Citrus Sinensis ID: 006862

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63

MPEAPKNSYPSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQWSSNNNKATTRIEEMNGKAQTV

ccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHccccccccHHHHHHHccccccccHHHHHHHHHcccccccccccccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHccccccEEccccccEEEEEEEccccccccccEEEEccccEEEEEccccccccccccccccccccccccccEEEccccccccEEEEEEEccccEEccccccEEEEcEEEccccEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccHHHHHHHHHHHcccccccccccEEEccHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHccccccc

ccccccccccccccHcHHcHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHccccccccHHHHHHcccEEEHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccccccccccHHHcccccccccccccccHEEEcccHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccHcHHHHHccccEEEEEEEcccHHHHHHHHHHHcccccEEEccccccccEEEEEcccccccccEEEEEEcccEEEEEEEcccccccccccccccccccccccccEEEEEEEEccEEEEEEEEcccEEEEEEccEEEEEcccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHcHHHHHcEccccccccEEEEEEcccHHHHHHHHHHHccccccccccccccccHHHHHHHHHcHHHHccccccccccccccccccccccccEEHHHcccccEcc

mpeapknsypsdysldeMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLqrnglnghtdresfkktmpvityEDIQADInriangdtspilcskpisefltssgtsggerklmptIEEELERRSLLYSLLMPvmsqfipgldkgkgmYFLFIKSeaktpgglvarpvltsyykschfkerpydpytnytspnetilcpdsyQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIrtgtidsqitdpsVRDAVMKIlkpnpkladfIENECRKDCwqgiitrlwpntkyVDVIVTGTmsqyipildyysnglpLVCTMYassecyfgvnlnplckpsevsytlvptmayfeflpvhrnngvansismpkslneKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRvagfknkapqfnficrknvvlsidsdktdEVELQNAVKNAVNHLVPFDAAVSeytsyadtttvpgHYVLYWELslngttpippsvfedCCLTIEESLNSVYRqgrvcdksigpleikivepgtfDKLMDYAISLGAsinqyktprcvkfapIIELLNSrvvsnyfspkcpkwvaghkqwssnnnKATTRIEEMNGKAQTV

mpeapknsypsdysLDEMNKKKLEFIEnvtsnpdeVQKKVLSEILLRNAHVEYlqrnglnghtdresfkktmPVITYEDIQADINRIANGDTSPILCSKPISEfltssgtsggerklMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEaktpgglvarPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIrtgtidsqitdpsvrDAVMKILKPNPKLADFIENECRKDCWQGiitrlwpntkYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLvdvklgqeYELVVTTYAGLYRYRVGDVLRVAGfknkapqfnficrKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQgrvcdksigpleiKIVEPGTFDKLMDYAISLGAsinqyktprCVKFAPIIELLNSRVVSNYFSPKCPKwvaghkqwssnnnkattrieemngkaqtv

MPEAPKNSYPSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIeeelerrsllysllMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQWSSNNNKATTRIEEMNGKAQTV

*************************************KKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPIS************************RRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVA***************ELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQ**********************

********YPSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLT********RKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSI*M*****EKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLM****************RCVKFAPIIELLNSRVVSNYFSPKCPKWVAG******************NG*****

***********DYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQWSSNNNKATTRIEEMNGKAQTV

***********DYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHR******************RQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQWSSN*NKATTRIE*MNG*****

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		628	2.2.26 [Sep-21-2011]
Q9LSQ4		612	Indole-3-acetic acid-amid	yes	no	0.971	0.996	0.848	0.0
O81829		612	Indole-3-acetic acid-amid	no	no	0.971	0.996	0.844	0.0
Q8LQM5		610	Probable indole-3-acetic	yes	no	0.957	0.985	0.666	0.0
Q60EJ6		629	Probable indole-3-acetic	no	no	0.937	0.936	0.677	0.0
O82333		590	Probable indole-3-acetic	no	no	0.909	0.967	0.653	0.0
Q0D4Z6		605	Probable indole-3-acetic	no	no	0.931	0.966	0.625	0.0
A3BLS0		605	Probable indole-3-acetic	N/A	no	0.931	0.966	0.625	0.0
P0C0M2		614	Probable indole-3-acetic	no	no	0.923	0.944	0.632	0.0
O22190		595	Indole-3-acetic acid-amid	no	no	0.918	0.969	0.638	0.0
Q9LQ68		597	Indole-3-acetic acid-amid	no	no	0.909	0.956	0.609	0.0

>sp\|Q9LSQ4\|GH36_ARATH Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1	Back alignment and function desciption

 Score = 1090 bits (2820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 519/612 (84%), Positives = 563/612 (91%), Gaps = 2/612 (0%)

Query: 1   MPEAPKNSY--PSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNG 58
           MPEAPK +    SD SL E NK KL+FIE+VT+N D+VQ++VL EIL RNA VEYL+R+G
Sbjct: 1   MPEAPKIAALEVSDESLAEKNKNKLQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRHG 60

Query: 59  LNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLM 118
           L G TDRE+FK  MPV+TYEDIQ +INRIANGD S +LCS PISEFLTSSGTSGGERKLM
Sbjct: 61  LEGRTDRETFKHIMPVVTYEDIQPEINRIANGDKSQVLCSNPISEFLTSSGTSGGERKLM 120

Query: 119 PTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK 178
           PTIEEEL+RRSLLYSLLMPVM QF+PGLDKGKGMYFLFIKSE+KTPGGL ARPVLTSYYK
Sbjct: 121 PTIEEELDRRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSESKTPGGLPARPVLTSYYK 180

Query: 179 SCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAI 238
           S HFK RPYDPYTNYTSPN+TILC DSYQSMYSQ+LCGLCQ+KEVLRVGAVFASGFIRAI
Sbjct: 181 SSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAI 240

Query: 239 RFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIIT 298
           +FLEKHWP + +DIRTGT+ S+ITD SVR+AV +ILKP+PKLADF+E+ECRK  WQGIIT
Sbjct: 241 KFLEKHWPELARDIRTGTLSSEITDSSVREAVGEILKPDPKLADFVESECRKTSWQGIIT 300

Query: 299 RLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSY 358
           RLWPNTKYVDVIVTGTMSQYIP LDYYSNGLPLVCTMYASSECYFGVNL PLCKPSEVSY
Sbjct: 301 RLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSY 360

Query: 359 TLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGL 418
           TL+P MAYFEFLPVHRN+GV +SIS+PK+L EKE+QELVDLVDVKLGQEYELVVTTYAGL
Sbjct: 361 TLIPNMAYFEFLPVHRNSGVTSSISLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGL 420

