Citrus Sinensis ID: 006828

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
Protein Sequence
MAKKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFWTVVSSATTIFAAASVAYIARIR
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
makkkatqktndaneanpqeqknnqnltqgKTVALThrnsmedpseQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYgrlkkeknerdgDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCqsendidgqqELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFWTVVSSATTIFAAASVAYIARIR
Flexible Loop (DISEMBL)
makkkatqktndaneanpqeqknnqnltqGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKsevsglmgniENERERLSQACREKDlmkgeldcqvkeasrlkdrliemegkernlrseilvlqsdygrlkkeknerdgdieafkkekgllgkrlvgleketddlklKIKVIVkeknaiemqnseqkviNDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLieekdeishrlekavvvlddkegEIAKLlrekndieerkvcqdneisglhkeigELRDVVFKLKASCRDQQDKSKQLVNELADYKSaldqatlerdnawkdldeqRKSGMDLRLKLSEMEKRFEEKVEelaktrneretlvDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQnsveaqkkkSFWTVVSSATTIFAAASVAYIARIR
Low Complexity Region (SEG)
MAKKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETddlklkikvivkEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSemekrfeekveeLAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFWTVVSSATTIFAAASVAYIARIR
Disordered region (IsUnstruct)
************************************************************************************LFG*****************VSLEIEKGLFCVFLMTQ*********************************************************************************ILVL*************************GLLGKRLVGLEKETDDLKLKIKVIVKEKNAI*************LEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALL**********************RLEKAVVVLDDKEGEIAKLLR****I**RKVCQDNEISGLHKEIGELRDVVFKLKAS************************************************************************************************************************************MVC***********************DQYAAEFQAIVNAFRNREKLVEDMKHRVEL********KKKSFWTVVSSATTIFAAASVAYIAR**
Disordered Region (DISOPRED)
************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************ATTIFAAASVAYIARI*
Disordered Region (DISEMBL)
**********************NNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRS************AKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMG*********RENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFWTVVSSATTIFAAASVAYIARIR
Disordered Region (DISPRO)
**********NDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFWTVVSSATTIFAAASVAYIARIR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRxxxxxxxxxxxxxxxxxxxxxLSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNxxxxxxxxxxxxxxxxxxxxxLDCQVKExxxxxxxxxxxxxxxxxxxxxILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEKVLCGKILELENSCSEAMDEKLEMVLExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxISGLHKEIGELRDVVFKLKASxxxxxxxxxxxxxxxxxxxxxxxxxxxxRDNAWKDLDEQRKSGMDLRLKxxxxxxxxxxxxxxxxxxxxxRETLVDLRKKMESHxxxxxxxxxxxxxxxxxxxxxxxxxxxxMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLxxxxxxxxxxxxxxxxxxxxxSFWTVVSSATTIFAAASVAYIARIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
255542496	622	Ubiquitin-protein ligase BRE1A, putative	0.982	0.993	0.483	1e-133
224131430	626	predicted protein [Populus trichocarpa]	0.949	0.953	0.480	1e-130
225451092	613	PREDICTED: uncharacterized protein LOC10	0.969	0.995	0.420	1e-100
15240907	628	Prefoldin chaperone subunit family prote	0.984	0.985	0.390	9e-91
15229907	634	uncharacterized protein [Arabidopsis tha	0.963	0.955	0.383	5e-87
224123266	327	predicted protein [Populus trichocarpa]	0.516	0.993	0.484	2e-73
62318763	510	glutamic acid-rich protein [Arabidopsis	0.774	0.954	0.380	3e-59
91805491	490	unknown [Arabidopsis thaliana]	0.596	0.765	0.373	3e-48
62319692	150	glutamic acid-rich protein [Arabidopsis	0.236	0.993	0.411	3e-22
449483063	520	PREDICTED: uncharacterized protein LOC10	0.647	0.782	0.295	4e-22

>gi|255542496|ref|XP_002512311.1| Ubiquitin-protein ligase BRE1A, putative [Ricinus communis] gi|223548272|gb|EEF49763.1| Ubiquitin-protein ligase BRE1A, putative [Ricinus communis]

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 306/633 (48%), Positives = 431/633 (68%), Gaps = 15/633 (2%)

Query: 1   MAKKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVH 60
           MAKKK T ++    + NPQ+Q  N NL      A    +SMEDP ++++ LKSLN +L+ 
Sbjct: 1   MAKKKLTHQSQHPKQQNPQDQ--NPNL------AHPQNSSMEDPEDKLQNLKSLNAMLLK 52

Query: 61  RSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT 120
            + E+RQQVESL++AK  LE++L L G EK +L  ELS  S+++VSLEIEKGLF VF+ T
Sbjct: 53  ETLERRQQVESLTEAKKVLESQLGLIGKEKMDLENELSVVSEERVSLEIEKGLFRVFIET 112

Query: 121 QMKEMG---EGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC 177
           Q+ +MG   E L +EK ERENEI  LK+EV+ L+ ++E+ERE+LS ACRE+D++   LD 
Sbjct: 113 QVDDMGFVVEKLVKEKEERENEIGLLKNEVNQLIVDVESEREKLSLACRERDVLSINLDN 172

Query: 178 QVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKR 237
              EA+ LK ++ +ME KE+N   EI+ ++    +L K+  E +  IE  KK + L   +
Sbjct: 173 WKNEANALKKKVTDMEDKEKNAEEEIMKVKVHCSQLIKQNQEIEKQIEEAKKLRDLAEIK 232

Query: 238 LVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVL 297
           L    KE +DL   +  IV++ N IE +   Q+V   ELEK+V+ LNEIV +L+KEE VL
Sbjct: 233 LGEKVKELEDLNRDMAEIVRKNNEIEREKGGQRVRISELEKDVSNLNEIVSSLRKEEDVL 292

Query: 298 CGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVL 357
            G +LELE S  EA+++   M +EI AL ++++EK++ IE L+EE D     ++   + +
Sbjct: 293 RGTVLELEKSYGEAIEKVNVMAMEIDALAEEKKEKERTIEMLMEETDSSEKLVKNLNIAM 352

Query: 358 DDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLV 417
            DK+G I KLLR+K +IE+ KV +++EI  LHKE+  LRD VF  + S ++Q+DK+KQLV
Sbjct: 353 MDKDGLIEKLLRQKKEIEDVKVSKESEIVQLHKELCGLRDAVFVTQDSIKNQEDKNKQLV 412

Query: 418 NELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERE 477
            E+  Y+   +QA LERDNA ++LDE++K+G +L  K+ EMEK  EE V+E AK + E E
Sbjct: 413 TEVNHYRDEYEQARLERDNAVRNLDEEKKNGFNLTSKVLEMEKMIEETVKEFAKMKTEYE 472

Query: 478 TLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAA 537
            L++L+K+ME  +  L +EK++MQKN L+A+R  D LR K+ES+G NSDRAL+MLK T A
Sbjct: 473 NLLELKKEMEGQVSSLMKEKDMMQKNFLDAEREIDALRTKLESVGINSDRALAMLKKTVA 532

Query: 538 MVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNS 597
            VC S    DG+++  + EKKL GE + + AE + I NAFRNRE +VE+MK +VE +QNS
Sbjct: 533 FVCPSN---DGKEKASITEKKLDGEIEPFVAELEIIKNAFRNRETVVEEMKQQVEFLQNS 589

Query: 598 -VEAQKKKSFWTVVSSATTIFAAASVAYIARIR 629
             EAQKKK  W VVSSATT  AAAS+AY AR+R
Sbjct: 590 EAEAQKKKGIWAVVSSATTFLAAASLAYAARMR 622

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131430|ref|XP_002328537.1| predicted protein [Populus trichocarpa] gi|222838252|gb|EEE76617.1| predicted protein [Populus trichocarpa]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 292/608 (48%), Positives = 417/608 (68%), Gaps = 11/608 (1%)

Query: 1   MAKKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVH 60
           MAKKK   +T D  + NP++Q  NQNLT   T     + SMEDP ++ + LK++NDLLV 
Sbjct: 1   MAKKKVIHQTQDPEQQNPRDQ--NQNLT---TQHQHQQPSMEDPDDKFQSLKTVNDLLVK 55

Query: 61  RSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT 120
            + ++RQQVESL +AK ALE EL+L+  EKSEL +EL   SD +VSLEIEK LFCVF+ T
Sbjct: 56  EAKQRRQQVESLVKAKEALETELALYCKEKSELESELGKISDGRVSLEIEKALFCVFIET 115

Query: 121 QMKEMG---EGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC 177
           +M EMG   +GL  EK  ++NEI AL+SEV GL+ N+E ER+RLS+  RE+DL+K ++D 
Sbjct: 116 RMVEMGSFVDGLVREKRGKDNEIGALESEVKGLVMNVETERDRLSRVYRERDLLKSDVDN 175

Query: 178 QVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKR 237
            +K A  LKD ++E+E  ER    EI  L   Y  L KE  + + +IE  ++ +GL    
Sbjct: 176 WMKGADGLKDSVVELEKMEREGEEEIEKLYKQYALLDKEMKDGEKEIEELQRLRGLAENN 235

Query: 238 LVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVL 297
           LV    E +DLK +I  I KE+N I  + SEQKV   ELE++  +L+EIV +LQKE+ VL
Sbjct: 236 LVEKVNEIEDLKREIGRIEKERNEIAGEKSEQKVKIGELERKAGELDEIVSSLQKEKGVL 295

Query: 298 CGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVL 357
            GK +ELE S   A++++  MV EI  L+++++EK++ I RL+EEKD+       A   +
Sbjct: 296 SGKAMELEKSLGLALEKENAMVREIDGLMEEKKEKERTIVRLMEEKDDDCKYKIMAYAEI 355

Query: 358 DDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLV 417
           +DK+G I +LLREKN+IEE KV ++ EI  LH+E+G+LR  +F ++ S +D++DK+KQ+V
Sbjct: 356 EDKKGLIEELLREKNEIEEVKVIKEGEIVKLHEEVGQLRGDIFSMQESIKDREDKNKQVV 415

Query: 418 NELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERE 477
           +E + YK A ++  LERD A K L E+RK+ M+LR K+ EMEKR EE VEE AK +NE E
Sbjct: 416 SEASHYKDAFEKVRLERDTAQKSLGEERKNAMNLRSKVLEMEKRVEETVEERAKMKNEHE 475

Query: 478 TLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAA 537
           +LV  +K+MES +  L +EK+L+QK+  EA+R  D+LR K+ES G N DRAL+MLKNTAA
Sbjct: 476 SLVSQKKEMESQVATLEKEKDLLQKHFTEAERKIDELRTKIESAGTNYDRALAMLKNTAA 535

Query: 538 MVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNS 597
           ++C+S N    +++++V EK L GE + YA++ + I  AF N++ +VE+MK ++E +QNS
Sbjct: 536 LLCESNN---VKEDMIVTEKMLNGEIEPYASKLEVIKTAFSNKQTVVEEMKQQLEFLQNS 592

Query: 598 VEAQKKKS 605
           V    KK+
Sbjct: 593 VAKADKKN 600

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225451092|ref|XP_002264214.1| PREDICTED: uncharacterized protein LOC100262311 [Vitis vinifera] gi|298205014|emb|CBI34321.3| unnamed protein product [Vitis vinifera]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 264/628 (42%), Positives = 405/628 (64%), Gaps = 18/628 (2%)

Query: 1   MAKKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVH 60
           MAKKKA    N+ ++   Q Q    + T            MEDPSE+++ LKSLN LL+ 
Sbjct: 1   MAKKKA----NNQDKTTQQHQDPTDHDT----------TPMEDPSEKLQNLKSLNSLLLK 46

Query: 61  RSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT 120
            + E+RQQVESL Q++ ALE+ELS F +EK  L  EL    +Q + LE+EK +  +F+ T
Sbjct: 47  ETFERRQQVESLQQSREALESELSRFAMEKKILDDELKQLREQTMGLELEKSVMGLFVET 106

Query: 121 QMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVK 180
           Q+ ++     EE  + ++EI  LK +V+ +MGN+E +R  L     E+D M+ E D   +
Sbjct: 107 QIDDLRR---EEGEKVKSEIEVLKEKVNEVMGNLEKQRLLLDHVSGERDGMRSERDFWAE 163

Query: 181 EASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVG 240
           EA+RL+ +++EMEG+E+    ++ VLQ +   L +EK ++D  IE+ K +K L+ +RL  
Sbjct: 164 EANRLRLKVVEMEGREKKSEEKVSVLQMECEVLIEEKEKKDESIESLKIDKDLVERRLAE 223

Query: 241 LEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGK 300
             +  DDLK KI+ IV +K  IE + S Q V+ +EL+KEV +LNE   AL KE++ L  K
Sbjct: 224 SVRLNDDLKAKIEAIVSDKEGIEKERSAQMVLINELKKEVGELNENRCALLKEQEDLRIK 283

Query: 301 ILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDK 360
           + ELE +  EA +++ +M +E   L+ ++ E +KR+E L+ EK      LE A   L+ +
Sbjct: 284 VCELEKNLVEAKEKQEKMEMESNTLISEKNEMEKRLESLMGEKVSTMKSLEDAQKQLEVQ 343

Query: 361 EGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNEL 420
           + ++ ++L EKN IEE K  Q++EI  L K++ EL D + KL+    +  +K+KQL +E 
Sbjct: 344 KQKVEEILSEKNAIEEVKFKQESEIVELQKDVRELVDALSKLEKKFGEIAEKNKQLQSEA 403

Query: 421 ADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLV 480
             Y+ AL+Q T+ERD+  K L E++KSG +LR K+ E+EK  EE ++EL + + + E L+
Sbjct: 404 THYRDALNQITVERDDVKKGLAEEKKSGDNLRTKVVEVEKNTEETLKELEQMKRDHEKLI 463

Query: 481 DLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVC 540
             +K+++S   +L  EK   +KNL+EA++  DD+R K+ES+  NS+ AL+MLKNT A+VC
Sbjct: 464 GEKKELQSLYEMLKGEKASAEKNLVEAQQGIDDMRGKVESMLANSELALAMLKNTGALVC 523

Query: 541 QSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV-E 599
            S+++ +G+QE  V E+  + ET  +AA+ + I NAFR+RE  VEDMK +VE +Q ++ E
Sbjct: 524 PSKDENNGKQEEGVYEQNTKEETQPFAAQLEVIKNAFRSRETEVEDMKRQVETLQKTLAE 583

Query: 600 AQKKKSFWTVVSSATTIFAAASVAYIAR 627
           A KK++FWT+VSSATTIFAAAS AY+A+
Sbjct: 584 AHKKRNFWTLVSSATTIFAAASFAYVAK 611

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240907|ref|NP_198085.1| Prefoldin chaperone subunit family protein [Arabidopsis thaliana] gi|332006290|gb|AED93673.1| Prefoldin chaperone subunit family protein [Arabidopsis thaliana]

 Score =  340 bits (873), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 249/638 (39%), Positives = 389/638 (60%), Gaps = 19/638 (2%)

Query: 1   MAKKKATQKTNDANEANPQEQKNNQNL--TQGKTVALTHRNSMED---PSEQIKRLKSLN 55
           MAKKK ++ +N A  +N Q+Q  NQ++  T  K+  L+  +SMED     E+ + LKSLN
Sbjct: 1   MAKKKVSRNSNGA--SNEQQQIQNQSVPVTSQKSTKLSRESSMEDHDSSEEKFQNLKSLN 58

Query: 56  DLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFC 115
            +L+ ++ E+RQQ+ESL QAK +LE EL   G EK+ L  EL G SD+   L+IE  L  
Sbjct: 59  AILLKQTMEKRQQIESLFQAKDSLEIELVRSGKEKTLLREELCGSSDENFMLKIEMDLLM 118

Query: 116 VFLMTQMKEMGEGLD---EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMK 172
            F+  ++KEMG  +D   +EK++RE EI  LK E +GL+  +E+ERE  S+ C E+DL+K
Sbjct: 119 GFVEGRVKEMGVEVDWLFKEKSDRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVK 178

Query: 173 GELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKG 232
              D Q +E + LK+ ++ +E +E +L  E+  L+ + GRL KE+ +R+  IE   +E+ 
Sbjct: 179 SGFDLQSEEMNLLKESVVRLEMREVSLGEEVGRLKCENGRLVKERKKREEVIERGNRERS 238

Query: 233 LLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQK 292
            L + L    +E D LK +I+ +VKEK  +EM   +Q+ +  ELEK++  +NEIV +L K
Sbjct: 239 ELVESLEEKVREIDVLKREIEGVVKEKMEVEMVRRDQREMIVELEKKLGDMNEIVESLTK 298

Query: 293 EEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEK 352
           E + L G+++ LE S  E  +E      +I  L+ ++  K+  +E L+ E + I   +E 
Sbjct: 299 EREGLRGQVVGLEKSLDEVTEEAKARAEQINELVKEKTVKESELEGLMVENNSIKKEIEM 358

Query: 353 AVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDK 412
           A+V   DKE  + +LLREKN++ +R V Q+ EI  L K  GE +  V +L+    DQ   
Sbjct: 359 AMVQFSDKEKLVEQLLREKNELVQRVVNQEAEIVELSKLAGEQKHAVAQLRKDYNDQIKN 418

Query: 413 SKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKT 472
            ++L   ++  K AL    +ERDNA K LDE++++ + L+ K+  +EK  E   +EL K 
Sbjct: 419 GEKLNCNVSQLKDALALVEVERDNAGKALDEEKRNMVALKEKVVALEKTNEATGKELEKI 478

Query: 473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSML 532
           + ER  L+  +K++E+    L  EK ++QK+++E KR    L+ ++ES G N+ ++L+ML
Sbjct: 479 KAERGRLIKEKKELENRSESLRNEKAILQKDIVELKRATGVLKTELESAGTNAKQSLTML 538

Query: 533 KNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVE 592
           K+ +++VC  EN          DEKK     D Y+ + +AI  AF+N+E +VE+MK  + 
Sbjct: 539 KSVSSLVCGIENK--------KDEKKRGKGMDSYSVQLEAIKKAFKNKESMVEEMKKELA 590

Query: 593 LMQNSVE-AQKKKSFWTVVSSATTIFAAASVAYIARIR 629
            M++SVE A KKKSFWT+VSS T++  AASVAY A ++
Sbjct: 591 KMKHSVEDAHKKKSFWTLVSSVTSLLMAASVAYAASLK 628

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229907|ref|NP_187164.1| uncharacterized protein [Arabidopsis thaliana] gi|6729023|gb|AAF27019.1|AC009177_9 hypothetical protein [Arabidopsis thaliana] gi|332640668|gb|AEE74189.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 242/631 (38%), Positives = 385/631 (61%), Gaps = 25/631 (3%)

Query: 1   MAKKKATQKTNDANEANPQEQKNNQNL-TQGKTVALTHRNSMED---PSEQIKRLKSLND 56
           MAKKKA++ +ND    N Q+Q + +   T  K   L+ ++SME+     EQ + LKSLN 
Sbjct: 1   MAKKKASRNSNDTANDNRQQQHDQKAPETDKKATVLSRQSSMEEHDSSEEQFQNLKSLNA 60

Query: 57  LLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCV 116
           +L+ ++ E+R Q++SL QAK  LE EL+ +  EK+ L  EL   SD+   L+ E     V
Sbjct: 61  MLLKQAMEKRNQIDSLVQAKDELETELARYCQEKTGLRDELDQVSDENFGLKFELDFVIV 120

Query: 117 FLMTQMKEMGEGLD---EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKG 173
           F+ +Q +EM  G+D   +EK++RE+EI  LK E   L G +E E+E+L + C E+DL+K 
Sbjct: 121 FVESQFREMCVGVDMLVKEKSDRESEIRVLKGEAIELTGKVEIEKEQLRKVCDERDLIKN 180

Query: 174 ELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGL 233
             D Q +E +RLK+ ++ +E KE NL   I  L+S+  RL KE+  R+ +IE  KKEK  
Sbjct: 181 GFDLQHEEVNRLKECVVRLEEKESNLEIVIGKLESENERLVKERKVREEEIEGVKKEK-- 238

Query: 234 LGKRLVGLEK-------ETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEI 286
                +GLEK       E D LK +IKV++ EKN +E+   EQK + +ELE++++KLNE 
Sbjct: 239 -----IGLEKIMEEKKNEIDGLKREIKVLLSEKNEMEIVKIEQKGVIEELERKLDKLNET 293

Query: 287 VLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEI 346
           V +L KEEKVL   ++ LE +  E+M+++  M++EI AL  +   K+  +ERLI EK+ I
Sbjct: 294 VRSLTKEEKVLRDLVIGLEKNLDESMEKESGMMVEIDALGKERTIKESEVERLIGEKNLI 353

Query: 347 SHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASC 406
             ++E   V   DK   I +L REK ++EER   ++ ++  L+++  EL   V  L+ +C
Sbjct: 354 EKQMEMLNVQSSDKGKLIDQLSREKVELEERIFSRERKLVELNRKADELTHAVAVLQKNC 413

Query: 407 RDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKV 466
            DQ   + +L  ++    +AL Q  L R+ A K LDE++++G DL+ ++ + EK   + +
Sbjct: 414 DDQTKINGKLSCKVDQLSNALAQVELRREEADKALDEEKRNGEDLKAEVLKSEKMVAKTL 473

Query: 467 EELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSD 526
           EEL K + ER++L   +  +ES    L  E   ++K L+E ++  + L+ ++ES G ++ 
Sbjct: 474 EELEKVKIERKSLFSAKNDLESQSESLKSENVKLEKELVELRKAMEALKTELESAGMDAK 533

Query: 527 RALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVED 586
           R++ MLK+ A+M+ Q EN  D    L+ +E+K +  T+ YA E ++I  AF+N+E ++E+
Sbjct: 534 RSMVMLKSAASMLSQLENRED---RLISEEQKREIGTEPYAMELESIEKAFKNKEDIIEE 590

Query: 587 MKHRVELMQNSV-EAQKKKSFWTVVSSATTI 616
           MK   E+M+ S  EA KK++FWT+VSS TT+
Sbjct: 591 MKKEAEIMKQSTEEAHKKQTFWTLVSSVTTV 621

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123266|ref|XP_002319036.1| predicted protein [Populus trichocarpa] gi|222857412|gb|EEE94959.1| predicted protein [Populus trichocarpa]

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 160/330 (48%), Positives = 234/330 (70%), Gaps = 5/330 (1%)

Query: 302 LELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKE 361
           ++LE +  EA+++K  M  EI  L+++++EK++ I RL+EE D        A   ++DK+
Sbjct: 1   MKLEETLGEALEKKNAMAREIDGLMEEKKEKERTIMRLMEENDAGQKYKIMANAEIEDKK 60

Query: 362 GEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA 421
           G + KLLREKN+IEE KV ++ EI  LHKE+G LRD +F ++ S +DQ+ K KQ+ +E++
Sbjct: 61  GLVQKLLREKNEIEEVKVIKEGEIEKLHKEVGHLRDDIFSMQESIKDQEVKYKQVASEIS 120

Query: 422 DYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVD 481
            YK AL+Q  LERDNA K LD +++ GM+LR K+ EMEKR EE V++ AK ++E E L  
Sbjct: 121 HYKGALEQVRLERDNAQKSLDGEKRIGMNLRSKVLEMEKRVEETVKDCAKMKSEHENLAK 180

Query: 482 LRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQ 541
            +K+ME+ + LL +EK+L+QK+L EA+    DLR KMES G  SDRAL+MLK+T A++C+
Sbjct: 181 QKKEMETQVSLLEKEKDLVQKHLTEAEGKIIDLRNKMESAGTISDRALTMLKSTVALLCE 240

Query: 542 SENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV-EA 600
           S N   G++E+ V EK L  E + YA+E + I  AFRN+E +VEDMK +VE +++SV  A
Sbjct: 241 SNN---GKEEMTVTEKMLDSEIEPYASELEVIKTAFRNKETMVEDMKQQVEYLRDSVARA 297

Query: 601 QKKKSFWTVVSSATTIFAAA-SVAYIARIR 629
           +KK    +V+SSATT+ AAA S+AY+AR+R
Sbjct: 298 KKKNGLLSVMSSATTVVAAAVSLAYVARVR 327

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62318763|dbj|BAD93796.1| glutamic acid-rich protein [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 189/497 (38%), Positives = 298/497 (59%), Gaps = 10/497 (2%)

Query: 1   MAKKKATQKTNDANEANPQEQKNNQNL--TQGKTVALTHRNSMED---PSEQIKRLKSLN 55
           MAKKK ++ +N A  +N Q+Q  NQ++  T  K+  L+  +SMED     E+ + LKSLN
Sbjct: 1   MAKKKVSRNSNGA--SNEQQQIQNQSVPVTSQKSTKLSRESSMEDHDSSEEKFQNLKSLN 58

Query: 56  DLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFC 115
            +L+ ++ E+RQQ+ESL QAK +LE EL   G EK+ L  EL G SD+   L+IE  L  
Sbjct: 59  AILLKQTMEKRQQIESLFQAKDSLEIELVRSGKEKTLLREELCGSSDENFMLKIEMDLLM 118

Query: 116 VFLMTQMKEMGEGLD---EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMK 172
            F+  ++KEMG  +D   +EK++RE EI  LK E +GL+  +E+ERE  S+ C E+DL+K
Sbjct: 119 GFVEGRVKEMGVEVDWLFKEKSDRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVK 178

Query: 173 GELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKG 232
              D Q +E + LK+ ++ +E +E +L  E+  L+ + GRL KE+ +R+  IE   +E+ 
Sbjct: 179 SGFDLQSEEMNLLKESVVRLEMREVSLGEEVGRLKCENGRLVKERKKREEVIERGNRERS 238

Query: 233 LLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQK 292
            L + L    +E D LK +I+ +VKEK  +EM   +Q+ +  ELEK++  +NEIV +L K
Sbjct: 239 ELVESLEEKVREIDVLKREIEGVVKEKMEVEMVRRDQREMIVELEKKLGDMNEIVESLTK 298

Query: 293 EEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEK 352
           E + L G+++ LE S  E  +E      +I  L+ ++  K+  +E L+ E + I   +E 
Sbjct: 299 EREGLRGQVVGLEKSLDEVTEEAKARAEQINELVKEKTVKESELEGLMVENNSIKKEIEM 358

Query: 353 AVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDK 412
           A+V   DKE  + +LLREKN++ +R V Q+ EI  L K  GE +  V +L+    DQ   
Sbjct: 359 AMVQFSDKEKLVEQLLREKNELVQRVVNQEAEIVELSKLAGEQKHAVAQLRKDYNDQIKN 418

Query: 413 SKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKT 472
            ++L   ++  K AL    +ERDNA K LDE++++ + L+ K+  +EK  E   +EL K 
Sbjct: 419 GEKLNCNVSQLKDALALVEVERDNAGKALDEEKRNMVALKEKVVALEKTNEATGKELEKI 478

Query: 473 RNERETLVDLRKKMESH 489
           + ER  L+  +K++E+ 
Sbjct: 479 KAERGRLIKEKKELENR 495

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|91805491|gb|ABE65474.1| unknown [Arabidopsis thaliana]

 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/386 (37%), Positives = 239/386 (61%), Gaps = 11/386 (2%)

Query: 239 VGLEK-------ETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQ 291
           +GLEK       E D LK +IKV++ EKN +E+   EQK + +ELE++++KLNE V +L 
Sbjct: 95  IGLEKIMEEKKNEIDGLKREIKVLLSEKNEMEIVKIEQKGVIEELERKLDKLNETVRSLT 154

Query: 292 KEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLE 351
           KEEKVL   ++ LE +  E+M+++  M++EI AL  +   K+  +ERLI EK+ I  ++E
Sbjct: 155 KEEKVLRDLVIGLEKNLDESMEKESGMMVEIDALGKERTIKESEVERLIGEKNLIEKQME 214

Query: 352 KAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQD 411
              V   DK   I +L REK ++EER   ++ ++  L+++  EL   V  L+ +C DQ  
Sbjct: 215 MLNVQSSDKGKLIDQLSREKVELEERIFSRERKLVELNRKADELTHAVAVLQKNCDDQTK 274

Query: 412 KSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAK 471
            + +L  ++    +AL Q  L R+ A K LDE++++G DL+ ++ + EK   + +EEL K
Sbjct: 275 INGKLSCKVDQLSNALAQVELRREEADKALDEEKRNGEDLKAEVLKSEKMVAKTLEELEK 334

Query: 472 TRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSM 531
            + ER++L   +  +ES    L  E   ++K L+E ++  + L+ ++ES G ++ R++ M
Sbjct: 335 VKIERKSLFSAKNDLESQSESLKSENVKLEKELVELRKAMEALKTELESAGMDAKRSMVM 394

Query: 532 LKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRV 591
           LK+ A+M+ Q EN  D    L+ +E+K +  T+ YA E ++I  AF+N+E ++E+MK   
Sbjct: 395 LKSAASMLSQLENRED---RLISEEQKREIGTEPYAMELESIEKAFKNKEDIIEEMKKEA 451

Query: 592 ELMQNSV-EAQKKKSFWTVVSSATTI 616
           E+M+ S  EA KK++FWT+VSS TT+
Sbjct: 452 EIMKQSTEEAHKKQTFWTLVSSVTTV 477

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62319692|dbj|BAD95232.1| glutamic acid-rich protein [Arabidopsis thaliana]

 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/158 (41%), Positives = 102/158 (64%), Gaps = 9/158 (5%)

Query: 473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSML 532
           + ER  L+  +K++E+    L  EK ++QK+++E KR    L+ ++ES G N+ ++L+ML
Sbjct: 1   KAERGRLIKEKKELENRSESLRNEKAILQKDIVELKRATGVLKTELESAGTNAKQSLTML 60

Query: 533 KNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVE 592
           K+ +++VC  EN          DEKK     D Y+ + +AI  AF+N+E +VE+MK  + 
Sbjct: 61  KSVSSLVCGIENK--------KDEKKRGKGMDSYSVQLEAIKKAFKNKESMVEEMKKELA 112

Query: 593 LMQNSVE-AQKKKSFWTVVSSATTIFAAASVAYIARIR 629
            M++SVE A KKKSFWT+VSS T++  AASVAY A ++
Sbjct: 113 KMKHSVEDAHKKKSFWTLVSSVTSLLMAASVAYAASLK 150

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449483063|ref|XP_004156483.1| PREDICTED: uncharacterized protein LOC101223388 [Cucumis sativus]

 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 139/471 (29%), Positives = 233/471 (49%), Gaps = 64/471 (13%)

Query: 1   MAKKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVH 60
           MAKKK T+   +  +  P  Q+   +  Q K+       +M+D S +++ LKSLN+ L+ 
Sbjct: 1   MAKKKPTRSAKELKQT-PNNQEETSDSEQPKS-------AMDDDS-KLQSLKSLNERLLK 51

Query: 61  RSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT 120
              E+R +V  L Q+K ALE +L     EK +++ ELS   D    LE+E+ + CV+L +
Sbjct: 52  EMVEKRVEVGDLVQSKEALELDLKRNVNEKEQVMGELSEARDGVYGLELERNVVCVYLQS 111

Query: 121 QMKEMGE---GLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC 177
           +++EMG    GL E +  +  EI  LK+E++GL+  +  ERE+    C E+D +K E D 
Sbjct: 112 RIQEMGGGICGLLESERVKGLEIRNLKAEITGLVSEVGEEREKWRGVCCERDEIKVEFDG 171

Query: 178 QVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERD-------GDIEAFKKE 230
            +KE   L+ +++EME  ER    EI  L+    +L  EK E +        D E  KK 
Sbjct: 172 LLKETGDLRGKVVEMERNERRALEEIDDLKGKCKKLLSEKKECEILNANLTKDNELIKKL 231

Query: 231 KGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLAL 290
               G+ +  LE++ D    +   I KEKN +EM+        ++LEKEV +L +    L
Sbjct: 232 LEESGRVIEDLERKVDVKMKEKGEIEKEKNGLEME-------VEKLEKEVTQLKQSTFCL 284

Query: 291 QKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRL 350
           ++E++    +I EL+    EA+ ++  M++E   L+   +E QK+               
Sbjct: 285 KQEKEENGMRIYELQMRNEEALVKESGMLMECDLLV---KELQKK--------------- 326

Query: 351 EKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQ 410
           EKA                    +EE K    N I  L KE  +L++ +  L       +
Sbjct: 327 EKA--------------------MEEAKTDAQNIIGDLQKESSKLKEAIASLTKMSDVGK 366

Query: 411 DKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKR 461
            ++++L+N++   +  LD+ + ERD+A K   ++++    L L L + E+R
Sbjct: 367 ARNEELINQIGRLRDTLDEVSFERDDARKRFGDEKEKVEKLSLLLKDKERR 417

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	629
TAIR|locus:2096334	634	AT3G05130 "AT3G05130" [Arabido	0.995	0.987	0.379	1.8e-101
TAIR|locus:2146440	628	AT5G27330 "AT5G27330" [Arabido	0.984	0.985	0.374	5e-99
DICTYBASE|DDB_G0287291	1738	abpD "interaptin" [Dictyosteli	0.848	0.307	0.222	6.8e-21
ZFIN|ZDB-GENE-030616-583	1376	acin1a "apoptotic chromatin co	0.914	0.417	0.257	4.6e-19
UNIPROTKB|G5E5V6	1293	LOC517509 "Uncharacterized pro	0.868	0.422	0.222	4.9e-17
ZFIN|ZDB-GENE-030616-162	1992	myh10 "myosin, heavy chain 10,	0.895	0.282	0.214	6.6e-17
UNIPROTKB|E2QV06	1295	CGNL1 "Uncharacterized protein	0.853	0.414	0.226	8.1e-17
UNIPROTKB|F1S2Y5	2576	CENPF "Uncharacterized protein	0.879	0.214	0.221	2.4e-16
DICTYBASE|DDB_G0286355	2116	mhcA "myosin heavy chain" [Dic	0.914	0.271	0.216	3.2e-16
DICTYBASE|DDB_G0272472	1508	DDB_G0272472 "putative actin b	0.774	0.322	0.238	3.4e-16

TAIR|locus:2096334 AT3G05130 "AT3G05130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
 Identities = 242/637 (37%), Positives = 378/637 (59%)

Query:     1 MAKKKATQKTND-ANEANPQEQKNNQNLTQGKTVALTHRNSME--DPSE-QIKRLKSLND 56
             MAKKKA++ +ND AN+   Q+       T  K   L+ ++SME  D SE Q + LKSLN 
Sbjct:     1 MAKKKASRNSNDTANDNRQQQHDQKAPETDKKATVLSRQSSMEEHDSSEEQFQNLKSLNA 60

Query:    57 LLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCV 116
             +L+ ++ E+R Q++SL QAK  LE EL+ +  EK+ L  EL   SD+   L+ E     V
Sbjct:    61 MLLKQAMEKRNQIDSLVQAKDELETELARYCQEKTGLRDELDQVSDENFGLKFELDFVIV 120

Query:   117 FLMTQMKEMGEGLD---EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKG 173
             F+ +Q +EM  G+D   +EK++RE+EI  LK E   L G +E E+E+L + C E+DL+K 
Sbjct:   121 FVESQFREMCVGVDMLVKEKSDRESEIRVLKGEAIELTGKVEIEKEQLRKVCDERDLIKN 180

Query:   174 ELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGL 233
               D Q +E +RLK+ ++ +E KE NL   I  L+S+  RL KE+  R+ +IE  KKEK  
Sbjct:   181 GFDLQHEEVNRLKECVVRLEEKESNLEIVIGKLESENERLVKERKVREEEIEGVKKEKIG 240

Query:   234 LGKRLVGLEKETXXXXXXXXXXXXEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKE 293
             L K +   + E             EKN +E+   EQK + +ELE++++KLNE V +L KE
Sbjct:   241 LEKIMEEKKNEIDGLKREIKVLLSEKNEMEIVKIEQKGVIEELERKLDKLNETVRSLTKE 300

Query:   294 EKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKA 353
             EKVL   ++ LE +  E+M+++  M++EI AL  +   K+  +ERLI EK+ I  ++E  
Sbjct:   301 EKVLRDLVIGLEKNLDESMEKESGMMVEIDALGKERTIKESEVERLIGEKNLIEKQMEML 360

Query:   354 VVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKS 413
              V   DK   I +L REK ++EER   ++ ++  L+++  EL   V  L+ +C DQ   +
Sbjct:   361 NVQSSDKGKLIDQLSREKVELEERIFSRERKLVELNRKADELTHAVAVLQKNCDDQTKIN 420

Query:   414 KQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSXXXXXXXXXXXXLAKTR 473
              +L  ++    +AL Q  L R+ A K LDE++++G DL+ ++             L K +
Sbjct:   421 GKLSCKVDQLSNALAQVELRREEADKALDEEKRNGEDLKAEVLKSEKMVAKTLEELEKVK 480

Query:   474 NERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLK 533
              ER++L   +  +ES    L  E   ++K L+E ++  + L+ ++ES G ++ R++ MLK
Sbjct:   481 IERKSLFSAKNDLESQSESLKSENVKLEKELVELRKAMEALKTELESAGMDAKRSMVMLK 540

Query:   534 NTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVEL 593
             + A+M+ Q EN  D    L+ +E+K +  T+ YA E ++I  AF+N+E ++E+MK   E+
Sbjct:   541 SAASMLSQLENRED---RLISEEQKREIGTEPYAMELESIEKAFKNKEDIIEEMKKEAEI 597

Query:   594 MQNSVE-AQKKKSFWTVVSSATTIFAAASVAYIARIR 629
             M+ S E A KK++FWT+VSS TT+FAAAS AY AR R
Sbjct:   598 MKQSTEEAHKKQTFWTLVSSVTTVFAAASFAYAARAR 634

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146440 AT5G27330 "AT5G27330" [Arabidopsis thaliana (taxid:3702)]

 Score = 983 (351.1 bits), Expect = 5.0e-99, P = 5.0e-99
 Identities = 239/638 (37%), Positives = 374/638 (58%)

Query:     1 MAKKKATQKTNDANEANPQEQKNNQNL--TQGKTVALTHRNSMED---PSEQIKRLKSLN 55
             MAKKK ++ +N A+  N Q+Q  NQ++  T  K+  L+  +SMED     E+ + LKSLN
Sbjct:     1 MAKKKVSRNSNGAS--NEQQQIQNQSVPVTSQKSTKLSRESSMEDHDSSEEKFQNLKSLN 58

Query:    56 DLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFC 115
              +L+ ++ E+RQQ+ESL QAK +LE EL   G EK+ L  EL G SD+   L+IE  L  
Sbjct:    59 AILLKQTMEKRQQIESLFQAKDSLEIELVRSGKEKTLLREELCGSSDENFMLKIEMDLLM 118

Query:   116 VFLMTQMKEMGEGLD---EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMK 172
              F+  ++KEMG  +D   +EK++RE EI  LK E +GL+  +E+ERE  S+ C E+DL+K
Sbjct:   119 GFVEGRVKEMGVEVDWLFKEKSDRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVK 178

Query:   173 GELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKG 232
                D Q +E + LK+ ++ +E +E +L  E+  L+ + GRL KE+ +R+  IE   +E+ 
Sbjct:   179 SGFDLQSEEMNLLKESVVRLEMREVSLGEEVGRLKCENGRLVKERKKREEVIERGNRERS 238

Query:   233 LLGKRLVGLEKETXXXXXXXXXXXXEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQK 292
              L + L    +E             EK  +EM   +Q+ +  ELEK++  +NEIV +L K
Sbjct:   239 ELVESLEEKVREIDVLKREIEGVVKEKMEVEMVRRDQREMIVELEKKLGDMNEIVESLTK 298

Query:   293 EEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEK 352
             E + L G+++ LE S  E  +E      +I  L+ ++  K+  +E L+ E + I   +E 
Sbjct:   299 EREGLRGQVVGLEKSLDEVTEEAKARAEQINELVKEKTVKESELEGLMVENNSIKKEIEM 358

Query:   353 AVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDK 412
             A+V   DKE  + +LLREKN++ +R V Q+ EI  L K  GE +  V +L+    DQ   
Sbjct:   359 AMVQFSDKEKLVEQLLREKNELVQRVVNQEAEIVELSKLAGEQKHAVAQLRKDYNDQIKN 418

Query:   413 SKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSXXXXXXXXXXXXLAKT 472
              ++L   ++  K AL    +ERDNA K LDE++++ + L+ K+             L K 
Sbjct:   419 GEKLNCNVSQLKDALALVEVERDNAGKALDEEKRNMVALKEKVVALEKTNEATGKELEKI 478

Query:   473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSML 532
             + ER  L+  +K++E+    L  EK ++QK+++E KR    L+ ++ES G N+ ++L+ML
Sbjct:   479 KAERGRLIKEKKELENRSESLRNEKAILQKDIVELKRATGVLKTELESAGTNAKQSLTML 538

Query:   533 KNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVE 592
             K+ +++VC  EN          DEKK     D Y+ + +AI  AF+N+E +VE+MK  + 
Sbjct:   539 KSVSSLVCGIENK--------KDEKKRGKGMDSYSVQLEAIKKAFKNKESMVEEMKKELA 590

Query:   593 LMQNSVE-AQKKKSFWTVVSSATTIFAAASVAYIARIR 629
              M++SVE A KKKSFWT+VSS T++  AASVAY A ++
Sbjct:   591 KMKHSVEDAHKKKSFWTLVSSVTSLLMAASVAYAASLK 628

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0042991 "transcription factor import into nucleus" evidence=RCA

DICTYBASE|DDB_G0287291 abpD "interaptin" [Dictyostelium discoideum (taxid:44689)]

 Score = 283 (104.7 bits), Expect = 6.8e-21, P = 6.8e-21
 Identities = 130/584 (22%), Positives = 274/584 (46%)

Query:     5 KATQKTNDANEANPQEQKNNQ-NLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRSH 63
             K   ++ND  + N   +K NQ    Q +   L  +N  +   +Q+K+    NDL+     
Sbjct:   951 KQQNRSNDEKDENDLIEKENQLKSIQNELNQLIEKNESDHKEQQLKQQSIENDLI--EKE 1008

Query:    64 EQRQQVES-LSQAKAALEAELSLFGVEKSELLAELS-GESDQKVSLE-IEKGLFCVFLMT 120
              Q QQ++S L++ +     +LS    + ++L+ +    + +Q++  + IE  LF      
Sbjct:  1009 NQIQQLQSQLNEQRQQQSNQLSEKDQQLNQLIEKNQFDQKEQQLKQQSIENDLF--EKEN 1066

Query:   121 QMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENER--ERLSQACREKDLMKGE---- 174
             Q++++   L+E++ ++ N++     +++ L+   E+++  ++L Q   E DL++ E    
Sbjct:  1067 QIQQLQSQLNEQRQQQSNQLSEKDQQLNQLIEKNESDQKEQQLKQQSIENDLIEKENQIQ 1126

Query:   175 -LDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGL 233
              L  Q+ E  +L+  +     K   L  ++   QSD  +L  EK ++D  ++  + E   
Sbjct:  1127 QLQLQLNEQRQLQSEVSIDNDKILELEKQLKQCQSDLLKLNDEKQQQDKQLQDKQIEFDQ 1186

Query:   234 LGKRLVGLEKETXXXXXXXXXXXXEK-NAIEMQNSEQKVINDELEKEVNKLNEIVLALQK 292
             L       + +             ++  +I+   ++ K  N E EK++++ +E + ++Q 
Sbjct:  1187 LQLTFNQFKNDKDSQFIQLQDDQKQQLQSIQQDLNQLKQENQEKEKQLSEKDEKLQSIQF 1246

