CCChhhhHHHHHHHHHHhccC
Confidence            4444555666555554433211    2222333333332222211   1111   11  1122222222222222  235


Q ss_pred             hhHHHHHHHHHHHCCCCccccH---HHHHHHHhhhcccHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChhhHHHHH
Q 006744          359 MDNFFKLLAQMEKLKFSVAADL---EKFFEFLVGKEERIMMALDVFEELKGKGYSSVPIYNILMGALLEIGEVKKALYLF  435 (632)
Q Consensus       359 ~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  435 (632)
                      .+.+..++..............   ...+.......+..+.+...+......... .....-.+......+++..+...+
T Consensus       230 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~w~~~~al~~~~~~~~~~~~  308 (450)
T d1qsaa1         230 AENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWL  308 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccc-hHHHHHHHHHHHHcCChHHHHHHH
Confidence            5556666655544322211111   111222223445566666666665554432 222333444455667888888888


Q ss_pred             HHHhhCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 006744          436 GKMRGLNLEVNSLSFSIAIQCHVESGDILEACECHNKIIEMSQVPSVAAYNCLTKGLCKIGEIDAAMMLVRDCLGNVASG  515 (632)
Q Consensus       436 ~~m~~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  515 (632)
                      ..|.... .-...-.-=+..++...|+.+.|..+|..+...   ++  -|..|...  +.|..-   .+-   .......
T Consensus       309 ~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~---~~~---~~~~~~~  374 (450)
T d1qsaa1         309 ARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAAQ--RIGEEY---ELK---IDKAPQN  374 (450)
T ss_dssp             HHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHHH--HTTCCC---CCC---CCCCCSC
T ss_pred             HhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHHH--HcCCCC---CCC---cCCCCcc
Confidence            7775432 122233334456777888888888888877642   22  33333211  122100   000   0000000


Q ss_pred             Ch-HHH---HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006744          516 PT-EFK---YALTILHVCRSGEAEKIIEVLNEMTQEGCPPNEVICSAIISGMCKHGTLEEARKVFTNL  579 (632)
Q Consensus       516 p~-~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~m  579 (632)
                      +. ...   -...+..+...|....|...|..+...   .+......+.....+.|.++.|+......
T Consensus       375 ~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHH
Confidence            10 000   012355566778888888888887754   24556667777778888888888776555