Query: 419 YRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAA 478
           YRYRVGDVL VAGFKN APQF+FICRKNVVLSIDSDKTDEVELQNAVKNAV HLVPFDA+
Sbjct: 421 YRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDAS 480

Query: 479 VSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKS 538
           +SEYTSYADT+++PGHYVL+WEL LNG TPIPPSVFEDCCLTIEESLNSVYRQGRV DKS
Sbjct: 481 LSEYTSYADTSSIPGHYVLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKS 540

Query: 539 IGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCP 598
           IGPLEIK+VE GTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVV +YFSPKCP
Sbjct: 541 IGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCP 600

Query: 599 KWVAGHKQWSSN 610
           KW  GHKQW SN
Sbjct: 601 KWSPGHKQWGSN 612

Catalyzes the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. Strongly reactive with Glu, Gln, Trp, Asp, Ala, Leu, Phe, Gly, Tyr, Met, Ile and Val. Little or no product formation with His, Ser, Thr, Arg, Lys, or Cys. Also active on pyruvic and butyric acid analogs of IAA, PAA and the synthetic auxin naphthaleneacetic acid (NAA). The two chlorinated synthetic auxin herbicides 2,4-D and 3,6-dichloro-o-anisic acid (dicamba) cannot be used as substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp\|O81829\|GH35_ARATH Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1	Back alignment and function description

>sp\|Q8LQM5\|GH31_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|Q60EJ6\|GH34_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.4 OS=Oryza sativa subsp. japonica GN=GH3.4 PE=2 SV=1	Back alignment and function description

>sp\|O82333\|GH31_ARATH Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1	Back alignment and function description

>sp\|Q0D4Z6\|GH38_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1	Back alignment and function description

>sp\|A3BLS0\|GH38_ORYSI Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2	Back alignment and function description

>sp\|P0C0M2\|GH32_ORYSJ Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1	Back alignment and function description

>sp\|O22190\|GH33_ARATH Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1	Back alignment and function description

>sp\|Q9LQ68\|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		628
255586158		612	Indole-3-acetic acid-amido synthetase GH	0.972	0.998	0.888	0.0
224124160		611	GH3 family protein [Populus trichocarpa]	0.971	0.998	0.887	0.0
225461199		613	PREDICTED: indole-3-acetic acid-amido sy	0.971	0.995	0.872	0.0
224115146		611	GH3 family protein [Populus trichocarpa]	0.971	0.998	0.877	0.0
225461203		596	PREDICTED: indole-3-acetic acid-amido sy	0.933	0.983	0.887	0.0
356543199		607	PREDICTED: indole-3-acetic acid-amido sy	0.964	0.998	0.856	0.0
17978966		612	AT5g54510/F24B18_13 [Arabidopsis thalian	0.971	0.996	0.848	0.0
356514929		609	PREDICTED: indole-3-acetic acid-amido sy	0.966	0.996	0.853	0.0
15239653		612	indole-3-acetic acid-amido synthetase GH	0.971	0.996	0.848	0.0
312283481		612	unnamed protein product [Thellungiella h	0.971	0.996	0.846	0.0

>gi\|255586158\|ref\|XP_002533739.1\| Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis] gi\|223526345\|gb\|EEF28642.1\| Indole-3-acetic acid-amido synthetase GH3.6, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1142 bits (2954), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/612 (88%), Positives = 579/612 (94%), Gaps = 1/612 (0%)

Query: 1   MPEAPKNSY-PSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGL 59
           MPEAPKNS   SDY+L E N+K L+FIE+VTSNPDEVQKKVL EIL RNA VEYLQ++GL
Sbjct: 1   MPEAPKNSLISSDYNLSEKNRKTLQFIEDVTSNPDEVQKKVLEEILTRNARVEYLQKHGL 60

Query: 60  NGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMP 119
           NG+TDRESFKK MPVI YEDIQ  INRIANGDTSPILCSKPISEFLTSSGTSGGERKLMP
Sbjct: 61  NGYTDRESFKKIMPVIAYEDIQPHINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMP 120

Query: 120 TIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKS 179
           TIEEEL RRSLLYSLLMPVM+QF+PGL+KGKGMYFLFIKSEAKTPGGLVARPVLTSYYKS
Sbjct: 121 TIEEELGRRSLLYSLLMPVMNQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKS 180

Query: 180 CHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIR 239
            HFK+RP+DPYTNYTSPNETILCPDSYQSMYSQ+LCGLCQ  +VLRVGAVFASGFIRAIR
Sbjct: 181 SHFKDRPFDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQRNDVLRVGAVFASGFIRAIR 240

Query: 240 FLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITR 299
           FLEKHW L+  DIRTGT++ QITD SVR+AVMKILKP+PKLADFI  EC ++ WQGIITR
Sbjct: 241 FLEKHWQLLCNDIRTGTVNPQITDLSVREAVMKILKPDPKLADFIAAECSQESWQGIITR 300

Query: 300 LWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYT 359
           LWPNTKYVDVIVTGTMSQYIP LDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYT
Sbjct: 301 LWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYT 360

Query: 360 LVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLY 419
           L+PTMAYFEFLPVHRNNGV NSISMPKSLNEKE+QELVDLVDVKLGQEYELVVTTYAGLY
Sbjct: 361 LIPTMAYFEFLPVHRNNGVTNSISMPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAGLY 420

Query: 420 RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAV 479
           RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDA +
Sbjct: 421 RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDATL 480

Query: 480 SEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSI 539
           +EYTSYADTT++PGHYVL+WE++LNG+TPIPPS+FEDCCLTIEESLNSVYRQGRV DKSI
Sbjct: 481 AEYTSYADTTSIPGHYVLFWEITLNGSTPIPPSIFEDCCLTIEESLNSVYRQGRVSDKSI 540

Query: 540 GPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPK 599
           GPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPI+ELLNSRVVS+YFSPKCPK
Sbjct: 541 GPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIVELLNSRVVSSYFSPKCPK 600

Query: 600 WVAGHKQWSSNN 611
           WV GHKQW + N
Sbjct: 601 WVPGHKQWGNKN 612

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224124160\|ref\|XP_002319260.1\| GH3 family protein [Populus trichocarpa] gi\|222857636\|gb\|EEE95183.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225461199\|ref\|XP_002283229.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform 1 [Vitis vinifera] gi\|147866579\|emb\|CAN83696.1\| hypothetical protein VITISV_013365 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224115146\|ref\|XP_002316954.1\| GH3 family protein [Populus trichocarpa] gi\|222860019\|gb\|EEE97566.1\| GH3 family protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225461203\|ref\|XP_002283236.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356543199\|ref\|XP_003540050.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max]	Back alignment and taxonomy information