Query:   293 EEKVLCGKILELENSCSEAMDEKLEMVLE-IKALLDQEREKQKRIERLIEEKDEISHRLE 351
             E +       E E   SE  DEKL+ + + +  L D+ +EK K+      EKDE    ++
Sbjct:  1247 ENQ-------EKEKQLSEK-DEKLQSIQQNLNQLNDENQEKVKQFS----EKDEKLQSIQ 1294

Query:   352 KAVVVLDDKEGEIAKLLREKNDIEERKVCQD-NEISG----LHKEIGELRDVVFKLKASC 406
             + +  L  +  E  K L EK++ + + + QD N+++      ++++ E  + + KL+   
Sbjct:  1295 QDLNQLKQENQEKEKQLSEKDE-KLQSIQQDLNQLNDDQIKKNEKLKEKEEQLLKLQQDF 1353

Query:   407 RDQQDKS-KQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSXXXXXXXXX 465
              DQQ +  KQL  +L++ ++ L Q  L+++N    L++Q++S  ++  +L          
Sbjct:  1354 NDQQSQQLKQLEEKLSEKENQLQQ--LKQENEINQLNQQQQSN-EIIQQLKDQLLKQQQQ 1410

Query:   466 XXXLAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNS 525
                  +  NE+E      +++   I  L +++E+ Q  L   +      + + + +  N 
Sbjct:  1411 EQQ--ENNNEKEI-----ERLIQEIEQLKQQQEIDQSELSNKEIKIQTTQQEFDQLSHNR 1463

Query:   526 DRA---LSMLKNTAAMVCQSENDIDGQQELVVDEK-KLQGETDQ 565
              +    L  L+     + QS +D D Q + V+DE+  LQ + +Q
Sbjct:  1464 SKDQLHLQQLQQELDQLKQSFDDQDHQFKKVIDERYNLQLQLEQ 1507

GO:0005635 "nuclear envelope" evidence=IDA

GO:0009847 "spore germination" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA;IMP

GO:0042175 "nuclear outer membrane-endoplasmic reticulum membrane network" evidence=IDA

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;IDA

GO:0003779 "actin binding" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032580 "Golgi cisterna membrane" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ZFIN|ZDB-GENE-030616-583 acin1a "apoptotic chromatin condensation inducer 1a" [Danio rerio (taxid:7955)]

 Score = 265 (98.3 bits), Expect = 4.6e-19, P = 4.6e-19
 Identities = 163/632 (25%), Positives = 290/632 (45%)

Query:     5 KATQKTNDANEANPQEQKNNQNLTQGKTVALTHRN---SMEDPSEQIKRLKSLNDLLVHR 61
             KA +K  +  E    E++  Q L + +  A + R    +++   E+ +RL+    L   R
Sbjct:   409 KALEKEEEERE-KALEKERAQALERKRLEAASKREKERALQREREEKERLEREQALERER 467

Query:    62 SHEQRQQVESLSQAKAALEAELSLF--GVEKSELLAE-LSGE-SDQKVSLEIEKGLFCVF 117
             + EQ +++E   Q K  +E E       +E+  L  E L  E  +++ +LE E+ L    
Sbjct:   468 ALEQ-ERLERERQEKERVEKERQEKEQALERERLKQERLEKERQEREEALERER-LERER 525

Query:   118 LMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC 177
             L  + +E  E L++E+ ERE      + + + L      ERERL +   EK+  K E + 
Sbjct:   526 LEKERQEREEALEKERLERERLEKERREKEAAL------ERERLEKERLEKE--KKEKEA 577

Query:   178 QVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDG--DIEAFKKEKGLLG 235
              + E  RL+   IE E +E+    E   L+ +  RL+KEK E++   + E  KKE+ L  
Sbjct:   578 AL-ERERLEKERIEKEKREKEEALERERLEKE--RLEKEKREKEEAQERERLKKER-LEK 633

Query:   236 KRLVGLEKETXXXXXXXXXXXX----EKNAIEMQNSEQKVI--NDELEKE-VNK-LNEIV 287
             ++   LEKE                 EK  +E +  E++     + LEKE + K   E  
Sbjct:   634 EKKEALEKERLEKERQEKEAVERERLEKERLEKEKREKEAALERERLEKERIEKEKREKE 693

Query:   288 LALQKE--EKVLCGKIL-ELENSCS-EAMD-EKLEMVLEIKALLDQEREKQKRIERLIEE 342
              AL++E  EK    K   E E +   E ++ E+LE   + K +L++ER +++R+E+  +E
Sbjct:   694 EALERERLEKERLEKEKREKEEALERERLEKERLEKERQEKEVLERERLEKERLEKERKE 753

Query:   343 KDEI--SHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVF 400
             ++E     RLEK  +  + +E  + +   EK  +E+ +  Q+     L +E  E      
Sbjct:   754 QEEALERERLEKEKLEKEKQEQALERERLEKERLEKERKEQEK---ALERERLEKE---- 806

Query:   401 KLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWK-DLDEQ-RKSGMDLRLKLSXX 458
             KL+   ++Q  + ++L  E  + K   +Q TLER+   K + ++Q R+  ++        
Sbjct:   807 KLEKEKQEQALERERLEKERLE-KERKEQETLEREKLEKLEKEKQEREQALERERLEKEH 865

Query:   459 XXXXXXXXXXLAKTRNERETLVDLRKKMESHIGLLAEEKELMQKN-LLEAKRNADDLRAK 517
                       L + R E+E L   R + E  I    +EKE  ++   LE +R   +   K
Sbjct:   866 IEKEKREKEALERERLEKERLEKERNEREQAIERERQEKEEREREETLEKERKEQERLEK 925

Query:   518 MESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETD----QYAAEFQAI 573
               ++    + AL + K     + + E  ++  +E +  E+ LQ E +    +     QA+
Sbjct:   926 ERALEKEREAALELKKQEQERL-EKEKALE--EERLQKEQALQHEREAERKKEEERKQAL 982

Query:   574 VNAFRNREKLVEDMKHRVELMQNSVEAQKKKS 605
                   +E+ +++ K    L Q SVE +K K+
Sbjct:   983 EKQKEEQERALKEEKREKLLKQKSVEEEKGKA 1014

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|G5E5V6 LOC517509 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 246 (91.7 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 134/602 (22%), Positives = 265/602 (44%)

Query:    28 TQGKTVALTHRNSMEDPSEQIKRLKS-LNDLLVHRSHEQRQQVESLSQAKAALEAELSLF 86
             TQG   A    + ++D  EQ  +L + + +L      E + Q +++ + +  ++A+L + 
Sbjct:   587 TQGNNQASNSSSEVKDLLEQKNKLTTEVAELQTQLQLEVKNQ-QNIKEERDRMKADLEVL 645

Query:    87 GVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSE 146
               +    + E S    ++  LE  +G     L   ++E    L + K ERE      ++E
Sbjct:   646 QSQHDSKVEE-STVLQRR--LEESEGA----LRRHLEE----LFQVKMEREQH----QTE 690

Query:   147 VSGLMGNIENERERLSQACREKDLMKGELDCQVKEASR-LKDRLIEMEGKERNLRSEILV 205
             +  L   +    + L  A + +D  KG L  ++ +A + L+  LI  E +E  LR     
Sbjct:   691 IRDLQDQLSEMHDELDSAKQSEDREKGALIEELLQAKQDLQHLLIAKEEQEDLLRKRERE 750

Query:   206 LQSDYGRLKKEKNERDGDIEAFKKEKG--LLG---------KRLVGLEKETXXXXXXXXX 254
             L +  G LK+E +  D +++  K++    LL          K +  L   +         
Sbjct:   751 LTALKGALKEEVSSHDREMDKLKEQYDAELLALRESVEEATKNVEVLASRSSSAEQTQVG 810

Query:   255 XXXEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEE----KVL--C-GKILELENS 307
                   A++ +N + +   +ELE+ V +L   +  LQ +E    + L  C G+  +LE +
Sbjct:   811 AEMRVKALQEENEKLRGSVEELERTVARLQRQLADLQDDEAKAKETLKKCEGETRQLEEA 870

Query:   308 CSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKL 367
                A  E+ E     +AL  +  E Q+ + R  +E+ ++S RL+      + KE    +L
Sbjct:   871 LLHARKEEKEATSAKRALQTELEEAQRNLSRATQEQKQLSERLKDEA---EQKE----QL 923

Query:   368 LREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVN-ELADYKSA 426
              R KN++E  +   D  I  L KE+ ++ +V        ++Q D+ K+    ELA+ +  
Sbjct:   924 RRLKNEMENERWHLDKTIEKLQKEMADIVEVSRTSTLELQNQLDEYKEKNRRELAEMQRQ 983

Query:   427 LDQATLERDNAWKDLDEQRKSGMDLRLKLSXXXXXXXXXXXXLAKTRNERETLVDLRKKM 486
             L + TLE + +   L   +    ++RL               L K +   +TL DL  ++
Sbjct:   984 LKEKTLEAEKS--HLTAMKLQD-EMRLMEEELRDYQRAQEEALTKRQLLEQTLKDLEYEL 1040

Query:   487 ESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDI 546
             E+   L  +   L+++  +E K     L  ++E    NSD     +  +   + Q  N++
Sbjct:  1041 EAKSHLKDDRGRLVKQ--MEDK--VSQLEMELEEERNNSDLLSERITRSREQMEQMRNEL 1096

Query:   547 DGQ----QELVVDEKKLQGETDQYAAEFQAIVNAFRN-REKLVEDMKHRVELMQNSVEAQ 601
               +    Q+L  D+  L+ +     +    +  ++R+ +E LV  M+ R+  +++ +E++
Sbjct:  1097 LQERAMKQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLESE 1156

Query:   602 KK 603
             ++
Sbjct:  1157 ER 1158

GO:0043296 "apical junction complex" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

ZFIN|ZDB-GENE-030616-162 myh10 "myosin, heavy chain 10, non-muscle" [Danio rerio (taxid:7955)]

 Score = 247 (92.0 bits), Expect = 6.6e-17, P = 6.6e-17
 Identities = 133/619 (21%), Positives = 262/619 (42%)

Query:     3 KKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQI---KRLK-SLN--- 55
             + K  Q+  +  +A   E +N+++  Q   +   H  ++E+ SEQ+   KR+K +L    
Sbjct:  1188 RSKREQEVAELKKAIDDETRNHESQIQ--EMRQRHGTALEEISEQLEQAKRVKGNLEKNK 1245

Query:    56 DLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFC 115
               L   + E   +V+SL QAK+  E +      +  E++A  S    +KV  E+      
Sbjct:  1246 QTLESDNKELTNEVKSLQQAKSESEHKRKKLEAQLQEVMARFS--EGEKVKGELADRTHK 1303

Query:   116 VFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGEL 175
             +   T++  +   L++     E + I L  +VS L   +++ +E L +  R+K  +   +
Sbjct:  1304 I--QTELDNVSCLLEDA----EKKGIKLTKDVSSLESQLQDTQELLQEETRQKLNLSSRI 1357

Query:   176 DCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLG 235
                 +E + L ++  E E   +NL  ++  LQ+     KK+  +  G +E  ++ K  L 
Sbjct:  1358 RQLEEEKNNLLEQQEEEEESRKNLEKQLATLQAQLVETKKKLEDDVGALEGLEEVKRKLQ 1417

Query:   236 KRLVGLEKETXXXXXXXXXXXXEKNAIEMQNSE-------QKVINDELEKEVNKLNEIVL 288
             K +    ++              KN ++ +  +       Q+ I   LEK+  K +++ L
Sbjct:  1418 KDMEVTSQKLEEKAIAFDKLEKTKNRLQQELDDLMVDLDHQRQIVSNLEKKQKKFDQM-L 1476

Query:   289 ALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISH 348
             A   EEK +  +  E  +       EK    L +   LD+  E ++  ERL     ++  
Sbjct:  1477 A---EEKTISARYAEERDRAEAEAREKDTKALSMARALDEALEAKEEFERL---NKQLRA 1530

Query:   349 RLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASC-- 406
              +E  +   DD    + +L + K  +E++      ++  L  E+    D   +L+ +   
Sbjct:  1531 EMEDLISSKDDVGKNVHELEKSKRTLEQQVEEMRTQLEELEDELQATEDAKLRLEVNMQA 1590

Query:   407 -RDQQDKSKQLVNELADYKS-ALDQATLERDNAWKDLDEQRKSGMDLRLKLSXXXXXXXX 464
              + Q D+  Q  +E  + K  AL +   E +   +D  +QR   +  + KL         
Sbjct:  1591 MKAQFDRDLQARDEQNEEKKRALVKQVREMEAELEDERKQRALAVAAKKKLEMDLKDVEA 1650

Query:   465 XXXXLAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN 524
                   K R+E   +  LRK       L A+ K+  Q+ L EA+ + D++  + +    N
Sbjct:  1651 QIEAANKARDE--AIKQLRK-------LQAQMKDY-QRELEEARTSRDEIFTQSKE---N 1697

Query:   525 SDRALSMLKNTAAMVCQSENDIDGQQEL---VVDEK-KLQGETDQYAAEFQAIVNAFRNR 580
               +    LK+  A + Q + D+   +        E+ +L  E    A+   A+++  R  
Sbjct:  1698 EKK----LKSLEAEILQLQEDLASSERARRHAEQERDELADEISNSASGKAALLDEKRRL 1753

Query:   581 EKLVEDMKHRVELMQNSVE 599
             E  +  ++  +E  Q+++E
Sbjct:  1754 EARIAQLEEELEEEQSNME 1772

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|E2QV06 CGNL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 244 (91.0 bits), Expect = 8.1e-17, P = 8.1e-17
 Identities = 135/596 (22%), Positives = 254/596 (42%)

Query:    39 NSMEDPSEQIKRL-KSLNDLLVHRSHEQRQ-QVESLSQAKAALEAELSLFGVEKSELLAE 96
             N   + S +++ L +  N L    +  QRQ Q+E  +Q     E E     +E      E
Sbjct:   594 NQASNSSSEVRDLLEQKNKLTTEVAELQRQLQLEVKNQQNIKEERERMKANLE------E 647

Query:    97 LSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDE---EKNERENEIIALKSEVSGLMGN 153
             L G+ D KV    E  +    L     E+ + L+E    K ERE      ++E+  L   
Sbjct:   648 LQGQHDSKVE---ENSMLQQRLEESEGELRKNLEELFQVKMEREQH----QTEIRDLQDQ 700

Query:   154 IENERERLSQACREKDLMKGELDCQVKEASR-LKDRLIEMEGKERNLRSEILVLQSDYGR 212
             +    + L  A R +D  KG L  ++ +A + L+D LI  E +E  LR     L +  G 
Sbjct:   701 LSEMHDELDSAKRSEDREKGALIEELLQAKQDLQDLLIAKEEQEDLLRKRERELTALKGA 760

Query:   213 LKKE-----------KNERDGDIEAFKKEKGLLGKRLVGLEKETXXXXXXXXXXXXEKNA 261
             LK+E           K + D +++A ++      K +  L   +               A
Sbjct:   761 LKEEVSSHDLEMDKLKEQYDAELQALRESVEEATKNVEVLASRSNTSEQSQLGAEMHVKA 820

Query:   262 IEMQNSEQKVINDELEKEVNKLNEIVLALQ------KEEKVLCGKI-LELENSCSEAMDE 314
             ++ +N + +   +ELE+ V +L   +  ++      KE    C +   +LE +   A  E
Sbjct:   821 LQEENEKLRESIEELEQSVARLQRQIADMKDDEVKAKERLTKCERENRQLEEALVNARKE 880

Query:   315 KLEMVLEIKALLDQEREK-QKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKND 373
             + E    ++  L+ E E  Q+ + R  +E+ ++S +L+      + KE    +L R KN+
Sbjct:   881 EREAT-SVRRTLEGELEDVQRNLSRATQEQKQLSEKLKDET---EQKE----QLRRLKNE 932

Query:   374 IEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVN-ELADYKSALDQATL 432
             +E  +   D  I  L KE+ ++ +V        ++Q D+ K+    ELA+ +  L + TL
Sbjct:   933 MENERWHLDKTIEKLQKEMADIVEVSRVSTLELQNQLDEYKEKNRRELAEMQRQLKEKTL 992

Query:   433 ERDNAWKDLDEQRKSGMDLRLKLSXXXXXXXXXXXXLAKTRNERETLVDLRKKMESHIGL 492
             E +   K      K   ++RL               L K +   +TL DL  ++E+   L
Sbjct:   993 EAE---KSRLTAMKLQDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKSHL 1049

Query:   493 LAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQ--- 549
               +   L+++  +E K     L  ++E    NSD     +  +   + Q  +++  +   
Sbjct:  1050 KDDRSRLVKQ--MEDK--VSQLEMELEEERNNSDLLSERITRSREQMEQMRSELLQERAL 1105

Query:   550 -QELVVDEKKLQGETDQYAAEFQAIVNAFRN-REKLVEDMKHRVELMQNSVEAQKK 603
              Q+L  D+  L+ +     +    +  ++R+ +E LV  M+ R+  +++ +E +++
Sbjct:  1106 KQDLECDKISLERQNKDLKSRIIHLEGSYRSSKEGLVVQMEARIAELEDRLENEER 1161

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|F1S2Y5 CENPF "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 243 (90.6 bits), Expect = 2.4e-16, P = 2.4e-16
 Identities = 130/588 (22%), Positives = 254/588 (43%)

Query:    42 EDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQA----KAALEAELSLFGVEKSELLAEL 97
             E   E+I  L+SL    +H   EQ Q++E  SQA    ++ LE ++     EK  L+ E 
Sbjct:  1978 EKMKEKIGELESLQGERLHLQ-EQLQRLEEDSQALSLVRSELENQIGQLNKEKDSLIRES 2036

Query:    98 SGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIE-N 156
                  +   LE EK      L   + E GE +    +  + E+  L+  +  L   IE +
Sbjct:  2037 ESLQGKLSELEREKLTIAKALEAALMEKGE-VAVRLSSTQEEVHQLRKGIEKLQVRIEAD 2095

Query:   157 ERERL--SQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE------RNLRSEILVLQS 208
             E+++L  S+  RE +     L  +V+   R + ++ E E +E       N ++E+  L++
Sbjct:  2096 EKKQLHVSEKLRESERRNDALQDKVENLER-ELQMAE-ENQELVILDAENSKAEVDTLKT 2153

Query:   209 DYGRLKKEKNERDGDIEAFKKEKGLLGKRLV---GL--EKETXXXXXXXXXXXXEKNAIE 263
                 + +     + D+   + EK  L K+L    G   E +T            E+  I+
Sbjct:  2154 QIELMTESLKTLELDLVTTQSEKETLTKQLQEKQGQVSELDTLLSSLKNLLEGKEQEKIQ 2213

Query:   264 MQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIK 323
             M+  E K   + L+ ++ +L E V AL K+++    +   L++   E    +   + ++K
Sbjct:  2214 MKE-ESKAAVEMLQTQLKELTEEVAALCKDQETWKAQGQSLDSPVQEIHQLRCG-IGKLK 2271

Query:   324 ALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDN 383
                + + +KQ  I   ++E +  +  L+  V  L+ +E E++   +E   +E  K     
Sbjct:  2272 VHREADEKKQLHILEKLKESEHHADLLKDRVKNLE-RELEVSGKNQEHAILEAEK--SKA 2328

Query:   384 EISGLHKEIGE----LRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWK 439
             E+  L  +I E    LRD    L     ++QD  K+L  E     S L++     +   +
Sbjct:  2329 EVETLEAKIEEMAQNLRDSELDLVNIRSEKQDLMKELQKEQGRV-SELEKLNSSFEKLLQ 2387

Query:   440 DLDEQRKSGM--DLRLKLSXXXXXXXXXXXXLAKTRNERETLVDLRKKMESHIGLLAEEK 497
             D  EQ K  M  D +  +             +A   +++ET     + + S +  L +EK
Sbjct:  2388 D-KEQEKEQMKEDSKAAVEMFQMQLQELKEKVATLCDDQETWKIKEQSLSSQVDSLEQEK 2446

Query:   498 ELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEK 557
               + + L EAK N   L+  +  +    + +   L+     +C  +N     ++LV    
Sbjct:  2447 AQLLQGLDEAKSNYVILQNSVNGLIQEVEDSKQKLEKKDEEICILQNQTQDHEQLVSKLS 2506

Query:   558 KLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKS 605
             +++GE   +  +   + N     E+ +++++ + + +Q+++EA +  S
Sbjct:  2507 QMEGEQQLWKKQKTELGNLMVEMEQKIQEVQSQKDTLQDALEALQNSS 2554

GO:0051310 "metaphase plate congression" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0045502 "dynein binding" evidence=IEA

GO:0045120 "pronucleus" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030496 "midbody" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016202 "regulation of striated muscle tissue development" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0010389 "regulation of G2/M transition of mitotic cell cycle" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0000922 "spindle pole" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0000085 "G2 phase of mitotic cell cycle" evidence=IEA

DICTYBASE|DDB_G0286355 mhcA "myosin heavy chain" [Dictyostelium discoideum (taxid:44689)]

 Score = 241 (89.9 bits), Expect = 3.2e-16, P = 3.2e-16
 Identities = 136/627 (21%), Positives = 275/627 (43%)

Query:     1 MAKKKATQKTNDANEANPQEQKNNQNLT-QGKTVALTHRNSMEDPSEQIKRL--KSLNDL 57
             +A+ +   +     ++N ++QK    L  + K+  L    + +   +++K+   + L+++
Sbjct:  1180 VARLQGELEAEQLAKSNVEKQKKKVELDLEDKSAQLAEETAAKQALDKLKKKLEQELSEV 1239

Query:    58 LVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVF 117
                 S    + V S S  K  LE     F   K EL      E++QK    +EK    + 
Sbjct:  1240 QTQLSEANNKNVNSDSTNKH-LETS---FNNLKLEL------EAEQKAKQALEKKR--LG 1287

Query:   118 LMTQMKEMGEGLDEEKNERE-NEI--IALKSEVSGLMGNIENE---RERLSQACREKDLM 171
             L +++K + E L+EEK ++E NE   + L+ EVS L   IE E   ++ +++A  +K+  
Sbjct:  1288 LESELKHVNEQLEEEKKQKESNEKRKVDLEKEVSELKDQIEEEVASKKAVTEAKNKKESE 1347

Query:   172 KGELDCQVKEASRLKDRLIE----MEGKERNLRSEILVLQSDYGRLKKEKNERDGDIE-A 226
               E+  Q  +    +D+ +E    ++ K   LR+     +    R ++ K + + D+E A
Sbjct:  1348 LDEIKRQYADVVSSRDKSVEQLKTLQAKNEELRNTAEEAEGQLDRAERSKKKAEFDLEEA 1407

Query:   227 FKKEKGLLGKRLVGLEKETXXXXXXXXXXXXEKNAIEMQNSEQKVINDELEKEVNKLNEI 286
              K  +    K+ V  EK              E +  +  +SEQ V    L +E+++L  +
Sbjct:  1408 VKNLEEETAKK-VKAEKAMKKAETDYRSTKSELDDAKNVSSEQYVQIKRLNEELSELRSV 1466

Query:   287 VLALQKEEKVLCG-KILELENSCSEAMDEKLEMVLEIKALLDQE-REKQKRIERLIEEKD 344
             +   + +E+     K  +   S  E++ ++++     KA  +++ +E + R+  L E  +
Sbjct:  1467 LE--EADERCNSAIKAKKTAESALESLKDEIDAANNAKAKAERKSKELEVRVAELEESLE 1524

Query:   345 EISHRLEKAVVVLDDKEGEIAKLLREKNDIE-ERKVCQDNEISGLHKEIGELRDVVFKLK 403
             + S  +   V  +  K+ EI  L R + D E E ++  D +     K+  +L   V + +
Sbjct:  1525 DKSGTVN--VEFIRKKDAEIDDL-RARLDRETESRIKSDEDKKNTRKQFADLEAKVEEAQ 1581

Query:   404 ASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSXXXXXXX 463
                       K+L +++ D  + LD  T  R    K    ++K    L  + +       
Sbjct:  1582 REVVTIDRLKKKLESDIIDLSTQLDTETKSRIKIEKS---KKKLEQTLAERRAAEEGSSK 1638

Query:   464 XXXXXLAKTRNERETLVDLRKKMESHIGLL-AEEKELMQKNLL----EAKRNADD-LRAK 517
                  + K     + + +LR +++S    L A EK++  K+L+    E K   +D + AK
Sbjct:  1639 AADEEIRK--QVWQEVDELRAQLDSERAALNASEKKI--KSLVAEVDEVKEQLEDEILAK 1694

Query:   518 MESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAF 577
              + +   + RAL +      +  Q E + D + EL   +++L  E +    ++ A V   
Sbjct:  1695 DKLV--KAKRALEV--ELEEVRDQLEEEEDSRSELEDSKRRLTTEVEDIKKKYDAEVEQN 1750

Query:   578 RNREKLVEDMKHRVELMQNSVEAQKKK 604
                ++  + +   V+ ++  +E +KKK
Sbjct:  1751 TKLDEAKKKLTDDVDTLKKQLEDEKKK 1777

GO:0032009 "early phagosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0071889 "14-3-3 protein binding" evidence=IPI

GO:0000910 "cytokinesis" evidence=IGI;IMP

GO:0033275 "actin-myosin filament sliding" evidence=IDA

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0000146 "microfilament motor activity" evidence=IDA

GO:0051015 "actin filament binding" evidence=IEA;IDA

GO:0060328 "cytoplasmic actin-based contraction involved in forward cell motility" evidence=IMP

GO:0034461 "uropod retraction" evidence=IMP

GO:0031270 "pseudopodium retraction" evidence=IMP

GO:0030866 "cortical actin cytoskeleton organization" evidence=IDA

GO:0005938 "cell cortex" evidence=IEA;IDA

GO:0032060 "bleb assembly" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0008104 "protein localization" evidence=IMP

GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP

GO:0030038 "contractile actin filament bundle assembly" evidence=IMP

GO:0046847 "filopodium assembly" evidence=IMP

GO:0003774 "motor activity" evidence=IEA;IDA

GO:0001931 "uropod" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0030554 "adenyl nucleotide binding" evidence=IDA

GO:0006928 "cellular component movement" evidence=IGI;IMP

GO:0005826 "actomyosin contractile ring" evidence=IDA

GO:0032154 "cleavage furrow" evidence=IDA

GO:0031143 "pseudopodium" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045179 "apical cortex" evidence=IDA

GO:0016459 "myosin complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0031254 "trailing edge" evidence=IDA

GO:0042641 "actomyosin" evidence=IDA

GO:0032982 "myosin filament" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0016460 "myosin II complex" evidence=IDA

GO:0044351 "macropinocytosis" evidence=RCA

DICTYBASE|DDB_G0272472 DDB_G0272472 "putative actin binding protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 243 (90.6 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
 Identities = 127/532 (23%), Positives = 246/532 (46%)

Query:     3 KKKATQKTNDANEANPQEQKNNQNLTQGKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRS 62
             +KK ++   +A   N  +  NN N T   T   T+  +  +  E+IK  + L+       
Sbjct:   524 EKKFSKSAANATTTN-NDNNNNNNNTSSPTNKSTNLFNDWEKEEEIKVKEELDKKKKIEQ 582

Query:    63 HEQRQQVESLSQAKAALEAELSLFG--VEKSELLAELSGESDQKV--SLEIEKGLF--CV 116
              ++ +Q + L + K  +  E  +    + K +L  +L  E  +K    L + K L    +
Sbjct:   583 EKKLEQEKKLIEEKKRIAEEKRISDEILAKKQLAEKLEKERIEKELEDLRLAKELEEKRL 642

Query:   117 FLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELD 176
               + Q KE+ E L  E+ E+E E   +  E+      +E E++   +  R+ +  + + +
Sbjct:   643 LALRQEKELAEKLKRERLEKEAEDKRIAQEIE--RKRLEKEKQDQLEKQRKLEQQRLQKE 700

Query:   177 CQVKE-ASRLKDRLIEMEGKERNLRSEILVLQSDYGRLK-KEKNERDGDIEAFKKEKGLL 234
                KE A RL+   IE E KE+  + E + L+ +    K KE+ +++ D +    +  L 
Sbjct:   701 KDEKELADRLEKERIENEIKEKQKQLEKIKLEKELAEKKEKERLQKEADEKRIADQ--LE 758

Query:   235 GKRLVGLEKETXXXXXXXXXXXXEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEE 294
              +RL+ L++E             ++ A E    E+++  ++LEK+  +L +     + EE
Sbjct:   759 FERLLKLKQEKELAEKLEKERLEKEAAAE----EKRIAAEKLEKQ--RLEK-----EAEE 807

Query:   295 KVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAV 354
             K +  + LE +    EA ++++   LE K L  +  EK+   E+L +++ E++ +LEK  
Sbjct:   808 KRIA-QDLERKRLEKEAEEKRIAQDLERKRLEKEAEEKRIAAEKL-KQQQELAAKLEKER 865

Query:   355 VVLDDKEGEIA--KLLREKNDI-EERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQD 411
             +  + +E  IA  K + E+N I +E+K+ ++ E   L KE  + R    +L+    +++ 
Sbjct:   866 LEKEAEEKRIAQEKRIAEENRIAQEKKIAEELEKKRLQKEEQD-RLAAAELERKRLEKEA 924

Query:   412 KSKQLVNELADYKSALDQATLER--DNAWK--DLDEQR--KSGMDLRLKLSXXXXXXXXX 465
             + K++  EL   +   + A ++R  D A     L+++R  K   + R+            
Sbjct:   925 EEKRIAQELEKKRLEKEAAEVKRIADEAAAAAKLEKERLEKEAEEKRI------ADEAAA 978

Query:   466 XXXLAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAK 517
                L K R E+E      K++       A E +L ++ L + KR AD+  A+
Sbjct:   979 AAKLEKERLEKEAAAAEEKRIADEA---AAEAKLEKERLEKEKRIADEAAAE 1027

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0070012701 hypothetical protein (626 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	629
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-12
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-12
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-09
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-09
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	5e-07
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	6e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	8e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-07
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	2e-06
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	5e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-05
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	1e-05
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	3e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
pfam07888	546	pfam07888, CALCOCO1, Calcium binding and coiled-co	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	7e-04
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	8e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.001
pfam13166	713	pfam13166, AAA_13, AAA domain	0.002
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
PRK03918	880	PRK03918, PRK03918, chromosome segregation protein	0.003
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 69.4 bits (170), Expect = 4e-12
 Identities = 75/350 (21%), Positives = 163/350 (46%), Gaps = 13/350 (3%)

Query: 155 ENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRS-EILVLQSDYGRL 213
           E + ER  +     + +  EL+ Q+++  R  ++    +  +  LR  E+ +L +    L
Sbjct: 178 ERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKEL 237

Query: 214 KKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVIN 273
           +KE  E + ++   ++E   L + L   EKE ++LK +++ + +E   ++ +  E K   
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297

Query: 274 DELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQ 333
           +ELE E++ L E +  L+ E + L  ++ EL+    E ++   E + E + LL++  +  
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELK----EKIEALKEELEERETLLEELEQLL 353

Query: 334 KRIERLIEEKDEISHRLEKAVVV--------LDDKEGEIAKLLREKNDIEERKVCQDNEI 385
             +E   EE +E    L + +          L + E E+A++  E  +++      +  +
Sbjct: 354 AELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413

Query: 386 SGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQR 445
             L + + +L++ + +L+A   + Q + ++L  EL + +  L++         ++L E +
Sbjct: 414 ERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQ 473

Query: 446 KSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAE 495
           +    L  +LS +E R +    E   ++  R  L  L   +    G +AE
Sbjct: 474 EELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAE 523

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 68.6 bits (168), Expect = 7e-12
 Identities = 73/317 (23%), Positives = 151/317 (47%), Gaps = 2/317 (0%)

Query: 224 IEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKL 283
             A K+E   L + L  LE + + L+ ++K +  E  ++E    E +   +ELE+++ +L
Sbjct: 662 SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEEL 721

Query: 284 NEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEK 343
              + AL++E + L  ++ ELE    E  +E  E+   ++ L ++    ++ + +L EE 
Sbjct: 722 KRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEI 781

Query: 344 DEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLK 403
           +E+  + +     L++ E E+ +  R  + +E      +     L +EI EL + + +L+
Sbjct: 782 EELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELE 841

Query: 404 ASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE 463
               + +++ ++L  EL + K  L++   E++    +L E  +   +L  +L E+E    
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901

Query: 464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEK--ELMQKNLLEAKRNADDLRAKMESI 521
           E  EE+ K R   E L    +++E  +  L EE   E       E +R  + L  ++E++
Sbjct: 902 ELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEAL 961

Query: 522 GFNSDRALSMLKNTAAM 538
           G  + RA+   +     
Sbjct: 962 GPVNLRAIEEYEEVEER 978

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 65.5 bits (160), Expect = 5e-11
 Identities = 71/301 (23%), Positives = 131/301 (43%), Gaps = 1/301 (0%)

Query: 223 DIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNK 282
            IE  +++   L K L  L KE ++L+ +++ + KE   +  Q S  +     LE EV +
Sbjct: 685 KIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQ 744

Query: 283 LNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEE 342
           L E +  L KE   L  +I ELE    EA +E  E   EI+ L  Q  + ++ ++ L E 
Sbjct: 745 LEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREA 804

Query: 343 KDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKL 402
            DE+   L        +    +  L R     E R    + +I  L ++I  L   + +L
Sbjct: 805 LDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEEL 864

Query: 403 KASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRF 462
           +    + + + + L+NE A  + AL     E +   ++L E      +LR +L E+ ++ 
Sbjct: 865 EELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKL 924

Query: 463 EEKVEELAKTRNERETLVD-LRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521
            +    L       + L + L ++    +      +  ++ +  EA+R    L  K++ +
Sbjct: 925 AQLELRLEGLEVRIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKEL 984

Query: 522 G 522
           G
Sbjct: 985 G 985

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 65.1 bits (159), Expect = 9e-11
 Identities = 73/346 (21%), Positives = 161/346 (46%), Gaps = 13/346 (3%)

Query: 127  EGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLK 186
              L+ +  + E E+ +LK+E+  L   +E  R +L +  R+ + +K EL    +E  +L+
Sbjct: 677  AELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQ 736

Query: 187  DRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETD 246
             RL E+E +   L  E+  LQ     L++E    +  +   K+E   L ++   L++E +
Sbjct: 737  SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796

Query: 247  DLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELEN 306
            +L+ +++   +  +A+E +    +   + LE+E+ +L E +  L+++   L  ++ ELE 
Sbjct: 797  ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856

Query: 307  SCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAK 366
                   E  E+  E++ L  ++ E +  ++ L EEK+E+   L +    L + + EI K
Sbjct: 857  -------ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909

Query: 367  LLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ----LVNELAD 422
            L     ++E +    + E+  L +E+ E  +   + +     ++ + +      VN  A 
Sbjct: 910  LRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRA- 968

Query: 423  YKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEE 468
                 ++     +      ++  ++   L   + E++K   E+ +E
Sbjct: 969  -IEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKE 1013

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 1e-09
 Identities = 80/365 (21%), Positives = 170/365 (46%), Gaps = 20/365 (5%)

Query: 150  LMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSD 209
            + G   N+R  L+Q    K+L + EL     +  +L++ L  ++ + R+L   +  L+  
Sbjct: 652  ITGGSRNKRSSLAQKRELKELEE-ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ 710

Query: 210  YGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQ 269
               L+++  E   ++ A ++E   L  RL  LE+E ++L+ +++ + +    +E +    
Sbjct: 711  LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 270  KVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQE 329
            +    +L++E+ +L E   ALQ+E + L  ++ E E        E   +    + L  + 
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 330  REKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLH 389
             E ++ IE L E+ DE+   LE+    L++ + E+ +L  EK ++E+     + E   L 
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 390  KEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGM 449
            +E+ EL   + +LK      +++ ++L  +L   +  L +   E +  ++D  E      
Sbjct: 891  EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLET----- 945

Query: 450  DLRLKLSEMEKR--------------FEEKVEELAKTRNERETLVDLRKKMESHIGLLAE 495
            +L  ++  +E+               +EE  E   + +++RE L + ++K+   I  L +
Sbjct: 946  ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDK 1005

Query: 496  EKELM 500
            EK   
Sbjct: 1006 EKRER 1010

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 60.8 bits (148), Expect = 2e-09
 Identities = 67/328 (20%), Positives = 137/328 (41%), Gaps = 25/328 (7%)

Query: 274 DELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQ 333
           +ELE+++ +L E +  L+K    L  ++ ELE    +   E  E+  +I AL       +
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 334 KRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIG 393
             +E+L E   ++S  L        + E EI +L     + EE     + EI  L  +I 
Sbjct: 740 AEVEQLEERIAQLSKELT-------ELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792

Query: 394 ELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRL 453
           +L++ +  L+ +  + + +   L  E A+ +  L+          + L++  +   +L  
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852

Query: 454 KLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADD 513
            +  +    EE  E + +  +E E L++ R  +E  + LL  E E + + L E +    +
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912

Query: 514 LRAKMESIGFNSDRALSMLKNTAAMVCQS-ENDIDGQQELVVDEKKLQGETDQYAAEFQA 572
           LR ++E         L        +  +  E  ID  QE +         +++Y+   + 
Sbjct: 913 LRRELE--------ELREKLAQLELRLEGLEVRIDNLQERL---------SEEYSLTLEE 955

Query: 573 IVNAFRNREKLVEDMKHRVELMQNSVEA 600
                   E   E+ + R++ ++N ++ 
Sbjct: 956 AEALENKIEDDEEEARRRLKRLENKIKE 983

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 53.2 bits (128), Expect = 3e-07
 Identities = 87/357 (24%), Positives = 163/357 (45%), Gaps = 27/357 (7%)

Query: 45   SEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQK 104
             E++K LK+    L     E R+Q+E L +    L+ EL+    E  +L + L  E +++
Sbjct: 687  EEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLE-ELEEE 745

Query: 105  VSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQA 164
            +    E+       + +++E  E L+E   + + EI  L+ +   L   +E   E L +A
Sbjct: 746  LEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEA 805

Query: 165  CREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDI 224
             R  D ++ EL+   +   RL+  + E+E +   L  ++  L+ +   L+KE  E   ++
Sbjct: 806  ERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEEL 865

Query: 225  EAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLN 284
            E  + EK  L   L  LE+E ++L+ +++ +  E                EL++E+ KL 
Sbjct: 866  EELEAEKEELEDELKELEEEKEELEEELRELESEL--------------AELKEEIEKLR 911

Query: 285  EIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKD 344
            E +  L+ + + L  ++ ELE    E ++E+ E  LE +        + +R+E  IE   
Sbjct: 912  ERLEELEAKLERLEVELPELE----EELEEEYEDTLETEL-----EREIERLEEEIEALG 962

Query: 345  EISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFK 401
             ++    +A+   ++ E    +L  ++ D+EE K      I  L KE  E     F 
Sbjct: 963  PVN---LRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFD 1016

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 53.1 bits (128), Expect = 4e-07
 Identities = 75/369 (20%), Positives = 160/369 (43%), Gaps = 36/369 (9%)

Query: 120  TQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQV 179
                   + L E     + E+ +L+SE+  +   ++   + LS A R+   ++ E++   
Sbjct: 670  RSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLE 729

Query: 180  KEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLV 239
            +E  +LK+RL E+E    +L  EI  ++S+   L+    E + D+   ++    L     
Sbjct: 730  QEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDL----- 784

Query: 240  GLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCG 299
                E      +I  I  E + +E + S  +    E+E+++N+L      L+KE + L  
Sbjct: 785  ----EARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840

Query: 300  KILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDD 359
            + ++L+                     +Q +  +K IE L  +K+E+   LE+    L D
Sbjct: 841  QRIDLK---------------------EQIKSIEKEIENLNGKKEELEEELEELEAALRD 879

Query: 360  KEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNE 419
             E  +  L +E++++E +    + +I  L  +I + R  + +LKA     +++  ++ + 
Sbjct: 880  LESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDP 939

Query: 420  LADYKS------ALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTR 473
              + +       +L+    E     +++       M    +  E+ KR +E  E+ AK  
Sbjct: 940  KGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLE 999

Query: 474  NERETLVDL 482
             ER+ +++ 
Sbjct: 1000 EERKAILER 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 52.8 bits (127), Expect = 5e-07
 Identities = 61/271 (22%), Positives = 123/271 (45%), Gaps = 23/271 (8%)

Query: 167 EKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEA 226
           E  L+   L+   +E   L++ L E E +   L +E+  L+     L+ E +E + +IE 
Sbjct: 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEE 285

Query: 227 FKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNK---- 282
            +KE   L   +  LE++   L+ ++  + ++   +E Q  E +   DEL +E+ +    
Sbjct: 286 LQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEK 345

Query: 283 ---LNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERL 339
              L E + +L+ E + L  ++ ELE+   E  ++   +  ++  L  Q       IERL
Sbjct: 346 LEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERL 405

Query: 340 IEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVV 399
               + +  R E              +L +E  ++ ++   ++ E+  L  E+ EL + +
Sbjct: 406 EARLERLEDRRE--------------RLQQEIEELLKKL--EEAELKELQAELEELEEEL 449

Query: 400 FKLKASCRDQQDKSKQLVNELADYKSALDQA 430
            +L+      ++  ++L  EL + + ALD A
Sbjct: 450 EELQEELERLEEALEELREELEEAEQALDAA 480

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 74/346 (21%), Positives = 152/346 (43%), Gaps = 15/346 (4%)

Query: 174 ELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGL 233
             + Q ++A   +D   E+  +    R E+  L+++   L++   E + + E   +E   
Sbjct: 224 RYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRD 283

Query: 234 LGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKE 293
           L +RL  LE+E DDL  +  +   +  A+E +  E +  ++EL   + +      A  +E
Sbjct: 284 LRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEE 343

Query: 294 EKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKA 353
            + L     +LE    E  +E  E+  E++   +   ++++ IE L EE +E+  R   A
Sbjct: 344 AESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDA 403

Query: 354 VVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKS 413
            V L + E  + +L  E++++ ER+   +  +    + + E   ++   K     Q  + 
Sbjct: 404 PVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEG 463

Query: 414 KQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTR 473
              V  + + +  +++   E +              DL  ++ E+E+R E   E+L +  
Sbjct: 464 SPHVETIEEDRERVEELEAELE--------------DLEEEVEEVEERLER-AEDLVEAE 508

Query: 474 NERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKME 519
           +  E L + R+ +E  I    E  E  ++   E +  A +L A+ E
Sbjct: 509 DRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 64/314 (20%), Positives = 140/314 (44%), Gaps = 9/314 (2%)

Query: 274 DELEKEVNKLNEIVLALQKE-----EKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQ 328
           ++LE++  K       L+ E       +L  K+ EL     E  +E   +  E++ L ++
Sbjct: 203 EKLERQAEKAERY-QELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEE 261

Query: 329 EREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGL 388
             E +K IE L  E +E+   LE+    L + + EI +L  E + + ER    +NE+  L
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEEL 321

Query: 389 HKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSG 448
            + + EL++ +  LK    +++   ++L   LA+ + A ++   +     ++L+E  ++ 
Sbjct: 322 EERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEA- 380

Query: 449 MDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAK 508
             LR +L+E+E    E   EL + + E E+L +  +++   +  L EE + ++  L E +
Sbjct: 381 --LREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQ 438

Query: 509 RNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAA 568
              ++L  ++E +    +     LK     + + + ++   ++ +   +      +    
Sbjct: 439 TELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQR 498