>gi\|17978966\|gb\|AAL47444.1\| AT5g54510/F24B18_13 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356514929\|ref\|XP_003526154.1\| PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max]	Back alignment and taxonomy information

>gi|15239653|ref|NP_200262.1| indole-3-acetic acid-amido synthetase GH3.6 [Arabidopsis thaliana] gi|62900334|sp|Q9LSQ4.1|GH36_ARATH RecName: Full=Indole-3-acetic acid-amido synthetase GH3.6; AltName: Full=Auxin-responsive GH3-like protein 6; Short=AtGH3-6; AltName: Full=Protein DWARF IN LIGHT 1; Short=DFL-1 gi|8885594|dbj|BAA97524.1| auxin-responsive-like protein [Arabidopsis thaliana] gi|11041726|dbj|BAB17304.1| auxin-responsive GH3 homologue [Arabidopsis thaliana] gi|59958336|gb|AAX12878.1| At5g54510 [Arabidopsis thaliana] gi|209414530|gb|ACI46505.1| At5g54510 [Arabidopsis thaliana] gi|332009121|gb|AED96504.1| indole-3-acetic acid-amido synthetase GH3.6 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|312283481\|dbj\|BAJ34606.1\| unnamed protein product [Thellungiella halophila]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		628
TAIR\|locus:2147314		612	DFL1 "DWARF IN LIGHT 1" [Arabi	0.971	0.996	0.826	1.7e-279
TAIR\|locus:2131739		612	WES1 [Arabidopsis thaliana (ta	0.971	0.996	0.823	5.9e-279
UNIPROTKB\|Q8LQM5		610	GH3.1 "Probable indole-3-aceti	0.957	0.985	0.649	1.5e-218
UNIPROTKB\|Q60EJ6		629	GH3.4 "Probable indole-3-aceti	0.977	0.976	0.638	9.6e-215
TAIR\|locus:2060500		590	GH3.1 "AT2G14960" [Arabidopsis	0.566	0.603	0.665	1e-202
UNIPROTKB\|P0C0M2		614	GH3.2 "Probable indole-3-aceti	0.921	0.942	0.619	4.2e-198
TAIR\|locus:2058588		595	GH3.3 [Arabidopsis thaliana (t	0.917	0.968	0.623	5.5e-196
TAIR\|locus:2202832		597	GH3.4 [Arabidopsis thaliana (t	0.909	0.956	0.596	1.2e-184
TAIR\|locus:2010484		609	GH3.17 [Arabidopsis thaliana (	0.918	0.947	0.550	1.1e-174
UNIPROTKB\|P0C0M3		591	GH3.11 "Probable indole-3-acet	0.925	0.983	0.529	1e-164

TAIR\|locus:2147314 DFL1 "DWARF IN LIGHT 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2686 (950.6 bits), Expect = 1.7e-279, P = 1.7e-279
 Identities = 506/612 (82%), Positives = 549/612 (89%)

Query:     1 MPEAPKNSY--PSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNG 58
             MPEAPK +    SD SL E NK KL+FIE+VT+N D+VQ++VL EIL RNA VEYL+R+G
Sbjct:     1 MPEAPKIAALEVSDESLAEKNKNKLQFIEDVTTNADDVQRRVLEEILSRNADVEYLKRHG 60

Query:    59 LNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLM 118
             L G TDRE+FK  MPV+TYEDIQ +INRIANGD S +LCS PISEFLTSSGTSGGERKLM
Sbjct:    61 LEGRTDRETFKHIMPVVTYEDIQPEINRIANGDKSQVLCSNPISEFLTSSGTSGGERKLM 120

Query:   119 PTIXXXXXXXXXXXXXXMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK 178
             PTI              MPVM QF+PGLDKGKGMYFLFIKSE+KTPGGL ARPVLTSYYK
Sbjct:   121 PTIEEELDRRSLLYSLLMPVMDQFVPGLDKGKGMYFLFIKSESKTPGGLPARPVLTSYYK 180

Query:   179 SCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAI 238
             S HFK RPYDPYTNYTSPN+TILC DSYQSMYSQ+LCGLCQ+KEVLRVGAVFASGFIRAI
Sbjct:   181 SSHFKNRPYDPYTNYTSPNQTILCSDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAI 240

Query:   239 RFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIIT 298
             +FLEKHWP + +DIRTGT+ S+ITD SVR+AV +ILKP+PKLADF+E+ECRK  WQGIIT
Sbjct:   241 KFLEKHWPELARDIRTGTLSSEITDSSVREAVGEILKPDPKLADFVESECRKTSWQGIIT 300

Query:   299 RLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSY 358
             RLWPNTKYVDVIVTGTMSQYIP LDYYSNGLPLVCTMYASSECYFGVNL PLCKPSEVSY
Sbjct:   301 RLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLRPLCKPSEVSY 360

Query:   359 TLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGL 418
             TL+P MAYFEFLPVHRN+GV +SIS+PK+L EKE+QELVDLVDVKLGQEYELVVTTYAGL
Sbjct:   361 TLIPNMAYFEFLPVHRNSGVTSSISLPKALTEKEQQELVDLVDVKLGQEYELVVTTYAGL 420

Query:   419 YRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAA 478
             YRYRVGDVL VAGFKN APQF+FICRKNVVLSIDSDKTDEVELQNAVKNAV HLVPFDA+
Sbjct:   421 YRYRVGDVLSVAGFKNNAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVTHLVPFDAS 480

Query:   479 VSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKS 538
             +SEYTSYADT+++PGHYVL+WEL LNG TPIPPSVFEDCCLTIEESLNSVYRQGRV DKS
Sbjct:   481 LSEYTSYADTSSIPGHYVLFWELCLNGNTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKS 540

Query:   539 IGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCP 598
             IGPLEIK+VE GTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVV +YFSPKCP
Sbjct:   541 IGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCP 600

Query:   599 KWVAGHKQWSSN 610
             KW  GHKQW SN
Sbjct:   601 KWSPGHKQWGSN 612

GO:0005737 "cytoplasm" evidence=ISM;ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;RCA;IMP

GO:0009734 "auxin mediated signaling pathway" evidence=RCA;IMP

GO:0009826 "unidimensional cell growth" evidence=IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010252 "auxin homeostasis" evidence=TAS

GO:0010279 "indole-3-acetic acid amido synthetase activity" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR\|locus:2131739 WES1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8LQM5 GH3.1 "Probable indole-3-acetic acid-amido synthetase GH3.1" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

UNIPROTKB\|Q60EJ6 GH3.4 "Probable indole-3-acetic acid-amido synthetase GH3.4" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2060500 GH3.1 "AT2G14960" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M2 GH3.2 "Probable indole-3-acetic acid-amido synthetase GH3.2" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

TAIR\|locus:2058588 GH3.3 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202832 GH3.4 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2010484 GH3.17 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|P0C0M3 GH3.11 "Probable indole-3-acetic acid-amido synthetase GH3.11" [Oryza sativa Japonica Group (taxid:39947)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3BLS0	GH38_ORYSI	6, ., 3, ., 2, ., -	0.6254	0.9315	0.9669	N/A	no
Q9LSQ4	GH36_ARATH	6, ., 3, ., 2, ., -	0.8480	0.9713	0.9967	yes	no
Q8LQM5	GH31_ORYSJ	6, ., 3, ., 2, ., -	0.6661	0.9570	0.9852	yes	no
O81829	GH35_ARATH	6, ., 3, ., 2, ., -	0.8447	0.9713	0.9967	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GH3-6	GH3 family protein (611 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pm.C_LG_X0918	alpha-amylase/limit dextrinase (EC-3.2.1.41) (893 aa)	•	0.510

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		628
PLN02620		612	PLN02620, PLN02620, indole-3-acetic acid-amido syn	0.0
PLN02247		606	PLN02247, PLN02247, indole-3-acetic acid-amido syn	0.0
PLN02249		597	PLN02249, PLN02249, indole-3-acetic acid-amido syn	0.0
pfam03321		513	pfam03321, GH3, GH3 auxin-responsive promoter	0.0

>gnl\|CDD\|166261 PLN02620, PLN02620, indole-3-acetic acid-amido synthetase	Back alignment and domain information

 Score = 1261 bits (3264), Expect = 0.0
 Identities = 558/612 (91%), Positives = 586/612 (95%), Gaps = 2/612 (0%)

Query: 1   MPEAPKNSY--PSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNG 58
           MPEAPKNS     DY+L E NKK L+FIE+VTSN DEVQK+VL EIL RNAHVEYLQR+G
Sbjct: 1   MPEAPKNSLLEVGDYNLAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHG 60

Query: 59  LNGHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLM 118
           LNG TDRE+FKK MPVITYEDIQ DINRIANGDTSPILCSKPISEFLTSSGTSGGERKLM
Sbjct: 61  LNGRTDRETFKKVMPVITYEDIQPDINRIANGDTSPILCSKPISEFLTSSGTSGGERKLM 120

Query: 119 PTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK 178
           PTIEEEL RRSLLYSLLMPVMSQF+PGL+KGKGMYFLFIKSEAKTPGGLVARPVLTSYYK
Sbjct: 121 PTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYK 180

Query: 179 SCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAI 238
           S HFK+RPYDPYTNYTSPNETILCPDSYQSMYSQ+LCGLCQ+KEVLRVGAVFASGFIRAI
Sbjct: 181 SSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAI 240

Query: 239 RFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIIT 298
           RFLEKHW L+ +DIRTGTIDSQITDPSVR+AVMKILKP+PKLADF+E ECRK+ WQGIIT
Sbjct: 241 RFLEKHWTLLCRDIRTGTIDSQITDPSVREAVMKILKPDPKLADFVEAECRKESWQGIIT 300

Query: 299 RLWPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSY 358
           RLWPNTKYVDVIVTGTMSQYIP LDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSY
Sbjct: 301 RLWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSY 360

Query: 359 TLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGL 418
           TL+PTMAYFEFLPVHRNNGV NSIS+PKSLNEKE+QELVDLVDVKLGQEYELVVTTYAGL
Sbjct: 361 TLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVDLVDVKLGQEYELVVTTYAGL 420

Query: 419 YRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAA 478
           YRYRVGDVLRVAGFKNKAPQF+FICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDA+
Sbjct: 421 YRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAS 480

Query: 479 VSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKS 538
           ++EYTSYADT+T+PGHYVL+WEL LNG+TPIPPSVFEDCCLTIEESLNSVYRQGRV DKS
Sbjct: 481 LTEYTSYADTSTIPGHYVLFWELCLNGSTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKS 540

Query: 539 IGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCP 598
           IGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCP
Sbjct: 541 IGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCP 600

Query: 599 KWVAGHKQWSSN 610
           KWV GHKQW SN
Sbjct: 601 KWVPGHKQWCSN 612

Length = 612

>gnl\|CDD\|165890 PLN02247, PLN02247, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|177891 PLN02249, PLN02249, indole-3-acetic acid-amido synthetase	Back alignment and domain information