Query: 569 EFQAIVNAFRNREK 582
             Q +       E 
Sbjct: 499 ASQGVRAVLEALES 512

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 69/282 (24%), Positives = 121/282 (42%), Gaps = 20/282 (7%)

Query: 249 KLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSC 308
           + +   ++KEK A+E Q    +     LE+E+ KL E    + + EK L      LE   
Sbjct: 222 EYEGYELLKEKEALERQKEAIERQLASLEEELEKLTE---EISELEKRLEEIEQLLEELN 278

Query: 309 SEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLL 368
            +  D   E  L +K  + +   +   +ER I EK+     LE A   L   E EI KLL
Sbjct: 279 KKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKER---ELEDAEERLAKLEAEIDKLL 335

Query: 369 REKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALD 428
            E  ++E     +      L +E  EL++ +  L+A   +   +  +  +EL DY+  L+
Sbjct: 336 AEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLE 395

Query: 429 QATLERD----NAWKDLDEQRKSGM----------DLRLKLSEMEKRFEEKVEELAKTRN 474
           +   E +       +  +E ++              +  K++E+E+  E+K  E+ K   
Sbjct: 396 KLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEW 455

Query: 475 ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRA 516
           + E L     K E  +  L EE + ++K L + +R   +  A
Sbjct: 456 KLEQLAADLSKYEQELYDLKEEYDRVEKELSKLQRELAEAEA 497

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 8e-07
 Identities = 52/260 (20%), Positives = 121/260 (46%), Gaps = 8/260 (3%)

Query: 127 EGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVK------ 180
           E ++ +    E E+  L  E+S L   +E   + L +  ++   +  E   +VK      
Sbjct: 240 EAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGEL 299

Query: 181 --EASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRL 238
             E + L+  + E E +  +    +  L+++  +L  E  E + +IE  +K +  L +  
Sbjct: 300 EAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEY 359

Query: 239 VGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLC 298
             L++E +DL+ +++ + KE      +  + +   ++L++E+N+L   +  LQ+E + L 
Sbjct: 360 AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419

Query: 299 GKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLD 358
            ++ +L  + +    +  E+  E +    + ++++ ++E+L  +  +    L       D
Sbjct: 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYD 479

Query: 359 DKEGEIAKLLREKNDIEERK 378
             E E++KL RE  + E + 
Sbjct: 480 RVEKELSKLQRELAEAEAQA 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 75/354 (21%), Positives = 149/354 (42%), Gaps = 16/354 (4%)

Query: 30   GKTVALTHRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVE 89
            G   + +    ++   E+++ LK     L         +++ LSQ  +    ++     E
Sbjct: 665  GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKE 724

Query: 90   KSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSG 149
              +L  E     ++   LE E        +  +K   + L+    E E ++  L+  ++ 
Sbjct: 725  IEQLEQEEEKLKERLEELE-EDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALND 783

Query: 150  LMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSD 209
            L   + + R    QA         EL    +E SR++ RL E+E K   L  E   L+ +
Sbjct: 784  LEARLSHSRIPEIQA---------ELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKE 834

Query: 210  YGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQ 269
               L++++ +    I++ +KE   L  +   LE+E ++L+  ++ +      ++ +  E 
Sbjct: 835  IQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDEL 894

Query: 270  KVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQE 329
            +    ELE+++ +L   +   +K    L  K+  LE   SE  D K E     +  L  E
Sbjct: 895  EAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLE 954

Query: 330  --REKQKRIERLIEEKDEISHR----LEKAVVVLDDKEGEIAKLLREKNDIEER 377
              + + +R+E  I   + ++       E+ +  LD+ + + AKL  E+  I ER
Sbjct: 955  DVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILER 1008

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 62/268 (23%), Positives = 122/268 (45%), Gaps = 6/268 (2%)

Query: 131 EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLI 190
           EE  E E EI  LKSE+  L   +E  +E L +   E + ++GE+    +    L++ L 
Sbjct: 260 EELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELE 319

Query: 191 EMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKL 250
           E+E +   L+ +I  L+ +    +    E +  +   ++ K  L ++L  L +E ++L  
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379

Query: 251 KIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSE 310
            ++  + E  A   +   +    +EL++E+  L E +  L +  + L  ++ ELE    E
Sbjct: 380 ALREELAELEAELAEIRNEL---EELKREIESLEERLERLSERLEDLKEELKELEAELEE 436

Query: 311 AMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKL--- 367
              E  E+  E++ L +Q  E + R++ L  E  E+   L++    L   E  + +L   
Sbjct: 437 LQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAE 496

Query: 368 LREKNDIEERKVCQDNEISGLHKEIGEL 395
            R    +       ++ + G++  + EL
Sbjct: 497 QRASQGVRAVLEALESGLPGVYGPVAEL 524

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 51.3 bits (123), Expect = 1e-06
 Identities = 116/607 (19%), Positives = 243/607 (40%), Gaps = 62/607 (10%)

Query: 37  HRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAE 96
            R  +E+  E++ RL+   + L     E  +++E L      L  EL        EL  E
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL-------EELQEE 289

Query: 97  LSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIEN 156
           L    ++   LE E  L        ++E  E L+ E  E E  +  LK ++  L   +E 
Sbjct: 290 LLELKEEIEELEGEISL--------LRERLEELENELEELEERLEELKEKIEALKEELEE 341

Query: 157 ERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKE 216
               L +  +    ++   +   +   +L   L E+E     LR E+  L+++   ++ E
Sbjct: 342 RETLLEELEQLLAELEEAKE---ELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398

Query: 217 KNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDEL 276
             E   +IE+ ++    L +RL  L++E  +L+ +++ +  E   +  +  E +   +EL
Sbjct: 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEEL 458

Query: 277 EKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQK-- 334
              + +L   +  LQ+E + L  ++  LE        E+      ++A+L+         
Sbjct: 459 RDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQ-GVRAVLEALESGLPGV 517

Query: 335 --RIERLIEEKDEISHRLEKA-------VVVLDDKEGEIAKLLREKNDIEERKVCQDNEI 385
              +  LI+ K++    LE A       VVV +++  + A    ++N          + I
Sbjct: 518 YGPVAELIKVKEKYETALEAALGNRLQAVVVENEEVAKKAIEFLKENKAGRATFLPLDRI 577

Query: 386 SGLHKEIGELRDVVFKLKASCRDQQDKSKQLV----------------NELADYKSA--- 426
             L     +       L +   D   K +  V                  LA        
Sbjct: 578 KPLRSLKSDAAPGFLGLASDLIDFDPKYEPAVRFVLGDTLVVDDLEQARRLARKLRIKYR 637

Query: 427 ---LDQATLERD-------NAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNER 476
              LD   +E            +    Q++   +L  +L+E+E + E+  EEL   +NE 
Sbjct: 638 IVTLDGDLVEPSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNEL 697

Query: 477 ETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTA 536
            +L DL +++   +  L  + E +++ L   +   + L++++E +    +     L+   
Sbjct: 698 RSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQ 757

Query: 537 AMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQN 596
             + + E +++  +E      KL+ E ++   + QA+       E+ +E+ + R++ ++ 
Sbjct: 758 ERLEELEEELESLEE---ALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALER 814

Query: 597 SVEAQKK 603
            +E+ ++
Sbjct: 815 ELESLEQ 821

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.8 bits (122), Expect = 2e-06
 Identities = 56/261 (21%), Positives = 125/261 (47%), Gaps = 2/261 (0%)

Query: 274 DELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQ 333
           +EL++E+ +  E +  L  E + L  K+ EL    SE  +E  E+  E+ AL ++    +
Sbjct: 242 EELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLE 301

Query: 334 KRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIG 393
           ++ + L E    +  +LE+    L++ E ++ +L  E  ++EE+      E+  L  E+ 
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361

Query: 394 ELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRL 453
           EL   + +L++   + +++ + L +++A  +  +     E +     L+        L+ 
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQ 421

Query: 454 KLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADD 513
           ++ E+ K+ EE   EL + + E E L +  ++++  +  L E  E +++ L EA++  D 
Sbjct: 422 EIEELLKKLEEA--ELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDA 479

Query: 514 LRAKMESIGFNSDRALSMLKN 534
              ++  +    D    + +N
Sbjct: 480 AERELAQLQARLDSLERLQEN 500

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 104/403 (25%), Positives = 181/403 (44%), Gaps = 42/403 (10%)

Query: 131 EEKNERENEIIALKSEVSGLMGNIEN---ERERLSQACREKDLMKGELDCQVKEASRLKD 187
           EEK ER  E+     E+   +  +E      E       E + +K  L     E  +L+ 
Sbjct: 334 EEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPE--KLEK 391

Query: 188 RLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGL--LGKRLVGLEKET 245
            L E+E  +  +  EI  + +  G LKKE  E    IE  KK KG   +  R +  E   
Sbjct: 392 ELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRK 451

Query: 246 DDLK---LKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKIL 302
           + L+    ++K I KE   IE +  + +    ELEK + K +E++     + K L  ++ 
Sbjct: 452 ELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELI-----KLKELAEQLK 506

Query: 303 ELENSCSEAMDEKLEMVLE----IKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLD 358
           ELE    +   E+LE   E    +K  L + + + K +++ +E+ +E+  +L +    LD
Sbjct: 507 ELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLD 566

Query: 359 DKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVN 418
           + E E+A+LL+E   +EE       E+    KE+    +   +LK + ++ + + K+L  
Sbjct: 567 ELEEELAELLKE---LEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKEL-- 621

Query: 419 ELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERET 478
                     +   E D A+++L E  K   +LR +L E+EK++ E  EE  + R E   
Sbjct: 622 ---------KKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE--EEYEELREEYLE 670

Query: 479 LVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521
           L          +  L  E E ++K   E K+  + L+ ++E  
Sbjct: 671 L-------SRELAGLRAELEELEKRREEIKKTLEKLKEELEER 706

Length = 880

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 49.7 bits (119), Expect = 5e-06
 Identities = 88/486 (18%), Positives = 207/486 (42%), Gaps = 55/486 (11%)

Query: 42  EDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGES 101
           E+  EQ +  +   D ++    E+R+++E+L      L   ++    E+ EL  E+    
Sbjct: 226 EEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLR 285

Query: 102 DQKVSLEIEKGLFCVFLMTQMKEMGEGLDE-EKNERENEIIALKSEVSGLMGNIENERER 160
           ++   LE              +E  + L E   ++ + E +  + E       +E+  E 
Sbjct: 286 ERLEELE--------------EERDDLLAEAGLDDADAEAVEARRE------ELEDRDEE 325

Query: 161 LSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNER 220
           L     E  +     +   +EA  L++   ++E +   LR E   L+S+    ++   +R
Sbjct: 326 LRDRLEECRVAAQAHN---EEAESLREDADDLEERAEELREEAAELESELEEAREAVEDR 382

Query: 221 DGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEV 280
             +IE  ++E   L +R      +  + +  ++ + +E++ +  + +E +       + V
Sbjct: 383 REEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERV 442

Query: 281 NKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQ------- 333
            +   ++ A +  E   CG+ +E  +   E ++E  E V E++A L+   E+        
Sbjct: 443 EEAEALLEAGKCPE---CGQPVE-GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498

Query: 334 ----------KRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDN 383
                      RIERL E ++++   + +    +++K     +L     ++E     +  
Sbjct: 499 ERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKRE 558

Query: 384 EISGLHKEIGELRDVVFKLK------ASCRDQQDKSKQLVNELADYKSALDQATLERDNA 437
             +   +E  E R+ V +L           +  ++ + L+  +AD +  +++   E+  A
Sbjct: 559 AAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLR-EKREA 617

Query: 438 WKDLDEQRKSGM-DLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE 496
             +L+++R+  + + R +  E+E  F+E    + + R ++E   +  +++E  +  L EE
Sbjct: 618 LAELNDERRERLAEKRERKRELEAEFDE--ARIEEAREDKERAEEYLEQVEEKLDELREE 675

Query: 497 KELMQK 502
           ++ +Q 
Sbjct: 676 RDDLQA 681

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 59/302 (19%), Positives = 127/302 (42%), Gaps = 35/302 (11%)

Query: 135 ERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEG 194
           ER  EI  L+ ++  L   I    + L++  +E + ++ EL+   KE   L  ++  +  
Sbjct: 674 ERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRK 733

Query: 195 KERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKV 254
               L +E+  L+    +L KE  E + +IE  ++      + L   E E ++L+ +I  
Sbjct: 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI-- 791

Query: 255 IVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDE 314
                  ++ +    +   DEL  E+  LNE    L+                       
Sbjct: 792 -----EQLKEELKALREALDELRAELTLLNEEAANLR----------------------- 823

Query: 315 KLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDI 374
                  +++L  +    ++R+E L E+ +E+S  +E     +++ E  I +L  E   +
Sbjct: 824 -----ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEAL 878

Query: 375 EERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLER 434
              +   +  ++ L  E+ EL + + +L++   + + + ++L  +LA  +  L+   +  
Sbjct: 879 LNERASLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRI 938

Query: 435 DN 436
           DN
Sbjct: 939 DN 940

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.1 bits (115), Expect = 1e-05
 Identities = 42/213 (19%), Positives = 95/213 (44%), Gaps = 15/213 (7%)

Query: 320 LEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEER-K 378
            E   LL ++   +++ E +  +   +   LEK    + + E  + ++ +   ++ ++ K
Sbjct: 223 YEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIK 282

Query: 379 VCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAW 438
              + E   + ++IGEL   +  L+ S  +++ + +     LA  ++ +D+   E +   
Sbjct: 283 DLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELE 342

Query: 439 KDLDEQRKSG--------------MDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRK 484
           ++++E+RK                 DLR +L E++K F E  +EL   R + E L     
Sbjct: 343 REIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402

Query: 485 KMESHIGLLAEEKELMQKNLLEAKRNADDLRAK 517
           +++  +  L EE + + + L +       + AK
Sbjct: 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAK 435

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 47.8 bits (114), Expect = 1e-05
 Identities = 84/418 (20%), Positives = 188/418 (44%), Gaps = 25/418 (5%)

Query: 118 LMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQ-ACREKDLMKGELD 176
           L   +KE+ +    +  E E ++  L  ++  L+  +E E + L +    +++  + EL+
Sbjct: 172 LSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELE 231

Query: 177 CQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGK 236
            +++        L E + +   L++ +L ++S      K + E   ++E   +E     +
Sbjct: 232 QEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIE 291

Query: 237 RLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIV--------- 287
           RL  LE+E ++L+ +++ +      +E    + K + + LEK   KL ++          
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351

Query: 288 -----LALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEE 342
                  L++  K L  ++ ELE    +A++   ++   I+ L ++  E    +E + EE
Sbjct: 352 KNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEE 411

Query: 343 KDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKE--------IGE 394
            +E+   LE+    L++ E EI KL  + N +E +++    E++G  ++          E
Sbjct: 412 LEELEKELEELERELEELEEEIKKLEEQINQLESKEL-MIAELAGAGEKCPVCGQELPEE 470

Query: 395 LRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLK 454
               + +L     ++ ++      E A+ +  +++   E     ++L E  +    L+ +
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530

Query: 455 LSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNAD 512
           L E  ++ E  +EEL + + E+  L  L++++      L E KEL+++  L   R  +
Sbjct: 531 LEEKLEKLENLLEELEELK-EKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEE 587

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.7 bits (114), Expect = 2e-05
 Identities = 59/296 (19%), Positives = 123/296 (41%), Gaps = 16/296 (5%)

Query: 319 VLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERK 378
           VL ++ L ++  E Q+ ++   EE +E++  L++    L++   E+++L  E  ++++  
Sbjct: 231 VLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKEL 290

Query: 379 VCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAW 438
               NEIS L ++   LR           + + + ++L  +L + +S LD+   E     
Sbjct: 291 YALANEISRLEQQKQILR-------ERLANLERQLEELEAQLEELESKLDELAEELAELE 343

Query: 439 KDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKME-------SHIG 491
           + L+E ++    L  +L E+E   EE    L +   + ETL     ++E       + I 
Sbjct: 344 EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403

Query: 492 LLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQE 551
            L    E ++      ++  ++L  K+E       +A            Q E +   +  
Sbjct: 404 RLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEAL 463

Query: 552 LVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFW 607
             + E+  + E    AAE +  +   + R   +E ++  +E     V+A  K    
Sbjct: 464 EELREELEEAEQALDAAERE--LAQLQARLDSLERLQENLEGFSEGVKALLKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 75/346 (21%), Positives = 145/346 (41%), Gaps = 36/346 (10%)

Query: 211 GRLKKEKNERDGDIEA--FKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEK-NAIEMQNS 267
            R+  ++      ++A   +KE+  L +RL GLE E  +L  +I+   +++  A E ++ 
Sbjct: 179 ERVLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDE 238

Query: 268 EQKVIN---------DELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEM 318
             +V+          + LE E+  L E +   ++E + L  ++ +L     E  +E+ ++
Sbjct: 239 ADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDL 298

Query: 319 VLEIKALLDQEREK-QKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEER 377
           + E   L D + E  + R E L +  +E+  RLE+  V       E   L  + +D+EER
Sbjct: 299 LAEA-GLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEER 357

Query: 378 KVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNA 437
                 E + L  E+ E R+ V   +    + +++ ++L     D    L  A    +  
Sbjct: 358 AEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEEL 417

Query: 438 WKDLDEQRKSGMDLRLKLSEMEKRFEEK---------------------VEELAKTRNER 476
            ++ DE R+   +L   L    +R EE                      VE + + R   
Sbjct: 418 REERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERV 477

Query: 477 ETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG 522
           E L    + +E  +  + E  E   ++L+EA+   + L  + E + 
Sbjct: 478 EELEAELEDLEEEVEEVEERLERA-EDLVEAEDRIERLEERREDLE 522

Length = 880

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 35/242 (14%), Positives = 93/242 (38%), Gaps = 25/242 (10%)

Query: 300 KILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDD 359
           ++  L+   S    E   +   +  L  +  +  ++I  + +E +++    EK    L++
Sbjct: 682 RLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEE 741

Query: 360 KEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQ-DKSKQLVN 418
            E +++ L +E  +++      +  I  L +++ +L + +  L+A     +  + +  ++
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELS 801

Query: 419 ELADYKSALDQATLERDNAWK---------------------DLDEQRKSGMDLRLKLSE 457
           +L +  S ++    E +                         DL EQ KS   +  ++  
Sbjct: 802 KLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKS---IEKEIEN 858

Query: 458 MEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAK 517
           +  + EE  EEL +       L      ++     L  +   +++ + E +   +  R +
Sbjct: 859 LNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKR 918

Query: 518 ME 519
           + 
Sbjct: 919 LS 920

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 80/347 (23%), Positives = 145/347 (41%), Gaps = 20/347 (5%)

Query: 238 LVGLEKETD--DLKLKIKVIVKEKNAIEMQNSEQKVIN---DELEKEVNKLNEIVLALQK 292
           LV LEKE D  DL L +      +N +E    E+  +      LE +V+ +   +  L+ 
Sbjct: 119 LVTLEKEDDGDDLLLVVPKATILQNQLEGCQRERNDLMKKFLALEGDVSDMRSRIEQLET 178

Query: 293 EEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEK 352
             +    K  ELE    EA      M  E  ALL Q  E Q+RI  L ++   ++ + ++
Sbjct: 179 ALRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQE 238

Query: 353 AVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDK 412
              VL+  +   A+L R K ++++R      +      E  +L+    +L    R  Q++
Sbjct: 239 NDRVLEGTQDIEAELERMKGELKQRLKKMTIQRRDEETERIDLQLENEQLHEDLRTLQER 298

Query: 413 SKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKT 472
            +    +       L      RD+   +L + R     + L+LS++    +E   + A+ 
Sbjct: 299 LESSQQKAGLLGEELASLGSLRDHTIAELHQSRLESAQMSLQLSQLNLALKEGQSQWAQE 358

Query: 473 RN--------ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN 524
           R         +++ +  L  ++      L EE+   +K  +E     D  R ++      
Sbjct: 359 RETLRQSAEADKDRIQKLSAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSE---- 414

Query: 525 SDRALSMLKNTAAMVCQSEND--IDGQQELVVDEKKLQGETDQYAAE 569
           + R LS L+ +A  V Q E +   + +QEL+   + L+   D+ A E
Sbjct: 415 NRRELSELR-SALRVLQKEKEQLQEEKQELLDYIRVLELRLDKEADE 460

Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein coexpressed by Mus musculus (CoCoA/CALCOCO1). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1, and thus enhances transcriptional activation by a number of nuclear receptors. CALCOCO1 has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region. Length = 546

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.4 bits (100), Expect = 7e-04
 Identities = 99/475 (20%), Positives = 201/475 (42%), Gaps = 31/475 (6%)

Query: 64  EQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMK 123
           E+ + + +L +    L  +L        +L  +L     +   L  EK      L  ++K
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK 364

Query: 124 EMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEAS 183
           E+ E L+E + E E  +  LK     L   I+  +E L++     + ++ EL+   KE  
Sbjct: 365 ELEERLEELEKELEKALERLK----QLEEAIQELKEELAELSAALEEIQEELEELEKELE 420

Query: 184 RLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDG--------DIEAFKKEKGLLG 235
            L+  L E+E + + L  +I  L+S    + +     +           E  K+   L  
Sbjct: 421 ELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYE 480

Query: 236 KRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEK 295
             L  LE+E    K + ++  + +   +     ++ + + LE E     E+   L+K E 
Sbjct: 481 LELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLEN 540

Query: 296 VLCGKILELENSCSEAMDEKLEM----VLEIKALLDQEREKQKRIERLIEEKDEISHRLE 351
           +L       E    + + E+L      + E+K LL++ R  + R E  +EE  E    L+
Sbjct: 541 LLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE-ELEELRERLKELK 599

Query: 352 KAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQD 411
           K +  L+++  ++ +LL+     E       NE+    +E+    + +          Q 
Sbjct: 600 KKLKELEERLSQLEELLQSLELSEAE-----NELEEAEEELESELEKLNLQAELEELLQA 654

Query: 412 KSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAK 471
             ++L  ++ + ++ + +  L+R    + L+E+ +    L  +L    ++  E++EEL K
Sbjct: 655 ALEELEEKVEELEAEIRRE-LQRIENEEQLEEKLEELEQLEEEL----EQLREELEELLK 709

Query: 472 TRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSD 526
              E E L++  +  ++ +  L +E E ++K    A    ++LR K+   G  +D
Sbjct: 710 KLGEIEQLIEELESRKAELEELKKELEKLEK----ALELLEELREKLGKAGLRAD 760

Length = 908

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.4 bits (100), Expect = 8e-04
 Identities = 88/396 (22%), Positives = 169/396 (42%), Gaps = 31/396 (7%)

Query: 131 EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLI 190
           + + ER  + I     +  L+   E E E +                  +E + +   L 
Sbjct: 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVL-----------------REINEISSELP 217

Query: 191 EMEGKERNLRSEILVLQSDYGR---LKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDD 247
           E+  +   L  E+  L+        L+KE    +G     +++   L +R+  L+KE ++
Sbjct: 218 ELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE 277

Query: 248 LKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENS 307
           L+ K+K + KE      +  +     +E   E+ ++ + +  L++E   +  +I ELE  
Sbjct: 278 LEEKVKEL-KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEK 336

Query: 308 CSEA--MDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIA 365
                 + +KL+ + +    L++  E  +  +   EE + +  RL    +  +  E E+ 
Sbjct: 337 EERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRL--TGLTPEKLEKELE 394

Query: 366 KLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKS 425
           +L + K +IEE        I  L KEI EL+  + +LK +        ++L  E    K 
Sbjct: 395 ELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE--HRKE 452

Query: 426 ALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKK 485
            L++ T E     K+L E  +    LR +L E+EK   +K  EL K +   E L +L +K
Sbjct: 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRELEK-VLKKESELIKLKELAEQLKELEEK 511

Query: 486 MESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI 521
           ++ +     EE E   +   + K     L+ +++S+
Sbjct: 512 LKKYN---LEELEKKAEEYEKLKEKLIKLKGEIKSL 544

Length = 880

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 60/272 (22%), Positives = 123/272 (45%), Gaps = 15/272 (5%)

Query: 120 TQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREK----------D 169
            +++E  E L +E  E   +I AL+ +++ L   +E   ER++Q  +E           +
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 170 LMKGELDCQVKEASR----LKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIE 225
               E + ++ EA      L+ ++ +++ + + LR  +  L+++   L +E       +E
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLE 827

Query: 226 AFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNE 285
           + ++      +RL  LE++ ++L   I+ +  E   +E    E +   + L  E   L E
Sbjct: 828 SLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEE 887

Query: 286 IVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEE-KD 344
            +  L+ E + L  ++ ELE+  SE   E  E+  ++  L  +    + RI+ L E   +
Sbjct: 888 ALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSE 947

Query: 345 EISHRLEKAVVVLDDKEGEIAKLLREKNDIEE 376
           E S  LE+A  + +  E +  +  R    +E 
Sbjct: 948 EYSLTLEEAEALENKIEDDEEEARRRLKRLEN 979

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 41.6 bits (98), Expect = 0.001
 Identities = 79/332 (23%), Positives = 145/332 (43%), Gaps = 34/332 (10%)

Query: 51  LKSLNDLLVHRSHEQRQQVESLS-QAKAAL----------EAELSLFGV-------EKSE 92
           L  L D+L    +E  +Q++SL  QA+ A           E EL+L  +       E  E
Sbjct: 188 LDRLEDIL----NELERQLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEE 243

Query: 93  LLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMG 152
           L  EL    ++   L  E       L     E+ E L+EE  E + E+ AL +E+S L  
Sbjct: 244 LQEELKEAEEELEELTAELQELEEKLEELRLEVSE-LEEEIEELQKELYALANEISRLEQ 302

Query: 153 NIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGR 212
             +  RERL+   R+ + ++ +L+    +   L + L E+E        ++  L+ +   
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELE-------EKLEELKEELES 355

Query: 213 LKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVI 272
           L+ E  E + ++E  +     L ++L  L  +   L+L+I  +  E   IE   +  + +
Sbjct: 356 LEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE---IERLEARLERL 412

Query: 273 NDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQE-RE 331
            D  E+   ++ E++  L++ E       LE      E + E+LE + E    L +E  E
Sbjct: 413 EDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472

Query: 332 KQKRIERLIEEKDEISHRLEKAVVVLDDKEGE 363
            ++ ++    E  ++  RL+    + ++ EG 
Sbjct: 473 AEQALDAAERELAQLQARLDSLERLQENLEGF 504

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 90/416 (21%), Positives = 184/416 (44%), Gaps = 45/416 (10%)

Query: 153 NIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGR 212
            I+   ERL +  +  + ++  +  + KE   +   + E+  +   LR E+  L+ +   
Sbjct: 173 EIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKE 232

Query: 213 LKKEKNERDG---DIEAFKKEKGLLGKRLVGLEKETDDLKLKIKV---IVKEKNAIEMQN 266
           L++ K E +    ++E+ +  K  L +++  LE+  ++LK +I+     VKE   ++ + 
Sbjct: 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKA 292

Query: 267 SEQKVINDELEKEVNKLNEIVLALQKEEKVLCG---KILELENSCSEA--MDEKLEMVLE 321
            E   +++  E+ +++L EI   L + E+ + G   +I ELE        + +KL+ + +
Sbjct: 293 EEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEK 352

Query: 322 IKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQ 381
               L++  E  +  +   EE + +  RL    +  +  E E+ +L + K +IEE     
Sbjct: 353 RLEELEERHELYEEAKAKKEELERLKKRL--TGLTPEKLEKELEELEKAKEEIEEEISKI 410

Query: 382 DNEISGLHKEIGELRDVVFKLKAS-------------------CRDQQDKSKQLVNELAD 422
              I  L KEI EL+  + +LK +                     +   + K++  EL +
Sbjct: 411 TARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKE 470

Query: 423 YKSALDQATLERDNAWKDLDEQRK--SGMDLRLKLSEMEKRFEE-KVEELAKTRNERETL 479
            +    +   E     K L ++ +     +L  +L E+E++ ++  +EEL K   E E L
Sbjct: 471 IEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKL 530

Query: 480 VDLRKKMESHIGLLAEE----------KELMQKNLLEAKRNADDLRAKMESIGFNS 525
            +   K++  I  L +E             ++K L E +    +L  ++E +GF S
Sbjct: 531 KEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFES 586

Length = 880

>gnl|CDD|221952 pfam13166, AAA_13, AAA domain

 Score = 41.1 bits (97), Expect = 0.002
 Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 18/181 (9%)

Query: 225 EAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLN 284
           E +++    L + +   E   +    +++ I+      E +NSE K+  +EL+  +  L 
Sbjct: 278 EEYQELIEQLEELIDKYESHIEKALEELESIL----DTEKENSEFKLDVEELKALLEALE 333

Query: 285 EIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQE----REKQKRIERLI 340
           EI+    ++   L  K+ +   S S  ++   +++  I  ++D      RE  ++I+ L 
Sbjct: 334 EILEKNLQK---LEEKLKDP--STSIELESITDLIESINDIIDAINELIREHNEKIDNLK 388

Query: 341 EEKDEI-----SHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGEL 395
           +EK++       H + +    +D  + E   L +  N +E+     + EI  L KEI EL
Sbjct: 389 KEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKEL 448

Query: 396 R 396
            
Sbjct: 449 E 449

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. This family includes the PrrC protein that is thought to be the active component of the anticodon nuclease. Length = 713

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 77/365 (21%), Positives = 160/365 (43%), Gaps = 44/365 (12%)

Query: 62  SHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQ 121
            HE  ++ ++  +    L+  L+    EK E   E   ++ +++  EI K          
Sbjct: 360 RHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK---------- 409

Query: 122 MKEMGEGLDEEKNERENEIIALKSE-----VSGLMGNIENERERLSQACREKDLMKGELD 176
           +      L +E  E +  I  LK       V G     E+ +E L +   E   ++ EL 
Sbjct: 410 ITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELK 469

Query: 177 CQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDG-DIEAFKKEKGLLG 235
              ++  +L+  L E+E K     SE++ L+    +LK+ + +    ++E  +K+     
Sbjct: 470 EIEEKERKLRKELRELE-KVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKA---- 524

Query: 236 KRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEK 295
           +    L+++   LK +IK + KE   +E           EL+K++ +L + +  L++E  
Sbjct: 525 EEYEKLKEKLIKLKGEIKSLKKELEKLE-----------ELKKKLAELEKKLDELEEELA 573

Query: 296 VLCGKILELENSCSEAMDEKLEMV-------LEIKALLDQEREKQKRIERLIEEKDEISH 348
            L  ++ EL     E ++E+L+ +       LE+K    +   ++K +++L EE D+   
Sbjct: 574 ELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFE 633

Query: 349 RLEKAVVVLDDKEGEIAKLLREKND-----IEERKVCQDNEISGLHKEIGELRDVVFKLK 403
            L +    L++   E+ +L ++ ++     + E  +    E++GL  E+ EL     ++K
Sbjct: 634 ELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK 693

Query: 404 ASCRD 408
            +   
Sbjct: 694 KTLEK 698

Length = 880

>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 94/429 (21%), Positives = 186/429 (43%), Gaps = 36/429 (8%)

Query: 119 MTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQ 178
           + ++KE  E L++E    E     L+ ++  L   IE  ++ + +   EK     EL  +
Sbjct: 233 LEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEE-LEEKVKELKELKEK 291

Query: 179 VKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRL 238
            +E  +L +   E   + R +   +    S          ER  ++E  ++    L K+L
Sbjct: 292 AEEYIKLSEFYEEYLDELREIEKRL----SRLEEEINGIEERIKELEEKEERLEELKKKL 347

Query: 239 VGLEKETDDLKLKIK----VIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEE 294
             LEK  ++L+ + +       K++    ++     +  ++LEKE+ +L +    +++E 
Sbjct: 348 KELEKRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEI 407

Query: 295 KVLCGKILELENSCSEAMDEKLEMVL---------------EIKALLDQEREKQKRIERL 339
             +  +I EL+    E      E+                   K LL++   + KRIE+ 
Sbjct: 408 SKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKE 467

Query: 340 IEEKDEISHRLEKAVVVLDDKEGEIAKLLRE-------KNDIEERKVCQDNEISGLHKEI 392
           ++E +E   +L K +  L+    + ++L++        K   E+ K     E+    +E 
Sbjct: 468 LKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEY 527

Query: 393 GELRDVVFKLKA---SCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQR-KSG 448
            +L++ + KLK    S + + +K ++L  +LA+ +  LD+   E     K+L+E   +S 
Sbjct: 528 EKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESV 587

Query: 449 MDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAK 508
            +L  +L E+E  + E + EL     E E      KK+E  +    EE    +K L E +
Sbjct: 588 EELEERLKELEPFYNEYL-ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELR 646

Query: 509 RNADDLRAK 517
           +  ++L  K
Sbjct: 647 KELEELEKK 655

Length = 880

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 56/388 (14%), Positives = 130/388 (33%), Gaps = 4/388 (1%)

Query: 126  GEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRL 185
               + E   +       L+S  +   G  +        A + +         +   A + 
Sbjct: 622  RAKVVEGILKDTELTKLLESAKAKESGLRKGVSLEEGLAEKSELKASLSELTKELLAEQE 681

Query: 186  KDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKET 245
                 E E  +  +      ++    R+K+E  +   + E    +K    +  +  E + 
Sbjct: 682  LQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKL 741

Query: 246  DDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELE 305
             + K+K K   +EK+ ++ +  E++     L+++     E      K E+    K+   E
Sbjct: 742  LEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQE 801

Query: 306  NSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIA 365
                   +E  E    ++       +++K  E  +EE        +K   + +++   + 
Sbjct: 802  EELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLE 861

Query: 366  KLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKS 425
            + + ++  ++E       E     K   EL     K K   ++ +++S++          
Sbjct: 862  EEITKEELLQELL--LKEEELEEQKLKDELESKEEKEKEEKKELEEESQKDNLLEEKENE 919

Query: 426  ALDQATLERDNAWKDLDEQRKSGM--DLRLKLSEMEKRFEEKVEELAKTRNERETLVDLR 483
              ++   E     K   E  +  +      +  E  K  EE+  +      E    V+L 
Sbjct: 920  IEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLM 979

Query: 484  KKMESHIGLLAEEKELMQKNLLEAKRNA 511
               E         K+ ++K  LE ++  
Sbjct: 980  AIAEFEEKEERYNKDELKKERLEEEKKE 1007

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	629
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.88
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.87
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.84
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	99.8
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	99.77
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	99.74
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.74
PRK02224	880	chromosome segregation protein; Provisional	99.69
PRK04778	569	septation ring formation regulator EzrA; Provision	99.66
PRK02224	880	chromosome segregation protein; Provisional	99.66
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	99.58
PRK03918	880	chromosome segregation protein; Provisional	99.58
PRK03918	880	chromosome segregation protein; Provisional	99.51
PRK04778	569	septation ring formation regulator EzrA; Provision	99.49
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.49
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.46
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	99.4
PRK01156	895	chromosome segregation protein; Provisional	99.38
PRK01156	895	chromosome segregation protein; Provisional	99.37
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.35
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.34
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	99.32
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.31
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	99.31
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	99.1
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.07
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.06
KOG0996	1293	consensus Structural maintenance of chromosome pro	99.03
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.02
KOG0964	1200	consensus Structural maintenance of chromosome pro	99.01
KOG0933	1174	consensus Structural maintenance of chromosome pro	99.0
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	98.95
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.93
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	98.92
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.86
PRK04863	1486	mukB cell division protein MukB; Provisional	98.82
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.81
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.79
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	98.79
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	98.75
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.71
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	98.57
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	98.57
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	98.56
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.49
KOG0971	1243	consensus Microtubule-associated protein dynactin	98.47
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.46
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.43
PF00038	312	Filament: Intermediate filament protein; InterPro:	98.42
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	98.4
KOG0018	1141	consensus Structural maintenance of chromosome pro	98.38
PHA02562	562	46 endonuclease subunit; Provisional	98.36
KOG4643	1195	consensus Uncharacterized coiled-coil protein [Fun	98.32
PHA02562	562	46 endonuclease subunit; Provisional	98.31
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	98.29
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.26
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.24
PRK04863	1486	mukB cell division protein MukB; Provisional	98.2
COG1340	294	Uncharacterized archaeal coiled-coil protein [Func	98.1
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.01
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	98.01
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.97
PRK11637	428	AmiB activator; Provisional	97.95
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.93
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	97.92
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.89
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.88
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.83
PF06160	560	EzrA: Septation ring formation regulator, EzrA ; I	97.8
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.8
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.76
KOG1003	205	consensus Actin filament-coating protein tropomyos	97.74
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.71
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	97.71
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.7
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.68
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	97.67
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.64
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.62
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.62
KOG0018	1141	consensus Structural maintenance of chromosome pro	97.61
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	97.6
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	97.59
KOG4673	961	consensus Transcription factor TMF, TATA element m	97.5
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	97.49
PF05622	713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.45
PRK09039	343	hypothetical protein; Validated	97.38
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	97.35
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	97.34
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.28
PF14662	193	CCDC155: Coiled-coil region of CCDC155	97.27
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	97.24
PF05483	786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.19
COG4477	570	EzrA Negative regulator of septation ring formatio	97.07
COG5185	622	HEC1 Protein involved in chromosome segregation, i	97.03
PRK09039	343	hypothetical protein; Validated	96.97
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.84
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	96.77
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	96.76
COG4372	499	Uncharacterized protein conserved in bacteria with	96.73
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.7
PF09728	309	Taxilin: Myosin-like coiled-coil protein; InterPro	96.63
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	96.52
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.49
KOG1003	205	consensus Actin filament-coating protein tropomyos	96.44
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	96.43
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	96.41
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	96.31
COG4372	499	Uncharacterized protein conserved in bacteria with	96.11
PF13514	1111	AAA_27: AAA domain	95.92
PRK15374	593	pathogenicity island 1 effector protein SipB; Prov	95.8
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.73
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	95.68
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	95.64
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	95.57
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	95.29
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	95.21
COG4477	570	EzrA Negative regulator of septation ring formatio	95.14
KOG0963	629	consensus Transcription factor/CCAAT displacement	95.0
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	94.9
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	94.86
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	94.79
PRK11281	1113	hypothetical protein; Provisional	94.66
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	94.64
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	94.59
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	94.53
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.29
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.2
PRK11281	1113	hypothetical protein; Provisional	94.12
PF07111	739	HCR: Alpha helical coiled-coil rod protein (HCR);	94.02
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	93.91
PRK10929	1109	putative mechanosensitive channel protein; Provisi	93.88
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.73
PF05010	207	TACC: Transforming acidic coiled-coil-containing p	93.47
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	93.35
COG5185	622	HEC1 Protein involved in chromosome segregation, i	93.27
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	93.17
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	93.17
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	93.16
PF09789	319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.01
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.79
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	92.63
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.42
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	92.41
KOG0963	629	consensus Transcription factor/CCAAT displacement	92.17
PF06008	264	Laminin_I: Laminin Domain I; InterPro: IPR009254 L	92.13
PRK10869	553	recombination and repair protein; Provisional	92.06
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	92.02
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	91.96
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	91.8
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.76
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	91.69
KOG1937	521	consensus Uncharacterized conserved protein [Funct	91.09
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.34
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	90.28
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	90.2
PF11657	144	Activator-TraM: Transcriptional activator TraM	90.17
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	90.14
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	89.9
PF13514	1111	AAA_27: AAA domain	89.8
PRK09343	121	prefoldin subunit beta; Provisional	89.74
PF15066	527	CAGE1: Cancer-associated gene protein 1 family	89.4
PF09787	511	Golgin_A5: Golgin subfamily A member 5; InterPro:	89.33
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	89.2
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	89.03
COG4026	290	Uncharacterized protein containing TOPRIM domain,	88.93
PRK10929	1109	putative mechanosensitive channel protein; Provisi	88.83
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	88.52
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	88.08
PRK13895	144	conjugal transfer protein TraM; Provisional	87.51
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	87.41
PF13166	712	AAA_13: AAA domain	87.21
KOG1899	861	consensus LAR transmembrane tyrosine phosphatase-i	86.77
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	86.64
COG4026	290	Uncharacterized protein containing TOPRIM domain,	86.25
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	85.97
KOG0962	1294	consensus DNA repair protein RAD50, ABC-type ATPas	85.91
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	85.72
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	85.45
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	85.39
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	85.02
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	84.32
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	84.14
PF05384	159	DegS: Sensor protein DegS; InterPro: IPR008595 Thi	83.7
KOG4360	596	consensus Uncharacterized coiled coil protein [Fun	83.23
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	82.55
PF04582	326	Reo_sigmaC: Reovirus sigma C capsid protein; Inter	81.91
KOG4809	654	consensus Rab6 GTPase-interacting protein involved	81.0
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	80.72
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	80.64
PHA01750	75	hypothetical protein	80.45
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	80.33
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	80.01

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.88  E-value=2e-16  Score=194.30  Aligned_cols=70  Identities=7%  Similarity=0.132  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHhhccchHHHHHHHH----HHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHH---HHHHHHHHHHcc
Q 006828          508 KRNADDLRAKMESIGFNSDRALSMLK----NTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQY---AAEFQAIVNAFR  578 (629)
Q Consensus       508 ~k~i~~Lk~~I~~lg~vaiee~~~~k----er~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f---~~~f~~i~~~F~  578 (629)
                      ..++..++..|..||| ||++|+.++    +||+||..|++| ..++..|. +|.+|+..|..+|   ..+|..|+.+|+
T Consensus       964 ~~~~~~l~~~i~~lg~-aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~~~f~~~~~~F~~v~~~f~ 1042 (1179)
T TIGR02168       964 EDDEEEARRRLKRLEN-KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETLEEAIEEIDREARERFKDTFDQVN 1042 (1179)
T ss_pred             ccCHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999 999999999    999999999999 99999999 9999999999999   999999999998

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.87  E-value=2.5e-15  Score=183.29  Aligned_cols=73  Identities=16%  Similarity=0.294  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828          506 EAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR  578 (629)
Q Consensus       506 ~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~  578 (629)
                      .+...+..++.+|..||||   ||++|+.+.+||+||..+++| ..|+..|. +|.+++..+..+|..+|+.|+.+|+
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d~~~~~~f~~~f~~In~~F~ 1023 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFS 1023 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778889999999999999   999999999999999999999 99999999 9999999999999999999999999

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.84  E-value=3.1e-14  Score=175.10  Aligned_cols=75  Identities=8%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828          504 LLEAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR  578 (629)
Q Consensus       504 l~~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~  578 (629)
                      +..+..++..+..+|..+|||   |+++|+.+.+||+|+..|++| ..++..|. +|..++..+...|..+|..|+.+|+
T Consensus       953 ~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~~~~~~~f~~~f~~~~~~f~ 1032 (1164)
T TIGR02169       953 LEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFMEAFEAINENFN 1032 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888999999999998   999999999999999999999 99999999 9999999999999999999999998

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=99.80  E-value=2.9e-15  Score=184.14  Aligned_cols=345  Identities=19%  Similarity=0.243  Sum_probs=214.0

Q ss_pred             hHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006828          136 RENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKK  215 (629)
Q Consensus       136 Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~  215 (629)
                      +++++..+..++..+...+..+...+..+......+...+..+...+..+...+..+...+..+...+..+..++..+..
T Consensus       668 ~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  747 (1179)
T TIGR02168       668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE  747 (1179)
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778788888887777777777777777777777777777777766666666666666666666666666666666


Q ss_pred             HHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 006828          216 EKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEK  295 (629)
Q Consensus       216 E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~  295 (629)
                      ++..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...+..+...  
T Consensus       748 e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~--  825 (1179)
T TIGR02168       748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRER--  825 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            666665555555555555555555555555555555555554555555555555555555555555554444444444  


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 006828          296 VLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIE  375 (629)
Q Consensus       296 ~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~  375 (629)
                           +..+..++..+..++..+..++..+...       +..+...+..+...+..+...+..+...+..+......+.
T Consensus       826 -----~~~l~~~~~~l~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~  893 (1179)
T TIGR02168       826 -----LESLERRIAATERRLEDLEEQIEELSED-------IESLAAEIEELEELIEELESELEALLNERASLEEALALLR  893 (1179)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 4444444444444444443333333333       4444444444444455555555555555555555556666


Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-hhhhccccHH-HHHHHHHHHH
Q 006828          376 ERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELAD-YKSALDQATL-ERDNAWKDLD-EQRKSGMDLR  452 (629)
Q Consensus       376 e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~-y~~~le~a~~-~~~~~~~~l~-~~k~~i~~Lk  452 (629)
                      ..+..+...+..+...+..+...+..++..+..+...+.++..++.. +. ++..... .... ..... .+...+..|+
T Consensus       894 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l~~~l~e~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~  971 (1179)
T TIGR02168       894 SELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQE-RLSEEYSLTLEE-AEALENKIEDDEEEAR  971 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCHHH-HHhhccccccCHHHHH
Confidence            66666666666666666666667777777777777777777776663 33 3322110 0000 00000 0345678999


Q ss_pred             HHHHHhhhchHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          453 LKLSEMEKRFEEKVEELAKTR----NERETLVDLRKKMESHIGLLAEEKELM  500 (629)
Q Consensus       453 ~eI~~LG~vN~~AIeEyeevk----eRyefL~~Q~~DLe~~~~~L~~e~~~l  500 (629)
                      ..|..|||    ||++|+.++    +||+||..|++||...+..|..-+..+
T Consensus       972 ~~i~~lg~----aiee~~~~~~~a~er~~~l~~q~~dL~~~~~~L~~~i~~i 1019 (1179)
T TIGR02168       972 RRLKRLEN----KIKELGPVNLAAIEEYEELKERYDFLTAQKEDLTEAKETL 1019 (1179)
T ss_pred             HHHHHHHH----HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999    999999999    999999999999999999999954433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=99.77  E-value=3.9e-14  Score=172.85  Aligned_cols=59  Identities=19%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828          443 EQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQ  501 (629)
Q Consensus       443 ~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~  501 (629)
                      .+...+..++..|..|||||+.||++|+++.+||+||..++.||...+..|..-+..+.
T Consensus       946 ~~~~~i~~le~~i~~lg~VN~~Aiee~e~~~~r~~~l~~~~~dl~~a~~~l~~~i~~~d 1004 (1163)
T COG1196         946 ELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLLEVIEELD 1004 (1163)
T ss_pred             HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999999999999998666553

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=99.74  E-value=1.6e-13  Score=168.76  Aligned_cols=165  Identities=16%  Similarity=0.205  Sum_probs=105.6

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ  415 (629)
Q Consensus       336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~  415 (629)
                      +..+...+..+...+..+...+..+...+..+......+...+..+..++..+...+..+...+..+...+..+...+..
T Consensus       849 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~  928 (1164)
T TIGR02169       849 IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEA  928 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444444444444444444555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          416 LVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAE  495 (629)
Q Consensus       416 l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~  495 (629)
                      +...+..|...+.... .......++..+...+..+..+|..+||||+.|+++|+.+.++|+|+..|++||...+..+..
T Consensus       929 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~~i~~l~~vN~~Ai~~~~~~~~~~~~l~~q~~dl~~~~~~l~~ 1007 (1164)
T TIGR02169       929 LEEELSEIEDPKGEDE-EIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILE 1007 (1164)
T ss_pred             HHHHHHHhhhhhhhhh-hcccccCCHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555444432221 111102356789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 006828          496 EKELMQ  501 (629)
Q Consensus       496 e~~~l~  501 (629)
                      -+..+.
T Consensus      1008 ~i~~l~ 1013 (1164)
T TIGR02169      1008 RIEEYE 1013 (1164)
T ss_pred             HHHHHH
Confidence            777664

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.74  E-value=1.7e-11  Score=150.05  Aligned_cols=84  Identities=19%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             HHhhhhhccchhhhhhhh------------hhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHH
Q 006828           94 LAELSGESDQKVSLEIEK------------GLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERL  161 (629)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l  161 (629)
                      +.+|..-.....++.+++            |||++|.+.+|++.+..-|+.+.....++..|+.++.........++...
T Consensus       789 r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~  868 (1930)
T KOG0161|consen  789 RKEFKKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKL  868 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555566666663            99999999999999999999999999999999999998888888777777


Q ss_pred             HHHHHHHHHhhhhhHH
Q 006828          162 SQACREKDLMKGELDC  177 (629)
Q Consensus       162 ~~L~~~~~~l~~~l~~  177 (629)
                      .++..+...+...+..
T Consensus       869 ~~~~~e~~~l~~~l~~  884 (1930)
T KOG0161|consen  869 VKLLEEKNDLQEQLQA  884 (1930)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7776666655554433

>PRK02224 chromosome segregation protein; Provisional

Probab=99.69  E-value=2.1e-10  Score=137.49  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhh-H---hhhhHhH-HHHhhh
Q 006828          485 KMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSEND-I---DGQQELV-VDEKKL  559 (629)
Q Consensus       485 DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D-~---~ak~~l~-~i~~~~  559 (629)
                      .|...+..+...+..+...+..+...+..+...|..+- .+++.|..+.++++++.....+ .   .+...|. ++....
T Consensus       650 ~l~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~i~~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~  728 (880)
T PRK02224        650 EAREDKERAEEYLEQVEEKLDELREERDDLQAEIGAVE-NELEELEELRERREALENRVEALEALYDEAEELESMYGDLR  728 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444444444444444444444444443211 1566677777777777777666 3   2344566 777777


Q ss_pred             hhHHHHHHHHHHH
Q 006828          560 QGETDQYAAEFQA  572 (629)
Q Consensus       560 ~~m~~~f~~~f~~  572 (629)
                      ..|..+|...|..
T Consensus       729 ~~~~~~~~~~~~~  741 (880)
T PRK02224        729 AELRQRNVETLER  741 (880)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666555543

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=99.66  E-value=2.9e-11  Score=137.21  Aligned_cols=74  Identities=8%  Similarity=0.159  Sum_probs=67.9

Q ss_pred             HhhhHHHHHHHHHHHHHHHHhhccc---hHH-HHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHH
Q 006828          500 MQKNLLEAKRNADDLRAKMESIGFN---SDR-ALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAI  573 (629)
Q Consensus       500 l~~~l~~~~k~i~~Lk~~I~~lg~v---aie-e~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i  573 (629)
                      ....+..+..++..+...|.. |||   ||+ +|..+.+||+||..|.+| +.+...++ +|..     ..+|..+|..|
T Consensus       446 y~~~~~~~~~~i~~l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy-----~nRfr~~~~~V  519 (569)
T PRK04778        446 YLEMFFEVSDEIEALAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQY-----ANRYRSDNEEV  519 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccCCCCHHH
Confidence            344556788888999999999 999   999 999999999999999999 99999999 9999     89999999999


Q ss_pred             HHHccc
Q 006828          574 VNAFRN  579 (629)
Q Consensus       574 ~~~F~~  579 (629)
                      +.+|..
T Consensus       520 ~~~f~~  525 (569)
T PRK04778        520 AEALNE  525 (569)
T ss_pred             HHHHHH
Confidence            999983

>PRK02224 chromosome segregation protein; Provisional

Probab=99.66  E-value=1.1e-09  Score=131.22  Aligned_cols=42  Identities=5%  Similarity=0.041  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhhh
Q 006828          504 LLEAKRNADDLRAKMESIGFN-SDRALSMLKNTAAMVCQSEND  545 (629)
Q Consensus       504 l~~~~k~i~~Lk~~I~~lg~v-aiee~~~~ker~~fl~~q~~D  545 (629)
                      ...+..++..++..|..+... ..+.|+.+..+|+=+......
T Consensus       622 ~~~~~~~l~~~r~~i~~l~~~~~~~~~e~l~~~~~~~~~~~~~  664 (880)
T PRK02224        622 NDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQ  664 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            345666667777777777543 444555555555444444443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=99.58  E-value=2.5e-08  Score=122.88  Aligned_cols=65  Identities=20%  Similarity=0.247  Sum_probs=46.4

Q ss_pred             CCcHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhh
Q 006828           42 EDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVS  106 (629)
Q Consensus        42 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~  106 (629)
                      .+...++....-.|..|=++..+..+.|..|...-+.+|..+...-.|+..+..++.-+.+.-.+
T Consensus       911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~  975 (1930)
T KOG0161|consen  911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS  975 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555666667777777777778888888877777777777777777777777766665555

>PRK03918 chromosome segregation protein; Provisional

Probab=99.58  E-value=5e-08  Score=117.14  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=75.9

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006828          440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETL-------------VDLRKKMESHIGLLAEEKELMQKNLLE  506 (629)
Q Consensus       440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL-------------~~Q~~DLe~~~~~L~~e~~~l~~~l~~  506 (629)
                      .+..+..++..+..+|..|++.      +|..+..++..|             ..+...+...+..+..++..+...+..
T Consensus       564 ~~~~~~~~~~~~~~~l~~L~~~------~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~i~~  637 (880)
T PRK03918        564 KLDELEEELAELLKELEELGFE------SVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAE  637 (880)
T ss_pred             HHHHHHHHHHHHHHHHhhhccc------hHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666777777777777762      333444444433             344555666777778888888888889


Q ss_pred             HHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhh
Q 006828          507 AKRNADDLRAKMESIGFN-SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKL  559 (629)
Q Consensus       507 ~~k~i~~Lk~~I~~lg~v-aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~  559 (629)
                      +..++..++.++..||.. ..+.|..+..+++-+...... ......+. -+..+.
T Consensus       638 l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~  693 (880)
T PRK03918        638 TEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIK  693 (880)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999844 566777777777776666665 44444444 444333

>PRK03918 chromosome segregation protein; Provisional

Probab=99.51  E-value=1.3e-07  Score=113.49  Aligned_cols=40  Identities=25%  Similarity=0.256  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006828          475 ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDL  514 (629)
Q Consensus       475 RyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~L  514 (629)
                      +|+.+...+..+..++..+..++..+...+..+...+..+
T Consensus       660 ~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~  699 (880)
T PRK03918        660 EYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL  699 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333

>PRK04778 septation ring formation regulator EzrA; Provisional

Probab=99.49  E-value=1.5e-08  Score=115.26  Aligned_cols=118  Identities=16%  Similarity=0.138  Sum_probs=77.7

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---------ccccHHHHHHHHHH
Q 006828          380 CQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDN---------AWKDLDEQRKSGMD  450 (629)
Q Consensus       380 ~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~---------~~~~l~~~k~~i~~  450 (629)
                      .+...+..+...+..+......+...+..+..........+..|...+.........         +...+..+...+..
T Consensus       380 el~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~~~~~~~~~i~~  459 (569)
T PRK04778        380 ELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLEMFFEVSDEIEA  459 (569)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444444444444444444444444444211111         11236788999999


Q ss_pred             HHHHHHHhhhchHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          451 LRLKLSEMEKRFEEKVE-ELAKTRNERETLVDLRKKMESHIGLLAEEKE  498 (629)
Q Consensus       451 Lk~eI~~LG~vN~~AIe-EyeevkeRyefL~~Q~~DLe~~~~~L~~e~~  498 (629)
                      |...|.. ||||+.||+ +|..+.+||+||..|..||......++.=|.
T Consensus       460 l~~~L~~-g~VNm~ai~~e~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iq  507 (569)
T PRK04778        460 LAEELEE-KPINMEAVNRLLEEATEDVETLEEETEELVENATLTEQLIQ  507 (569)
T ss_pred             HHHHhcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999 999999999 9999999999999999999999999887443

>TIGR00606 rad50 rad50

Probab=99.49  E-value=3.2e-07  Score=114.10  Aligned_cols=146  Identities=10%  Similarity=0.135  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHhhccchH-HHHHHHHHHHHHHhhh
Q 006828          466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELM--QKNLLEAKRNADDLRAKMESIGFNSD-RALSMLKNTAAMVCQS  542 (629)
Q Consensus       466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l--~~~l~~~~k~i~~Lk~~I~~lg~vai-ee~~~~ker~~fl~~q  542 (629)
                      -.++..+...+..+.....++......+...+..+  ...+..+...+..|..++..++-... .++..+.+.++-+..+
T Consensus       990 e~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~ 1069 (1311)
T TIGR00606       990 EKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRN 1069 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444445555555555555544  44455555556666666665554433 3888888888888887


Q ss_pred             hhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc-------chhHhHHHHHHHHHHHhhhH-Hhhc-c--------
Q 006828          543 END-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR-------NREKLVEDMKHRVELMQNSV-EAQK-K--------  603 (629)
Q Consensus       543 ~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~-------~~~~~~~~~~~~~~~~~~~~-~~~~-~--------  603 (629)
                      ..- ..-+..|. -|..+..+...   ..|..+...|.       ..+-+++|+.+=.--|..|+ .-|- |        
T Consensus      1070 ~a~l~g~~k~le~qi~~l~~eL~e---~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~n~~~ 1146 (1311)
T TIGR00606      1070 HVLALGRQKGYEKEIKHFKKELRE---PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAIMKFHSMKMEEINKII 1146 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776 66666777 67766666633   34444444444       67788999999999999999 7776 2        


Q ss_pred             cchhhhHhhHH
Q 006828          604 KSFWTVVSSAT  614 (629)
Q Consensus       604 ~~~~~~~~~~~  614 (629)
                      +.+|.-+++.|
T Consensus      1147 ~~~w~~~~~~~ 1157 (1311)
T TIGR00606      1147 RDLWRSTYRGQ 1157 (1311)
T ss_pred             HHHHHHHcCcc
Confidence            78998886544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.46  E-value=3.1e-07  Score=105.89  Aligned_cols=44  Identities=16%  Similarity=0.217  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc
Q 006828          481 DLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN  524 (629)
Q Consensus       481 ~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v  524 (629)
                      .+.+.+...+..++..++.++.++....-.+..++.....|-+.
T Consensus       465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~  508 (775)
T PF10174_consen  465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASS  508 (775)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhc
Confidence            33444445555555555555555555555555555555555554

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>TIGR00606 rad50 rad50

Probab=99.40  E-value=8.9e-07  Score=110.18  Aligned_cols=52  Identities=10%  Similarity=0.123  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          445 RKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE  498 (629)
Q Consensus       445 k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~  498 (629)
                      ...+..++.+|..|..-+...  .+..+...+..+..+...|.....++.+++.
T Consensus      1027 ~~~l~el~~eI~~l~~~~~~~--~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k 1078 (1311)
T TIGR00606      1027 ENELKEVEEELKQHLKEMGQM--QVLQMKQEHQKLEENIDLIKRNHVLALGRQK 1078 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555444332  3344444444444444444444444444333

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=99.38  E-value=2.5e-06  Score=102.68  Aligned_cols=46  Identities=7%  Similarity=0.097  Sum_probs=22.1

Q ss_pred             HhhhHHHHHHHHHHHHHHHHhhccc------hHHHHHHHHHHHHHHhhhhhh
Q 006828          500 MQKNLLEAKRNADDLRAKMESIGFN------SDRALSMLKNTAAMVCQSEND  545 (629)
Q Consensus       500 l~~~l~~~~k~i~~Lk~~I~~lg~v------aiee~~~~ker~~fl~~q~~D  545 (629)
                      ....+..+...+..++..|..+...      ..+.|..+...+.=+....+.
T Consensus       641 ~~~~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  692 (895)
T PRK01156        641 NKILIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDD  692 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555442      333444444444444444443

>PRK01156 chromosome segregation protein; Provisional

Probab=99.37  E-value=5.8e-06  Score=99.56  Aligned_cols=81  Identities=11%  Similarity=0.197  Sum_probs=44.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhch---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006828          440 DLDEQRKSGMDLRLKLSEMEKRF---EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRA  516 (629)
Q Consensus       440 ~l~~~k~~i~~Lk~eI~~LG~vN---~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~  516 (629)
                      .+..+...+..++..|..+....   ....+.|..+..+|..+..+...|...+..+.+.+..+...+..+..++..+..
T Consensus       644 ~i~~~~~~i~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~  723 (895)
T PRK01156        644 LIEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINE  723 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            34555555666666665553322   233455555566666666666666666666666666555555555555555555


Q ss_pred             HHHh
Q 006828          517 KMES  520 (629)
Q Consensus       517 ~I~~  520 (629)
                      .+..
T Consensus       724 ~~~~  727 (895)
T PRK01156        724 TLES  727 (895)
T ss_pred             HHHH
Confidence            4443

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.35  E-value=7.1e-06  Score=100.15  Aligned_cols=84  Identities=15%  Similarity=0.216  Sum_probs=68.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 006828          438 WKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAK  517 (629)
Q Consensus       438 ~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~  517 (629)
                      ...++.+...+.....++....|+.-.+-.+|+.+...+.++..++++....+..++.++..+...+....+.+..+...
T Consensus       404 ~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~  483 (1822)
T KOG4674|consen  404 KLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQ  483 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677788888888999999999999999999999999999999999988888888888888877777666666555555


Q ss_pred             HHhh
Q 006828          518 MESI  521 (629)
Q Consensus       518 I~~l  521 (629)
                      +..|
T Consensus       484 ~sdl  487 (1822)
T KOG4674|consen  484 ISDL  487 (1822)
T ss_pred             HHHH
Confidence            5544

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.34  E-value=4.6e-06  Score=94.85  Aligned_cols=74  Identities=5%  Similarity=0.065  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828          505 LEAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR  578 (629)
Q Consensus       505 ~~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~  578 (629)
                      .++-+++.....++..+++|   |++.|....++-+=|..-..+ -.+++++. +|..++..=-.--.-+|..|+++|.
T Consensus       952 ~el~kkL~~~neelk~ys~VNKkAldQf~nfseQre~L~~R~eELd~s~~sI~eLi~vLdqrK~eai~~TFkqV~knFs 1030 (1200)
T KOG0964|consen  952 KELMKKLHRCNEELKGYSNVNKKALDQFVNFSEQRESLKKRQEELDRSKDSILELITVLDQRKYEAIDLTFKQVKKNFS 1030 (1200)
T ss_pred             HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            44555555566666666666   889998888888888777788 88888998 9999888777777889999999998

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=99.32  E-value=3.7e-06  Score=102.60  Aligned_cols=458  Identities=16%  Similarity=0.155  Sum_probs=218.0

Q ss_pred             chhhhhhhhHHHHHHHHHHHHhHHHh----HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          128 GLDEEKNERENEIIALKSEVSGLMGN----IENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEI  203 (629)
Q Consensus       128 ~vd~~~~~Rk~Ei~~L~eela~l~~~----~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~  203 (629)
                      +|++-+...-.++..++.+.....-.    +.....++..+......+..+...++.+++.+...+..+......+...+
T Consensus        24 d~~~~l~~k~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~  103 (1822)
T KOG4674|consen   24 DVFKKLPKKSKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEI  103 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            33344444445555555443322221    22223333333333333333444444444444444444444444444444


Q ss_pred             HHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHH
Q 006828          204 LVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKL  283 (629)
Q Consensus       204 ~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l  283 (629)
                      ..+......+......+..+.+.+...+.....+++.+...+..+..++......+.+++.........-..++.++..+
T Consensus       104 ~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl  183 (1822)
T KOG4674|consen  104 DALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERL  183 (1822)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444333444444444444455555555555555555555555555555555544444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006828          284 NEIVLALQKEEKVLCGKILELENSCSEAMDE----KLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDD  359 (629)
Q Consensus       284 ~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~----~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~  359 (629)
                      ..+..-+.....-+..++......+..+...    ...+...+..+..........+..+......+...+..+...+..
T Consensus       184 ~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~  263 (1822)
T KOG4674|consen  184 EQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSK  263 (1822)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444322222222222222222222    222222222222222222222222222222222222222222222


Q ss_pred             HHHH----HHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006828          360 KEGE----IAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERD  435 (629)
Q Consensus       360 l~~~----leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~  435 (629)
                      +...    ..++..+...-.....-+......+...+.++...+..+..-+......+......+.....++......+ 
T Consensus       264 ~k~t~~s~~~kf~~El~~q~kL~eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~-  342 (1822)
T KOG4674|consen  264 LKDTAESSEEKFEKELSTQKKLNELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKL-  342 (1822)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-
Confidence            2211    11222222222222333334444444444444444444444444444444443333332232222221111 


Q ss_pred             hccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006828          436 NAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLR  515 (629)
Q Consensus       436 ~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk  515 (629)
                        ...+..+...+..-......-|..++  +.+...+-..+-+...+..++...+..++.++....-.+..+...+....
T Consensus       343 --~k~~~~le~~l~~an~~~~~~~~~~~--~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~  418 (1822)
T KOG4674|consen  343 --EKKVSRLEGELEDANDSLSATGESSM--VSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFK  418 (1822)
T ss_pred             --HHHHHHHHHHHHhhhhhHHhhcccch--hhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01122222333333333333333333  33335666788888899999999999999999999999999999999999


Q ss_pred             HHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHH
Q 006828          516 AKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHR  590 (629)
Q Consensus       516 ~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~  590 (629)
                      .++....|+   +-.+|+.+...+.|+...+++ ..-...++ .+..+.        ..|......-.--..-+.|+.+|
T Consensus       419 eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~~~~q~~~~~e~~~~~l~--------~~~~~~~renk~l~~~~sdlsrq  490 (1822)
T KOG4674|consen  419 EEVKQKAPILKEQRSELERMQETKAELSEELDFSNQKIQKLEKELESLK--------KQLNDLERENKLLEQQISDLSRQ  490 (1822)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998   888999999999999999886 55555444 333333        22222222222345566777777


Q ss_pred             HHHHhhhH
Q 006828          591 VELMQNSV  598 (629)
Q Consensus       591 ~~~~~~~~  598 (629)
                      +--|-...
T Consensus       491 v~~Ll~el  498 (1822)
T KOG4674|consen  491 VNVLLLEL  498 (1822)
T ss_pred             HHHHHHHH
Confidence            76666665

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.31  E-value=8.5e-06  Score=94.19  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=45.2

Q ss_pred             CCcHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhh
Q 006828           42 EDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAEL   97 (629)
Q Consensus        42 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~   97 (629)
                      +-....|..|.+.+..+..|...-|.-++.++.-=+.+-..|..+..++.-|...|
T Consensus       110 d~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L  165 (775)
T PF10174_consen  110 DKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADEEIEKLQEML  165 (775)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33577899999999999999999888888888776677777777777777777776

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=99.31  E-value=6.6e-06  Score=92.59  Aligned_cols=204  Identities=19%  Similarity=0.173  Sum_probs=119.5

Q ss_pred             hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhh
Q 006828          380 CQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEME  459 (629)
Q Consensus       380 ~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG  459 (629)
                      .+...+..|+.++...+..+..++.........+..+...+......+..+...-......+..+...+..+..+.....
T Consensus       306 ~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak  385 (522)
T PF05701_consen  306 SLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAK  385 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333333444444444444444444444322212212345666777777777777777


Q ss_pred             hchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh--------ccc--hHHHH
Q 006828          460 KRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI--------GFN--SDRAL  529 (629)
Q Consensus       460 ~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l--------g~v--aiee~  529 (629)
                      ..-..+-.+...++..++.........+.++.....+++.....-..+-..++.|...-...        |.|  +.++|
T Consensus       386 ~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~ik~l~e~~~~~~~~~~~~~~~Vtls~eEy  465 (522)
T PF05701_consen  386 KEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEIKALSESESSSRASDSESSSKVTLSLEEY  465 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccCCCCCeeecHHHH
Confidence            77777777777788888888888888888888888877777666666666666554433222        234  99999


Q ss_pred             HHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH-Hh
Q 006828          530 SMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV-EA  600 (629)
Q Consensus       530 ~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~-~~  600 (629)
                      ..|+.|+.-....     |...+. .+..++            +++..=..--..++.+.++++.++.+. +|
T Consensus       466 ~~L~~ka~e~ee~-----a~kkva~A~aqve------------~ak~se~e~l~kle~~~~e~~~~k~al~~A  521 (522)
T PF05701_consen  466 ESLSKKAEEAEEL-----AEKKVAAAMAQVE------------AAKASEKEILEKLEEAMKEIEERKEALEEA  521 (522)
T ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999998766555     333333 333333            344443444556777788888888777 65

Several sequences in this family are described as being myosin heavy chain-like.

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=99.10  E-value=4e-05  Score=87.69  Aligned_cols=154  Identities=16%  Similarity=0.229  Sum_probs=108.4

Q ss_pred             HHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Q 006828          366 KLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQR  445 (629)
Q Consensus       366 el~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k  445 (629)
                      ++..+...|......++..+..+.....++.+.-..+..+...+..+..+....+..+...-..    .+..-...+...
T Consensus       405 eleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~----~~q~ls~~~Q~~  480 (1195)
T KOG4643|consen  405 ELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEE----LDQLLSLQDQLE  480 (1195)
T ss_pred             HHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHH----HHHHHHHHHHHH
Confidence            3334444455555555555555555555555555555555555555555555544443221111    111122456777


Q ss_pred             HHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828          446 KSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF  523 (629)
Q Consensus       446 ~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~  523 (629)
                      .....++..|+.+|....+++.++.+.-.+++|+..|+.....++.-+......+...+..+.++-..|-.+|..|..
T Consensus       481 ~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~  558 (1195)
T KOG4643|consen  481 AETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKT  558 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            788888899999999999999999999999999999999999999999888888888888888888888888888876

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.07  E-value=1.7e-05  Score=90.84  Aligned_cols=184  Identities=14%  Similarity=0.131  Sum_probs=104.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ  415 (629)
Q Consensus       336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~  415 (629)
                      +..+..++..+...+.........+...+.........+..++..+-.....+..+.......+..+..++.++..+-..
T Consensus       845 ~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~  924 (1174)
T KOG0933|consen  845 ISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKAN  924 (1174)
T ss_pred             HHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHH
Confidence            33333333333333333333333344444444444444444444444444444444444444555555555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHhh----------hhccccHHHHHHHHHHHHHHHHHhh-hchHHhHHHHHHHHHHHHHHHHHHH
Q 006828          416 LVNELADYKSALDQATLER----------DNAWKDLDEQRKSGMDLRLKLSEME-KRFEEKVEELAKTRNERETLVDLRK  484 (629)
Q Consensus       416 l~~~l~~y~~~le~a~~~~----------~~~~~~l~~~k~~i~~Lk~eI~~LG-~vN~~AIeEyeevkeRyefL~~Q~~  484 (629)
                      +...+..+...++.+..+.          +=-..+....+.++..|+..+..|+ .||+.++.=++.+..+|..+...++
T Consensus       925 ~~k~v~~l~~k~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k~~ 1004 (1174)
T KOG0933|consen  925 ARKEVEKLLKKHEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTKKE 1004 (1174)
T ss_pred             HHHHHHHHHHhccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444332110          0001246678899999999999887 5889888888888777776655554


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHH
Q 006828          485 KMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGET  563 (629)
Q Consensus       485 DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~  563 (629)
                      -++.-                                                           +..+. +|..+|+.-.
T Consensus      1005 ~Ie~D-----------------------------------------------------------k~kI~ktI~~lDe~k~ 1025 (1174)
T KOG0933|consen 1005 IIEKD-----------------------------------------------------------KSKIKKTIEKLDEKKR 1025 (1174)
T ss_pred             HHHhh-----------------------------------------------------------HHHHHHHHHHHHHHHH
Confidence            44433                                                           33344 7888888888


Q ss_pred             HHHHHHHHHHHHHcc
Q 006828          564 DQYAAEFQAIVNAFR  578 (629)
Q Consensus       564 ~~f~~~f~~i~~~F~  578 (629)
                      +....+|..||..|+
T Consensus      1026 ~~L~kaw~~VN~dFG 1040 (1174)
T KOG0933|consen 1026 EELNKAWEKVNKDFG 1040 (1174)
T ss_pred             HHHHHHHHHHhhhHH
Confidence            888899999999998

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=0.00013  Score=85.13  Aligned_cols=69  Identities=12%  Similarity=0.029  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc
Q 006828          510 NADDLRAKMESIGFN---SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR  578 (629)
Q Consensus       510 ~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~  578 (629)
                      .+..|...++.+|.|   +|.+|.+--.-|.=--.-.++ ..-.+... ...++.+.=-..|...|..|.....
T Consensus      1079 ~i~~lE~~~~~l~~vd~~~i~eY~~k~~~y~~rv~~l~~~t~kr~~~re~l~~Lrk~RldEFm~gf~~Is~kLk 1152 (1293)
T KOG0996|consen 1079 KIALLEKRVEELREVDLGVIAEYAKKVELYLKRVAELEKFTQKRDEHREKLEELRKRRLDEFMAGFNIISMKLK 1152 (1293)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777888888766   777887655444222222222 33333333 4455554445678888888876654

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.03  E-value=0.00016  Score=84.34  Aligned_cols=98  Identities=19%  Similarity=0.257  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHhhhHHH
Q 006828          444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKK-----------------MESHIGLLAEEKELMQKNLLE  506 (629)
Q Consensus       444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~D-----------------Le~~~~~L~~e~~~l~~~l~~  506 (629)
                      ....+..++..+..|.........++..+..+.+.|..|...                 +.++++.++.+++.+++.-..
T Consensus       804 ~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K  883 (1293)
T KOG0996|consen  804 LEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKRLKELEEQIEELKKEVEELQEKAAK  883 (1293)
T ss_pred             HHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            345556666666666666666666666666666666666544                 444456666666666533222


Q ss_pred             HHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhhh
Q 006828          507 AKRNADDLRAKMESIGFN----SDRALSMLKNTAAMVCQS  542 (629)
Q Consensus       507 ~~k~i~~Lk~~I~~lg~v----aiee~~~~ker~~fl~~q  542 (629)
                       +.+++.|+..|..+|++    --...+.+.++.+++..-
T Consensus       884 -k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~  922 (1293)
T KOG0996|consen  884 -KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEAD  922 (1293)
T ss_pred             -HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHH
Confidence             58899999999999997    334778888888888543

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=99.02  E-value=4.4e-11  Score=141.06  Aligned_cols=486  Identities=19%  Similarity=0.240  Sum_probs=0.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhh-hhhHHHHHhhHhHhhhcchh---hhhhhhHH
Q 006828           63 HEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIE-KGLFCVFLMTQMKEMGEGLD---EEKNEREN  138 (629)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vd---~~~~~Rk~  138 (629)
                      .+-..||+.++.+++.|+..=...-.|+++|...+..+....+.++-. +     .+++++.+.+..+|   ..++.-..
T Consensus       134 ~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K-----~lE~qL~El~~klee~er~~~el~~  208 (859)
T PF01576_consen  134 AELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRK-----QLEAQLNELQAKLEESERQRNELTE  208 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHh-----hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999888888765 4     44555555555555   34444445


Q ss_pred             HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006828          139 EIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKN  218 (629)
Q Consensus       139 Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~  218 (629)
                      ....|..++.++...+......+..+......+...+..+...+..-......+...+..++..+..+...++.-.....
T Consensus       209 ~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~  288 (859)
T PF01576_consen  209 QKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKS  288 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence            55566666666666666666666666665555555555555555444444444444444444444444443333222222


Q ss_pred             hHHHhHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHH
Q 006828          219 ERDGDIEAFKKEKGLL----------------------GKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDEL  276 (629)
Q Consensus       219 ~l~~~i~~l~~~~~~l----------------------~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~el  276 (629)
                      .+...+..+..++..+                      ...+..+...++.....+..+......+..+++.+...+...
T Consensus       289 ~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~  368 (859)
T PF01576_consen  289 ELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKA  368 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222222222222221                      112222222222222222222222222222222222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006828          277 EKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVV  356 (629)
Q Consensus       277 e~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~e  356 (629)
                      ....+.+......+...+......+..+...+..+......+..++-.+...       +..+...+..+......+..+
T Consensus       369 ~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~-------lee~~e~~e~lere~k~L~~E  441 (859)
T PF01576_consen  369 QAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNE-------LEELQEQLEELERENKQLQDE  441 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHh
Confidence            2222222222222222211111222222222222222222222222222222       222222222333333333333


Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHHH-
Q 006828          357 LDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA-DYKS---ALDQAT-  431 (629)
Q Consensus       357 l~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~-~y~~---~le~a~-  431 (629)
                      +.++...+...-.....|......++.++.+++..+.++...+...+..+-++...+..+...+. .+..   .++..+ 
T Consensus       442 l~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr  521 (859)
T PF01576_consen  442 LEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRR  521 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            33333333333334444555555555666666666666666665555555555555555555443 2221   111111 


Q ss_pred             ---HhhhhccccH-------HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828          432 ---LERDNAWKDL-------DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQ  501 (629)
Q Consensus       432 ---~~~~~~~~~l-------~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~  501 (629)
                         ..+..+...+       ..+-...+.|...|.+|..-...+...-......+..+..+..||...+.......+.+.
T Consensus       522 ~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~  601 (859)
T PF01576_consen  522 NHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELR  601 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence               0111111111       112233344444555554322222222233333344455666666666665555555666


Q ss_pred             hhHHHHHHHHHHHHHHHHhhccc----------hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhh
Q 006828          502 KNLLEAKRNADDLRAKMESIGFN----------SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQ  560 (629)
Q Consensus       502 ~~l~~~~k~i~~Lk~~I~~lg~v----------aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~  560 (629)
                      ..+..+.+++..|..++..+..-          |..+...+.+|++-++.+... ...+..|. -|..+..
T Consensus       602 ~~~~~~e~r~~~l~~elee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~  672 (859)
T PF01576_consen  602 EQLAVSERRLRALQAELEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEE  672 (859)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            66667777777777777777763          566889999999999988888 77777776 5555543

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.01  E-value=0.00015  Score=82.87  Aligned_cols=192  Identities=24%  Similarity=0.248  Sum_probs=90.2

Q ss_pred             HhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhH
Q 006828           58 LVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERE  137 (629)
Q Consensus        58 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk  137 (629)
                      +++||...+.+|..|-.-   ++..|+.--.|+.+|. .|-..-..+.+++.--     |            |.++..-.
T Consensus       178 im~ET~qK~ekI~ell~y---ieerLreLEeEKeeL~-~Yqkldk~rr~lEYti-----Y------------drEl~E~~  236 (1200)
T KOG0964|consen  178 IMEETKQKREKINELLKY---IEERLRELEEEKEELE-KYQKLDKERRSLEYTI-----Y------------DRELNEIN  236 (1200)
T ss_pred             HHHHHhhhHHHHHHHHHH---HHHHHHHHHHhHHHHH-HHHHHHHhHhhhhhhh-----h------------hhHHHHHH
Confidence            689999999999998764   6666666666666653 2333333333333221     1            22222222


Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006828          138 NEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEK  217 (629)
Q Consensus       138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~  217 (629)
                      .++..|.              ......-..-......++.......++.-.+.+++..+..+......+..+........
T Consensus       237 ~~l~~le--------------~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~k  302 (1200)
T KOG0964|consen  237 GELERLE--------------EDRSSAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKKK  302 (1200)
T ss_pred             HHHHHHH--------------HHHhccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2233332              22222222222233333333444444555555555555555555555555444444444


Q ss_pred             hhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHH
Q 006828          218 NERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLN  284 (629)
Q Consensus       218 ~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~  284 (629)
                      ..++-.+..++.++....+.-......+..+...|.....++..+...+..+..+=..+...++.++
T Consensus       303 t~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~  369 (1200)
T KOG0964|consen  303 TKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLE  369 (1200)
T ss_pred             hhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHH
Confidence            4444444444444444444444444444444444444444444444444444433333333333333

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=99.00  E-value=0.00017  Score=82.78  Aligned_cols=334  Identities=15%  Similarity=0.129  Sum_probs=164.2

Q ss_pred             hhHHHHHhhH-------hHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 006828          112 GLFCVFLMTQ-------MKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASR  184 (629)
Q Consensus       112 ~~~~~~~~~~-------~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~  184 (629)
                      .++.+|.-.+       ++.|--.|-++|+-+|.||..+-++++|-.-|-.+++....-+......+.+--..++.++.=
T Consensus       126 ~vq~lF~SVqLNvNNP~FLIMQGrITkVLNMKp~EILsMvEEAAGTrmye~kKe~A~ktiekKetKlkEi~~lL~eeI~P  205 (1174)
T KOG0933|consen  126 KVQDLFCSVQLNVNNPHFLIMQGRITKVLNMKPSEILSMVEEAAGTRMYENKKEAAEKTIEKKETKLKEINTLLREEILP  205 (1174)
T ss_pred             HHHHHHHHhcccCCCCceEEecccchhhhcCCcHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            4555564443       245666677999999999999999999999988888877777766665554444444444432


Q ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006828          185 LKDRLIEMEG---KERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNA  261 (629)
Q Consensus       185 l~~~l~ele~---~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~e  261 (629)
                      --..+.+-+.   .+..+...+.++.+-+-.++.  -........+...+.+....+..+.........+|..+..++.+
T Consensus       206 ~l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY--~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ike  283 (1174)
T KOG0933|consen  206 RLEKLREERSQYLEYQKINRDLERLSRICIAYEY--LQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKE  283 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            2222222222   222223333333333322221  11111222233333333333444444444444444444444444


Q ss_pred             HHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          262 IEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIE  341 (629)
Q Consensus       262 le~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~  341 (629)
                      +....+      .+....+..|...+.++...+-.....+.-....|.........+...+......+.....+..    
T Consensus       284 i~~~rd------~em~~~~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~----  353 (1174)
T KOG0933|consen  284 IEQQRD------AEMGGEVKALEDKLDSLQNEITREETSLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMA----  353 (1174)
T ss_pred             HHHHHH------HHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHh----
Confidence            333222      1223333444455555544433333334444444444444444444444444444333333333    


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          342 EKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA  421 (629)
Q Consensus       342 e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~  421 (629)
                         ........+.....+....++........+..-+..-+.+-..+..++...+..++.....+......+.++...+.
T Consensus       354 ---~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk  430 (1174)
T KOG0933|consen  354 ---KVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTLEDQLRDAKITLSEASTEIKQAKLKLEHLRKELK  430 (1174)
T ss_pred             ---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               33333334444444444445555544445544444444444445555555555555555555555555555555554


Q ss_pred             HHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhh
Q 006828          422 DYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEK  460 (629)
Q Consensus       422 ~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~  460 (629)
                      ........+...+......++..+..+..|+..+..||.
T Consensus       431 ~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~  469 (1174)
T KOG0933|consen  431 LREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGY  469 (1174)
T ss_pred             hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            333333333212222134567777788888888877774

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=98.95  E-value=1.2e-10  Score=137.46  Aligned_cols=553  Identities=17%  Similarity=0.221  Sum_probs=0.0

Q ss_pred             CCCcHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhh
Q 006828           41 MEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT  120 (629)
Q Consensus        41 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (629)
                      .+|.+-++.+|-...+.|-.+-.+=+.+++.-+.++..|...|...-.+++.|+..+..-.+....+...-  -  -+.+
T Consensus       224 Lee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~ql--s--k~~~  299 (859)
T PF01576_consen  224 LEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQL--S--KLNA  299 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH--H--HHhh
Confidence            45566677777777777777777777788888888888888888888888888888776555555544330  0  1122


Q ss_pred             HhHhhhcchhhhhhhhHHHH----HHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006828          121 QMKEMGEGLDEEKNERENEI----IALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE  196 (629)
Q Consensus       121 ~~~~~~~~vd~~~~~Rk~Ei----~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~  196 (629)
                      .+...+..+|.....+-.++    +.|...+.++...+.........+......+...+..+...+.........+++..
T Consensus       300 El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKq  379 (859)
T PF01576_consen  300 ELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQ  379 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23334444455444444443    34555677777777888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHH
Q 006828          197 RNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDEL  276 (629)
Q Consensus       197 ~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~el  276 (629)
                      ..+...+..+...+..+..+++.+......+...+..+...+..+...+..+......+..++.++...+......++++
T Consensus       380 r~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eL  459 (859)
T PF01576_consen  380 RKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHEL  459 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHH
Confidence            88888887777777666666555554444444444444444444444444444444444444444443333333333333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q 006828          277 EKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEI---------------KALLDQEREKQKRIERLIE  341 (629)
Q Consensus       277 e~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei---------------~~l~~e~~e~~~~l~~l~~  341 (629)
                      +.....|...+..+...+..+.+.+...+...-.+.-.+..+..++               ..+...+..++..++.-..
T Consensus       460 ek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k  539 (859)
T PF01576_consen  460 EKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERK  539 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHH
Confidence            3333333333333333322222222222222111111111111111               1111121222222221111


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          342 EKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA  421 (629)
Q Consensus       342 e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~  421 (629)
                      ....+......+...+.++...++........+...+..+...+..++..+.........+...+...+..+..+...+.
T Consensus       540 ~r~~~~r~kkKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~ele  619 (859)
T PF01576_consen  540 ERAEALREKKKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAELE  619 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11111111111222222222222222222222333333333333333333333332223232232223333333333333


Q ss_pred             HHHHHHHHHH-------Hhhhhcc-------ccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006828          422 DYKSALDQAT-------LERDNAW-------KDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKME  487 (629)
Q Consensus       422 ~y~~~le~a~-------~~~~~~~-------~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe  487 (629)
                      .+...++.+.       ....++.       ..-..+......|...|..|.........++..+.+++.....+...|.
T Consensus       620 e~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~  699 (859)
T PF01576_consen  620 ELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLA  699 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence            3333222221       1111111       1112334455667777888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhh
Q 006828          488 SHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN----SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQG  561 (629)
Q Consensus       488 ~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v----aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~  561 (629)
                      ..+..-+.-...+......+...+++|+..|..+...    +-..+..+-.|...|..+.+. ..-+.... .+..++..
T Consensus       700 ~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~~~~~~~k~~i~kLE~ri~eLE~~Le~E~r~~~~~~k~~rk~er~  779 (859)
T PF01576_consen  700 EELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQSALKGGKKQIAKLEARIRELEEELESEQRRRAEAQKQLRKLERR  779 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            8888777777777777788888999999999998886    234666777777778877777 66666666 77777766


Q ss_pred             HHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH
Q 006828          562 ETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV  598 (629)
Q Consensus       562 m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~  598 (629)
                      ++.. .-..+.=.+++..=...|+.+...+-.++..+
T Consensus       780 ~kEl-~~q~ee~~k~~~~~~d~~~kl~~k~k~~krq~  815 (859)
T PF01576_consen  780 VKEL-QFQVEEERKNAERLQDLVDKLQLKLKQLKRQL  815 (859)
T ss_dssp             -------------------------------------
T ss_pred             HHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            6554 22233334444433344444444444444444

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.93  E-value=0.00036  Score=81.48  Aligned_cols=181  Identities=20%  Similarity=0.298  Sum_probs=75.0