>gnl\|CDD\|217492 pfam03321, GH3, GH3 auxin-responsive promoter	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		628
PLN02620		612	indole-3-acetic acid-amido synthetase	100.0
PLN02247		606	indole-3-acetic acid-amido synthetase	100.0
PLN02249		597	indole-3-acetic acid-amido synthetase	100.0
PF03321		528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	100.0
COG1541		438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.94
TIGR03335		445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.92
TIGR02155		422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.89
TIGR02304		430	aden_form_hyp probable adenylate-forming enzyme. M	99.82
PRK00174		637	acetyl-CoA synthetase; Provisional	99.28
PRK07529		632	AMP-binding domain protein; Validated	99.28
COG1021		542	EntE Peptide arylation enzymes [Secondary metaboli	99.26
TIGR02188		625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	99.25
PRK07514		504	malonyl-CoA synthase; Validated	99.24
PRK09088		488	acyl-CoA synthetase; Validated	99.22
PRK06334		539	long chain fatty acid--[acyl-carrier-protein] liga	99.22
PRK05605		573	long-chain-fatty-acid--CoA ligase; Validated	99.21
PTZ00237		647	acetyl-CoA synthetase; Provisional	99.21
PRK13295		547	cyclohexanecarboxylate-CoA ligase; Reviewed	99.18
TIGR03205		541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.17
PRK04319		570	acetyl-CoA synthetase; Provisional	99.17
PLN02574		560	4-coumarate--CoA ligase-like	99.16
PRK09274		552	peptide synthase; Provisional	99.15
PRK07788		549	acyl-CoA synthetase; Validated	99.15
PRK06060		705	acyl-CoA synthetase; Validated	99.15
PRK06155		542	crotonobetaine/carnitine-CoA ligase; Provisional	99.15
TIGR01734		502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.14
PRK07786		542	long-chain-fatty-acid--CoA ligase; Validated	99.13
PRK05677		562	long-chain-fatty-acid--CoA ligase; Validated	99.13
PRK08314		546	long-chain-fatty-acid--CoA ligase; Validated	99.12
PRK10524		629	prpE propionyl-CoA synthetase; Provisional	99.12
PRK04813		503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.11
PRK03584		655	acetoacetyl-CoA synthetase; Provisional	99.11
PRK06187		521	long-chain-fatty-acid--CoA ligase; Validated	99.1
PLN02654		666	acetate-CoA ligase	99.1
PRK06164		540	acyl-CoA synthetase; Validated	99.1
PRK07656		513	long-chain-fatty-acid--CoA ligase; Validated	99.09
PRK07867		529	acyl-CoA synthetase; Validated	99.08
PRK07470		528	acyl-CoA synthetase; Validated	99.08
PRK08316		523	acyl-CoA synthetase; Validated	99.07
PLN02246		537	4-coumarate--CoA ligase	99.07
TIGR01217		652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	99.06
PRK06145		497	acyl-CoA synthetase; Validated	99.06
PRK08974		560	long-chain-fatty-acid--CoA ligase; Validated	99.05
TIGR03208		538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	99.05
PRK12583		558	acyl-CoA synthetase; Provisional	99.05
PLN02330		546	4-coumarate--CoA ligase-like 1	99.05
PRK07638		487	acyl-CoA synthetase; Validated	99.05
TIGR01733		408	AA-adenyl-dom amino acid adenylation domain. This	99.04
PRK05852		534	acyl-CoA synthetase; Validated	99.04
PRK07059		557	Long-chain-fatty-acid--CoA ligase; Validated	99.04
TIGR02316		628	propion_prpE propionate--CoA ligase. This family c	99.03
TIGR03098		515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.02
PLN02736		651	long-chain acyl-CoA synthetase	99.02
PRK06839		496	acyl-CoA synthetase; Validated	99.0
PRK07787		471	acyl-CoA synthetase; Validated	98.99
TIGR02275		527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	98.99
PRK13388		540	acyl-CoA synthetase; Provisional	98.98
COG0365		528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	98.98
PRK08633		1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.97
PLN02860		563	o-succinylbenzoate-CoA ligase	98.96
PRK12467		3956	peptide synthase; Provisional	98.95
PRK13383		516	acyl-CoA synthetase; Provisional	98.95
PRK06710		563	long-chain-fatty-acid--CoA ligase; Validated	98.94
PRK13382		537	acyl-CoA synthetase; Provisional	98.93
PLN03051		499	acyl-activating enzyme; Provisional	98.93
PRK08751		560	putative long-chain fatty acyl CoA ligase; Provisi	98.93
PRK07768		545	long-chain-fatty-acid--CoA ligase; Validated	98.93
PRK08315		559	AMP-binding domain protein; Validated	98.93
PRK12492		562	long-chain-fatty-acid--CoA ligase; Provisional	98.93
PLN02387		696	long-chain-fatty-acid-CoA ligase family protein	98.92
TIGR03443		1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	98.92
PRK10252		1296	entF enterobactin synthase subunit F; Provisional	98.92
PLN02861		660	long-chain-fatty-acid-CoA ligase	98.92
PRK10946		536	entE enterobactin synthase subunit E; Provisional	98.91
PLN02614		666	long-chain acyl-CoA synthetase	98.91
PRK12316		5163	peptide synthase; Provisional	98.9
PRK03640		483	O-succinylbenzoic acid--CoA ligase; Provisional	98.9
PRK06188		524	acyl-CoA synthetase; Validated	98.9
PRK12406		509	long-chain-fatty-acid--CoA ligase; Provisional	98.88
PRK06087		547	short chain acyl-CoA synthetase; Reviewed	98.87
PRK12467		3956	peptide synthase; Provisional	98.86
PRK07769		631	long-chain-fatty-acid--CoA ligase; Validated	98.86
PRK08276		502	long-chain-fatty-acid--CoA ligase; Validated	98.85
PRK08043		718	bifunctional acyl-[acyl carrier protein] synthetas	98.85
PRK05851		525	long-chain-fatty-acid--[acyl-carrier-protein] liga	98.84
PRK05857		540	acyl-CoA synthetase; Validated	98.84
PLN03052		728	acetate--CoA ligase; Provisional	98.84
PRK08308		414	acyl-CoA synthetase; Validated	98.82
TIGR01923		436	menE O-succinylbenzoate-CoA ligase. This model rep	98.82
PRK08279		600	long-chain-acyl-CoA synthetase; Validated	98.81
TIGR02262		508	benz_CoA_lig benzoate-CoA ligase family. Character	98.81
COG0318		534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	98.8
PTZ00342		746	acyl-CoA synthetase; Provisional	98.8
PRK05620		576	long-chain-fatty-acid--CoA ligase; Validated	98.79
PRK06178		567	acyl-CoA synthetase; Validated	98.78
PRK07824		358	O-succinylbenzoic acid--CoA ligase; Provisional	98.78
PRK08008		517	caiC putative crotonobetaine/carnitine-CoA ligase;	98.77
PRK05691		4334	peptide synthase; Validated	98.76
PRK12316		5163	peptide synthase; Provisional	98.75
PLN02430		660	long-chain-fatty-acid-CoA ligase	98.74
PRK07008		539	long-chain-fatty-acid--CoA ligase; Validated	98.74
COG1022		613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	98.74
PRK05691		4334	peptide synthase; Validated	98.73
PRK07798		533	acyl-CoA synthetase; Validated	98.7
PRK06814		1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.69
PLN03102		579	acyl-activating enzyme; Provisional	98.67
PRK08180		614	feruloyl-CoA synthase; Reviewed	98.66
PRK09192		579	acyl-CoA synthetase; Validated	98.65
KOG1176		537	consensus Acyl-CoA synthetase [Lipid transport and	98.62
PTZ00216		700	acyl-CoA synthetase; Provisional	98.62
PRK12582		624	acyl-CoA synthetase; Provisional	98.62
KOG1177		596	consensus Long chain fatty acid acyl-CoA ligase [L	98.61
PF00501		417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	98.6
PRK06018		542	putative acyl-CoA synthetase; Provisional	98.58
PLN02479		567	acetate-CoA ligase	98.53
KOG1175		626	consensus Acyl-CoA synthetase [Lipid transport and	98.44
PRK13391		511	acyl-CoA synthetase; Provisional	98.43
PRK13390		501	acyl-CoA synthetase; Provisional	98.42
PRK07868		994	acyl-CoA synthetase; Validated	98.36
PRK09029		458	O-succinylbenzoic acid--CoA ligase; Provisional	98.35
TIGR02372		386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	98.34
PRK07445		452	O-succinylbenzoic acid--CoA ligase; Reviewed	98.33
KOG1256		691	consensus Long-chain acyl-CoA synthetases (AMP-for	98.26
PRK05850		578	acyl-CoA synthetase; Validated	98.25
PRK12476		612	putative fatty-acid--CoA ligase; Provisional	98.22
PRK08162		545	acyl-CoA synthetase; Validated	97.94
KOG1179		649	consensus Very long-chain acyl-CoA synthetase/fatt	97.89
PF04443		365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	97.77
KOG1180		678	consensus Acyl-CoA synthetase [Lipid transport and	97.35
COG1020		642	EntF Non-ribosomal peptide synthetase modules and	93.41
PTZ00297		1452	pantothenate kinase; Provisional	92.86
PF14535		96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	91.39
PRK09188		365	serine/threonine protein kinase; Provisional	80.3

>PLN02620 indole-3-acetic acid-amido synthetase	Back alignment and domain information

Probab=100.00  E-value=3.7e-149  Score=1240.80  Aligned_cols=610  Identities=91%  Similarity=1.440  Sum_probs=569.0

Q ss_pred             CCCCCCCCC-C-CCCchhhhcHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCChHHHhhCCCCCCChhhHhhhCCCCChh
Q 006862            1 MPEAPKNSY-P-SDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYE   78 (628)
Q Consensus         1 ~~~~~~~~~-~-~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i~~~edF~~~vPl~tYe   78 (628)
                      ||++|++.. . ++....+++++.++.||+.++||.++|+++|++||++|++|+|||+|||++|+++++||++|||++||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~~t~~~~~vQ~~vL~~IL~~n~~Teyg~~~~f~~i~~~~~F~~~VPv~~Ye   80 (612)
T PLN02620          1 MPEAPKNSLLEVGDYNLAEKNKKALQFIEDVTSNADEVQKRVLEEILSRNAHVEYLQRHGLNGRTDRETFKKVMPVITYE   80 (612)
T ss_pred             CCCcccccccccCCCccccchHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccChhHHhcCCCCCCCHHHHHHhCCCccHH
Confidence            788776654 2 13455667788899999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHcCCCCCcccCCCcceeecccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEcc
Q 006862           79 DIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIK  158 (628)
Q Consensus        79 dl~pyIeRi~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~~~~~~  158 (628)
                      |++|||+||++||.++|||++||++|++|||||||++|+||+|++++++++.++.++++++++++|++..||.||++|++
T Consensus        81 dl~pyI~Ri~~Ge~s~vL~~~pi~~F~~SSGTT~g~~K~IP~t~e~l~~~~~~~~~~~~~~~~~~p~l~~Gk~~~~~~~~  160 (612)
T PLN02620         81 DIQPDINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELGRRSLLYSLLMPVMSQFVPGLEKGKGMYFLFIK  160 (612)
T ss_pred             HhHHHHHHHHcCCCCCccCCCChhhhhhcCCCCCCceeeeecCHHHHHHHHHHHHHHHHHHHhhCCCcccCcEEEEEecc
Confidence            99999999999998899999999999999999988999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCceeeeccccccccccccCCCCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHH
Q 006862          159 SEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAI  238 (628)
Q Consensus       159 ~~~~t~~Gi~~g~~s~~~~~s~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~  238 (628)
                      .+.+|++|+|+|++++++|+|.+|++++.+++..|++|.++++++|..|+|||||||||+++++|..++|+|+++|++++
T Consensus       161 ~~~~T~~Gip~g~~st~~y~s~~f~~~~~~~~~~~~sP~ev~~~~D~~qs~Y~~LLcgL~~~~~v~~v~svfa~~ll~a~  240 (612)
T PLN02620        161 SEAKTPGGLVARPVLTSYYKSSHFKDRPYDPYTNYTSPNETILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAI  240 (612)
T ss_pred             cCccCCCCcccccccchhhhhhhhhhcccccccceeCcHHhccCCCHHHHHHHHHHHHhhcchhhceEEeechHHHHHHH
Confidence            99999999999999999999999999998888899999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHhccCCCCCCChhhHHHHhhhcCCCHHHHHHHHHHhhhcCccccccccCCCCceeEEEEcCCccch
Q 006862          239 RFLEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQY  318 (628)
Q Consensus       239 ~~Le~~w~~l~~dI~~Gtl~~~i~~~~~r~~l~~~l~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y  318 (628)
                      ++|+++|++||+||++|+++++++++++|.+|.+.|+|||++|++|+.+|.+.+|+||+++|||||++|+||+||+|++|
T Consensus       241 ~~Le~~w~~L~~DI~~G~ls~~itd~~~R~av~~~L~p~pelA~~i~~~c~~~~w~gii~rLWP~lk~I~~~~tGsm~~Y  320 (612)
T PLN02620        241 RFLEKHWTLLCRDIRTGTIDSQITDPSVREAVMKILKPDPKLADFVEAECRKESWQGIITRLWPNTKYVDVIVTGTMSQY  320 (612)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccCCCHHHHHHHHhhcCCCHHHHHHHHHHhccccccCcHHHhCCCCcEEEEECCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCceeccccccccccccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeee
Q 006862          319 IPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVD  398 (628)
Q Consensus       319 ~~~l~~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~  398 (628)
                      ++.|++|+||+|+++.+|+||||+||||++|.|+|++++|+|+|+++||||||+++.+.....++.+.+.++.+++++|+
T Consensus       321 ~p~L~~y~gglpl~~~~Y~ASE~~~ginl~P~~~p~~~sy~L~p~~~yFEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~  400 (612)
T PLN02620        321 IPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLIPTMAYFEFLPVHRNNGVTNSISLPKSLNEKEQQELVD  400 (612)
T ss_pred             HHHHHHHcCCCccccccccccceEEEeccCCCCCcccceeeecCCcEEEEEeeccCcccccccccccccccccccCcccc
Confidence            99999999999999999999999999999999999999999999999999999885321000000000111234577999