Q ss_pred             HHHHhhhhhhhhHHHhhhhhccchhhhh-------------hhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHH
Q 006828           81 AELSLFGVEKSELLAELSGESDQKVSLE-------------IEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEV  147 (629)
Q Consensus        81 ~~l~~~~~~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eel  147 (629)
                      ..+.....+++.|..++....+....++             -..+|.-||-..+-..-.   ...+.........|.+.+
T Consensus       228 ~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~---~~~i~~~qek~~~l~~ki  304 (1074)
T KOG0250|consen  228 ELIDLKEEEIKNLKKKIKEEEEKLDNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQ---EEEIKKKQEKVDTLQEKI  304 (1074)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555444433222             222788888444322211   122333333344444444


Q ss_pred             HhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHH
Q 006828          148 SGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAF  227 (629)
Q Consensus       148 a~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l  227 (629)
                      .............+...+..++.+....+....++......+..+......++.++......+..++...+.+...|..+
T Consensus       305 ~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~  384 (1074)
T KOG0250|consen  305 EEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADL  384 (1074)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444444444444444333


Q ss_pred             HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 006828          228 KKEK-GLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEM  264 (629)
Q Consensus       228 ~~~~-~~l~~el~el~~ei~~l~~~ie~l~~el~ele~  264 (629)
                      ..+. ..+..++.+..+.+..|+.+++.++..+..+..
T Consensus       385 ~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~  422 (1074)
T KOG0250|consen  385 EKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLRE  422 (1074)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333 223333333333333333333333333333333

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=98.92  E-value=0.00028  Score=79.59  Aligned_cols=115  Identities=16%  Similarity=0.187  Sum_probs=78.3

Q ss_pred             HHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhh
Q 006828           56 DLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNE  135 (629)
Q Consensus        56 ~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~  135 (629)
                      ..+-++..+-..|+...-..|.-+-.+|...-+-+++|...|..+....-.+.-.    .-..+-|..+|+.++..--+.
T Consensus        37 ~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~----~e~~k~r~~e~e~~~~~~~~~  112 (522)
T PF05701_consen   37 EKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQAEEKQAEED----SELAKFRAKELEQGIAEEASV  112 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHhHHHHHHHhhhhcccchH
Confidence            3456778888899999999999999999999999999999999877655443222    113444666666655532222


Q ss_pred             -hHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhh
Q 006828          136 -RENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGE  174 (629)
Q Consensus       136 -Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~  174 (629)
                       -+.++.....+.+.....+...+..|.++..+.......
T Consensus       113 ~~k~ele~~~~q~~~~~~eL~~~k~EL~~lr~e~~~~~~~  152 (522)
T PF05701_consen  113 AWKAELESAREQYASAVAELDSVKQELEKLRQELASALDA  152 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             456666666666666666666666666666666544433

Several sequences in this family are described as being myosin heavy chain-like.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.86  E-value=0.00035  Score=77.23  Aligned_cols=38  Identities=18%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828          484 KKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI  521 (629)
Q Consensus       484 ~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l  521 (629)
                      .+|.+.+.-++.|++.+.....++..-|..|..++..+
T Consensus       420 ~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~r~~~~  457 (546)
T PF07888_consen  420 QELKSSLRVAQKEKEQLQEEKQELLEYIERLEQRLDKV  457 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666666666666666666666666666555444

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.82  E-value=0.00057  Score=84.96  Aligned_cols=143  Identities=14%  Similarity=0.104  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006828          137 ENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKE  216 (629)
Q Consensus       137 k~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E  216 (629)
                      +.|++.+.+++.++...   +.+...           .+.....++.++.+.+.++..++..|+.++..+.. +..+..+
T Consensus       278 ~eERR~liEEAag~r~r---k~eA~k-----------kLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k-yleL~ee  342 (1486)
T PRK04863        278 ANERRVHLEEALELRRE---LYTSRR-----------QLAAEQYRLVEMARELAELNEAESDLEQDYQAASD-HLNLVQT  342 (1486)
T ss_pred             HHHHHHHHHHHHHHHHH---HHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            56777888888665532   222222           23333446777778888888888888888877777 5555544


Q ss_pred             HhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006828          217 KNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEE  294 (629)
Q Consensus       217 ~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~  294 (629)
                      .......+..+...+..+...+......+..+...+..+..++..++..+..++..+..+...+..++..+..+...+
T Consensus       343 ~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i  420 (1486)
T PRK04863        343 ALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAV  420 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344555555555555555555555555555555555555555555555555555555555555555555554444

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.81  E-value=0.00022  Score=80.87  Aligned_cols=318  Identities=15%  Similarity=0.180  Sum_probs=155.9

Q ss_pred             HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 006828          140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNE  219 (629)
Q Consensus       140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~  219 (629)
                      ++.|.+++..+......-+.++..|.+-.-    .+..++.=-..+-.....+...+.....++..+..--+.+..+..+
T Consensus       233 vrdLtEkLetlR~kR~EDk~Kl~Elekmki----qleqlqEfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad  308 (1243)
T KOG0971|consen  233 VRDLTEKLETLRLKRAEDKAKLKELEKMKI----QLEQLQEFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMAD  308 (1243)
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555554444444444444433222    2333333333444455555555555555555555555566666666


Q ss_pred             HHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          220 RDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCG  299 (629)
Q Consensus       220 l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~  299 (629)
                      +.+.++.+--.++-.++....|+.++..++..++++..+++-++.+.+..-..-.      +.-.=++..+......+++
T Consensus       309 ~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~------~~ss~qfkqlEqqN~rLKd  382 (1243)
T KOG0971|consen  309 TADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQ------AASSYQFKQLEQQNARLKD  382 (1243)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------ccchHHHHHHHHHHHHHHH
Confidence            6666666655555555566666666666666666666555555544433211110      0001112222222233333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH---HHHHHHHHHhhhhHHHH
Q 006828          300 KILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDD---KEGEIAKLLREKNDIEE  376 (629)
Q Consensus       300 ~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~---l~~~leel~~e~~~l~e  376 (629)
                      .+..+.+-..........+..++.....++.++....+.|..++...+..|.+++.+++.   .+.-.+.+-.....+++
T Consensus       383 alVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEe  462 (1243)
T KOG0971|consen  383 ALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEE  462 (1243)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHH
Confidence            344444433333444444444444444554454445666666666666666666665554   34445555556666666


Q ss_pred             HHHhhHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 006828          377 RKVCQDNEISGLHKEIGELRDVVFKLK-ASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKL  455 (629)
Q Consensus       377 ~~~~~e~el~~l~~el~~l~~~l~~le-~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI  455 (629)
                      .+..++.++..+..- .++.+.+.... ...-.+..+++.+...+-.+...++.+.....++...+-..+..+..|...|
T Consensus       463 kVklLeetv~dlEal-ee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdql  541 (1243)
T KOG0971|consen  463 KVKLLEETVGDLEAL-EEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQL  541 (1243)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            666666655554321 22222221111 1112344445544444434444444443333333445566666777777777


Q ss_pred             HHhhhchHHhHHH
Q 006828          456 SEMEKRFEEKVEE  468 (629)
Q Consensus       456 ~~LG~vN~~AIeE  468 (629)
                      ..+..-+..+.++
T Consensus       542 qe~~dq~~Sseee  554 (1243)
T KOG0971|consen  542 QELTDQQESSEEE  554 (1243)
T ss_pred             HHHHhhhhhhHHH
Confidence            7776666554444

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.79  E-value=0.0018  Score=80.27  Aligned_cols=46  Identities=11%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHhhccc
Q 006828          479 LVDLRKKMESHIGLLAEEKELMQKNLLEAKRNAD-DLRAKMESIGFN  524 (629)
Q Consensus       479 L~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~-~Lk~~I~~lg~v  524 (629)
                      ......++..++..+..++.........-.+.+. .+..++.+-|..
T Consensus       723 ~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD  769 (1201)
T PF12128_consen  723 WQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVD  769 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            3334455555556666666666655555444443 666666667764

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=98.79  E-value=1.2e-05  Score=81.53  Aligned_cols=54  Identities=26%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             HHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          361 EGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSK  414 (629)
Q Consensus       361 ~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~  414 (629)
                      +..+..+..............+..+..|...+..+...+......+..+..+++
T Consensus       175 e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld  228 (237)
T PF00261_consen  175 EEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELD  228 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333444444444444444444444444444433333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=98.75  E-value=0.00086  Score=74.22  Aligned_cols=21  Identities=10%  Similarity=0.034  Sum_probs=7.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 006828          301 ILELENSCSEAMDEKLEMVLE  321 (629)
Q Consensus       301 i~~le~~l~~~~~~~~~l~~e  321 (629)
                      +..++..+........-+..+
T Consensus       292 Lr~~qe~lqaSqq~~~~L~~E  312 (546)
T PF07888_consen  292 LRSAQEQLQASQQEAELLRKE  312 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.71  E-value=0.0013  Score=73.93  Aligned_cols=141  Identities=16%  Similarity=0.163  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828          444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF  523 (629)
Q Consensus       444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~  523 (629)
                      +......++.++..+.-....+---.+-..+..+.|.++++++..-+.++++-+......+..+......+.        
T Consensus       321 lh~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerq--------  392 (1265)
T KOG0976|consen  321 LHLENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQ--------  392 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence            344566777777777777777666666666777777777777776666666544433333322222222222        


Q ss_pred             chHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhh-----hHHHHHHHHHHHHHHHcc-chhHhHHHHHHHHHHHh
Q 006828          524 NSDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQ-----GETDQYAAEFQAIVNAFR-NREKLVEDMKHRVELMQ  595 (629)
Q Consensus       524 vaiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~-----~m~~~f~~~f~~i~~~F~-~~~~~~~~~~~~~~~~~  595 (629)
                         +..+.+|.+.--+.+-+.| ..||+.|. ....+|.     .|...-.+.|..++.+-. +|.++|++-..=+.+++
T Consensus       393 ---eQidelKn~if~~e~~~~dhe~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~aegsrrraIeQcnemv~rir  469 (1265)
T KOG0976|consen  393 ---EQIDELKNHIFRLEQGKKDHEAAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHAEGSRRRAIEQCNEMVDRIR  469 (1265)
T ss_pred             ---HHHHHHHHhhhhhhhccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence               2344445555555555666 66666666 5555543     233334455666655554 56666665544444443

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=98.57  E-value=0.0034  Score=71.58  Aligned_cols=84  Identities=18%  Similarity=0.324  Sum_probs=68.7

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 006828          440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKME  519 (629)
Q Consensus       440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~  519 (629)
                      .+..+......+...+..-..+.....+.+....++++....+..++...+.+|..+=...++.+..+...+..+++.|.
T Consensus       352 ~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le  431 (560)
T PF06160_consen  352 QLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE  431 (560)
T ss_pred             HHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46667777777777777777777888888888888888888888888888888888877788888888888888888888


Q ss_pred             hhcc
Q 006828          520 SIGF  523 (629)
Q Consensus       520 ~lg~  523 (629)
                      ..+=
T Consensus       432 k~nL  435 (560)
T PF06160_consen  432 KSNL  435 (560)
T ss_pred             HcCC
Confidence            7764

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=98.57  E-value=0.0045  Score=72.64  Aligned_cols=245  Identities=20%  Similarity=0.245  Sum_probs=111.2

Q ss_pred             hhHHHHHhh-HhHhhhcch---hhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 006828          112 GLFCVFLMT-QMKEMGEGL---DEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKD  187 (629)
Q Consensus       112 ~~~~~~~~~-~~~~~~~~v---d~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~  187 (629)
                      ..+++|.|+ +...++.+.   -..+..-...|..+.+.+..+.+.+...++.+..+..... +.+.+..+...+-  =.
T Consensus       198 dkYklfmkaT~L~qi~~~~~~~~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~e~-~~~~l~~Lk~k~~--W~  274 (1074)
T KOG0250|consen  198 DKYKLFMKATQLEQITESYSEIMESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQLED-LKENLEQLKAKMA--WA  274 (1074)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HH
Confidence            567888875 333444433   3556666677777777777777777777777665554443 3233322222211  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------
Q 006828          188 RLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVI------------  255 (629)
Q Consensus       188 ~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l------------  255 (629)
                      .+.....++..+...+...+.....+...++.....+..+...+.+.+.++..+..+.+.-..+++..            
T Consensus       275 ~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~  354 (1074)
T KOG0250|consen  275 WVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVN  354 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555544444444444444444444433333333333333333            


Q ss_pred             --HHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          256 --VKEKNAIEMQNSEQKVINDELEKEVNKLNEIV-LALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREK  332 (629)
Q Consensus       256 --~~el~ele~~~e~l~~el~ele~ela~l~e~l-~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~  332 (629)
                        ..++......+...+..+..++..++.++.+. ..+..++...++++..|..++..++.....+..++..+...+...
T Consensus       355 ~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~  434 (1074)
T KOG0250|consen  355 DLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEE  434 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              33333333333333333333344444443333 333333333333333444443333334444444444444433333


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006828          333 QKRIERLIEEKDEISHRLEKAVVVLDD  359 (629)
Q Consensus       333 ~~~l~~l~~e~~~le~~i~el~~el~~  359 (629)
                      +.+.......+..+...+......+.+
T Consensus       435 ~ee~~~i~~~i~~l~k~i~~~~~~l~~  461 (1074)
T KOG0250|consen  435 EEEKEHIEGEILQLRKKIENISEELKD  461 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333334444433333333

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=98.56  E-value=0.0034  Score=70.68  Aligned_cols=78  Identities=9%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          347 SHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYK  424 (629)
Q Consensus       347 e~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~  424 (629)
                      +.++..+...+-+.+...+-+...+.+|+............+++........+..+-......+.+++.+.++++.|.
T Consensus       329 trqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e  406 (1265)
T KOG0976|consen  329 TRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLE  406 (1265)
T ss_pred             HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            333333333333333334444444555555555555555666666666666666666666667777777777776554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.49  E-value=0.003  Score=66.66  Aligned_cols=32  Identities=19%  Similarity=0.066  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          469 LAKTRNERETLVDLRKKMESHIGLLAEEKELM  500 (629)
Q Consensus       469 yeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l  500 (629)
                      +..++..+......+.+|..---+|..||...
T Consensus       271 l~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatY  302 (312)
T PF00038_consen  271 LAELREEMARQLREYQELLDVKLALDAEIATY  302 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            33344444444444445555555555555443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=98.47  E-value=0.006  Score=69.68  Aligned_cols=46  Identities=20%  Similarity=0.264  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 006828          356 VLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFK  401 (629)
Q Consensus       356 el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~  401 (629)
                      +++-+..-+.++...+....+-+......|.+.+.-+..|.+.+..
T Consensus       498 Eld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe  543 (1243)
T KOG0971|consen  498 ELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQE  543 (1243)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444444444444444444444444433

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.46  E-value=0.0024  Score=70.76  Aligned_cols=44  Identities=27%  Similarity=0.156  Sum_probs=32.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006828          464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEA  507 (629)
Q Consensus       464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~  507 (629)
                      .-..++.+++++...|..++++|..--.+|..||...++-+...
T Consensus       346 ~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkLLege  389 (546)
T KOG0977|consen  346 DKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKLLEGE  389 (546)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHHhccc
Confidence            34567778888888888888888888888888877666555433

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.43  E-value=0.012  Score=71.09  Aligned_cols=27  Identities=37%  Similarity=0.346  Sum_probs=18.8

Q ss_pred             hhhHHHHHhhHhHhhhcchhhhhhhhH
Q 006828          111 KGLFCVFLMTQMKEMGEGLDEEKNERE  137 (629)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~vd~~~~~Rk  137 (629)
                      ++-|.-|+.+.|.+...-+|+++.--.
T Consensus       142 QGe~~~fl~~~~~er~~il~~l~~l~~  168 (908)
T COG0419         142 QGEFDAFLKSKPKERKEILDELFGLEK  168 (908)
T ss_pred             cHhHHHHHhcCcHHHHHHHHHHhCchh
Confidence            566777777777777776776665555

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=98.42  E-value=0.0043  Score=65.44  Aligned_cols=109  Identities=16%  Similarity=0.183  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006828          137 ENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGEL-DCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKK  215 (629)
Q Consensus       137 k~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l-~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~  215 (629)
                      +.++..|-+.++++...+..++..-..|...+..+.... .............+..++..+..+..+...+..++..+..
T Consensus         3 K~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~   82 (312)
T PF00038_consen    3 KEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE   82 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence            456777888888888877777777777777776665552 1112222233444444444444444444444444444444


Q ss_pred             HHhhHHHhHHHHHHHHHHHHHHHHhHHHHH
Q 006828          216 EKNERDGDIEAFKKEKGLLGKRLVGLEKET  245 (629)
Q Consensus       216 E~~~l~~~i~~l~~~~~~l~~el~el~~ei  245 (629)
                      ++..+...+.........++.++..+...+
T Consensus        83 e~~~~r~k~e~e~~~~~~le~el~~lrk~l  112 (312)
T PF00038_consen   83 ELEDLRRKYEEELAERKDLEEELESLRKDL  112 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            444443333333333333333333333333

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=98.40  E-value=0.018  Score=71.57  Aligned_cols=97  Identities=19%  Similarity=0.241  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhHH
Q 006828          296 VLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLR-EKNDI  374 (629)
Q Consensus       296 ~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~-e~~~l  374 (629)
                      .++.++..+...+..+......+...+......+..+...+.............+..+..+...++..+..... .+..+
T Consensus       604 ~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  683 (1201)
T PF12128_consen  604 ELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQI  683 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444555554444444445555444444444444444444444444444444444444444433333222 22333


Q ss_pred             HHHHHhhHhHHHHHHHHH
Q 006828          375 EERKVCQDNEISGLHKEI  392 (629)
Q Consensus       375 ~e~~~~~e~el~~l~~el  392 (629)
                      ...+..++.++..+..++
T Consensus       684 ~~~l~~l~~~l~~~~~e~  701 (1201)
T PF12128_consen  684 EEQLNELEEELKQLKQEL  701 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444333

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.38  E-value=0.0055  Score=71.56  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=23.1

Q ss_pred             chhhhhhhhHHHHHHHHHHHHhHHHhH
Q 006828          128 GLDEEKNERENEIIALKSEVSGLMGNI  154 (629)
Q Consensus       128 ~vd~~~~~Rk~Ei~~L~eela~l~~~~  154 (629)
                      .|..|-..-|.|+..|++++.+-..+.
T Consensus       133 dVE~IA~k~PkElt~LFEEISgSiElK  159 (1141)
T KOG0018|consen  133 DVEKIAGKNPKELTALFEEISGSIELK  159 (1141)
T ss_pred             hHHHHhccCHHHHHHHHHHHhhhhhhh
Confidence            478999999999999999998876633

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.36  E-value=0.00036  Score=79.66  Aligned_cols=25  Identities=4%  Similarity=-0.223  Sum_probs=15.6

Q ss_pred             hhhhhhhhHHHHHHHHHHHHhHHHh
Q 006828          129 LDEEKNERENEIIALKSEVSGLMGN  153 (629)
Q Consensus       129 vd~~~~~Rk~Ei~~L~eela~l~~~  153 (629)
                      |...+...+.++..+...+-++..+
T Consensus       141 f~~f~~~~~~er~~il~~l~~~~~~  165 (562)
T PHA02562        141 YVPFMQLSAPARRKLVEDLLDISVL  165 (562)
T ss_pred             hhhHhcCChHhHHHHHHHHhCCHHH
Confidence            4455556666667777777666543

>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]

Probab=98.32  E-value=0.016  Score=67.30  Aligned_cols=52  Identities=21%  Similarity=0.125  Sum_probs=30.5

Q ss_pred             HHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccch
Q 006828           46 EQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQK  104 (629)
Q Consensus        46 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~  104 (629)
                      .+-.-|+.-+++|=+=-.-=|++.+.=+.       .|.+--.|+++|++||+..+-..
T Consensus       170 ~~~~hL~velAdle~kir~LrqElEEK~e-------nll~lr~eLddleae~~klrqe~  221 (1195)
T KOG4643|consen  170 KKNLHLEVELADLEKKIRTLRQELEEKFE-------NLLRLRNELDDLEAEISKLRQEI  221 (1195)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456777777765555555566555442       35555566677777766655443

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.31  E-value=0.0024  Score=72.95  Aligned_cols=24  Identities=4%  Similarity=0.065  Sum_probs=16.4

Q ss_pred             hhhHHHHHhhHhHhhhcchhhhhh
Q 006828          111 KGLFCVFLMTQMKEMGEGLDEEKN  134 (629)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~vd~~~~  134 (629)
                      ++-+.-|...+|...+.-|+++++
T Consensus       138 q~~f~~f~~~~~~er~~il~~l~~  161 (562)
T PHA02562        138 TAGYVPFMQLSAPARRKLVEDLLD  161 (562)
T ss_pred             cCchhhHhcCChHhHHHHHHHHhC
Confidence            455666777777777777776665

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=98.29  E-value=0.0048  Score=68.46  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHh
Q 006828          181 EASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGD  223 (629)
Q Consensus       181 ~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~  223 (629)
                      .-.+-+..+..|...+..+-..+..|..+...|..++..+...
T Consensus        36 sR~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~   78 (546)
T KOG0977|consen   36 SREREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGV   78 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4444566777777777666666666666666666655555333

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.26  E-value=0.029  Score=67.89  Aligned_cols=14  Identities=21%  Similarity=0.506  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHH
Q 006828          506 EAKRNADDLRAKME  519 (629)
Q Consensus       506 ~~~k~i~~Lk~~I~  519 (629)
                      .+...+..+...+.
T Consensus       658 ~~~~~~~~~~~~~~  671 (908)
T COG0419         658 ELEEKVEELEAEIR  671 (908)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33444444444443

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=0.02  Score=65.32  Aligned_cols=164  Identities=12%  Similarity=0.078  Sum_probs=108.8

Q ss_pred             HHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 006828          361 EGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKD  440 (629)
Q Consensus       361 ~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~  440 (629)
                      ...++++......|..++...+..--.+-.+.......+..+..++..+...+.++......+...+..+......+...
T Consensus       460 gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~  539 (698)
T KOG0978|consen  460 GSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSN  539 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            33344444444444444444444444444444444444444444444455555555444443333333332222222234


Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828          441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES  520 (629)
Q Consensus       441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~  520 (629)
                      ......++..+...|..++.--..+-..+..++...+...++..|+..++..+..+++.+......+..++..|+..+..
T Consensus       540 ~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~  619 (698)
T KOG0978|consen  540 ESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLER  619 (698)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566777778888888888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccc
Q 006828          521 IGFN  524 (629)
Q Consensus       521 lg~v  524 (629)
                      +|..
T Consensus       620 ~k~~  623 (698)
T KOG0978|consen  620 LKKE  623 (698)
T ss_pred             hccc
Confidence            9886

>PRK04863 mukB cell division protein MukB; Provisional

Probab=98.20  E-value=0.05  Score=68.18  Aligned_cols=42  Identities=12%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc
Q 006828          483 RKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN  524 (629)
Q Consensus       483 ~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v  524 (629)
                      ..+.+..++.+....+........++.+...|...|..+-.-
T Consensus       560 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~~  601 (1486)
T PRK04863        560 QEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR  601 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344455555555555555555556666666666666655543

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]

Probab=98.10  E-value=0.018  Score=59.14  Aligned_cols=52  Identities=23%  Similarity=0.337  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          360 KEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQD  411 (629)
Q Consensus       360 l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~  411 (629)
                      ....+.++......+......+-.++.++...+..+...+..++..+..+..
T Consensus       191 ~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k  242 (294)
T COG1340         191 YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEK  242 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333333333333333

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.01  E-value=0.059  Score=62.22  Aligned_cols=56  Identities=21%  Similarity=0.180  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 006828          160 RLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKK  215 (629)
Q Consensus       160 ~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~  215 (629)
                      ++..+..++...+..++....+..++.....++......++.+...++.++.+++.
T Consensus        35 ~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~   90 (717)
T PF09730_consen   35 RILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKF   90 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444555555555555555555555555555555555444444

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=98.01  E-value=2.5e-05  Score=91.65  Aligned_cols=57  Identities=19%  Similarity=0.269  Sum_probs=0.0

Q ss_pred             hhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          370 EKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSA  426 (629)
Q Consensus       370 e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~  426 (629)
                      ....+......+...+..+...+..+...+.+++....-...+++.+...|..|+..
T Consensus       372 ~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e  428 (722)
T PF05557_consen  372 EIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKE  428 (722)
T ss_dssp             ---------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            333333333334444444444444444444555555555555666666656555543

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.97  E-value=0.065  Score=61.40  Aligned_cols=263  Identities=15%  Similarity=0.157  Sum_probs=123.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ  415 (629)
Q Consensus       336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~  415 (629)
                      ...+.++...++..+..-......+...+.++......+.+.+.....++..+..+...+...+..+...+..+-.+...
T Consensus       176 Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~q~l~~e~e~  255 (617)
T PF15070_consen  176 FVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAYQQLASEKEE  255 (617)
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555555555544444444555555666666666666666666666666666666666666665555555555555


Q ss_pred             HHHHHHH----------HH----HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhch------------------H
Q 006828          416 LVNELAD----------YK----SALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRF------------------E  463 (629)
Q Consensus       416 l~~~l~~----------y~----~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN------------------~  463 (629)
                      +...+..          +.    ..++....+.......+..+...-..|+..+..+-.-.                  +
T Consensus       256 L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~eg~~~~~~~~~ee~~~~~~  335 (617)
T PF15070_consen  256 LHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGEGDGLESESEEEEAPQPMP  335 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCCCcccccccccccccCcCc
Confidence            5444321          00    01111111111111234444444445555554321111                  1


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh--cc------c------hH-HH
Q 006828          464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI--GF------N------SD-RA  528 (629)
Q Consensus       464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l--g~------v------ai-ee  528 (629)
                      ...+.++.-..-..|+..-...+......|...+..-...-..+...+..+...-...  +|      |      |. ..
T Consensus       336 ~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~~~~~dsV~~E~h~aLq~a  415 (617)
T PF15070_consen  336 SIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAPGTGGDSVPGETHQALQEA  415 (617)
T ss_pred             ccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCcccCCCCCCccchHHHHHH
Confidence            1112233333344566555555555555555444333222223333333333322221  11      2      22 25


Q ss_pred             HHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhh--hhhHHHHHHHHH----HHHHHHccchhHhH-------HHHHHHHHH
Q 006828          529 LSMLKNTAAMVCQSEND-IDGQQELV-VDEKK--LQGETDQYAAEF----QAIVNAFRNREKLV-------EDMKHRVEL  593 (629)
Q Consensus       529 ~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~--~~~m~~~f~~~f----~~i~~~F~~~~~~~-------~~~~~~~~~  593 (629)
                      .+.+..||-=+-....| .+-++.|+ .+-.+  ..+.+..|..-|    ..++..+..|+..|       +.||-.+--
T Consensus       416 mekLq~~f~~~~~e~adl~e~~e~le~~~~ql~~et~ti~eyi~ly~~qr~~~k~r~~e~~~~i~~l~~~~e~mk~kl~e  495 (617)
T PF15070_consen  416 MEKLQSRFMDLMEEKADLKERVEKLEHRFIQLSGETDTIGEYITLYQSQRAVLKQRHQEKEEYISRLAQDREEMKVKLLE  495 (617)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccCccchhhhhccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666776555566666 66777777 43333  222333333222    23444444666555       456666666


Q ss_pred             HhhhH
Q 006828          594 MQNSV  598 (629)
Q Consensus       594 ~~~~~  598 (629)
                      |+.-|
T Consensus       496 lq~lv  500 (617)
T PF15070_consen  496 LQELV  500 (617)
T ss_pred             HHHHH
Confidence            66555

>PRK11637 AmiB activator; Provisional

Probab=97.95  E-value=0.011  Score=65.21  Aligned_cols=65  Identities=9%  Similarity=0.154  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          347 SHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQD  411 (629)
Q Consensus       347 e~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~  411 (629)
                      ......+...+..+...+.++..++..|..........+..|...+......+..+.....++..
T Consensus       183 ~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~  247 (428)
T PRK11637        183 AAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRD  247 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333334444444444444444444444444444444444444444444444333333333

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.93  E-value=0.065  Score=59.90  Aligned_cols=40  Identities=20%  Similarity=0.135  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 006828          138 NEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC  177 (629)
Q Consensus       138 ~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~  177 (629)
                      .+++.+..++.-+...++.-+.++........-+.+.+..
T Consensus       346 ~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n  385 (961)
T KOG4673|consen  346 LELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLN  385 (961)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566777777777777776666666666655555444433

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=97.92  E-value=0.11  Score=62.03  Aligned_cols=18  Identities=22%  Similarity=0.097  Sum_probs=9.8

Q ss_pred             CChhhhcccccccccchh
Q 006828           17 NPQEQKNNQNLTQGKTVA   34 (629)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~   34 (629)
                      .|.+-..|+=|-.|-|..
T Consensus       386 ~~~~f~Gn~LPFIGfTy~  403 (1317)
T KOG0612|consen  386 IPKAFSGNHLPFIGFTYT  403 (1317)
T ss_pred             CCCCCcCCcCCeeeeeec
Confidence            334444556666666655

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.89  E-value=0.0076  Score=69.84  Aligned_cols=109  Identities=25%  Similarity=0.210  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHH----
Q 006828          356 VLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA-D--YKSALD----  428 (629)
Q Consensus       356 el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~-~--y~~~le----  428 (629)
                      ...+++.++..+..+....++.+..++.++..++....+-..+..-|-..+.-++++..++...|. +  +++++=    
T Consensus       546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLfsaLg  625 (697)
T PF09726_consen  546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLFSALG  625 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555444443111222334444444455555555555554 2  222222    


Q ss_pred             HHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH
Q 006828          429 QATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE  464 (629)
Q Consensus       429 ~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~  464 (629)
                      ++...++.....+..-..+|..|+..|.++..|-|+
T Consensus       626 ~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~av~p~  661 (697)
T PF09726_consen  626 DAKRQLEIAQGQLRKKDKEIEELKAKIAQLLAVMPS  661 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            222233332344555678889999999999888765

; GO: 0016021 integral to membrane

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.88  E-value=0.02  Score=65.02  Aligned_cols=31  Identities=23%  Similarity=0.321  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHhHHHHHH
Q 006828          441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAK  471 (629)
Q Consensus       441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyee  471 (629)
                      +......+..|+..+..||.-...-+++...
T Consensus       920 ~~~~~~~i~alk~~l~dL~q~~eeie~e~~s  950 (970)
T KOG0946|consen  920 LADQKEKIQALKEALEDLNQPVEEIEDEKVS  950 (970)
T ss_pred             HhhHHHHHHHHHHHHHHhCCChhhHHhhhhc
Confidence            4455666777777777777665554444443

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.83  E-value=0.098  Score=58.75  Aligned_cols=157  Identities=13%  Similarity=0.138  Sum_probs=92.8

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHH
Q 006828          440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGL-------LAEEKELMQKNLLEAKRNAD  512 (629)
Q Consensus       440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~-------L~~e~~~l~~~l~~~~k~i~  512 (629)
                      ++...++....+-.+|..|+..|...-.+++.+++.   +..+.+++...+..       ..-++....+.+..+...+.
T Consensus       521 di~~~k~qee~~~kqie~Lee~~~~Lrneles~~ee---l~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~lenk~~  597 (786)
T PF05483_consen  521 DINNSKKQEEKMLKQIENLEETNTQLRNELESVKEE---LKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILENKCN  597 (786)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHHHHHH
Confidence            455566666777777888888887776666655443   33344444444433       33333333444444444455


Q ss_pred             HHHHHHHhhccchHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhh---hHHHHHHHHHHHHHHHccchhHhHHHH
Q 006828          513 DLRAKMESIGFNSDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQ---GETDQYAAEFQAIVNAFRNREKLVEDM  587 (629)
Q Consensus       513 ~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~---~m~~~f~~~f~~i~~~F~~~~~~~~~~  587 (629)
                      .|+..|+.-.. .|++   +...-..|..+..- ..--..+. -|..+..   .+..+|.+.-+.+.....++....+.+
T Consensus       598 ~LrKqvEnk~K-~iee---LqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L  673 (786)
T PF05483_consen  598 NLRKQVENKNK-NIEE---LQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEEL  673 (786)
T ss_pred             HHHHHHHHHHh-HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHH
Confidence            55554442211 4444   33344445555443 22223333 4555443   445677777777777777999999999


Q ss_pred             HHHHHHHhhhH-Hhhcc
Q 006828          588 KHRVELMQNSV-EAQKK  603 (629)
Q Consensus       588 ~~~~~~~~~~~-~~~~~  603 (629)
                      -.+|+.++..+ ||-|-
T Consensus       674 ~~EveK~k~~a~EAvK~  690 (786)
T PF05483_consen  674 LGEVEKAKLTADEAVKL  690 (786)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            99999999999 99883

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site

Probab=97.80  E-value=0.12  Score=59.04  Aligned_cols=65  Identities=18%  Similarity=0.005  Sum_probs=36.5

Q ss_pred             hhhhhhHHHhhhhhccchhhhhhhh---hhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHH
Q 006828           87 GVEKSELLAELSGESDQKVSLEIEK---GLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLM  151 (629)
Q Consensus        87 ~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~  151 (629)
                      -++++.|..+...+.+-.+.-++-+   --..+=++.++...+-.||+|.+.+=.+|..+..++.+..
T Consensus        24 ~k~i~~Le~~k~~l~~~pv~~el~kvk~l~l~Gqt~~~fe~w~~~w~~i~~~~~~~ie~~L~~ae~~~   91 (560)
T PF06160_consen   24 YKEIDELEERKNELMNLPVADELSKVKKLNLTGQTEEKFEEWRQKWDEIVTKQLPEIEEQLFEAEEYA   91 (560)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3455555555555555555555552   1122334445566666777777777777777666555443

EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.037  Score=63.01  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc
Q 006828          484 KKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF  523 (629)
Q Consensus       484 ~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~  523 (629)
                      +.|.-.+.+..+|.+.+.-.+......+..|+..++.||.
T Consensus       900 ~nl~lki~s~kqeqee~~v~~~~~~~~i~alk~~l~dL~q  939 (970)
T KOG0946|consen  900 ENLSLKIVSNKQEQEELLVLLADQKEKIQALKEALEDLNQ  939 (970)
T ss_pred             ccchhcccchhhhHHHHHHHHhhHHHHHHHHHHHHHHhCC
Confidence            4455566677777777777777778888899999999986

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=97.76  E-value=0.00028  Score=82.98  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          465 KVEELAKTRNERETLVDLRKKMESHIGLLAEEKEL  499 (629)
Q Consensus       465 AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~  499 (629)
                      .-+++..++.++..|.....-|..++..|+.++..
T Consensus       501 ~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  501 LSEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666666666666666655553

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=97.74  E-value=0.045  Score=52.44  Aligned_cols=45  Identities=13%  Similarity=0.201  Sum_probs=35.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHH
Q 006828          438 WKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDL  482 (629)
Q Consensus       438 ~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q  482 (629)
                      ...-+...+.+..|...++.|.+.++..-.+|..+...++.....
T Consensus       157 E~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD~~~~~  201 (205)
T KOG1003|consen  157 ETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELDETLQE  201 (205)
T ss_pred             hhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence            344566778999999999999999999999988887777665443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.16  Score=57.75  Aligned_cols=96  Identities=21%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          254 VIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQ  333 (629)
Q Consensus       254 ~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~  333 (629)
                      ++..+...-++.+-.++.....++.++..|+..+..|...+.+++..+......+............+++.+..++.+..
T Consensus       420 em~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q  499 (1118)
T KOG1029|consen  420 EMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQ  499 (1118)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444455666677777777777777777776666666666666666666666666666666666655555


Q ss_pred             HHHHHHHHhHHHHHHH
Q 006828          334 KRIERLIEEKDEISHR  349 (629)
Q Consensus       334 ~~l~~l~~e~~~le~~  349 (629)
                      .-+..+.-+...+...
T Consensus       500 ~kl~~l~~Ekq~l~~q  515 (1118)
T KOG1029|consen  500 EKLQKLAPEKQELNHQ  515 (1118)
T ss_pred             HHHHhhhhHHHHHHHH
Confidence            5555554444444333

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=97.71  E-value=0.052  Score=63.10  Aligned_cols=32  Identities=22%  Similarity=0.457  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006828          186 KDRLIEMEGKERNLRSEILVLQSDYGRLKKEK  217 (629)
Q Consensus       186 ~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~  217 (629)
                      +..+..+......+..++..++.+.+.|+..+
T Consensus       445 Rsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl  476 (697)
T PF09726_consen  445 RSQISSLTNNERSLKSELSQLRQENEQLQNKL  476 (697)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333444444333333333

; GO: 0016021 integral to membrane

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.70  E-value=0.015  Score=58.27  Aligned_cols=67  Identities=24%  Similarity=0.243  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          242 EKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENSC  308 (629)
Q Consensus       242 ~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l  308 (629)
                      ..+++.+.-.+......+..+...++.+...+..++..+..+..++..+...+..++.++...+..+
T Consensus        16 D~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          16 DLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333344444444444444444444444444444333333344443333

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.68  E-value=0.23  Score=58.66  Aligned_cols=63  Identities=22%  Similarity=0.333  Sum_probs=36.3

Q ss_pred             CCCCCcHHHHHhhhhhh----------HHHhhHhHHHHHHhHHHHHHHHHHHHHHH-------hhhhhhhhHHHhhhhhc
Q 006828           39 NSMEDPSEQIKRLKSLN----------DLLVHRSHEQRQQVESLSQAKAALEAELS-------LFGVEKSELLAELSGES  101 (629)
Q Consensus        39 ~~~~~~~~~~~~l~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~~~l~~~~~~~~  101 (629)
                      |+..+-++|++-.+.+=          +-|.+.+..-|.||-.++--=..+|..|+       .++++.+.|.+++..+-
T Consensus      1201 s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~ 1280 (1758)
T KOG0994|consen 1201 SRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLL 1280 (1758)
T ss_pred             hHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHH
Confidence            34444555555554432          33556666667777766665556666655       45666666666665543

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=97.67  E-value=0.24  Score=58.60  Aligned_cols=30  Identities=17%  Similarity=-0.059  Sum_probs=17.8

Q ss_pred             HhhhcchhhhhhhhHHHHHHHHHHHHhHHH
Q 006828          123 KEMGEGLDEEKNERENEIIALKSEVSGLMG  152 (629)
Q Consensus       123 ~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~  152 (629)
                      ..|-...|.-|.+...|...+..-+.+...
T Consensus      1414 ~~~A~~~~~~l~~~~ae~eq~~~~v~ea~~ 1443 (1758)
T KOG0994|consen 1414 LLMAGDADTQLRSKLAEAEQTLSMVREAKL 1443 (1758)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777776666666555544443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.64  E-value=0.17  Score=56.14  Aligned_cols=87  Identities=16%  Similarity=0.302  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHH
Q 006828          178 QVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLL---GKRLVGLEKETDDLKLKIKV  254 (629)
Q Consensus       178 ~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l---~~el~el~~ei~~l~~~ie~  254 (629)
                      ++.+++-...-+..+..........+..+..++..-..+++.+......|...+..-   -.++.....+.+.+...+..
T Consensus       271 L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~  350 (581)
T KOG0995|consen  271 LQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNK  350 (581)
T ss_pred             HHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333444444433333333333333333333333321   12333344444444444444


Q ss_pred             HHHHHHHHHh
Q 006828          255 IVKEKNAIEM  264 (629)
Q Consensus       255 l~~el~ele~  264 (629)
                      +..++..+.+
T Consensus       351 i~~~~d~l~k  360 (581)
T KOG0995|consen  351 IQSELDRLSK  360 (581)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.62  E-value=0.071  Score=51.26  Aligned_cols=82  Identities=20%  Similarity=0.195  Sum_probs=31.7

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ  415 (629)
Q Consensus       336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~  415 (629)
                      +..+..+...+......+.....++-.....+....-.++.-+...++.+.+-...+..+...+..+..-...++.++.+
T Consensus       104 i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s~  183 (193)
T PF14662_consen  104 IETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKSR  183 (193)
T ss_pred             HHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444343333333333333333333333333333333344444444444444443333333333333333333


Q ss_pred             HH
Q 006828          416 LV  417 (629)
Q Consensus       416 l~  417 (629)
                      +.
T Consensus       184 LE  185 (193)
T PF14662_consen  184 LE  185 (193)
T ss_pred             HH
Confidence            33

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.62  E-value=1.3e-05  Score=94.00  Aligned_cols=41  Identities=15%  Similarity=0.260  Sum_probs=0.0

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHh
Q 006828          554 VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQ  595 (629)
Q Consensus       554 ~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~  595 (629)
                      ||..++..... ....|..++.....++..|+.|.++++..+
T Consensus       609 vi~~Ld~k~~~-~~~e~~~L~~ql~e~~~~i~~lE~~~e~~k  649 (713)
T PF05622_consen  609 VIKTLDPKQNP-SSPEIQALKKQLQEKDRRIESLEKELEKSK  649 (713)
T ss_dssp             ------------------------------------------
T ss_pred             HhhccChhccC-ChHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            66666665555 778888999999999999999999998877

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.61  E-value=0.28  Score=57.89  Aligned_cols=205  Identities=10%  Similarity=0.153  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchH
Q 006828          384 EISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE  463 (629)
Q Consensus       384 el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~  463 (629)
                      .+..|......+..++..+.. ..   .+..+....+..++..+......+......++....++..+...|..+||-..
T Consensus       653 ~~~~L~~~k~rl~eel~ei~~-~~---~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~  728 (1141)
T KOG0018|consen  653 EVDQLKEKKERLLEELKEIQK-RR---KEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEIS  728 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-hh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHH
Confidence            344444444444444444433 11   14444444444444444433333333234556666666677777777777665


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------
Q 006828          464 EKVEELAKTRNERETLVDLRKKMESHIG------------LLAEEKELMQKNLLEAKRNADDLRAKMESIGFN-------  524 (629)
Q Consensus       464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~------------~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-------  524 (629)
                      ..-.++.....+...|..+.+.++.++=            .++..  .+   -..-.++.-++..++..|+.-       
T Consensus       729 ~i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~--~~---~~~~a~k~~ef~~q~~~l~~~l~fe~~~  803 (1141)
T KOG0018|consen  729 EIKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEER--EL---QQEFAKKRLEFENQKAKLENQLDFEKQK  803 (1141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHH--HH---HHHHHHHHHHHHHHHHHHhhhhhheecc
Confidence            4444444444444444444444433321            01100  00   111122223333344444331       


Q ss_pred             -hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhH
Q 006828          525 -SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSV  598 (629)
Q Consensus       525 -aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~  598 (629)
                       .-..|++...-.+=+....++ ......+. .|.++ ..|..+=.+.|+.+...|+.-.+.+.+|-.++-.|..-+
T Consensus       804 d~~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~e~-~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i  879 (1141)
T KOG0018|consen  804 DTQRRVERWERSVEDLEKEIEGLKKDEEAAEKIIAEI-EELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEI  879 (1141)
T ss_pred             cHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence             222333333333333333444 33444444 55555 555555477777777777777777777777666665443

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.60  E-value=0.22  Score=56.56  Aligned_cols=48  Identities=17%  Similarity=0.174  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          359 DKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASC  406 (629)
Q Consensus       359 ~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~  406 (629)
                      ..+.....+.....+++.+....-.++.-+..++.+++..++.....+
T Consensus       539 ~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lak  586 (1118)
T KOG1029|consen  539 KKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAK  586 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            333333444444444444444444455555555555555554444443

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.59  E-value=0.19  Score=55.62  Aligned_cols=20  Identities=15%  Similarity=0.169  Sum_probs=13.7

Q ss_pred             ccchhhhhhh-hhhHHHHHhh
Q 006828          101 SDQKVSLEIE-KGLFCVFLMT  120 (629)
Q Consensus       101 ~~~~~~~~~~-~~~~~~~~~~  120 (629)
                      .++.+++.+. +|-.+-|+..
T Consensus        88 f~~~iS~k~l~~PS~KdF~~i  108 (581)
T KOG0995|consen   88 FSHPISIKLLMKPSVKDFIAI  108 (581)
T ss_pred             CCCChhhhhcCCCccccHHHH
Confidence            4588888888 5666666554

>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]

Probab=97.50  E-value=0.28  Score=55.06  Aligned_cols=91  Identities=18%  Similarity=0.120  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhcc----c-hHH-HHHHHHHHHHHHhhhhhh-Hh
Q 006828          475 ERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF----N-SDR-ALSMLKNTAAMVCQSEND-ID  547 (629)
Q Consensus       475 RyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~----v-aie-e~~~~ker~~fl~~q~~D-~~  547 (629)
                      -|+.|..|+   +..+..|+-++..+...-..+..++-.|..+.+.|-.    | .|+ +|+.+.-||+-+-+-|-. .+
T Consensus       856 h~eall~Qr---eGElthlq~e~~~le~~Rs~laeElvklT~e~e~l~ek~~~~p~~~~~ledL~qRy~a~LqmyGEk~E  932 (961)
T KOG4673|consen  856 HYEALLRQR---EGELTHLQTELASLESIRSSLAEELVKLTAECEKLREKADRVPGIKAELEDLRQRYAAALQMYGEKDE  932 (961)
T ss_pred             HHHHHHHhh---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            444455552   3344444444444444444444444444444444433    2 444 899999999888887776 55


Q ss_pred             hhhHhH-HHHhhhhhHHHHHHHHHHH
Q 006828          548 GQQELV-VDEKKLQGETDQYAAEFQA  572 (629)
Q Consensus       548 ak~~l~-~i~~~~~~m~~~f~~~f~~  572 (629)
                      --+.|. -+-++    +..|....+.
T Consensus       933 e~EELrlDl~dl----K~mYk~QIde  954 (961)
T KOG4673|consen  933 ELEELRLDLVDL----KEMYKEQIDE  954 (961)
T ss_pred             HHHHHHhhHHHH----HHHHHHHHHH
Confidence            555555 44433    3444444443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=97.49  E-value=0.029  Score=56.32  Aligned_cols=23  Identities=13%  Similarity=0.161  Sum_probs=16.4

Q ss_pred             HhhhhhHHHHHHHHHHHHHHHcc
Q 006828          556 EKKLQGETDQYAAEFQAIVNAFR  578 (629)
Q Consensus       556 ~~~~~~m~~~f~~~f~~i~~~F~  578 (629)
                      ..+...|-..|...|+.|..+|.
T Consensus       166 ~~L~~~l~~ell~~yeri~~~~k  188 (239)
T COG1579         166 EELKEKLDPELLSEYERIRKNKK  188 (239)
T ss_pred             HHHHHhcCHHHHHHHHHHHhcCC
Confidence            34555666778888888888884

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms

Probab=97.45  E-value=2.9e-05  Score=90.95  Aligned_cols=8  Identities=0%  Similarity=0.326  Sum_probs=0.0

Q ss_pred             HHHhhhhh
Q 006828          537 AMVCQSEN  544 (629)
Q Consensus       537 ~fl~~q~~  544 (629)
                      .||.+|+.
T Consensus       688 sfL~rqR~  695 (713)
T PF05622_consen  688 SFLARQRQ  695 (713)
T ss_dssp             --------
T ss_pred             cHHHHhhc
Confidence            45555544

The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.

>PRK09039 hypothetical protein; Validated

Probab=97.38  E-value=0.031  Score=59.75  Aligned_cols=62  Identities=18%  Similarity=0.200  Sum_probs=41.7

Q ss_pred             HHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHH
Q 006828          116 VFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDC  177 (629)
Q Consensus       116 ~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~  177 (629)
                      +|+=+=++..-.++...+++++.++..|..+++++..-+.--......+...+..+...+..
T Consensus        31 ~f~l~~f~~~q~fLs~~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~   92 (343)
T PRK09039         31 MFLLTVFVVAQFFLSREISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSA   92 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            34444555666788899999999999999999987766655555555555555444444443

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=97.35  E-value=0.47  Score=54.30  Aligned_cols=31  Identities=16%  Similarity=0.265  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 006828          398 VVFKLKASCRDQQDKSKQLVNELA-DYKSALD  428 (629)
Q Consensus       398 ~l~~le~~~~~le~ei~~l~~~l~-~y~~~le  428 (629)
                      +|.+.-.....++.++..+..++. .|..+-+
T Consensus       506 eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE  537 (594)
T PF05667_consen  506 EIEKILSDTRELQKEINSLTGKLDRTFTVTDE  537 (594)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            333333344445555555555554 4444433

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=97.34  E-value=0.55  Score=54.84  Aligned_cols=96  Identities=16%  Similarity=0.097  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 006828          441 LDEQRKSGMDLRLKLSEMEKRFEE--KVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKM  518 (629)
Q Consensus       441 l~~~k~~i~~Lk~eI~~LG~vN~~--AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I  518 (629)
                      +..+..++..+..+|..+..-...  ..+.|..+.++++.+......+...+..+..++..+.+.+..+.+++..+....
T Consensus       393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  472 (650)
T TIGR03185       393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKTKQK  472 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555556666666666554433  246777777777777777777777777777777777777766666666555555


Q ss_pred             Hhhccc--hHHHHHHHHHHH
Q 006828          519 ESIGFN--SDRALSMLKNTA  536 (629)
Q Consensus       519 ~~lg~v--aiee~~~~ker~  536 (629)
                      ...-..  .+.....+.+.+
T Consensus       473 ~~~~~~~~~~~~~~~~~~~l  492 (650)
T TIGR03185       473 INAFELERAITIADKAKKTL  492 (650)
T ss_pred             HhhhhHHHHHHHHHHHHHHH
Confidence            444333  444444444444

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=97.28  E-value=0.58  Score=53.80  Aligned_cols=19  Identities=26%  Similarity=0.543  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 006828          275 ELEKEVNKLNEIVLALQKE  293 (629)
Q Consensus       275 ele~ela~l~e~l~~l~~~  293 (629)
                      +|...+.+++..+..+...
T Consensus       164 eLK~QL~Elq~~Fv~ltne  182 (617)
T PF15070_consen  164 ELKEQLAELQDAFVKLTNE  182 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            4444444444444444444

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=97.27  E-value=0.2  Score=48.30  Aligned_cols=124  Identities=15%  Similarity=0.212  Sum_probs=69.7

Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHH
Q 006828          163 QACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLE  242 (629)
Q Consensus       163 ~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~  242 (629)
                      +|..+...+...+.....--.++...+..+..++..+.    .+-..+..+..++.+++.....+......+...-..++
T Consensus        19 ~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q----qal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlE   94 (193)
T PF14662_consen   19 KLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ----QALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLE   94 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444455555555555555553    33333555666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHH
Q 006828          243 KETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLAL  290 (629)
Q Consensus       243 ~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l  290 (629)
                      .+...|-..|..++.+...+....+.++..+.+|-..-..+..++..+
T Consensus        95 kE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~  142 (193)
T PF14662_consen   95 KEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEF  142 (193)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            666666666666666666666666666666555555444444444333

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=97.24  E-value=0.23  Score=48.60  Aligned_cols=89  Identities=16%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             hhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          131 EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDY  210 (629)
Q Consensus       131 ~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~  210 (629)
                      .++|.|-..|..|..++.++...+........-|..-.-.....+......-..+-..+......+..+...+......+
T Consensus         5 rvlSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~   84 (194)
T PF15619_consen    5 RVLSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQE   84 (194)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999998887777766665544433333333333333333344444444444444444444444


Q ss_pred             hHHHHHHhh
Q 006828          211 GRLKKEKNE  219 (629)
Q Consensus       211 ~~L~~E~~~  219 (629)
                      ..+...+..
T Consensus        85 r~~~~klk~   93 (194)
T PF15619_consen   85 RELERKLKD   93 (194)
T ss_pred             HHHHHHHHH
Confidence            433333333

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex

Probab=97.19  E-value=0.63  Score=52.58  Aligned_cols=150  Identities=14%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828          442 DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI  521 (629)
Q Consensus       442 ~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l  521 (629)
                      ..+.-....+..+...+-+..-..-+....-+..-+.+..|...|+..-..|+.+++++...+......+...-...+.-
T Consensus       495 nkLslEkk~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen  574 (786)
T PF05483_consen  495 NKLSLEKKQLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEEN  574 (786)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            34444455555555555555555556666666667777777777777777777777777777766666554322222211


Q ss_pred             cc-----c--hHHHHHHHHHHHHHHhhhhhh-HhhhhHhHHHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHH
Q 006828          522 GF-----N--SDRALSMLKNTAAMVCQSEND-IDGQQELVVDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVEL  593 (629)
Q Consensus       522 g~-----v--aiee~~~~ker~~fl~~q~~D-~~ak~~l~~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~  593 (629)
                      +.     +  ....+..+.+-..+|..|..- ......|.   .-.+..+..-...-..++.+    +..|..+.-+++.
T Consensus       575 ~r~~e~e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLq---qeNk~LKKk~~aE~kq~~~~----eikVn~L~~E~e~  647 (786)
T PF05483_consen  575 ARSIECEILKKEKQMKILENKCNNLRKQVENKNKNIEELQ---QENKALKKKITAESKQSNVY----EIKVNKLQEELEN  647 (786)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence            11     1  334556666777777777664 33333332   22233333444444444444    3344444444444


Q ss_pred             HhhhH
Q 006828          594 MQNSV  598 (629)
Q Consensus       594 ~~~~~  598 (629)
                      ++.-.
T Consensus       648 ~kk~~  652 (786)
T PF05483_consen  648 LKKKH  652 (786)
T ss_pred             HHhHH
Confidence            44433

Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=97.07  E-value=0.7  Score=50.95  Aligned_cols=78  Identities=21%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828          444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI  521 (629)
Q Consensus       444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l  521 (629)
                      ..++++.+...+..+-..-...---|..+...++.+..+..++......+...+.+++++--.++..+..+++.|..+
T Consensus       352 ~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~l~ei  429 (570)
T COG4477         352 FEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI  429 (570)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555444444444445577777777888888777777777777777777777666666666666665544

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=97.03  E-value=0.68  Score=50.04  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHH----------HHHhHHHH
Q 006828          175 LDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGK----------RLVGLEKE  244 (629)
Q Consensus       175 l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~----------el~el~~e  244 (629)
                      +..+......+....+-...-...++......-..+..++.++...+++|..++.....+..          +......+
T Consensus       297 i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~E  376 (622)
T COG5185         297 IKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQE  376 (622)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            33333344444444443333333333333333333444444444444444444444444433          33344444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHH
Q 006828          245 TDDLKLKIKVIVKEKNAIEMQNSEQ  269 (629)
Q Consensus       245 i~~l~~~ie~l~~el~ele~~~e~l  269 (629)
                      ...|...++.+..+...+.+.....
T Consensus       377 re~L~reL~~i~~~~~~L~k~V~~~  401 (622)
T COG5185         377 REKLTRELDKINIQSDKLTKSVKSR  401 (622)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHhH
Confidence            5555555555555554444444333

>PRK09039 hypothetical protein; Validated

Probab=96.97  E-value=0.22  Score=53.36  Aligned_cols=50  Identities=14%  Similarity=0.102  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          160 RLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSD  209 (629)
Q Consensus       160 ~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e  209 (629)
                      .|..+...+..+..-+..-.....++...+..+..++..++.....+...
T Consensus        54 eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~  103 (343)
T PRK09039         54 ALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL  103 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444455555555555555555444444444443

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.84  E-value=0.83  Score=48.14  Aligned_cols=50  Identities=16%  Similarity=0.177  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 006828          140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRL  189 (629)
Q Consensus       140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l  189 (629)
                      +..|.....++..........+..+......+....+.+..++.......
T Consensus        24 ~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k   73 (309)
T PF09728_consen   24 LEALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAK   73 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666666666666666666666655555555555555443333

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=96.77  E-value=1.5  Score=50.19  Aligned_cols=26  Identities=15%  Similarity=0.219  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          395 LRDVVFKLKASCRDQQDKSKQLVNEL  420 (629)
Q Consensus       395 l~~~l~~le~~~~~le~ei~~l~~~l  420 (629)
                      +...+.+-+.++.++-.....++..+
T Consensus       496 Iv~NI~KQk~eI~KIl~DTr~lQkei  521 (594)
T PF05667_consen  496 IVKNIRKQKEEIEKILSDTRELQKEI  521 (594)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=96.76  E-value=1.7  Score=50.55  Aligned_cols=24  Identities=38%  Similarity=0.445  Sum_probs=14.0

Q ss_pred             hhhHHHHHHHHHHHHhHHHhHHHH
Q 006828          134 NERENEIIALKSEVSGLMGNIENE  157 (629)
Q Consensus       134 ~~Rk~Ei~~L~eela~l~~~~~~~  157 (629)
                      ..|+..+..+..+++++...+...
T Consensus       329 d~~~~~~~~~~~e~~~~~~~l~~~  352 (980)
T KOG0980|consen  329 DPRELQIEQLSREVAQLKAQLENL  352 (980)
T ss_pred             ChhhHHHHHHHHHHHHHhhhhhhH
Confidence            345556666666666666555433

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.73  E-value=1  Score=47.60  Aligned_cols=108  Identities=13%  Similarity=0.160  Sum_probs=50.6

Q ss_pred             HHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhH
Q 006828          145 SEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDI  224 (629)
Q Consensus       145 eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i  224 (629)
                      .++..+...+............+.+....++.....+-..+.........++-.......++..++..+..++..+....
T Consensus        81 ~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr  160 (499)
T COG4372          81 PQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR  160 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333344444444444444444455555555555555555555555555555555555555554444


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 006828          225 EAFKKEKGLLGKRLVGLEKETDDLKLKI  252 (629)
Q Consensus       225 ~~l~~~~~~l~~el~el~~ei~~l~~~i  252 (629)
                      ..+..+...+..+-..|..-...++...
T Consensus       161 ~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~  188 (499)
T COG4372         161 RQLEAQAQSLQASQKQLQASATQLKSQV  188 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444443333333333

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.70  E-value=0.88  Score=46.37  Aligned_cols=61  Identities=20%  Similarity=0.257  Sum_probs=28.8

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHH
Q 006828          231 KGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQ  291 (629)
Q Consensus       231 ~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~  291 (629)
                      +......+..+......++.+|+.+...+.++...+...+.++...+.++..++.+|..+.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~   93 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELK   93 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333444555555555555555555555555554444444444444444444444333333

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed

Probab=96.63  E-value=1.2  Score=47.02  Aligned_cols=60  Identities=13%  Similarity=0.210  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH
Q 006828          405 SCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE  464 (629)
Q Consensus       405 ~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~  464 (629)
                      .+..+...-..+..+|+-|...|......+.....-+...+.++..+...|..|...|..
T Consensus       203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~  262 (309)
T PF09728_consen  203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQT  262 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444555555555555443211111122344444444444444444444433

It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=96.52  E-value=1.2  Score=45.77  Aligned_cols=17  Identities=18%  Similarity=0.393  Sum_probs=8.9

Q ss_pred             HHHHHHHHHHHHHHHHH
Q 006828          408 DQQDKSKQLVNELADYK  424 (629)
Q Consensus       408 ~le~ei~~l~~~l~~y~  424 (629)
                      .+-.+..++..++..|+
T Consensus       282 eL~ne~n~LkEr~~qyE  298 (305)
T PF14915_consen  282 ELINECNHLKERLYQYE  298 (305)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            34455555555555554

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.49  E-value=2.3  Score=48.51  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          442 DEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE  498 (629)
Q Consensus       442 ~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~  498 (629)
                      +.++.-+..+..-..++...+...-.++...+.+.+.+..+..||..++.+....+.
T Consensus       436 eqlk~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~  492 (716)
T KOG4593|consen  436 EQLKGLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLL  492 (716)
T ss_pred             HHHHHHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444555666667777777888888888888888876665443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=96.44  E-value=0.95  Score=43.63  Aligned_cols=32  Identities=13%  Similarity=0.107  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 006828          189 LIEMEGKERNLRSEILVLQSDYGRLKKEKNER  220 (629)
Q Consensus       189 l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l  220 (629)
                      +..+...+..++.++.+...++..+...+...
T Consensus         6 va~lnrri~~leeele~aqErl~~a~~KL~Ea   37 (205)
T KOG1003|consen    6 VAALNRRIQLLEEELDRAQERLATALQKLEEA   37 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555444444333

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.43  E-value=2.4  Score=48.26  Aligned_cols=109  Identities=17%  Similarity=0.148  Sum_probs=59.3

Q ss_pred             cHHHHHhhhhhhHHHhhHhHHHHHHh----HHHHHHHHHHHHHH------------------HhhhhhhhhHHHhhhhhc
Q 006828           44 PSEQIKRLKSLNDLLVHRSHEQRQQV----ESLSQAKAALEAEL------------------SLFGVEKSELLAELSGES  101 (629)
Q Consensus        44 ~~~~~~~l~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~l------------------~~~~~~~~~l~~~~~~~~  101 (629)
                      .+..+++.-++++.=.++..+|-+--    -.++.|=++.+..|                  ...+.|+..=-+++..++
T Consensus        81 ~el~~~k~~~i~~r~~~~~~dr~~~~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr  160 (716)
T KOG4593|consen   81 AELELTKAQSILARNYEAEVDRKHKLLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLR  160 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677888888888888888876542    22222222222222                  123444444455555555


Q ss_pred             cchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHH
Q 006828          102 DQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMG  152 (629)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~  152 (629)
                      ...=+--...-|-+-.++-+....-..++.+.+.=++.+..+..+...+..
T Consensus       161 ~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~~~~ql~~~~q~~~~  211 (716)
T KOG4593|consen  161 NKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDRQHKQLQEENQKIQE  211 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555566666666666655555665554444444444444443333

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=96.41  E-value=3.8  Score=50.25  Aligned_cols=26  Identities=15%  Similarity=0.149  Sum_probs=18.5

Q ss_pred             HHHHhhhhhhHHHhhHhHHHHHHhHHHHH
Q 006828           46 EQIKRLKSLNDLLVHRSHEQRQQVESLSQ   74 (629)
Q Consensus        46 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~   74 (629)
                      ..-..+|++++.+++-.   .+...+|..
T Consensus       104 ~~~~~~ktles~~~~~~---~g~k~tlS~  129 (1294)
T KOG0962|consen  104 RTKMEFKTLESVIWAIN---DGDRVTLSG  129 (1294)
T ss_pred             HHHHHHHHHhhhheeee---cCccccccc
Confidence            34567899999999988   555555544

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.31  E-value=1.5  Score=44.66  Aligned_cols=62  Identities=16%  Similarity=0.318  Sum_probs=29.0

Q ss_pred             hhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006828          133 KNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEG  194 (629)
Q Consensus       133 ~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~  194 (629)
                      +.....++..+.....++...+..+-..+..+....+....+++....++..+...|..++.
T Consensus        33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~   94 (265)
T COG3883          33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKE   94 (265)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555444444444444444444444444444444444443333

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=96.11  E-value=2.4  Score=44.95  Aligned_cols=104  Identities=14%  Similarity=0.222  Sum_probs=45.9

Q ss_pred             HHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHH
Q 006828          146 EVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIE  225 (629)
Q Consensus       146 ela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~  225 (629)
                      +++++...+..++..+.....++.....+....+.++.....+-..++.....+...+.+....+..+......+...+.
T Consensus        75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~  154 (499)
T COG4372          75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLK  154 (499)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555555555555555555544444444444444444444444444444444444443333333333333333333


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHH
Q 006828          226 AFKKEKGLLGKRLVGLEKETDDLK  249 (629)
Q Consensus       226 ~l~~~~~~l~~el~el~~ei~~l~  249 (629)
                      .+-.++..+..+...+.+.-..|+
T Consensus       155 ~l~~qr~ql~aq~qsl~a~~k~LQ  178 (499)
T COG4372         155 TLAEQRRQLEAQAQSLQASQKQLQ  178 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

>PF13514 AAA_27: AAA domain

Probab=95.92  E-value=6.9  Score=48.74  Aligned_cols=96  Identities=18%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828          441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES  520 (629)
Q Consensus       441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~  520 (629)
                      ...+...+..+...|...|....     +..+...++-  ...+.|...+..+..+++.+...+..+...+..++..|..
T Consensus       856 ~~~l~~~~~~~~~~l~~~~~~~~-----~~~l~~e~~~--~d~~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~  928 (1111)
T PF13514_consen  856 RRELREELEDLERQLERQADGLD-----LEELEEELEE--LDPDELEAELEELEEELEELEEELEELQEERAELEQELEA  928 (1111)
T ss_pred             HHHHHHHHHHHHHHHHhhcCccc-----HHHHHHHhhc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666655554432     1222222211  1234455555555555555666666666677777777777


Q ss_pred             hccc-----hHHHHHHHHHHHHHHhhhh
Q 006828          521 IGFN-----SDRALSMLKNTAAMVCQSE  543 (629)
Q Consensus       521 lg~v-----aiee~~~~ker~~fl~~q~  543 (629)
                      |+..     +..++..+..+..-+...+
T Consensus       929 l~~~~~~a~l~~e~e~~~a~l~~~~~~~  956 (1111)
T PF13514_consen  929 LEGDDDAAELEQEREEAEAELEELAEEW  956 (1111)
T ss_pred             HhCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            7664     3335555555544444333

>PRK15374 pathogenicity island 1 effector protein SipB; Provisional

Probab=95.80  E-value=4.1  Score=45.26  Aligned_cols=187  Identities=14%  Similarity=0.101  Sum_probs=91.7

Q ss_pred             HHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006828          425 SALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNL  504 (629)
Q Consensus       425 ~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l  504 (629)
                      ..++.....++.....++.+...+..|..+.+.++|+-|.    |.+.+..+.-....-..-...+...   +...-+..
T Consensus       141 d~l~q~~~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~----l~~a~~av~~a~~~a~~a~~~~~~~---v~a~~~a~  213 (593)
T PRK15374        141 DLYEASIKKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPG----YAQAEAAVEQAGKEATEAKEALDKA---TDATVKAG  213 (593)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChh----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh
Confidence            3333333334444567889999999999999999999999    5555554444333322222222222   22221111


Q ss_pred             HHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHcc--
Q 006828          505 LEAKRNADDLRAKMESIGFN--SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFR--  578 (629)
Q Consensus       505 ~~~~k~i~~Lk~~I~~lg~v--aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~--  578 (629)
                      ...   ....+..|..|+|.  ++-    .-.-..+ ..+..+ +.+-..|. ++..+.+-|.+.=.+.|..-..-|.  
T Consensus       214 ~~a---~~ka~~~i~slt~~Q~~~~----~~~~i~~-~~~~~~~l~~~a~LT~LmA~l~eLi~~~s~e~lk~~~el~~kl  285 (593)
T PRK15374        214 TDA---KAKAEKADNILTKFQGTAN----AASQNQV-SQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQNDLALFNAL  285 (593)
T ss_pred             hhH---HHHHHHHHhhccHHhhhhh----hhhHHHH-HHhhhhhhhhHHHHHHHHHHHHHHHhhhhHhHHHhHHHHHHHH
Confidence            111   11444557888876  221    0011112 233344 66777777 7777666665544444443333333  


Q ss_pred             --ch-hHhHHHHHHHHHHHhhhHHhhcc--------cchhhhHhhHHHH-HHHHHHHHHh
Q 006828          579 --NR-EKLVEDMKHRVELMQNSVEAQKK--------KSFWTVVSSATTI-FAAASVAYIA  626 (629)
Q Consensus       579 --~~-~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~  626 (629)
                        .+ ..+-+.-+.--+..+++-|++|.        +.+.|.||.+.++ ...||+|.||
T Consensus       286 sea~~kd~ekKA~Eyee~vrKAEE~qK~mgCvgKIlG~vitaVsvvAAvfTGGASLAlAa  345 (593)
T PRK15374        286 QEGRQAEMEKKSAEFQEETRKAEETNRIMGCIGKVLGALLTIVSVVAAVFTGGASLALAA  345 (593)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence              22 22222222223334444455552        4444555544432 2334666654

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.73  E-value=3.5  Score=43.85  Aligned_cols=100  Identities=18%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828          441 LDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES  520 (629)
Q Consensus       441 l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~  520 (629)
                      ...+..++..|+....+++.+..   +++..++.++..+..+.......+..++.++..+...+..+..++..+..+|..
T Consensus       186 ~~~L~~e~~~Lk~~~~e~~~~D~---~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e  262 (325)
T PF08317_consen  186 KAELEEELENLKQLVEEIESCDQ---EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAE  262 (325)
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666666666666666665   455555555555555555555555555555555555555555555555555555


Q ss_pred             hcc-------chHHHHHHHHHHHHHHhhhh
Q 006828          521 IGF-------NSDRALSMLKNTAAMVCQSE  543 (629)
Q Consensus       521 lg~-------vaiee~~~~ker~~fl~~q~  543 (629)
                      +..       .+..+...++.+|++|+...
T Consensus       263 ~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~  292 (325)
T PF08317_consen  263 AEKIREECRGWTRSEVKRLKAKVDALEKLT  292 (325)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            554       38889999999999998764

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=95.68  E-value=6  Score=46.18  Aligned_cols=90  Identities=19%  Similarity=0.226  Sum_probs=60.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHhhhhhhHhhhhHhHHHHhhhhhHH--H
Q 006828          494 AEEKELMQKNLLEAKRNADDLRAKMESIGFN-------SDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGET--D  564 (629)
Q Consensus       494 ~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-------aiee~~~~ker~~fl~~q~~D~~ak~~l~~i~~~~~~m~--~  564 (629)
                      ..+++.+...+-.++.-+.-.+.+|..|-+|       |.=.+.-+|..|+==..-..+        +|.++..+.+  +
T Consensus       582 d~d~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~e--------tm~kLRnELK~LK  653 (717)
T PF09730_consen  582 DKDKEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSE--------TMMKLRNELKALK  653 (717)
T ss_pred             cccHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--------HHHHHHHHHHHHH
Confidence            3456677777777888888888888888888       555788888888643333332        3444433322  1


Q ss_pred             HHHHHHHHHHHHccch----hHhHHHHHHHH
Q 006828          565 QYAAEFQAIVNAFRNR----EKLVEDMKHRV  591 (629)
Q Consensus       565 ~f~~~f~~i~~~F~~~----~~~~~~~~~~~  591 (629)
                      .=+.+|..++.-|..|    -+-+|+|.+|+
T Consensus       654 EDAATFsSlRamFa~RCdEYvtQldemqrqL  684 (717)
T PF09730_consen  654 EDAATFSSLRAMFAARCDEYVTQLDEMQRQL  684 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2268999999999966    35677777765

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=95.64  E-value=6.2  Score=46.11  Aligned_cols=77  Identities=18%  Similarity=0.176  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006828          140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKN  218 (629)
Q Consensus       140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~  218 (629)
                      +......+-|+.. +..+...+..+...... ......+...+..++..+..+......+..++..+..+++.+...+.
T Consensus       171 l~~Ai~~LlGl~~-~~~L~~dl~~~~~~~~~-~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~  247 (650)
T TIGR03185       171 LKEAIEVLLGLDL-IDRLAGDLTNVLRRRKK-SELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE  247 (650)
T ss_pred             HHHHHHHHhCcHH-HHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666 55666666555443321 11223333344444444444444444444444444443333333333

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=95.57  E-value=2.1  Score=48.26  Aligned_cols=55  Identities=11%  Similarity=0.117  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhhhhh
Q 006828          489 HIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSEN  544 (629)
Q Consensus       489 ~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~vaiee~~~~ker~~fl~~q~~  544 (629)
                      .+..++.++..+...+..+.+.+..++..+..++. ..-+|..+...++.....++
T Consensus       318 ~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~-~~~el~~L~Re~~~~~~~Y~  372 (498)
T TIGR03007       318 ELAEAEAEIASLEARVAELTARIERLESLLRTIPE-VEAELTQLNRDYEVNKSNYE  372 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH-HHHHHHHHHHHHHHHHHHHH
Confidence            33333333344444444444444455555544443 22245555555544444444

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=95.29  E-value=4.2  Score=41.94  Aligned_cols=157  Identities=15%  Similarity=0.184  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHh
Q 006828          301 ILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVC  380 (629)
Q Consensus       301 i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~  380 (629)
                      -..|..++..++.....+..++......+.+..--++.....+......+.++..-...-+..+..+......+++.+..
T Consensus       146 ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~Q  225 (305)
T PF14915_consen  146 NEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQ  225 (305)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            44444445555555555555554444444443333444444444434444444433333344444444444444444444


Q ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhh
Q 006828          381 QDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEK  460 (629)
Q Consensus       381 ~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~  460 (629)
                      +..+--=|+.++......-...+.-+.+++..+..+...+.                           ..-..+.--|+.
T Consensus       226 lqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~---------------------------ae~ekq~lllEE  278 (305)
T PF14915_consen  226 LQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQ---------------------------AESEKQVLLLEE  278 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------------------------HHHHHHHHHHHH
Confidence            44444444444444333322222222222222222111111                           111222333566


Q ss_pred             chHHhHHHHHHHHHHHHHHHHHHH
Q 006828          461 RFEEKVEELAKTRNERETLVDLRK  484 (629)
Q Consensus       461 vN~~AIeEyeevkeRyefL~~Q~~  484 (629)
                      -|-..+.+|.-+++|.--+...+.
T Consensus       279 rNKeL~ne~n~LkEr~~qyEkEKa  302 (305)
T PF14915_consen  279 RNKELINECNHLKERLYQYEKEKA  302 (305)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhh
Confidence            777888888888888776665544

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=95.21  E-value=2.6  Score=50.07  Aligned_cols=58  Identities=12%  Similarity=0.154  Sum_probs=33.7

Q ss_pred             hhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006828          104 KVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREK  168 (629)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~  168 (629)
                      ..++.|-+.+...|+..+......       .-..-+.-|..++..+...+...+.++...+...
T Consensus       167 ~~Aa~iaN~la~~Y~~~~~~~k~~-------~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~  224 (754)
T TIGR01005       167 KLAAAIPDAIAAAYIAGQGAAKSE-------SNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQS  224 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            345555568888886654443332       2223345566666666666666666666666543

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]

Probab=95.14  E-value=6.8  Score=43.53  Aligned_cols=71  Identities=13%  Similarity=-0.020  Sum_probs=41.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHH
Q 006828          463 EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN--SDRALSMLKNTA  536 (629)
Q Consensus       463 ~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v--aiee~~~~ker~  536 (629)
                      ||..+.|-.   .+.....+..||..+++.....+..+...+..+...+..+...-..+-..  -++..-.-.+||
T Consensus       439 PGlPe~~l~---l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t~e~ve~a~LaE~lIQY~NRY  511 (570)
T COG4477         439 PGLPETFLS---LFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDETEEVVENAVLAEQLIQYGNRY  511 (570)
T ss_pred             CCCcHHHHH---HHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666653   35556667777777777777766666666666666665555554444332  333344444555

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=95.00  E-value=8.1  Score=43.68  Aligned_cols=50  Identities=10%  Similarity=0.048  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          449 MDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKE  498 (629)
Q Consensus       449 ~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~  498 (629)
                      +.|..+...|..-|.+.-.+..+...+-+++..+-.....-+..|...+.
T Consensus       386 r~lq~e~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~klE~dl~  435 (629)
T KOG0963|consen  386 RKLQNENASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKLEQDLL  435 (629)
T ss_pred             hhhhHHHHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHHHhhHh
Confidence            34444455555555555555555555555555444444444444444433

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=94.90  E-value=4.6  Score=45.48  Aligned_cols=52  Identities=12%  Similarity=0.220  Sum_probs=26.8

Q ss_pred             hhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Q 006828          109 IEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACRE  167 (629)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~  167 (629)
                      +-+.|...|+.......+...       ..-+.-|..++..+...+...+..+.....+
T Consensus       139 i~n~l~~~yi~~~~~~~~~~~-------~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~  190 (498)
T TIGR03007       139 VVQTLLTIFVEETLGSKRQDS-------DSAQRFIDEQIKTYEKKLEAAENRLKAFKQE  190 (498)
T ss_pred             HHHHHHHHHHHhhcccchhhh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334666667555432222211       1234455556666666666666666665543

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=94.86  E-value=6.1  Score=41.56  Aligned_cols=38  Identities=29%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          392 IGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQ  429 (629)
Q Consensus       392 l~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~  429 (629)
                      ++.+--+..-+...+..++.+..-+...+..|...++.
T Consensus       191 IDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~  228 (319)
T PF09789_consen  191 IDALIMENRYLKERLKQLQEEKELLKQTINKYKSALER  228 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33444444445555555666666666666667766653

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=94.79  E-value=4.7  Score=39.88  Aligned_cols=39  Identities=23%  Similarity=0.211  Sum_probs=16.0

Q ss_pred             hhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          266 NSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILEL  304 (629)
Q Consensus       266 ~e~l~~el~ele~ela~l~e~l~~l~~~~~~l~~~i~~l  304 (629)
                      +..+...+..+...+..+...+..+...-..+..-+..+
T Consensus        85 L~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey  123 (207)
T PF05010_consen   85 LNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEY  123 (207)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            333333344444444444444444444433333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PRK11281 hypothetical protein; Provisional

Probab=94.66  E-value=15  Score=45.28  Aligned_cols=55  Identities=11%  Similarity=0.133  Sum_probs=27.4

Q ss_pred             HHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006828          142 ALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE  196 (629)
Q Consensus       142 ~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~  196 (629)
                      .|...+..+...+...+..+..........+..-+..+..+......+.++..++
T Consensus       125 qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L  179 (1113)
T PRK11281        125 QLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLL  179 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555444444444445555555555554433

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=94.64  E-value=12  Score=44.10  Aligned_cols=270  Identities=14%  Similarity=0.085  Sum_probs=0.0

Q ss_pred             hhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 006828          133 KNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGR  212 (629)
Q Consensus       133 ~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~  212 (629)
                      +............++.++...+..+...|.++-.....+......+...+..+...+..+-.....+..    +......
T Consensus       490 L~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqD----v~s~~sE  565 (769)
T PF05911_consen  490 LVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQD----VSSMRSE  565 (769)
T ss_pred             HHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHH----HHHHHHH


Q ss_pred             HHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006828          213 LKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQK  292 (629)
Q Consensus       213 L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~  292 (629)
                      +..........-................+..+++.+......+...+......++..+.++.+.+..+..++.++.....
T Consensus       566 IK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~ke  645 (769)
T PF05911_consen  566 IKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKE  645 (769)
T ss_pred             HHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 006828          293 EEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKN  372 (629)
Q Consensus       293 ~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~  372 (629)
                      ....+...+.-.......+..+...+..++..+...       +..|..++..-...-.++.....+++..+........
T Consensus       646 S~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K-------i~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~  718 (769)
T PF05911_consen  646 SNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK-------ISSLEEELEKERALSEELEAKCRELEEELERMKKEES  718 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccc


Q ss_pred             HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          373 DIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQL  416 (629)
Q Consensus       373 ~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l  416 (629)
                      .....   ....-..-..+|...-..+..++..+..|-.++..+
T Consensus       719 ~~~~~---~~~~k~kqe~EiaaAA~KLAECQeTI~sLGkQLksL  759 (769)
T PF05911_consen  719 LQQLA---NEDKKIKQEKEIAAAAEKLAECQETIASLGKQLKSL  759 (769)
T ss_pred             hhhcc---ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc

The function of this family is unknown.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=94.59  E-value=5.9  Score=40.23  Aligned_cols=37  Identities=14%  Similarity=0.158  Sum_probs=29.0

Q ss_pred             hchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          460 KRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE  496 (629)
Q Consensus       460 ~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e  496 (629)
                      |...-.-.-|+++++.|..=...+..|+..+..|...
T Consensus       155 p~q~~~~sk~e~L~ekynkeveerkrle~e~k~lq~k  191 (307)
T PF10481_consen  155 PSQYYSDSKYEELQEKYNKEVEERKRLEAEVKALQAK  191 (307)
T ss_pred             hhhhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence            3444566789999999999888888888888877753

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=9.6  Score=42.34  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc-------hHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHH-
Q 006828          493 LAEEKELMQKNLLEAKRNADDLRAKMESIGFN-------SDRALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGET-  563 (629)
Q Consensus       493 L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v-------aiee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~-  563 (629)
                      .....+.+...+-.++.-+.-.+.+|..|-+|       |.=....+++.|+-=         |.-+. ++.+|..+.+ 
T Consensus       596 ~dk~~e~l~~~ilklksllstkreqi~tlrtvlkankqtaevaltnlksKYEnE---------K~mvtetm~KlRnELk~  666 (772)
T KOG0999|consen  596 ADKDKEALMEQILKLKSLLSTKREQITTLRTVLKANKQTAEVALTNLKSKYENE---------KAMVTETMDKLRNELKA  666 (772)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHhhhhhH---------HHHHHHHHHHHHHHHHH
Confidence            33445555666666666666667777777777       333555566666422         22223 4555554443 


Q ss_pred             -HHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhHHhhc--ccchhhhHh
Q 006828          564 -DQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQK--KKSFWTVVS  611 (629)
Q Consensus       564 -~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  611 (629)
                       ..=..+|..+...|..|=   |....|++-|+.-..|.-  |+.+-++++
T Consensus       667 Lkedaatfsslramf~~R~---ee~~tq~de~~~ql~aaedekKtln~llr  714 (772)
T KOG0999|consen  667 LKEDAATFSSLRAMFAARC---EEYVTQLDELQRQLAAAEDEKKTLNQLLR  714 (772)
T ss_pred             HHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence             233678999999999764   344555555555552221  445555544

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.29  E-value=8  Score=40.40  Aligned_cols=22  Identities=9%  Similarity=0.258  Sum_probs=9.2

Q ss_pred             hHHHHHHHHHHHHhHHHhHHHH
Q 006828          136 RENEIIALKSEVSGLMGNIENE  157 (629)
Q Consensus       136 Rk~Ei~~L~eela~l~~~~~~~  157 (629)
                      |...+...-.++..+..-++.+
T Consensus        53 rv~qmtkty~Didavt~lLeEk   74 (306)
T PF04849_consen   53 RVSQMTKTYNDIDAVTRLLEEK   74 (306)
T ss_pred             chhhhhcchhhHHHHHHHHHHH
Confidence            3333334444444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.20  E-value=0.8  Score=44.90  Aligned_cols=68  Identities=24%  Similarity=0.306  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          357 LDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYK  424 (629)
Q Consensus       357 l~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~  424 (629)
                      +..+...+..+......+...+......+..++.++..+.-.+..++.++.+++.+...+..++..+.
T Consensus       118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k  185 (194)
T PF08614_consen  118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK  185 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444555555556666666666666677777777777888888877776444

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK11281 hypothetical protein; Provisional

Probab=94.12  E-value=20  Score=44.34  Aligned_cols=48  Identities=2%  Similarity=-0.013  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhH
Q 006828          227 FKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVIND  274 (629)
Q Consensus       227 l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~  274 (629)
                      +...+......++..+..+...+..+......-+..+..+.....++.
T Consensus       126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~Rlq  173 (1113)
T PRK11281        126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQ  173 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            333333333344444444444444333333333333333333333333

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins

Probab=94.02  E-value=14  Score=42.36  Aligned_cols=64  Identities=22%  Similarity=0.205  Sum_probs=32.3

Q ss_pred             hhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 006828          131 EEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEG  194 (629)
Q Consensus       131 ~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~  194 (629)
                      .+|+..-.|++.|..++..+...-..-+-.|..--.+++.+...-...+.+...+...+...+.
T Consensus        66 elis~qlqE~rrle~e~~~lre~sl~qkmrLe~qa~Ele~l~~ae~agraEae~Lraala~ae~  129 (739)
T PF07111_consen   66 ELISRQLQELRRLEEEVRALRETSLQQKMRLEAQAEELEALARAEKAGRAEAEELRAALAGAEV  129 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHH
Confidence            6677777889999998877665432222233322233333322223333444444444444333

The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=93.91  E-value=13  Score=44.40  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHH-hhhchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          441 LDEQRKSGMDLRLKLSE-MEKRFEEKVEELAKTRNERETLVDLRKKMESH  489 (629)
Q Consensus       441 l~~~k~~i~~Lk~eI~~-LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~  489 (629)
                      +-.++.++..++..|.. +..+....-.+|.....+..-|..+..++..+
T Consensus       318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~  367 (754)
T TIGR01005       318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAA  367 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555433 33333333445555555555555555555333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=93.88  E-value=22  Score=43.94  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=15.3

Q ss_pred             HHHHHHHHhhhhhhhhHHHhhhhhc
Q 006828           77 AALEAELSLFGVEKSELLAELSGES  101 (629)
Q Consensus        77 ~~~~~~l~~~~~~~~~l~~~~~~~~  101 (629)
                      +.+...+..+-.++..+++++....
T Consensus        68 ~~~~~~i~~ap~~~~~~~~~l~~~~   92 (1109)
T PRK10929         68 KQYQQVIDNFPKLSAELRQQLNNER   92 (1109)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            3333447777777777777776533

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=93.73  E-value=10  Score=39.64  Aligned_cols=10  Identities=10%  Similarity=-0.094  Sum_probs=4.5

Q ss_pred             HHHHHHHHHH
Q 006828          137 ENEIIALKSE  146 (629)
Q Consensus       137 k~Ei~~L~ee  146 (629)
                      +..+......
T Consensus        37 ~~~~~~~l~y   46 (306)
T PF04849_consen   37 PEQIEETLRY   46 (306)
T ss_pred             HHHHHHHHHH
Confidence            3444444444

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules

Probab=93.47  E-value=8.7  Score=38.02  Aligned_cols=24  Identities=8%  Similarity=0.098  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          393 GELRDVVFKLKASCRDQQDKSKQL  416 (629)
Q Consensus       393 ~~l~~~l~~le~~~~~le~ei~~l  416 (629)
                      ..+...+.+...+...|-..++.+
T Consensus       178 ~SLe~~LeQK~kEn~ELtkICDeL  201 (207)
T PF05010_consen  178 QSLEESLEQKTKENEELTKICDEL  201 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=93.35  E-value=7.9  Score=37.23  Aligned_cols=121  Identities=22%  Similarity=0.269  Sum_probs=60.7

Q ss_pred             hHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHH
Q 006828          372 NDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDL  451 (629)
Q Consensus       372 ~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~L  451 (629)
                      ..+.+.+.....++..+..........+.....++.-+..++..+...+......+..+...........+.++.....|
T Consensus        52 ~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l  131 (177)
T PF13870_consen   52 QQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKL  131 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444444444444444444444444434333333322222112223333333333


Q ss_pred             HHHHHHhhh-chHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          452 RLKLSEMEK-RFEEKVEELAKTRNERETLVDLRKKMESHIGLLAE  495 (629)
Q Consensus       452 k~eI~~LG~-vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~  495 (629)
                      +.   ..|. .+|.....|....+.++.+......|...+..+..
T Consensus       132 ~~---~~~~~~~P~ll~Dy~~~~~~~~~l~~~i~~l~rk~~~l~~  173 (177)
T PF13870_consen  132 RQ---QGGLLGVPALLRDYDKTKEEVEELRKEIKELERKVEILEM  173 (177)
T ss_pred             HH---hcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32   2333 34777778998888888887777777777766654