Q ss_pred             ccccCCCceEEEEEeeccceEeeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCce
Q 006862          399 LVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAA  478 (628)
Q Consensus       399 l~eve~G~~YeLVvTt~~GLyRYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~  478 (628)
                      ++|||+|++|||||||++||||||+||||+|+||||++|+|+|+||++.++|++|||++|++|+.||.+|.+.|.+.|++
T Consensus       401 l~ev~~G~~YelvvTt~~GLyRYrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a~~~l~~~~~~  480 (612)
T PLN02620        401 LVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAS  480 (612)
T ss_pred             HHHccCCCeEEEEEEecCceEEEecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHHHHhhcccCce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888777999


Q ss_pred             EEeEEEeecCCCCCceEEEEEEEeeCCCCCCCcchHHHHHHHHHHHhChhhHhcccCCCccCCeEEEEcCCccHHHHHHH
Q 006862          479 VSEYTSYADTTTVPGHYVLYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDY  558 (628)
Q Consensus       479 l~eft~~~d~~~~p~~Yvl~~El~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~~~l~pl~v~~V~~GtF~~l~~~  558 (628)
                      |+|||+++|.++.||||+||||+...+...++.+++++||..||++||.+|+.+|..+++||||+|++|++|||+++|++
T Consensus       481 l~dyts~~d~~~~PghYvl~~El~~~~~~~~~~~~l~~cc~~lE~~Ln~~Yr~~R~~~~sIgPLeirvv~~GtF~~l~~~  560 (612)
T PLN02620        481 LTEYTSYADTSTIPGHYVLFWELCLNGSTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDY  560 (612)
T ss_pred             eeeEEeccccCCCCCceEEEEEEecCCCCCCCHHHHHHHHHHHHHHhCHHHHHHHhcCCcCCCcEEEEeCCChHHHHHHH
Confidence            99999999999999999999999532323356779999999999999999999997777899999999999999999999


Q ss_pred             HHhcCCCCCCCCCCcccCCHhHHHHHhhccccccccCCCCCCCccccccccc
Q 006862          559 AISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQWSSN  610 (628)
Q Consensus       559 ~~~~G~~~~Q~K~Pr~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~~~~~  610 (628)
                      ++++|++.||||+|||+++++++++|+++|+++|||+++|+|.|++++||++
T Consensus       561 ~~~~G~s~~QyK~Pr~v~~~~~~~~l~~~v~~~~~s~~~~~~~~~~~~~~~~  612 (612)
T PLN02620        561 AISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVPGHKQWCSN  612 (612)
T ss_pred             HHHcCCccccccCceEecCHHHHHHHHhhhheeeccccCCCCCccccCcCCC
Confidence            9999999999999999999999999999999999999999999999999974

>PLN02247 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PLN02249 indole-3-acetic acid-amido synthetase	Back alignment and domain information

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin	Back alignment and domain information

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]	Back alignment and domain information

>TIGR03335 F390_ftsA coenzyme F390 synthetase	Back alignment and domain information

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase	Back alignment and domain information

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme	Back alignment and domain information

>PRK00174 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07529 AMP-binding domain protein; Validated	Back alignment and domain information

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase	Back alignment and domain information

>PRK07514 malonyl-CoA synthase; Validated	Back alignment and domain information

>PRK09088 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PTZ00237 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed	Back alignment and domain information

>TIGR03205 pimA dicarboxylate--CoA ligase PimA	Back alignment and domain information

>PRK04319 acetyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02574 4-coumarate--CoA ligase-like	Back alignment and domain information

>PRK09274 peptide synthase; Provisional	Back alignment and domain information

>PRK07788 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06060 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional	Back alignment and domain information

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1	Back alignment and domain information

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK10524 prpE propionyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional	Back alignment and domain information

>PRK03584 acetoacetyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PLN02654 acetate-CoA ligase	Back alignment and domain information

>PRK06164 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK07867 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07470 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08316 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN02246 4-coumarate--CoA ligase	Back alignment and domain information

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase	Back alignment and domain information

>PRK06145 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase	Back alignment and domain information

>PRK12583 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02330 4-coumarate--CoA ligase-like 1	Back alignment and domain information

>PRK07638 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01733 AA-adenyl-dom amino acid adenylation domain	Back alignment and domain information

>PRK05852 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>TIGR02316 propion_prpE propionate--CoA ligase	Back alignment and domain information

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated	Back alignment and domain information

>PLN02736 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK06839 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07787 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase	Back alignment and domain information

>PRK13388 acyl-CoA synthetase; Provisional	Back alignment and domain information

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]	Back alignment and domain information

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated	Back alignment and domain information

>PLN02860 o-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK13383 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK13382 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN03051 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional	Back alignment and domain information

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08315 AMP-binding domain protein; Validated	Back alignment and domain information

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PLN02387 long-chain-fatty-acid-CoA ligase family protein	Back alignment and domain information

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase	Back alignment and domain information

>PRK10252 entF enterobactin synthase subunit F; Provisional	Back alignment and domain information

>PLN02861 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK10946 entE enterobactin synthase subunit E; Provisional	Back alignment and domain information

>PLN02614 long-chain acyl-CoA synthetase	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK06188 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK06087 short chain acyl-CoA synthetase; Reviewed	Back alignment and domain information

>PRK12467 peptide synthase; Provisional	Back alignment and domain information

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated	Back alignment and domain information

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated	Back alignment and domain information

>PRK05857 acyl-CoA synthetase; Validated	Back alignment and domain information

>PLN03052 acetate--CoA ligase; Provisional	Back alignment and domain information

>PRK08308 acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR01923 menE O-succinylbenzoate-CoA ligase	Back alignment and domain information

>PRK08279 long-chain-acyl-CoA synthetase; Validated	Back alignment and domain information

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family	Back alignment and domain information

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PTZ00342 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>PRK06178 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK12316 peptide synthase; Provisional	Back alignment and domain information

>PLN02430 long-chain-fatty-acid-CoA ligase	Back alignment and domain information

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated	Back alignment and domain information

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	Back alignment and domain information

>PRK05691 peptide synthase; Validated	Back alignment and domain information

>PRK07798 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional	Back alignment and domain information

>PLN03102 acyl-activating enzyme; Provisional	Back alignment and domain information

>PRK08180 feruloyl-CoA synthase; Reviewed	Back alignment and domain information

>PRK09192 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PTZ00216 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK12582 acyl-CoA synthetase; Provisional	Back alignment and domain information

>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]	Back alignment and domain information

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]	Back alignment and domain information

>PRK06018 putative acyl-CoA synthetase; Provisional	Back alignment and domain information

>PLN02479 acetate-CoA ligase	Back alignment and domain information

>KOG1175 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>PRK13391 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK13390 acyl-CoA synthetase; Provisional	Back alignment and domain information