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=93.27  E-value=15  Score=40.16  Aligned_cols=10  Identities=20%  Similarity=0.285  Sum_probs=3.5

Q ss_pred             hHHHHHHHHH
Q 006828          240 GLEKETDDLK  249 (629)
Q Consensus       240 el~~ei~~l~  249 (629)
                      .+.+-...++
T Consensus       313 k~~~~~~~mk  322 (622)
T COG5185         313 KYENYVNAMK  322 (622)
T ss_pred             HHHHHHHHHH
Confidence            3333333333

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=93.17  E-value=33  Score=43.78  Aligned_cols=235  Identities=12%  Similarity=0.117  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH--HHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006828          179 VKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNER--DGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIV  256 (629)
Q Consensus       179 ~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l--~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~  256 (629)
                      ...+..+...|.++...+..+..++..+..+...|..+...+  ...+.............+......+...........
T Consensus       741 ~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~  820 (1353)
T TIGR02680       741 LRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAA  820 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHhhhhHHHHh---------hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          257 KEKNAIEMQNSEQKVI---------NDELEKEVNKLNEIVLALQKEEKVLC---GKILELENSCSEAMDEKLEMVLEIKA  324 (629)
Q Consensus       257 ~el~ele~~~e~l~~e---------l~ele~ela~l~e~l~~l~~~~~~l~---~~i~~le~~l~~~~~~~~~l~~ei~~  324 (629)
                      .........+...-..         +......+..+...+..+......+.   ..+.....++..+.........+...
T Consensus       821 ~~~~~a~~~l~~aaa~l~L~a~~~~l~~~~~aL~~y~~~l~~l~~~~~~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~  900 (1353)
T TIGR02680       821 AAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDHLHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAE  900 (1353)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 006828          325 LLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKA  404 (629)
Q Consensus       325 l~~e~~e~~~~l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~  404 (629)
                      +..++......+..+...+...   +.++..++......+..+..++..+..........+..+...+......+.....
T Consensus       901 ~~~e~~~a~~~l~~l~e~l~~~---~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~~~a~~~~~~~~~  977 (1353)
T TIGR02680       901 ARAEAEEASLRLRTLEESVGAM---VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKRAEADATLDERAE  977 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH


Q ss_pred             HHHHHHHHHHHH
Q 006828          405 SCRDQQDKSKQL  416 (629)
Q Consensus       405 ~~~~le~ei~~l  416 (629)
                      .-.-...-...+
T Consensus       978 ~~~~~~~~~~e~  989 (1353)
T TIGR02680       978 ARDHAIGQLREF  989 (1353)
T ss_pred             HHHHHHHHHHHH

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=93.17  E-value=12  Score=38.95  Aligned_cols=173  Identities=20%  Similarity=0.233  Sum_probs=86.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccchhhhhhhhhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHH
Q 006828           65 QRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALK  144 (629)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~  144 (629)
                      -+.-|+||.+--..|-.+|...-.....|..++.+++...|.+-...-.---|+=                     ..|.
T Consensus        25 l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~is---------------------N~Ll   83 (310)
T PF09755_consen   25 LRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFIS---------------------NTLL   83 (310)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHH
Confidence            3445677777777777778777788888999999999888766443211111211                     1344


Q ss_pred             HHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhHHHh
Q 006828          145 SEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERN-LRSEILVLQSDYGRLKKEKNERDGD  223 (629)
Q Consensus       145 eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~-le~q~~~l~~e~~~L~~E~~~l~~~  223 (629)
                      ..+.++.+.+..+-..   +..+-.-+.   ..+...+..+.....+++..+.. -+..+.++...+..+..+.......
T Consensus        84 Kkl~~l~keKe~L~~~---~e~EEE~lt---n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~  157 (310)
T PF09755_consen   84 KKLQQLKKEKETLALK---YEQEEEFLT---NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEE  157 (310)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4444444433333222   222222221   23344666666666666665543 3344555555555555544444444


Q ss_pred             HHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHh
Q 006828          224 IEAFKKEKGLLGKRLVG-LEKETDDLKLKIKVIVKEKNAIEM  264 (629)
Q Consensus       224 i~~l~~~~~~l~~el~e-l~~ei~~l~~~ie~l~~el~ele~  264 (629)
                      +..+..++.+++..+.. -+.-++.|...+..+..+...++.
T Consensus       158 le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~  199 (310)
T PF09755_consen  158 LERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQE  199 (310)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444444333321 112233344444444444443333

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=93.16  E-value=14  Score=39.38  Aligned_cols=6  Identities=0%  Similarity=0.395  Sum_probs=2.3

Q ss_pred             hhHHHH
Q 006828          112 GLFCVF  117 (629)
Q Consensus       112 ~~~~~~  117 (629)
                      |.+-+|
T Consensus        68 P~Lely   73 (325)
T PF08317_consen   68 PMLELY   73 (325)
T ss_pred             hHHHHH
Confidence            333333

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function

Probab=93.01  E-value=14  Score=39.01  Aligned_cols=19  Identities=26%  Similarity=0.436  Sum_probs=7.7

Q ss_pred             HHHHHHhHHHHHHHHHHHH
Q 006828          336 IERLIEEKDEISHRLEKAV  354 (629)
Q Consensus       336 l~~l~~e~~~le~~i~el~  354 (629)
                      +..+.++...+...+....
T Consensus       205 l~q~qeE~~l~k~~i~KYK  223 (319)
T PF09789_consen  205 LKQLQEEKELLKQTINKYK  223 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444444444433333333

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.79  E-value=7.6  Score=35.51  Aligned_cols=15  Identities=20%  Similarity=0.357  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHHH
Q 006828          301 ILELENSCSEAMDEK  315 (629)
Q Consensus       301 i~~le~~l~~~~~~~  315 (629)
                      +..+..++.++..+.
T Consensus       107 ~~~~~~r~~dL~~QN  121 (132)
T PF07926_consen  107 LSELEQRIEDLNEQN  121 (132)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>smart00787 Spc7 Spc7 kinetochore protein

Probab=92.63  E-value=16  Score=38.68  Aligned_cols=99  Identities=12%  Similarity=0.132  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828          443 EQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG  522 (629)
Q Consensus       443 ~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg  522 (629)
                      .+..++..|+.....+..+.   .+++..+++.+.....+.......+..++.++..+...+.....+...+..+|.++-
T Consensus       183 ~L~~e~~~L~~~~~e~~~~d---~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae  259 (312)
T smart00787      183 ALEEELRQLKQLEDELEDCD---PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE  259 (312)
T ss_pred             HHHHHHHHHHHhHHHHHhCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444433   345555556666666666666666666666666666666666666666666666665


Q ss_pred             cc-------hHHHHHHHHHHHHHHhhhhh
Q 006828          523 FN-------SDRALSMLKNTAAMVCQSEN  544 (629)
Q Consensus       523 ~v-------aiee~~~~ker~~fl~~q~~  544 (629)
                      .+       +..|...++.+|+||..+..
T Consensus       260 ~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g  288 (312)
T smart00787      260 KKLEQCRGFTFKEIEKLKEQLKLLQSLTG  288 (312)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            54       88899999999999987643

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.42  E-value=20  Score=39.54  Aligned_cols=49  Identities=12%  Similarity=0.105  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          444 QRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEE  496 (629)
Q Consensus       444 ~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e  496 (629)
                      +...+..++..+..+..    ...+|..+...++.....+..|..++...+.+
T Consensus       323 l~~~l~~~~~~~~~l~~----~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~  371 (444)
T TIGR03017       323 LREALENQKAKVLELNR----QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE  371 (444)
T ss_pred             HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444443333    35678888889999999999988888877653

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=92.41  E-value=2.3  Score=41.64  Aligned_cols=56  Identities=29%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006828          237 RLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQK  292 (629)
Q Consensus       237 el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l~~l~~  292 (629)
                      .+..+...+..+...+..+...+.+....++.++.++..+...+..+++.+..+..
T Consensus       117 ~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~  172 (194)
T PF08614_consen  117 RLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE  172 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333444444444444444444444444444444444444443333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=92.17  E-value=25  Score=39.95  Aligned_cols=108  Identities=17%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchH------HhHHHHHHH-HHHHHHHHHH
Q 006828          410 QDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE------EKVEELAKT-RNERETLVDL  482 (629)
Q Consensus       410 e~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~------~AIeEyeev-keRyefL~~Q  482 (629)
                      -..+..+...+..+...++.+...... ..+.+++++++.-|+.-  ++|+ +.      +...-++.+ =++--+|..+
T Consensus       316 ~~qI~~le~~l~~~~~~leel~~kL~~-~sDYeeIK~ELsiLk~i--ef~~-se~a~~~~~~~~~leslLl~knr~lq~e  391 (629)
T KOG0963|consen  316 KAQISALEKELKAKISELEELKEKLNS-RSDYEEIKKELSILKAI--EFGD-SEEANDEDETAKTLESLLLEKNRKLQNE  391 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh-hccHHHHHHHHHHHHHh--hcCC-cccccccccccchHHHHHHHHHhhhhHH
Confidence            334444444444444444444433333 24566666666666542  1220 11      111112222 3444556666


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Q 006828          483 RKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESI  521 (629)
Q Consensus       483 ~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~l  521 (629)
                      ..-|......+.+++..+......+.......+.-|..+
T Consensus       392 ~a~Lr~~n~~~~~~~~~~~~~~~el~~~~~~~ke~i~kl  430 (629)
T KOG0963|consen  392 NASLRVANSGLSGRITELSKKGEELEAKATEQKELIAKL  430 (629)
T ss_pred             HHHHhccccccchhHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence            666666666666666666665555555555555554444

>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells

Probab=92.13  E-value=16  Score=37.58  Aligned_cols=31  Identities=6%  Similarity=0.189  Sum_probs=13.8

Q ss_pred             chHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          461 RFEEKVEELAKTRNERETLVDLRKKMESHIG  491 (629)
Q Consensus       461 vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~  491 (629)
                      .|..-..-++.+...+..+..+...+...+.
T Consensus       214 ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~  244 (264)
T PF06008_consen  214 LNRANQKNLEDLEKKKQELSEQQNEVSETLK  244 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333444444444444444444444444

Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex

>PRK10869 recombination and repair protein; Provisional

Probab=92.06  E-value=27  Score=40.06  Aligned_cols=132  Identities=12%  Similarity=0.059  Sum_probs=88.4

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----
Q 006828          440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVD---LRKKMESHIGLLAEEKELMQKNLLEAKRNA-----  511 (629)
Q Consensus       440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~---Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i-----  511 (629)
                      .++.+..++..|..-....|+-..+.++-+++.+.+++.+..   ....|..++..+..+.......+...++..     
T Consensus       297 ~l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~  376 (553)
T PRK10869        297 RLAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELA  376 (553)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            468889999999999999999888889988888888877655   467788888888888877777777665554     


Q ss_pred             HHHHHHHHhhccc------hHHH---H--HHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHH
Q 006828          512 DDLRAKMESIGFN------SDRA---L--SMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVN  575 (629)
Q Consensus       512 ~~Lk~~I~~lg~v------aiee---~--~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~  575 (629)
                      ..+...+..||.-      .+..   +  ..=-++.+|+-.-    +....+. +.+-+-.++..++.=++..+..
T Consensus       377 ~~v~~~L~~L~m~~a~f~v~~~~~~~~~~~~G~d~veF~~~~----n~g~~~~pL~k~lSgGe~~Ri~LA~~~~~~  448 (553)
T PRK10869        377 QLITESMHELSMPHGKFTIDVKFDPEHLSADGADRIEFRVTT----NPGQPLQPIAKVASGGELSRIALAIQVITA  448 (553)
T ss_pred             HHHHHHHHHcCCCCcEEEEEEecCCCCCCCCCceEEEEEEec----CCCCCcchhhhhCCHHHHHHHHHHHHHHhc
Confidence            4667777778872      2211   0  0000122332221    1233344 5555677778888777777653

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=92.02  E-value=9.6  Score=34.86  Aligned_cols=17  Identities=29%  Similarity=0.339  Sum_probs=6.5

Q ss_pred             HHHHHHHHhHHHhHHHH
Q 006828          141 IALKSEVSGLMGNIENE  157 (629)
Q Consensus       141 ~~L~eela~l~~~~~~~  157 (629)
                      ..|..++..+.......
T Consensus         6 ~~l~~e~~~~~~~~~~~   22 (132)
T PF07926_consen    6 SSLQSELQRLKEQEEDA   22 (132)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=91.96  E-value=14  Score=36.51  Aligned_cols=19  Identities=21%  Similarity=0.340  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHhhhhHHHHH
Q 006828          359 DKEGEIAKLLREKNDIEER  377 (629)
Q Consensus       359 ~l~~~leel~~e~~~l~e~  377 (629)
                      .+...+..+..++.+|...
T Consensus       111 vL~qr~~kle~ErdeL~~k  129 (201)
T PF13851_consen  111 VLEQRFEKLEQERDELYRK  129 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333

>TIGR00634 recN DNA repair protein RecN

Probab=91.80  E-value=29  Score=39.88  Aligned_cols=84  Identities=19%  Similarity=0.241  Sum_probs=56.0

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhchHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-----
Q 006828          440 DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVD---LRKKMESHIGLLAEEKELMQKNLLEAKRNA-----  511 (629)
Q Consensus       440 ~l~~~k~~i~~Lk~eI~~LG~vN~~AIeEyeevkeRyefL~~---Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i-----  511 (629)
                      .++.+..++..+..-....|+-....+..++.+..+++.+..   ....|..++..+..+...+...+...++..     
T Consensus       302 ~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~  381 (563)
T TIGR00634       302 RLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLA  381 (563)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466777888888888888887777777777777777766544   355666666666666666666665554444     


Q ss_pred             HHHHHHHHhhcc
Q 006828          512 DDLRAKMESIGF  523 (629)
Q Consensus       512 ~~Lk~~I~~lg~  523 (629)
                      ..+...+..||.
T Consensus       382 ~~v~~~l~~L~m  393 (563)
T TIGR00634       382 KRVEQELKALAM  393 (563)
T ss_pred             HHHHHHHHhCCC
Confidence            355566666665

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.76  E-value=26  Score=41.36  Aligned_cols=30  Identities=10%  Similarity=0.209  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHhhhchHHhHHHHHHHHHH
Q 006828          446 KSGMDLRLKLSEMEKRFEEKVEELAKTRNE  475 (629)
Q Consensus       446 ~~i~~Lk~eI~~LG~vN~~AIeEyeevkeR  475 (629)
                      .+.+.++.-+...|...-..|.+...++..
T Consensus       685 ~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~  714 (717)
T PF10168_consen  685 SQKRTIKEILKQQGEEIDELVKQIKNIKKI  714 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344445555555555555555555554443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=91.69  E-value=8.1  Score=41.60  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=17.3

Q ss_pred             hhcccCCCCCCcHHHHHhhhhhhHHHhhH
Q 006828           33 VALTHRNSMEDPSEQIKRLKSLNDLLVHR   61 (629)
Q Consensus        33 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~   61 (629)
                      -+|.+++    ++.-..-|-+|++.=|+-
T Consensus        92 ~kLk~G~----Ge~vc~VLd~Lad~AL~~  116 (359)
T PF10498_consen   92 SKLKQGS----GEHVCYVLDQLADEALKR  116 (359)
T ss_pred             HHhhCCC----CHHHHHHHHHHHHHHHHh
Confidence            3455666    777777787777776663

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>KOG1937 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.09  E-value=27  Score=38.15  Aligned_cols=24  Identities=13%  Similarity=0.266  Sum_probs=17.6

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHh
Q 006828          497 KELMQKNLLEAKRNADDLRAKMES  520 (629)
Q Consensus       497 ~~~l~~~l~~~~k~i~~Lk~~I~~  520 (629)
                      ++.+..++...++....|..+|..
T Consensus       497 lEkl~~Dyqairqen~~L~~~iR~  520 (521)
T KOG1937|consen  497 LEKLHQDYQAIRQENDQLFSEIRL  520 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445777888888888888877753

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.34  E-value=11  Score=37.88  Aligned_cols=7  Identities=14%  Similarity=0.116  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 006828          162 SQACREK  168 (629)
Q Consensus       162 ~~L~~~~  168 (629)
                      ..+..+.
T Consensus        35 ~e~~kE~   41 (230)
T PF10146_consen   35 EEYRKEM   41 (230)
T ss_pred             HHHHHHH
Confidence            3333333

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=90.28  E-value=37  Score=38.52  Aligned_cols=38  Identities=16%  Similarity=0.308  Sum_probs=21.9

Q ss_pred             HHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Q 006828          364 IAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFK  401 (629)
Q Consensus       364 leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~  401 (629)
                      ..++..++...+..+....+++..|++++.....+..+
T Consensus       219 v~e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~r  256 (861)
T KOG1899|consen  219 VGEVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMR  256 (861)
T ss_pred             HHHHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence            44555566666666666666666666666554444333

>TIGR00634 recN DNA repair protein RecN

Probab=90.20  E-value=40  Score=38.72  Aligned_cols=22  Identities=23%  Similarity=0.173  Sum_probs=14.4

Q ss_pred             hhhhhhhHHHHHHHHHHHHhHH
Q 006828          130 DEEKNERENEIIALKSEVSGLM  151 (629)
Q Consensus       130 d~~~~~Rk~Ei~~L~eela~l~  151 (629)
                      |...--.+.....+-+.++++.
T Consensus       136 ~~~~l~~~~~~~~lLD~~~~~~  157 (563)
T TIGR00634       136 DQQLLFRPDEQRQLLDTFAGAN  157 (563)
T ss_pred             HHHHhcCHHHHHHHHHHhcCch
Confidence            4455556777777777777753

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PF11657 Activator-TraM: Transcriptional activator TraM

Probab=90.17  E-value=9.3  Score=35.54  Aligned_cols=67  Identities=15%  Similarity=0.235  Sum_probs=42.1

Q ss_pred             HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhHHhhcccchhhhHhhHHHHHHHHHHHHHh
Q 006828          554 VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKKSFWTVVSSATTIFAAASVAYIA  626 (629)
Q Consensus       554 ~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  626 (629)
                      ........|.+.+.+.+..+...++.   .|+..-.++   .-.+.--++-.+|++++|+.++|||+-++++.
T Consensus        77 al~~ske~m~~~l~e~~~~~~~avk~---~i~~~~~~~---~~~~~~~r~~a~~nl~aa~~~~~aa~v~~~~~  143 (144)
T PF11657_consen   77 ALAASKEAMNKILQESAQEIVEAVKS---EIDNSLAEV---NDLVREARKAAILNLVAAVLVLLAACVALWVS  143 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444555666666666666665554   244443333   33443335678899999999999998777653

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=90.14  E-value=43  Score=39.01  Aligned_cols=61  Identities=20%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             cHHHHHhhhhhhHHHhhHhHHHHHHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccch
Q 006828           44 PSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQK  104 (629)
Q Consensus        44 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~  104 (629)
                      ...+..+|..+++-|..-...--.++-.+...=.+.++.....-...+++..++.-++.-.
T Consensus        53 L~~e~e~Lq~~~~~~~~~~~~~~~~~~el~~k~s~~~~~~~e~~~~le~~~~d~eki~~~~  113 (698)
T KOG0978|consen   53 LAEENEKLQNLADHLQEKHATLSEQISELLDKISTAETEVDELEQQLEDLQADLEKIRRRS  113 (698)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHH
Confidence            3455555666666665555555555555555544445555555555555555555554433

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=89.90  E-value=6.6  Score=41.52  Aligned_cols=16  Identities=6%  Similarity=0.005  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhHHHhHH
Q 006828          140 IIALKSEVSGLMGNIE  155 (629)
Q Consensus       140 i~~L~eela~l~~~~~  155 (629)
                      ++.+..+.+.+..++.
T Consensus        18 ~~~~~~E~~~Y~~fL~   33 (314)
T PF04111_consen   18 LEQAEKERDTYQEFLK   33 (314)
T ss_dssp             ----------------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333444444444433

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF13514 AAA_27: AAA domain

Probab=89.80  E-value=63  Score=40.41  Aligned_cols=37  Identities=24%  Similarity=0.235  Sum_probs=16.7

Q ss_pred             HHhHHHHHHHHHHHHHHHhhhhhhhhHHHhhhhhccc
Q 006828           67 QQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQ  103 (629)
Q Consensus        67 ~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~  103 (629)
                      .+|..|...+..|+..+.....+......++..+...
T Consensus       346 ~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~  382 (1111)
T PF13514_consen  346 ERIRELLQEREQLEQALAQARRELEEAERELEQLQAE  382 (1111)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444443

>PRK09343 prefoldin subunit beta; Provisional

Probab=89.74  E-value=14  Score=33.32  Aligned_cols=103  Identities=16%  Similarity=0.134  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH--h
Q 006828          388 LHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE--K  465 (629)
Q Consensus       388 l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~--A  465 (629)
                      +..++......+..++.++..+......+...+.....++..+...-+    +..           =-...|||.+.  .
T Consensus         5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~----d~~-----------VYk~VG~vlv~qd~   69 (121)
T PRK09343          5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPD----DTP-----------IYKIVGNLLVKVDK   69 (121)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----cch-----------hHHHhhHHHhhccH
Confidence            344445555555556666666666666666666666666655532111    111           13457887744  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006828          466 VEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLL  505 (629)
Q Consensus       466 IeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~  505 (629)
                      .+-...|++|.+|+......|+.+...++..+..++..+.
T Consensus        70 ~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~  109 (121)
T PRK09343         70 TKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKIN  109 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344677888888887777777777777776555554443

>PF15066 CAGE1: Cancer-associated gene protein 1 family

Probab=89.40  E-value=37  Score=37.22  Aligned_cols=49  Identities=12%  Similarity=0.105  Sum_probs=22.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHHHHHHHHHHHHHH
Q 006828          239 VGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIV  287 (629)
Q Consensus       239 ~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~el~ele~ela~l~e~l  287 (629)
                      ..+.+.+..+...+...++.+.+.+.+.+.++-++..+...+..|++..
T Consensus       386 nd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry  434 (527)
T PF15066_consen  386 NDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY  434 (527)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence            3444444444444445555555554444444444444444444444433

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure

Probab=89.33  E-value=44  Score=37.93  Aligned_cols=26  Identities=23%  Similarity=0.161  Sum_probs=14.1

Q ss_pred             HHHHHHHHHHhhhhhhhhHHHhhhhh
Q 006828           75 AKAALEAELSLFGVEKSELLAELSGE  100 (629)
Q Consensus        75 ~~~~~~~~l~~~~~~~~~l~~~~~~~  100 (629)
                      --+.+-..|.++..|...|+..+..+
T Consensus       110 e~a~lk~~l~e~~~El~~l~~~l~~l  135 (511)
T PF09787_consen  110 ELAVLKIRLQELDQELRRLRRQLEEL  135 (511)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555566666666666555

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=89.20  E-value=20  Score=33.92  Aligned_cols=40  Identities=15%  Similarity=0.277  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          389 HKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALD  428 (629)
Q Consensus       389 ~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le  428 (629)
                      -.....+.-.+.-++.+-..+....+.+..++..+..+++
T Consensus        83 Ye~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tie  122 (159)
T PF05384_consen   83 YEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIE  122 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=89.03  E-value=29  Score=35.45  Aligned_cols=58  Identities=16%  Similarity=0.175  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006828          157 ERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLK  214 (629)
Q Consensus       157 ~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~  214 (629)
                      ++..+.+|.++.+.-.=.++.+...+..-+....+-...+..|+++-..+-...+.+.
T Consensus        23 lE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~le   80 (307)
T PF10481_consen   23 LEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLE   80 (307)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHH
Confidence            3344444444444333333333333333333333333333333333333333333333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=88.93  E-value=4.6  Score=39.69  Aligned_cols=74  Identities=14%  Similarity=0.086  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHh
Q 006828          467 EELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN---SDRALSMLKNTAAMVC  540 (629)
Q Consensus       467 eEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v---aiee~~~~ker~~fl~  540 (629)
                      -+|-.++++|+.+....+.+.+.-..|..+++.++..+...+.+++.|..+..-|..-   -..+|..++.|++-|.
T Consensus       128 ~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe  204 (290)
T COG4026         128 PEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE  204 (290)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence            3333444444444333333333333333333333333333344444333333333322   1225555666665543

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=88.83  E-value=70  Score=39.67  Aligned_cols=8  Identities=25%  Similarity=1.070  Sum_probs=5.2

Q ss_pred             cchhhhHh
Q 006828          604 KSFWTVVS  611 (629)
Q Consensus       604 ~~~~~~~~  611 (629)
                      .-+||.+.
T Consensus       523 al~~t~l~  530 (1109)
T PRK10929        523 TVFWSILV  530 (1109)
T ss_pred             HHHHHHHH
Confidence            45777774

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=88.52  E-value=16  Score=31.95  Aligned_cols=24  Identities=13%  Similarity=0.322  Sum_probs=8.9

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHH
Q 006828          336 IERLIEEKDEISHRLEKAVVVLDD  359 (629)
Q Consensus       336 l~~l~~e~~~le~~i~el~~el~~  359 (629)
                      +..+..+..+....+.+++..+++
T Consensus        46 l~~L~~q~~s~~qr~~eLqaki~e   69 (107)
T PF09304_consen   46 LQSLQAQNASRNQRIAELQAKIDE   69 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=88.08  E-value=25  Score=37.95  Aligned_cols=17  Identities=35%  Similarity=0.468  Sum_probs=11.4

Q ss_pred             cHHHHHhhhhhhHHHhh
Q 006828           44 PSEQIKRLKSLNDLLVH   60 (629)
Q Consensus        44 ~~~~~~~l~~~~~~l~~   60 (629)
                      |.++|--.-+||+-|+.
T Consensus        38 p~eQF~~F~~L~~WL~~   54 (359)
T PF10498_consen   38 PGEQFYYFTSLCAWLIS   54 (359)
T ss_pred             chHHHHHHHHHHHHHHH
Confidence            66666666666666665

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PRK13895 conjugal transfer protein TraM; Provisional

Probab=87.51  E-value=2.9  Score=38.33  Aligned_cols=25  Identities=16%  Similarity=0.369  Sum_probs=19.5

Q ss_pred             cccchhhhHhhHHHHHHHHHHHHHh
Q 006828          602 KKKSFWTVVSSATTIFAAASVAYIA  626 (629)
Q Consensus       602 ~~~~~~~~~~~~~~~~~~~~~~~~~  626 (629)
                      |+-+.|.+++|++|+||++-+.++.
T Consensus       119 r~~a~~nl~As~~~~~a~~v~~~~~  143 (144)
T PRK13895        119 RRVAMMNLVASGMAVLAACVALWAS  143 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3568899999999998888776653

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=87.41  E-value=41  Score=36.77  Aligned_cols=55  Identities=15%  Similarity=0.194  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 006828          202 EILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIV  256 (629)
Q Consensus       202 q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~  256 (629)
                      +++..+..+..+..+.+.+......+.......+..+..++..+.....++....
T Consensus       348 qlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~  402 (493)
T KOG0804|consen  348 QLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER  402 (493)
T ss_pred             HHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444445555555455555555555544444444433

>PF13166 AAA_13: AAA domain

Probab=87.21  E-value=69  Score=37.73  Aligned_cols=11  Identities=18%  Similarity=0.235  Sum_probs=5.7

Q ss_pred             hhHHHHHHHHH
Q 006828          135 ERENEIIALKS  145 (629)
Q Consensus       135 ~Rk~Ei~~L~e  145 (629)
                      .+...+...+.
T Consensus       269 ~~~~~l~~~f~  279 (712)
T PF13166_consen  269 ERKERLEKYFD  279 (712)
T ss_pred             HHHHHHHHHHH
Confidence            45555555444

>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]

Probab=86.77  E-value=63  Score=36.80  Aligned_cols=46  Identities=11%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHH
Q 006828          344 DEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLH  389 (629)
Q Consensus       344 ~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~  389 (629)
                      .+++.+.-++-.++..++-.+..+.+++.+.++.++..+..+.+++
T Consensus       170 tsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qevn  215 (861)
T KOG1899|consen  170 TSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVN  215 (861)
T ss_pred             hhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHH
Confidence            3444444455556666666666666666667777777666666655

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=86.64  E-value=11  Score=30.86  Aligned_cols=65  Identities=22%  Similarity=0.308  Sum_probs=46.9

Q ss_pred             HHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828          456 SEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES  520 (629)
Q Consensus       456 ~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~  520 (629)
                      ..|..-...|++.+..++.+.+.|..+...|......|..+...++.+...+..+++.|-..|..
T Consensus         7 ~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~   71 (72)
T PF06005_consen    7 EQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLEE   71 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            34444555677777777777777777777777777777777777777777888888777766653

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=86.25  E-value=8.2  Score=38.00  Aligned_cols=67  Identities=10%  Similarity=0.128  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          354 VVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNEL  420 (629)
Q Consensus       354 ~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l  420 (629)
                      ...+.+++..+++...++.+|.+.+..+++++...+..+..+..+.+.++..+.++..+...+..++
T Consensus       134 ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~  200 (290)
T COG4026         134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW  200 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence            3334444444555555555555555555555555555555555555555544444444444444333

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=85.97  E-value=17  Score=38.19  Aligned_cols=86  Identities=15%  Similarity=0.162  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 006828          139 EIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKN  218 (629)
Q Consensus       139 Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~  218 (629)
                      .++.|+..++++..+..+..-...+|..+...+.-+++.+...+..+...+..+...+........+++..+..+..++.
T Consensus        78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~  157 (302)
T PF09738_consen   78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD  157 (302)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999888888888888888888877777777777777777777766665555555555555555555544


Q ss_pred             hHHHhH
Q 006828          219 ERDGDI  224 (629)
Q Consensus       219 ~l~~~i  224 (629)
                      .+...+
T Consensus       158 ~Lre~L  163 (302)
T PF09738_consen  158 ELREQL  163 (302)
T ss_pred             HHHHHH
Confidence            444433

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]

Probab=85.91  E-value=1e+02  Score=38.44  Aligned_cols=100  Identities=11%  Similarity=0.132  Sum_probs=59.6

Q ss_pred             HHhhhHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHhhhhhh-HhhhhHhH-HHHhhhhhHH-HHHHHHHHHHH
Q 006828          499 LMQKNLLEAKRNADDLRAKMESIGFN-SDRALSMLKNTAAMVCQSEND-IDGQQELV-VDEKKLQGET-DQYAAEFQAIV  574 (629)
Q Consensus       499 ~l~~~l~~~~k~i~~Lk~~I~~lg~v-aiee~~~~ker~~fl~~q~~D-~~ak~~l~-~i~~~~~~m~-~~f~~~f~~i~  574 (629)
                      .+...+.++.+.+..+..+|-..+.- --+++..+.+.++.+.....+ ..--..+. -|........ ..|...-..-.
T Consensus      1012 ~l~~q~~e~~re~~~ld~Qi~~~~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr 1091 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEADIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYR 1091 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHH
Confidence            34445566667777777777777722 345888888888888888887 66666666 6666665555 44444433333


Q ss_pred             HHcc---chhHhHHHHHHHHHHHhhhH
Q 006828          575 NAFR---NREKLVEDMKHRVELMQNSV  598 (629)
Q Consensus       575 ~~F~---~~~~~~~~~~~~~~~~~~~~  598 (629)
                      ..|-   ...-+..|+-+=...|..|.
T Consensus      1092 ~~~ie~~tt~~~~~DL~ky~~aLD~Ai 1118 (1294)
T KOG0962|consen 1092 KALIELKTTELSNKDLDKYYKALDKAI 1118 (1294)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332   44444555544444444444

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=85.72  E-value=1.6  Score=45.87  Aligned_cols=74  Identities=16%  Similarity=0.275  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 006828          181 EASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKV  254 (629)
Q Consensus       181 ~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~  254 (629)
                      +|..+.+.+..++.....+...+..+...+..+...+..+...+......+..+...+..++..++.+...+..
T Consensus        29 DLs~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~  102 (326)
T PF04582_consen   29 DLSPIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSS  102 (326)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence            34444444444444444444444444444444444444443333333333333333333333333333333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=85.45  E-value=57  Score=35.76  Aligned_cols=17  Identities=12%  Similarity=0.167  Sum_probs=6.5

Q ss_pred             HHHhhHHHHHHHHHHHH
Q 006828          269 QKVINDELEKEVNKLNE  285 (629)
Q Consensus       269 l~~el~ele~ela~l~e  285 (629)
                      ....+.++..++..+..
T Consensus       380 ~e~k~~q~q~k~~k~~k  396 (493)
T KOG0804|consen  380 VERKLQQLQTKLKKCQK  396 (493)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            33333333333333333

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=85.39  E-value=25  Score=30.97  Aligned_cols=96  Identities=16%  Similarity=0.172  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHHHHhhhchHH--hHHHHHHH
Q 006828          395 LRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEE--KVEELAKT  472 (629)
Q Consensus       395 l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~--AIeEyeev  472 (629)
                      +...+..++.++..+...+..+...+.++..++..+...-++    .           .=....|+|...  .-+-...+
T Consensus         8 ~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d----~-----------~vyk~VG~vlv~~~~~e~~~~l   72 (110)
T TIGR02338         8 QLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDD----T-----------PVYKSVGNLLVKTDKEEAIQEL   72 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc----c-----------hhHHHhchhhheecHHHHHHHH
Confidence            334444455555555555556655555556555554311111    1           113456766633  22333556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006828          473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLL  505 (629)
Q Consensus       473 keRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~  505 (629)
                      +.|.+|+....+.|..++..++..+..++..+.
T Consensus        73 ~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~  105 (110)
T TIGR02338        73 KEKKETLELRVKTLQRQEERLREQLKELQEKIQ  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            667777766666666666666665555554443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>TIGR00618 sbcc exonuclease SbcC

Probab=85.02  E-value=1.1e+02  Score=38.00  Aligned_cols=26  Identities=12%  Similarity=-0.022  Sum_probs=20.8

Q ss_pred             hhhhhhhhHHHHHHHHHHHHhHHHhH
Q 006828          129 LDEEKNERENEIIALKSEVSGLMGNI  154 (629)
Q Consensus       129 vd~~~~~Rk~Ei~~L~eela~l~~~~  154 (629)
                      |+.++...+.++..+...+-|+..|.
T Consensus       154 ~~~fl~a~~~eR~~il~~l~g~~~y~  179 (1042)
T TIGR00618       154 FAQFLKAKSKEKKELLMNLFPLDQYT  179 (1042)
T ss_pred             hHHHHhCCHHHHHHHHHHHhCcHHHH
Confidence            67778888888888888888777764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=84.32  E-value=74  Score=35.43  Aligned_cols=28  Identities=25%  Similarity=0.183  Sum_probs=15.6

Q ss_pred             HHhhhhhhhhHHHhhhhhccchhhhhhh
Q 006828           83 LSLFGVEKSELLAELSGESDQKVSLEIE  110 (629)
Q Consensus        83 l~~~~~~~~~l~~~~~~~~~~~~~~~~~  110 (629)
                      |...|+==-.|-..++++.+.+.+++=.
T Consensus        78 lElaAkiGqsllk~nk~Lq~~nesLeEq  105 (596)
T KOG4360|consen   78 LELAAKIGQSLLKANKALQEDNESLEEQ  105 (596)
T ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhHhh
Confidence            3334433344555666777777766644

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=84.14  E-value=72  Score=35.17  Aligned_cols=51  Identities=14%  Similarity=0.225  Sum_probs=29.1

Q ss_pred             hhhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006828          111 KGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREK  168 (629)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~  168 (629)
                      +.+...|.+........       ....-+.-|..++..+...+...+..+.......
T Consensus       151 n~~~~~y~~~~~~~~~~-------~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~  201 (444)
T TIGR03017       151 NAFAQAYIDTNIELKVE-------PAQKAALWFVQQIAALREDLARAQSKLSAYQQEK  201 (444)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            46666776654433322       2222345566666666666666666666666554

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins

Probab=83.70  E-value=40  Score=31.93  Aligned_cols=14  Identities=21%  Similarity=0.283  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHHHHH
Q 006828          186 KDRLIEMEGKERNL  199 (629)
Q Consensus       186 ~~~l~ele~~~~~l  199 (629)
                      +..+..+-...+.|
T Consensus        40 k~~v~~~I~evD~L   53 (159)
T PF05384_consen   40 KEEVSEVIEEVDKL   53 (159)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33333333333333

The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction

>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]

Probab=83.23  E-value=82  Score=35.10  Aligned_cols=25  Identities=16%  Similarity=0.428  Sum_probs=11.8

Q ss_pred             HHHHHHH-HHccchh-HhHHHHHHHHH
Q 006828          568 AEFQAIV-NAFRNRE-KLVEDMKHRVE  592 (629)
Q Consensus       568 ~~f~~i~-~~F~~~~-~~~~~~~~~~~  592 (629)
                      ..+-.+. .+|-++- .+++.|-+.+-
T Consensus       442 s~L~rL~re~yls~~~f~~~e~q~~~q  468 (596)
T KOG4360|consen  442 SALQRLSRENYLSEGSFFLEEMQRKVQ  468 (596)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHH
Confidence            3333343 4444333 56666655543

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=82.55  E-value=23  Score=29.02  Aligned_cols=63  Identities=24%  Similarity=0.403  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          358 DDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNEL  420 (629)
Q Consensus       358 ~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l  420 (629)
                      ......|..+..+...|....-.....|..|+..+..+...+..+...+......+..+...+
T Consensus         8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l   70 (74)
T PF12329_consen    8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL   70 (74)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334444555555555555555555566666666666666666665555555555555554443

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer

Probab=81.91  E-value=3  Score=43.85  Aligned_cols=21  Identities=10%  Similarity=0.123  Sum_probs=1.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 006828          301 ILELENSCSEAMDEKLEMVLE  321 (629)
Q Consensus       301 i~~le~~l~~~~~~~~~l~~e  321 (629)
                      +..+...+......+..+...
T Consensus       100 Vs~lS~~ls~h~ssIS~Lqs~  120 (326)
T PF04582_consen  100 VSSLSSTLSDHSSSISDLQSS  120 (326)
T ss_dssp             ------------------HHH
T ss_pred             HHhhhhhhhhhhhhHHHHHHh
Confidence            333333333333333333333

It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.

>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.00  E-value=1e+02  Score=34.67  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=10.0

Q ss_pred             HHHHHHHHHhHHHhHHHHHHHHHHHHH
Q 006828          140 IIALKSEVSGLMGNIENERERLSQACR  166 (629)
Q Consensus       140 i~~L~eela~l~~~~~~~ke~l~~L~~  166 (629)
                      ...|++.+..+...+..+...+..++.
T Consensus       340 ~kdLkEkv~~lq~~l~eke~sl~dlke  366 (654)
T KOG4809|consen  340 NKDLKEKVNALQAELTEKESSLIDLKE  366 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333333333

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.72  E-value=78  Score=33.19  Aligned_cols=89  Identities=18%  Similarity=0.203  Sum_probs=56.4

Q ss_pred             hHHHHHHHHHHHHHHhhhhhhHhhhhHhH-HHHhhhhhHHHHHHHHHHHHHHHccchhHhHHHHHHHHHHHhhhHHhhcc
Q 006828          525 SDRALSMLKNTAAMVCQSENDIDGQQELV-VDEKKLQGETDQYAAEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKK  603 (629)
Q Consensus       525 aiee~~~~ker~~fl~~q~~D~~ak~~l~-~i~~~~~~m~~~f~~~f~~i~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~  603 (629)
                      +-.-|.++++|++=++.-..   +..+|. +--+|-.-+..+ .+..+.|..+   =..+++.+.+=...++.||.-+||
T Consensus       194 ~~~~l~Eiq~Rh~~ik~LEk---si~ELhqlFlDMa~LVe~Q-gEmvd~IE~n---V~~A~~~V~~g~~~~~kAv~~qkk  266 (297)
T KOG0810|consen  194 AKQTLAEIQERHDEIKKLEK---SIRELHQLFLDMAVLVESQ-GEMVDRIENN---VENAVDYVEQGVDHLKKAVKYQKK  266 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH-HhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44577788888876665544   666666 555555433333 4555555554   345666667777778888877788


Q ss_pred             cchhhhHhhHHHHHHHH
Q 006828          604 KSFWTVVSSATTIFAAA  620 (629)
Q Consensus       604 ~~~~~~~~~~~~~~~~~  620 (629)
                      .--|+|++-...++.++
T Consensus       267 aRK~k~i~ii~~iii~~  283 (297)
T KOG0810|consen  267 ARKWKIIIIIILIIIIV  283 (297)
T ss_pred             hhhceeeeehHHHHHHH
Confidence            88899997544433333

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=80.64  E-value=52  Score=33.48  Aligned_cols=103  Identities=8%  Similarity=0.041  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc---hHHHHHH-HHHHHHHHhhhhhhHhh
Q 006828          473 RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN---SDRALSM-LKNTAAMVCQSENDIDG  548 (629)
Q Consensus       473 keRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v---aiee~~~-~ker~~fl~~q~~D~~a  548 (629)
                      ..+|..+..+.+.|......+...+.+....+..+..++..+..--..|.|+   .++.+.. |..-.=|+...+.  ..
T Consensus        55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR~--~R  132 (251)
T PF11932_consen   55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEERQ--ER  132 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHH--HH
Confidence            3333333333333333333333333333334444444444444444444454   3333332 2222233333333  22


Q ss_pred             hhHhH-HHHhhhhhHHHHHHHHHHHHHHHc
Q 006828          549 QQELV-VDEKKLQGETDQYAAEFQAIVNAF  577 (629)
Q Consensus       549 k~~l~-~i~~~~~~m~~~f~~~f~~i~~~F  577 (629)
                      -..|. ++.+-+-...++|..-|++....-
T Consensus       133 l~~L~~~l~~~dv~~~ek~r~vlea~~~E~  162 (251)
T PF11932_consen  133 LARLRAMLDDADVSLAEKFRRVLEAYQIEM  162 (251)
T ss_pred             HHHHHHhhhccCCCHHHHHHHHHHHHHHHH
Confidence            35555 666666667777777777665543

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PHA01750 hypothetical protein

Probab=80.45  E-value=1.6  Score=34.21  Aligned_cols=19  Identities=37%  Similarity=0.471  Sum_probs=16.5

Q ss_pred             hhhhHh-hHHHHHHHHHHHH
Q 006828          606 FWTVVS-SATTIFAAASVAY  624 (629)
Q Consensus       606 ~~~~~~-~~~~~~~~~~~~~  624 (629)
                      +.|+|| ++||+||-+++-|
T Consensus         7 vLtlmSTtaTtlFaIiqlYl   26 (75)
T PHA01750          7 VLTLMSTTATTLFAIIQLYL   26 (75)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            578887 8999999999877

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=80.33  E-value=1e+02  Score=34.31  Aligned_cols=22  Identities=14%  Similarity=0.193  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHH
Q 006828          194 GKERNLRSEILVLQSDYGRLKK  215 (629)
Q Consensus       194 ~~~~~le~q~~~l~~e~~~L~~  215 (629)
                      ..+..+..++..+..+...|..
T Consensus        97 ~~~~~~~~~~~~~~~~~~rL~a  118 (457)
T TIGR01000        97 NQKQLLEQQLDNLKDQKKSLDT  118 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444433

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=80.01  E-value=59  Score=31.29  Aligned_cols=39  Identities=18%  Similarity=0.277  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHhhc
Q 006828          484 KKMESHIGLLAEEKELMQK-NLLEAKRNADDLRAKMESIG  522 (629)
Q Consensus       484 ~DLe~~~~~L~~e~~~l~~-~l~~~~k~i~~Lk~~I~~lg  522 (629)
                      -.+...++.|+.++....+ ++..++.....|+.+++.|.
T Consensus        54 ~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~   93 (177)
T PF07798_consen   54 YLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLR   93 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555443332 23444555555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	629
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-21
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-20
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	4e-12
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-10
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-18
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-09
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-05
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	5e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	7e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 97.2 bits (242), Expect = 4e-21
 Identities = 59/338 (17%), Positives = 136/338 (40%), Gaps = 14/338 (4%)

Query: 160  RLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNE 219
            ++++   E      EL    +   + +  L E+E K   L  E  +LQ       +   E
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 220  RDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKE 279
             +        +K  L + L  +E   ++ + + + +  EK  ++ Q  + +   +E E  
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 280  VNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERL 339
              KL    +    + K +   IL +E+  ++   E+  +   +  L     E++++ + L
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 340  IEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVV 399
             + K++    +        + E  + K  + + ++E+ K   + E S LH++I EL+  +
Sbjct: 1031 TKLKNKHESMI-------SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083

Query: 400  FKLKASCRDQQDKSKQLVNELADYKSALDQATLER-------DNAWKDLDEQRKSGMDLR 452
             +LKA    ++++ +  +  L D  S  + A  +         +  +DL+ ++ +     
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAE 1143

Query: 453  LKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHI 490
             +  ++ +  E    EL  T +   T  +LR       
Sbjct: 1144 KQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 95.3 bits (237), Expect = 2e-20
 Identities = 58/333 (17%), Positives = 129/333 (38%), Gaps = 4/333 (1%)

Query: 188  RLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDD 247
            ++   E + +    E+   +    + + E  E +       +EK LL ++L    +   +
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910

Query: 248  LKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCGKILELENS 307
             +     +  +K  +E    E +   +E E+   +L      +Q++   L  ++ E E +
Sbjct: 911  AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970

Query: 308  CSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKL 367
              +   EK+    +IK + D     + +  +L +E+  +  R+      L ++E +   L
Sbjct: 971  RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030

Query: 368  LREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSAL 427
             + KN  E      +  +    K   EL  +  KL+    D  ++  +L  ++A+ K+ L
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090

Query: 428  DQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKME 487
             +   E   A   L+++     +   K+ E+E    +  E+L   +  R      ++ + 
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150

Query: 488  SHIGLLAEEKELMQKNLLEAKRNADDLRAKMES 520
              +  L  E E    + L+      +LR     
Sbjct: 1151 EELEALKTELE----DTLDTTATQQELRGSDYK 1179

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 94.1 bits (234), Expect = 5e-20
 Identities = 57/324 (17%), Positives = 137/324 (42%)

Query: 224  IEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKL 283
            ++A  +E     +R    E E  +L+ K   + +EKN ++ +   +  +  E E+   +L
Sbjct: 859  MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRL 918

Query: 284  NEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEK 343
                  L++    +  +I E E    +   EK +M  ++  L +Q  E++   ++L  EK
Sbjct: 919  AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978

Query: 344  DEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLK 403
                 +++K    +   E +  KL +E+  +EER       ++   ++   L  +  K +
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038

Query: 404  ASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFE 463
            +   + + + K+      + +    +   E  +  + + E +    +L+ +L++ E+  +
Sbjct: 1039 SMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQ 1098

Query: 464  EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGF 523
              +  L    +++   +   +++ESHI  L E+ E  +    +A++   DL  ++E++  
Sbjct: 1099 AALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158

Query: 524  NSDRALSMLKNTAAMVCQSENDID 547
              +  L        +      D D
Sbjct: 1159 ELEDTLDTTATQQELRGSDYKDDD 1182

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 91.8 bits (228), Expect = 2e-19
 Identities = 61/326 (18%), Positives = 136/326 (41%), Gaps = 7/326 (2%)

Query: 119  MTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQ 178
            + + KE  +  + E  E E +   L  E + L   ++ E E  ++A   +  +  +    
Sbjct: 866  LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925

Query: 179  VKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRL 238
             +    ++ R+ E E + + L++E   +Q     L+++  E +   +  + EK     ++
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985

Query: 239  VGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLC 298
              +E +   ++ +   + KE+  +E + S+      E E++   L ++    +     L 
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 299  GKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLD 358
             ++ + E S  E    K ++  E   L +Q  E Q +I  L  +  +    L+ A+  L+
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105

Query: 359  DKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVN 418
            D+  +    L++  ++E         IS L +++   +    K +   RD  ++ + L  
Sbjct: 1106 DETSQKNNALKKIRELESH-------ISDLQEDLESEKAARNKAEKQKRDLSEELEALKT 1158

Query: 419  ELADYKSALDQATLERDNAWKDLDEQ 444
            EL D           R + +KD D++
Sbjct: 1159 ELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.8 bits (176), Expect = 5e-13
 Identities = 67/377 (17%), Positives = 144/377 (38%), Gaps = 57/377 (15%)

Query: 46   EQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKV 105
            E+++R K           E  Q+   L + K  L+ +L       +E        + +K 
Sbjct: 864  EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ 923

Query: 106  SLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQAC 165
             LE             + EM   ++EE+   +                ++ E++++ Q  
Sbjct: 924  ELEE-----------ILHEMEARIEEEEERSQQ---------------LQAEKKKMQQQM 957

Query: 166  REKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIE 225
             +   ++ +L+ +     +L+   +  +GK + +  +IL+++    +L KE+        
Sbjct: 958  LD---LEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKL------ 1008

Query: 226  AFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNE 285
                    L +R+  L     + + K K + K KN  E   SE +V   + EK   +L +
Sbjct: 1009 --------LEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK 1060

Query: 286  IVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDE 345
            I   L+ E   L  +I EL+   +E   +  +   E++A L +  ++  +    +++  E
Sbjct: 1061 IKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRE 1120

Query: 346  ISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKAS 405
            +   +      L+ ++    K  ++K D+ E       E+  L  E+ +  D       +
Sbjct: 1121 LESHISDLQEDLESEKAARNKAEKQKRDLSE-------ELEALKTELEDTLD-------T 1166

Query: 406  CRDQQDKSKQLVNELAD 422
               QQ+       +  D
Sbjct: 1167 TATQQELRGSDYKDDDD 1183

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 68.3 bits (167), Expect = 4e-12
 Identities = 53/330 (16%), Positives = 129/330 (39%), Gaps = 45/330 (13%)

Query: 275  ELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQK 334
              E+E+   +E +   ++ ++    ++ ELE   ++  +EK  +  +++A  +   E ++
Sbjct: 854  RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913

Query: 335  RIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGE 394
               RL  +K E+   L +    ++++E    +L  EK  +++       ++  L +++ E
Sbjct: 914  MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ-------QMLDLEEQLEE 966

Query: 395  LRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLK 454
                  KL+        K K++ +++   +   ++ T ER    K L+E+          
Sbjct: 967  EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER----KLLEERVS-------D 1015

Query: 455  LSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDL 514
            L+      EEK + L K +N+ E+++                 EL  +   E K   +  
Sbjct: 1016 LTTNLAEEEEKAKNLTKLKNKHESMIS----------------ELEVRLKKEEKSRQELE 1059

Query: 515  RAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYAAEFQAIV 574
            + K         +      +    + + +  I   +  +    K + E     A  +   
Sbjct: 1060 KIK--------RKLEGESSDLHEQIAELQAQIAELKAQL---AKKEEELQAALARLEDET 1108

Query: 575  NAFRNREKLVEDMKHRVELMQNSVEAQKKK 604
            +   N  K + +++  +  +Q  +E++K  
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAA 1138

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 63.7 bits (155), Expect = 1e-10
 Identities = 48/299 (16%), Positives = 112/299 (37%), Gaps = 21/299 (7%)

Query: 37   HRNSMEDPSEQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAE 96
                  +  E   RL +    L    HE   ++E   +    L+AE      +  +L  +
Sbjct: 904  ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963

Query: 97   LSGESDQKVSLEIEKGLFCVFLMTQMKEMGE---GLDEEKNERENEIIALKSEVSGLMGN 153
            L  E   +  L++EK    V    ++K+M +    ++++ N+   E   L+  VS L  N
Sbjct: 964  LEEEEAARQKLQLEK----VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN 1019

Query: 154  IENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRL 213
            +  E E+     + K              ++ +  + E+E + +        L+    +L
Sbjct: 1020 LAEEEEKAKNLTKLK--------------NKHESMISELEVRLKKEEKSRQELEKIKRKL 1065

Query: 214  KKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVIN 273
            + E ++    I   + +   L  +L   E+E      +++    +KN    +  E +   
Sbjct: 1066 EGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI 1125

Query: 274  DELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREK 332
             +L++++          +K+++ L  ++  L+    + +D          +    + +K
Sbjct: 1126 SDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 41/284 (14%), Positives = 104/284 (36%), Gaps = 24/284 (8%)

Query: 328  QEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISG 387
            +   +++ ++   EE      R +KA   L + E +  +L  EKN ++E+       +  
Sbjct: 851  KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEK-------LQA 903

Query: 388  LHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKS 447
              +   E  ++  +L A  ++ ++   ++   + + +    Q   E+    + + +  + 
Sbjct: 904  ETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ 963

Query: 448  GMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEA 507
              +      +++        ++ K  ++   + D   K+     LL E    +  NL E 
Sbjct: 964  LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023

Query: 508  KRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKLQGETDQYA 567
            +  A +L                     + +  + + +   +QEL   ++KL+GE+    
Sbjct: 1024 EEKAKNLTKLKNK----------HESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLH 1073

Query: 568  -------AEFQAIVNAFRNREKLVEDMKHRVELMQNSVEAQKKK 604
                   A+   +      +E+ ++    R+E   +      KK
Sbjct: 1074 EQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 87.6 bits (216), Expect = 6e-18
 Identities = 92/597 (15%), Positives = 184/597 (30%), Gaps = 154/597 (25%)

Query: 38  RNSMEDPS-------EQIKRLKSLNDLLVHRSHEQRQQVESLSQAKAALEAE--LSLFGV 88
           +     PS       EQ  RL + N +    +  + Q    L QA   L     + + GV
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 89  E---KSELLAELSGESDQKVSLEIEKGLFCVFLMTQMKEMGEGLDEEKNERENEIIALKS 145
               K+ +  ++      KV  +++   F +F +     +        N  E  +  L+ 
Sbjct: 159 LGSGKTWVALDVC--LSYKVQCKMD---FKIFWLN----LKN-----CNSPETVLEMLQK 204

Query: 146 EVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILV 205
            +  +  N  +  +  S        ++ EL            RL++ +  E  L    LV
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----------RLLKSKPYENCL----LV 249

Query: 206 LQSDYGRLKKEKNERDGD-IEAFKKE-KGLLGKRLVGLEKETDDL---KLKIKVIVKEKN 260
           L           N ++     AF    K LL  R   +   TD L         +     
Sbjct: 250 L--L--------NVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHSM 296

Query: 261 AIEMQNSEQ---KVIN---DELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSE---- 310
            +     +    K ++    +L +EV   N   L++         + +    +  +    
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-------IAESIRDGLATWDNWKH 349

Query: 311 AMDEKLEMVLE--IKALLDQEREKQKRIERL-IEEKD-EISHRLEKAVVVL--DDKEGE- 363
              +KL  ++E  +  L  +  E +K  +RL +      I       + ++  D  + + 
Sbjct: 350 VNCDKLTTIIESSLNVL--EPAEYRKMFDRLSVFPPSAHIP---TILLSLIWFDVIKSDV 404

Query: 364 --IAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA 421
             +   L + + +E++          +         +  +LK           +L NE A
Sbjct: 405 MVVVNKLHKYSLVEKQ---PKESTISIP-------SIYLELK----------VKLENEYA 444

Query: 422 DYKSALDQATLERDNAWKDLDEQRKSG-----MDLRLKLSEMEKRFEEKVEELAKTRNER 476
            ++S +D   + +     DL            +   LK  E  +R              R
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF----------R 494

Query: 477 ETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTA 536
              +D R                     LE K   D           N+   L  LK   
Sbjct: 495 MVFLDFR--------------------FLEQKIRHDSTAWNASGSILNT---LQQLKFYK 531

Query: 537 AMVCQSENDIDGQQELVVDEKK--LQGETDQYAAEFQAIVN-AFRNREKLVEDMKHR 590
             +C ++   +    LV        + E +   +++  ++  A    ++ + +  H+
Sbjct: 532 PYICDNDPKYE---RLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 67.2 bits (163), Expect = 1e-11
 Identities = 63/524 (12%), Positives = 144/524 (27%), Gaps = 175/524 (33%)

Query: 165 CRE-KDLMKG-----ELDCQVKEASRLK--DRLIE-MEGKERNLRSEIL--VLQSDYG-- 211
           C++ +D+ K      E+D  +     +    RL   +  K+  +  + +  VL+ +Y   
Sbjct: 35  CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL 94

Query: 212 --RLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQ 269
              +K E+ +       +                            +++++   + N  Q
Sbjct: 95  MSPIKTEQRQPSMMTRMY----------------------------IEQRD--RLYNDNQ 124

Query: 270 KVINDEL--EKEVNKLNEIVLALQKEEKVL------CGKILELENSCSEAMDEKLEMVLE 321
                 +   +   KL + +L L+  + VL       GK        +          + 
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK--------T---------WVA 167

Query: 322 IKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKL-LREKNDIEERKVC 380
           +   L  + + +                           + +I  L L+  N  E     
Sbjct: 168 LDVCLSYKVQCKM--------------------------DFKIFWLNLKNCNSPETVLEM 201

Query: 381 QDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKD 440
               +  +        D    +K      Q + ++L+     Y++ L    L   N    
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-KPYENCL----LVLLNVQ-- 254

Query: 441 LDEQRKSGMDLRLK-------------LSEMEKRFEEKVEELAKTRNERETL-------- 479
            + +  +  +L  K             LS         ++  + T    E          
Sbjct: 255 -NAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVKSLLLKYLD 312

Query: 480 ---VDLRKKMES----HIGLLAEE-----------KELMQKNLLEAKR------NADDLR 515
               DL +++ +     + ++AE            K +    L              + R
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 516 AKMESIG-FNSD-----RALSMLKNTAAMVCQSENDIDGQQELVVDE--KK--LQGETDQ 565
              + +  F          LS++           + I     +VV++  K   ++ +  +
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWF---------DVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 566 YAAEFQAIVNAFRNREKLVEDMK-HRVELMQNSVEAQKKKSFWT 608
                 +I      + KL  +   HR  +  +     K      
Sbjct: 424 STISIPSI--YLELKVKLENEYALHRSIV--DHYNIPKTFDSDD 463

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 46/275 (16%), Positives = 110/275 (40%), Gaps = 24/275 (8%)

Query: 61   RSHEQRQQVESLSQAKAALEAELSLFGVEKSELLAELSGESDQKVSLEIEKGLFCVFLMT 120
            R +  R++ + +  A  AL+A L         +  +      +  S+ I+K         
Sbjct: 827  RMYVVRKRYQCMRDATIALQALL-----RGYLVRNKYQMMLREHKSIIIQK--------- 872

Query: 121  QMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREK-DLMKGELDCQV 179
                 G       +     I+ L+     +M   E ++ ++     E+   +   L+ ++
Sbjct: 873  --HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKI 930

Query: 180  KEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLV 239
             +   L+ ++ E   + ++L  ++  L+  Y    ++       +   ++E      R++
Sbjct: 931  MQ---LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987

Query: 240  GLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVLCG 299
             L++E   L+ ++     EK  IE    + K   ++L  E+ + N     L+ E++ L  
Sbjct: 988  SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT---LLKTEKEELNR 1044

Query: 300  KILELENSCSEAMDEKLEM-VLEIKALLDQEREKQ 333
            +I +     +E M++KL     +++  L+ ER + 
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 37/256 (14%), Positives = 86/256 (33%), Gaps = 11/256 (4%)

Query: 214  KKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVIN 273
            K+ +  RD  I      +G L +    +        +  K +      +    + + ++ 
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892

Query: 274  DELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQ 333
             +            +  ++E K L         S        + +  +I  L  +  E+ 
Sbjct: 893  LQCCYRR-------MMAKRELKKLK----IEARSVERYKKLHIGLENKIMQLQRKIDEQN 941

Query: 334  KRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIG 393
            K  + L+E+ + +          L      +     E  +   R +    EI+ L KE+ 
Sbjct: 942  KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001

Query: 394  ELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRL 453
            + +     ++      + +++QLV+EL +  + L     E +    D  ++    M+ +L
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

Query: 454  KLSEMEKRFEEKVEEL 469
                 +   +   E L
Sbjct: 1062 VEETKQLELDLNDERL 1077

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 34/231 (14%), Positives = 78/231 (33%), Gaps = 12/231 (5%)

Query: 292  KEEKVLCGKILELENSC--SEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHR 349
            K  + +    + L+         ++   M+ E K+++ Q+  +                 
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRT------ 886

Query: 350  LEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEIS-GLHKEIGELRDVVFKLKASCRD 408
            L+  V +       +AK   +K  IE R V +  ++  GL  +I +L+  + +     + 
Sbjct: 887  LKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKS 946

Query: 409  QQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKVEE 468
              +K   L    +     L              +E + +   +     E+ K  +E  + 
Sbjct: 947  LLEKMNNLEITYSTETEKLRSDVERLR---MSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003

Query: 469  LAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKME 519
              + +   E     + + E  +  L E+  L++    E  R   D   ++ 
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT 1054

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 39/244 (15%), Positives = 90/244 (36%), Gaps = 12/244 (4%)

Query: 115  CVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLS----QACREKDL 170
             + L   ++        +   RE++ I ++  V G +  +   R   +    Q C  + +
Sbjct: 842  TIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMM 901

Query: 171  MKGELDCQVKEASR---LKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAF 227
             K EL     EA      K   I +E K   L+ +I     +Y  L ++ N  +      
Sbjct: 902  AKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 228  KKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIV 287
             ++     +RL   E+E  +   ++  + +E   +  +  + +     +E+  +K     
Sbjct: 962  TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021

Query: 288  LALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEIS 347
              L  E K    +   L+    E      +   EI   ++++  ++ +  +L  + ++  
Sbjct: 1022 EQLVSELK---EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETK--QLELDLNDER 1076

Query: 348  HRLE 351
             R +
Sbjct: 1077 LRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 40/216 (18%), Positives = 79/216 (36%), Gaps = 21/216 (9%)

Query: 188  RLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDD 247
            R              I+ LQ  Y R+  ++  +   IEA  +      K  +GLE +   
Sbjct: 875  RGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEA--RSVERYKKLHIGLENKIMQ 932

Query: 248  LKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVN-------KLNEIVLALQKEEKVLCGK 300
            L+ KI    KE  ++  + +        LE   +          E +   ++E K    +
Sbjct: 933  LQRKIDEQNKEYKSLLEKMNN-------LEITYSTETEKLRSDVERLRMSEEEAKNATNR 985

Query: 301  ILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDK 360
            +L L+   ++   E  +   E K + +   + +   E+L+ E  E +  L+      ++ 
Sbjct: 986  VLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTE---KEEL 1042

Query: 361  EGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELR 396
               I    +E  +  E+K     E   L  ++ + R
Sbjct: 1043 NRRIHDQAKEITETMEKK--LVEETKQLELDLNDER 1076

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 31/264 (11%), Positives = 85/264 (32%), Gaps = 21/264 (7%)

Query: 321  EIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVC 380
              + + D     Q  +   +          E   +++          +     ++     
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 381  QDNEISGL-HKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWK 439
            Q      +  +E+ +L+        S    +     L N++   +  +D+   E    +K
Sbjct: 894  QCCYRRMMAKRELKKLKI----EARSVERYKKLHIGLENKIMQLQRKIDEQNKE----YK 945

Query: 440  DLDEQRKSGMDLRLKLSEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKEL 499
             L E+  +          +E  +  + E+L           +  K   + +  L EE   
Sbjct: 946  SLLEKMNN----------LEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAK 995

Query: 500  MQKNLLEAKRNADDLRAKMESIGFNSDRALSMLKNTAAMVCQSENDIDGQQELVVDEKKL 559
            ++K L + +     +    +     +++ +S LK    ++   + ++   + +    K++
Sbjct: 996  LRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEEL--NRRIHDQAKEI 1053

Query: 560  QGETDQYAAEFQAIVNAFRNREKL 583
                ++   E    +    N E+L
Sbjct: 1054 TETMEKKLVEETKQLELDLNDERL 1077

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 26/195 (13%), Positives = 61/195 (31%), Gaps = 5/195 (2%)

Query: 168  KDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAF 227
            +   KG+   +++         + +  +E  +    L            +       EA 
Sbjct: 815  EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874

Query: 228  KKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIV 287
            + E     K  V L+K  + +  K++     K ++ + ++E       ++ ++  L    
Sbjct: 875  RIELKRQKKIAVLLQKY-NRILKKLENWATTK-SVYLGSNETGDSITAVQAKLKNLEAFD 932

Query: 288  LALQKEEKVLCGKILELENSCSEAMDEKL-EMVLEIKALLDQEREKQKRIERLIEEKDEI 346
               Q  E      +L +    +E     + E+         Q+    K        K+ +
Sbjct: 933  GECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVK--SSAETYKNTL 990

Query: 347  SHRLEKAVVVLDDKE 361
               LE+   + D   
Sbjct: 991  LAELERLQKIEDLHH 1005

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 Length = 430

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 29/161 (18%), Positives = 65/161 (40%), Gaps = 12/161 (7%)

Query: 220 RDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKE 279
           R+GD          +  + V  +  +  L+    +++K KN +  Q   +++   +   E
Sbjct: 113 RNGDTSYK------IDGKTVSYKDYSIFLE-NENILIKAKNFLVFQGDVEQIAA-QSPVE 164

Query: 280 VNKLNE---IVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRI 336
           ++++ E     +  +KE + L  KI +L  S +E++  +  +  E+K        +    
Sbjct: 165 LSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTY-KSPGLEVLFQ 223

Query: 337 ERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEER 377
                  DE   R E      +  + E  K+L +   I+++
Sbjct: 224 GPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKK 264

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 18/194 (9%)

Query: 178  QVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKR 237
            +  +    +  L     K R+  +++  LQ    +  +E + ++              ++
Sbjct: 1911 KRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQAN----------QK 1960

Query: 238  LVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKVINDELEKEVNKLNEIVLALQKEEKVL 297
            L  + ++    ++K K   + +  ++++N E  V   +   ++ K        ++ E   
Sbjct: 1961 LKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVE--- 2017

Query: 298  CGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLEKAVVVL 357
                 +LEN+ +E   ++ E+V  I AL       ++    LI E ++I     K    +
Sbjct: 2018 -----QLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072

Query: 358  DDKEGEIAKLLREK 371
            D     +  L  E+
Sbjct: 2073 DRSIALLDNLNSER 2086

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	629
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.53
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	99.49
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	99.18
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	97.76
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.2
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	97.11
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	97.0
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.72
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	96.43
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	96.22
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.97
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.61
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.0
3bas_A	89	Myosin heavy chain, striated muscle/general contro	93.8
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	91.08
4gkw_A	167	Spindle assembly abnormal protein 6; double helix,	90.47
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	88.79
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	85.81
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	85.61
3q8t_A	96	Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90	83.29
2v4h_A	110	NF-kappa-B essential modulator; transcription, met	83.27
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	82.55
3okq_A	141	BUD site selection protein 6; coiled-coil, protein	81.96

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.53  E-value=2e-14  Score=174.49  Aligned_cols=334  Identities=15%  Similarity=0.148  Sum_probs=68.4

Q ss_pred             hhHHHHHhhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 006828          112 GLFCVFLMTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIE  191 (629)
Q Consensus       112 ~~~~~~~~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~e  191 (629)
                      +||++|.+.+|........+.+.....++..+...+..+...+..++..+..+..+...+...+......+..+...+  
T Consensus       838 ~~~rl~~klkpLl~~a~~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l--  915 (1184)
T 1i84_S          838 PWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR--  915 (1184)
T ss_dssp             HHHHHHHHHTTTCCCCTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            899999999998888777888888888888888888888777777777777776666655554444444444444333  


Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 006828          192 MEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIKVIVKEKNAIEMQNSEQKV  271 (629)
Q Consensus       192 le~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie~l~~el~ele~~~e~l~~  271 (629)
                           ..+..+...+..++..+..++......+..+...+..+..++..+..+++.+...+..+..++..++..+..+..
T Consensus       916 -----~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~el~~L~~eleele~~l~~l~~e~~~le~~l~~l~~  990 (1184)
T 1i84_S          916 -----VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED  990 (1184)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHHHHHHHC------------------------------------------------
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 334444444444444444444444444444444444444555555555555555555555555555544444444


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006828          272 INDELEKEVNKLNEIVLALQKEEKVLCGKILELENSCSEAMDEKLEMVLEIKALLDQEREKQKRIERLIEEKDEISHRLE  351 (629)
Q Consensus       272 el~ele~ela~l~e~l~~l~~~~~~l~~~i~~le~~l~~~~~~~~~l~~ei~~l~~e~~e~~~~l~~l~~e~~~le~~i~  351 (629)
                      ++..++..+..+...+..+...+..+...+..+..++..+......+..++..+..       .+..+......+...+.
T Consensus       991 el~~lee~l~~l~~e~~~le~~i~~l~~~l~~~e~k~~~lek~~~~le~el~ele~-------~le~~e~~~~ele~~~~ 1063 (1184)
T 1i84_S          991 DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV-------RLKKEEKSRQELEKIKR 1063 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            45444444444444444444443333333333333333333333333333333333       34444444444444444


Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          352 KAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQAT  431 (629)
Q Consensus       352 el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~  431 (629)
                      .+..++..++..+.++..++..+...+..++.++..+...+..+...+..++..+..++.++..+...+......     
T Consensus      1064 ~le~el~~l~~el~el~~el~~le~~l~~le~el~~l~~~le~l~~~~~~le~~l~~Le~eie~L~eeLee~~~~----- 1138 (1184)
T 1i84_S         1064 KLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAA----- 1138 (1184)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            455555555555666666666666666666666666666666666666666666666666666665555432221     


Q ss_pred             HhhhhccccHHHHHHHHHHHHHHHHHhhhchHHhH
Q 006828          432 LERDNAWKDLDEQRKSGMDLRLKLSEMEKRFEEKV  466 (629)
Q Consensus       432 ~~~~~~~~~l~~~k~~i~~Lk~eI~~LG~vN~~AI  466 (629)
                        ...+......+...+..|+..|.++|++|...+
T Consensus      1139 --~~~le~q~~~L~~ele~L~~~Ieel~~vn~aq~ 1171 (1184)
T 1i84_S         1139 --RNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171 (1184)
T ss_dssp             -----------------------------------
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence              222233456778899999999999999986543

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=99.49  E-value=2.1e-09  Score=108.02  Aligned_cols=85  Identities=20%  Similarity=0.298  Sum_probs=43.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          336 IERLIEEKDEISHRLEKAVVVLDDKEGEIAKLLREKNDIEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQ  415 (629)
Q Consensus       336 l~~l~~e~~~le~~i~el~~el~~l~~~leel~~e~~~l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~  415 (629)
                      +..+...+..+...+..+...+..+...+..+......+...+......+..+...+..+...+..+...+.++...+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (284)
T 1c1g_A          197 IKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH  276 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333344444444444444555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHH
Q 006828          416 LVNEL  420 (629)
Q Consensus       416 l~~~l  420 (629)
                      +...|
T Consensus       277 ~~~~L  281 (284)
T 1c1g_A          277 ALNDM  281 (284)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55444

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=99.18  E-value=1.3e-10  Score=141.28  Aligned_cols=21  Identities=10%  Similarity=0.101  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHhhccc
Q 006828          504 LLEAKRNADDLRAKMESIGFN  524 (629)
Q Consensus       504 l~~~~k~i~~Lk~~I~~lg~v  524 (629)
                      ...+..++..|+..|+.+|+|
T Consensus      1146 ~~~L~~ele~L~~~Ieel~~v 1166 (1184)
T 1i84_S         1146 KRDLSEELEALKTELEDTLDT 1166 (1184)
T ss_dssp             ---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhH
Confidence            334445566666677777876

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=97.76  E-value=0.0064  Score=60.94  Aligned_cols=153  Identities=13%  Similarity=0.071  Sum_probs=95.8

Q ss_pred             HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHH
Q 006828          376 ERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYKSALDQATLERDNAWKDLDEQRKSGMDLRLKL  455 (629)
Q Consensus       376 e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk~eI  455 (629)
                      ..+..++..+..+...+..+...+..+...+.+++..+.....++..|...+..+.    + ..++..+..++..++..|
T Consensus        32 ~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~----~-~kE~~aL~kEie~~~~~i  106 (256)
T 3na7_A           32 KDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIK----S-ERELRSLNIEEDIAKERS  106 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS----S-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----C-HHHHHHHHHHHHHHHHHH
Confidence            33334444444444455555555555555555555666666666655555554332    1 356788888888888889


Q ss_pred             HHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccc----hHHHHHH
Q 006828          456 SEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIGFN----SDRALSM  531 (629)
Q Consensus       456 ~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg~v----aiee~~~  531 (629)
                      ..+........+..+..+..++.+......+...+...+.+++....   .+...+..+..+...+.+.    -...|+.
T Consensus       107 ~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~---e~~~e~~~l~~~r~~l~~~i~~~lL~~Yer  183 (256)
T 3na7_A          107 NQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVK---NIKETQQIIFKKKEDLVEKTEPKIYSFYER  183 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            88888888888888888888888888888888877777776554443   3444444444444433332    5556776


Q ss_pred             HHHHH
Q 006828          532 LKNTA  536 (629)
Q Consensus       532 ~ker~  536 (629)
                      +..++
T Consensus       184 ir~~~  188 (256)
T 3na7_A          184 IRRWA  188 (256)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            66543

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.20  E-value=0.11  Score=48.99  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=10.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          237 RLVGLEKETDDLKLKIKVIVKEKNAIE  263 (629)
Q Consensus       237 el~el~~ei~~l~~~ie~l~~el~ele  263 (629)
                      ++..+.+....+...+..+..++..++
T Consensus        50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k   76 (189)
T 2v71_A           50 QLVQAEQRNRDLQADNQRLKYEVEALK   76 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444433333333333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=97.11  E-value=0.13  Score=48.49  Aligned_cols=34  Identities=12%  Similarity=0.062  Sum_probs=16.4

Q ss_pred             hhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHH
Q 006828          135 ERENEIIALKSEVSGLMGNIENERERLSQACREK  168 (629)
Q Consensus       135 ~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~  168 (629)
                      +...++.-.+..+..+...+..++..+.....--
T Consensus         7 s~~ee~~ywk~~~~~~~q~~~~le~El~EFqesS   40 (189)
T 2v71_A            7 SLKEETAYWKELSMKYKQSFQEARDELVEFQEGS   40 (189)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555554444444444333

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=97.00  E-value=0.056  Score=48.10  Aligned_cols=77  Identities=10%  Similarity=0.112  Sum_probs=52.3

Q ss_pred             hHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 006828          120 TQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKE  196 (629)
Q Consensus       120 ~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~  196 (629)
                      .+|++...+.+..+..+..++..|...+.........+......+......+...+..-...+....+....+....
T Consensus         2 vKPLL~~~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k   78 (129)
T 2fxo_A            2 SSPLLKSAEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNK   78 (129)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            36888888888888888888888888888887777777777777777776665555444444444444443333333

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.72  E-value=0.34  Score=44.21  Aligned_cols=90  Identities=13%  Similarity=0.183  Sum_probs=40.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 006828          174 ELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNERDGDIEAFKKEKGLLGKRLVGLEKETDDLKLKIK  253 (629)
Q Consensus       174 ~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~l~~~i~~l~~~~~~l~~el~el~~ei~~l~~~ie  253 (629)
                      ........+..+...+..+..++..++..-.....+-+.+..++..+...+..........+..+..|+..++.+...+.
T Consensus        36 Rae~aE~k~~eLEeeL~~v~~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~  115 (155)
T 2efr_A           36 RAELSEGKSAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY  115 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444444444444444444444444444444444444444444444444444


Q ss_pred             HHHHHHHHHH
Q 006828          254 VIVKEKNAIE  263 (629)
Q Consensus       254 ~l~~el~ele  263 (629)
                      ........+.
T Consensus       116 ~~Kek~~~i~  125 (155)
T 2efr_A          116 AQKLKYKAIS  125 (155)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4333333333

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=96.43  E-value=0.56  Score=43.13  Aligned_cols=91  Identities=10%  Similarity=0.126  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 006828          140 IIALKSEVSGLMGNIENERERLSQACREKDLMKGELDCQVKEASRLKDRLIEMEGKERNLRSEILVLQSDYGRLKKEKNE  219 (629)
Q Consensus       140 i~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~l~~~~~~l~~l~~~l~ele~~~~~le~q~~~l~~e~~~L~~E~~~  219 (629)
                      +..|..++.++...+....+...++.+...++......+...+..+.+.+..+......|+.++..+...+..-......
T Consensus         8 i~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q   87 (168)
T 3o0z_A            8 LSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGH   87 (168)
T ss_dssp             --CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677778888887777777777777777666666666666666666666666666666666666665554443333333


Q ss_pred             HHHhHHHHHHH
Q 006828          220 RDGDIEAFKKE  230 (629)
Q Consensus       220 l~~~i~~l~~~  230 (629)
                      ..+.+.++...
T Consensus        88 ~se~~~elq~r   98 (168)
T 3o0z_A           88 DSEMIGDLQAR   98 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            33333333333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=96.22  E-value=2.1  Score=56.54  Aligned_cols=25  Identities=0%  Similarity=0.198  Sum_probs=11.2

Q ss_pred             hHHHHHHHhhHhHHHHHHHHHHHHH
Q 006828          372 NDIEERKVCQDNEISGLHKEIGELR  396 (629)
Q Consensus       372 ~~l~e~~~~~e~el~~l~~el~~l~  396 (629)
                      ..|..+...+...+..+..++..+-
T Consensus      2080 ~gL~~Ek~RW~~~~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2080 DNLNSERGRWEQQSENFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhccccHHHHHHHHHHHHHhcc
Confidence            3344444444444444444444443

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.97  E-value=2.9  Score=55.21  Aligned_cols=13  Identities=8%  Similarity=0.025  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHH
Q 006828          527 RALSMLKNTAAMV  539 (629)
Q Consensus       527 ee~~~~ker~~fl  539 (629)
                      +.|.-|..|...|
T Consensus      2399 ~~YrpvA~r~s~L 2411 (3245)
T 3vkg_A         2399 ALYNPMALSCSRV 2411 (3245)
T ss_dssp             HHSHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHH
Confidence            3455555554433

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.61  E-value=4.4  Score=48.42  Aligned_cols=13  Identities=8%  Similarity=-0.044  Sum_probs=7.7

Q ss_pred             hhhhhhhhhHHHH
Q 006828          105 VSLEIEKGLFCVF  117 (629)
Q Consensus       105 ~~~~~~~~~~~~~  117 (629)
                      .++..+++||+.+
T Consensus       840 ~aai~IQs~~Rg~  852 (1080)
T 2dfs_A          840 DATIALQALLRGY  852 (1080)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3455556677666

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.00  E-value=1.1  Score=53.54  Aligned_cols=29  Identities=24%  Similarity=0.273  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          278 KEVNKLNEIVLALQKEEKVLCGKILELEN  306 (629)
Q Consensus       278 ~ela~l~e~l~~l~~~~~~l~~~i~~le~  306 (629)
                      ..+..|+.+...+..+++.++..+...+.
T Consensus      1023 ~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1023 QLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444554444

>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A

Probab=93.80  E-value=0.81  Score=37.74  Aligned_cols=56  Identities=13%  Similarity=0.022  Sum_probs=40.0

Q ss_pred             hhHhHhhhcchhhhhhhhHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHhhhh
Q 006828          119 MTQMKEMGEGLDEEKNERENEIIALKSEVSGLMGNIENERERLSQACREKDLMKGE  174 (629)
Q Consensus       119 ~~~~~~~~~~vd~~~~~Rk~Ei~~L~eela~l~~~~~~~ke~l~~L~~~~~~l~~~  174 (629)
                      +.+|++.+.+.+..+.....++..+.+.+.........+......+..+...+...
T Consensus         2 kVKPLL~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~q   57 (89)
T 3bas_A            2 SHMPLLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGS   57 (89)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999888888888888877777777755444

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=91.08  E-value=2.6  Score=34.42  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=28.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006828          464 EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQK  502 (629)
Q Consensus       464 ~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~  502 (629)
                      .+..++..++.-.+.+.-.+-||+.++.+|.+|+.-+.+
T Consensus        46 ~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fLkk   84 (86)
T 3swk_A           46 EAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKK   84 (86)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344566666667777777888899999998888876654

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}

Probab=90.47  E-value=8.2  Score=33.51  Aligned_cols=42  Identities=19%  Similarity=0.207  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006828          383 NEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELADYK  424 (629)
Q Consensus       383 ~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~~y~  424 (629)
                      ..+--|++++..-.-.....-..+.++..+...+..++.-|.
T Consensus       119 ~TiG~LrKELEdEklK~~E~MdSFE~LkvENE~vkerl~mYR  160 (167)
T 4gkw_A          119 ETIGILRKELENEKLKAAENMDSFEKLSMENENLKEKIAHYR  160 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence            444444444444444444555566666667777666666554

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=88.79  E-value=6.9  Score=34.87  Aligned_cols=60  Identities=12%  Similarity=0.094  Sum_probs=49.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828          463 EEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG  522 (629)
Q Consensus       463 ~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg  522 (629)
                      ++..++|-..+..++.|..+.+++...+.+|+.++.+.+..+..+.+.+..|+.++..|-
T Consensus        64 LNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~  123 (138)
T 3hnw_A           64 LNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQ  123 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557788999999999999999988888888888888888888777777777777777664

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=85.81  E-value=5.9  Score=31.17  Aligned_cols=67  Identities=18%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             HHhhhchHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Q 006828          456 SEMEKRFEEKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMESIG  522 (629)
Q Consensus       456 ~~LG~vN~~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~lg  522 (629)
                      ..+|....+.|.|+.++.+-..-|.-.++||..++..|-.+.+.++..+.....-...+...|..+.
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elE   71 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELE   71 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677788888999999999999999999999999998888888887777766666666666655543

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=85.61  E-value=12  Score=30.50  Aligned_cols=74  Identities=12%  Similarity=0.173  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHhhhchHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Q 006828          448 GMDLRLKLSEMEKRFEEKVEELAKT-------RNERETLVDLRKKMESHIGLLAEEKELMQKNLLEAKRNADDLRAKMES  520 (629)
Q Consensus       448 i~~Lk~eI~~LG~vN~~AIeEyeev-------keRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l~~~~k~i~~Lk~~I~~  520 (629)
                      +..|+.+|..++..|....-+...+       +.+|+.=...+..++..+..|+..++...=....+..++..|+.+|.-
T Consensus         2 i~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~f   81 (86)
T 3swk_A            2 MRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF   81 (86)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666666665555555544       455555555555555555555555554444445555555565555544


Q ss_pred             h
Q 006828          521 I  521 (629)
Q Consensus       521 l  521 (629)
                      |
T Consensus        82 L   82 (86)
T 3swk_A           82 L   82 (86)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}

Probab=83.29  E-value=18  Score=29.96  Aligned_cols=26  Identities=15%  Similarity=0.225  Sum_probs=9.8

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006828          236 KRLVGLEKETDDLKLKIKVIVKEKNA  261 (629)
Q Consensus       236 ~el~el~~ei~~l~~~ie~l~~el~e  261 (629)
                      .++..+..+-..+...|..+..+...
T Consensus        25 ~eL~~lEke~~~l~~el~~le~E~~~   50 (96)
T 3q8t_A           25 QELEDVEKNRKVVAENLEKVQAEAER   50 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333333

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}

Probab=83.27  E-value=19  Score=30.41  Aligned_cols=20  Identities=15%  Similarity=0.174  Sum_probs=7.1

Q ss_pred             HHHHHHHHHHHHhHHHHHHH
Q 006828          228 KKEKGLLGKRLVGLEKETDD  247 (629)
Q Consensus       228 ~~~~~~l~~el~el~~ei~~  247 (629)
                      ...+..+++.+.....+++.
T Consensus        30 ~~~L~~AEeaL~~Kq~~ide   49 (110)
T 2v4h_A           30 RQQLQQAEEALVAKQELIDK   49 (110)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=82.55  E-value=18  Score=30.08  Aligned_cols=77  Identities=14%  Similarity=0.179  Sum_probs=42.5

Q ss_pred             HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q 006828          374 IEERKVCQDNEISGLHKEIGELRDVVFKLKASCRDQQDKSKQLVNELA-DYKSALDQATLERDNAWKDLDEQRKSGMDLR  452 (629)
Q Consensus       374 l~e~~~~~e~el~~l~~el~~l~~~l~~le~~~~~le~ei~~l~~~l~-~y~~~le~a~~~~~~~~~~l~~~k~~i~~Lk  452 (629)
                      +......++.++..|...+..-.......+.....++.++..+...|+ +.+.-+..+..       ....+..+...|+
T Consensus        17 le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~-------e~~~~e~kn~~L~   89 (97)
T 2eqb_B           17 LKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARK-------EKYAIEILNKRLT   89 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            344444455555556666665556666666666677777777777776 44444444321       1233445555555


Q ss_pred             HHHHH
Q 006828          453 LKLSE  457 (629)
Q Consensus       453 ~eI~~  457 (629)
                      .+|.+
T Consensus        90 ~qL~d   94 (97)
T 2eqb_B           90 EQLRE   94 (97)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            55543

>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A

Probab=81.96  E-value=27  Score=30.93  Aligned_cols=75  Identities=12%  Similarity=0.182  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHhhhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHH
Q 006828          470 AKTRNERETLVDLRKKMESHIGLLAEEKE------------LMQKNLLEAKRNADDLRAKMESIGFN----SDRALSMLK  533 (629)
Q Consensus       470 eevkeRyefL~~Q~~DLe~~~~~L~~e~~------------~l~~~l~~~~k~i~~Lk~~I~~lg~v----aiee~~~~k  533 (629)
                      ..+..+-+.|....+||..-++.|+.++.            .+.+++..+...+..+..-|...-|+    =..|+..|-
T Consensus        17 ~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~Vc   96 (141)
T 3okq_A           17 TELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVC   96 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHH
Confidence            45677888888888888888888887654            77888888888888898888888888    334999999


Q ss_pred             HHHHHHhhhhh
Q 006828          534 NTAAMVCQSEN  544 (629)
Q Consensus       534 er~~fl~~q~~  544 (629)
                      +--+||.-|.+
T Consensus        97 eEQqfl~~Qed  107 (141)
T 3okq_A           97 EEQQFLTLQEE  107 (141)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999977

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	629
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	82.32

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=82.32  E-value=5.3  Score=31.76  Aligned_cols=47  Identities=21%  Similarity=0.118  Sum_probs=27.8

Q ss_pred             hhhchH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006828          458 MEKRFE--EKVEELAKTRNERETLVDLRKKMESHIGLLAEEKELMQKNL  504 (629)
Q Consensus       458 LG~vN~--~AIeEyeevkeRyefL~~Q~~DLe~~~~~L~~e~~~l~~~l  504 (629)
                      .|||..  ...+=...++.+.+|+......|..++..+..+...+++.+
T Consensus        54 vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l  102 (107)
T d1fxka_          54 SGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI  102 (107)
T ss_dssp             ETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455542  23344455667777777777777777666666655555544