>PRK07868 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional	Back alignment and domain information

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family	Back alignment and domain information

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed	Back alignment and domain information

>KOG1256 consensus Long-chain acyl-CoA synthetases (AMP-forming) [Lipid transport and metabolism]	Back alignment and domain information

>PRK05850 acyl-CoA synthetase; Validated	Back alignment and domain information

>PRK12476 putative fatty-acid--CoA ligase; Provisional	Back alignment and domain information

>PRK08162 acyl-CoA synthetase; Validated	Back alignment and domain information

>KOG1179 consensus Very long-chain acyl-CoA synthetase/fatty acid transporter [Lipid transport and metabolism]	Back alignment and domain information

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria	Back alignment and domain information

>KOG1180 consensus Acyl-CoA synthetase [Lipid transport and metabolism]	Back alignment and domain information

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PTZ00297 pantothenate kinase; Provisional	Back alignment and domain information

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B	Back alignment and domain information

>PRK09188 serine/threonine protein kinase; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		628
4b2g_A		609	Crystal Structure Of An Indole-3-acetic Acid Amido		0.0
4ewv_A		581	Crystal Structure Of Gh3.12 In Complex With Ampcpp		1e-154
4eq4_A		581	Crystal Structure Of Seleno-Methionine Derivatized		1e-148
4epl_A		581	Crystal Structure Of Arabidopsis Thaliana Gh3.11 (J		1e-115

>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido Synthase From Vitis Vinifera Involved In Auxin Homeostasis Length = 609

Back alignment and structure

Iteration: 1

Score = 801 bits (2068), Expect = 0.0, Method: Compositional matrix adjust. Identities = 386/610 (63%), Positives = 466/610 (76%), Gaps = 10/610 (1%) Query: 1 MPEAPKNSYPSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLN 60 M P S P + E + K L+FIE +T N D VQ++VL+EIL RN EYL+R L Sbjct: 1 MAVDPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLE 60 Query: 61 GHTDRESFKKTMPVITYEDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPT 120 G T RE+FK +PVI YED+Q +I RIANGD S IL + PISEFLTSSGTS GERKLMPT Sbjct: 61 GSTVRETFKSKIPVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPT 120 Query: 121 IXXXXXXXXXXXXXXMPVMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSC 180 I MPVM+ ++PGLDKGKG+YFLF+KSE +TPGGL+ARPVLTSYYKS Sbjct: 121 IQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSE 180 Query: 181 HFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRF 240 HFK RPYDPY YTSPNE ILC DS+QSMY+Q+LCG+ + K+VLR+GAVFASG +RAIRF Sbjct: 181 HFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRF 240 Query: 241 LEKHWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRL 300 L+ +W + DIRTGT+ +ITDPSVR+ V +LKP+P+LAD + EC KD W+GIITR+ Sbjct: 241 LQLNWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRI 300 Query: 301 WPNTKYVDVIVTGTMSQYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTL 360 WPNTKY+DVIVTG M+QYIP LDYYS GLPL CTMYASSECYFG+NLNP+ KPSEVSYT+ Sbjct: 301 WPNTKYLDVIVTGAMAQYIPTLDYYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTI 360 Query: 361 VPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYR 420 +P MAYFEFLP H ++ S+P S + R LVDL V++G+EYELV+TTYAGLYR Sbjct: 361 MPNMAYFEFLP-HEHS------SIPLSRDSPPR--LVDLAHVEVGKEYELVITTYAGLYR 411 Query: 421 YRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVS 480 YRVGD+LRV GF N APQF+F+ RKNV+LSIDSDKTDE ELQ AV NA L + +V Sbjct: 412 YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVV 471 Query: 481 EYTSYADTTTVPGHYVLYWELSLNGTTPIPP-SVFEDCCLTIEESLNSVYRQGRVCDKSI 539 EYTS+ADT T+PGHYV+YWEL + + P + CCL +EESLNSVYRQGRV D SI Sbjct: 472 EYTSFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSI 531 Query: 540 GPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPK 599 GPLEI++V+ GTF++LMDYAIS GASINQYK PRCV F PI+ELL+SRVVS++FSP P Sbjct: 532 GPLEIRVVKSGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPH 591 Query: 600 WVAGHKQWSS 609 W ++ ++ Sbjct: 592 WTPARRRAAA 601

PyMOL of 4b2g

>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp Length = 581

Back alignment and structure

>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12 Length = 581

Back alignment and structure

>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In Complex With Ja-Ile Length = 581

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		628
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	1e-175
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	1e-173
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-19

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana} Length = 581	Back alignment and structure

 Score =  509 bits (1312), Expect = e-175
 Identities = 222/582 (38%), Positives = 333/582 (57%), Gaps = 23/582 (3%)

Query: 20  KKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTD--RESFKKTMPVITY 77
            + ++  + +T N  +VQK+ L EILL+N    YLQ  GLNG+     E+FK  +P++T 
Sbjct: 17  NRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTD 76

Query: 78  EDIQADINRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMP 137
            +++  I R+ +GDTSPIL   P+     SSGTS G  K +P  +E +E    L+     
Sbjct: 77  VELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFA 136

Query: 138 VMSQFIPGLDKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPN 197
             ++  P  D GK + F+F   +  + GG+      T+ Y++ +FK       +   SP+
Sbjct: 137 FRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNFKAGMKSITSPSCSPD 196

Query: 198 ETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEKHWPLVVKDIRTGTI 257
           E I  PD +Q++Y  LL G+    +V  V AVFA G + A R  E+ W  +V DI+ G +
Sbjct: 197 EVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTDIKDGVL 256

Query: 258 DSQITDPSVRDAVMKILKPNPKLADFIENEC-RKDCWQGIITRLWPNTKYVDVIVTGTMS 316
            ++IT PSVR A+ K+L PNP+LA+ I  +C     W G+I  L+PN KYV  I+TG+M 
Sbjct: 257 SNRITVPSVRTAMSKLLTPNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSME 316

Query: 317 QYIPILDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNN 376
            Y+P L +Y+  LPLV   Y SSE +   N+ P   P E ++ ++P + YFEFLPV    
Sbjct: 317 PYVPKLRHYAGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETG 376

Query: 377 GVANSISMPKSLNEKERQELVDLVDVKLGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKA 436
                         +  ++ V L  VK+G+EYE+V+T YAGLYRYR+GDV++V GF N  
Sbjct: 377 --------------EGEEKPVGLTQVKIGEEYEVVITNYAGLYRYRLGDVVKVIGFYNNT 422

Query: 437 PQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYTSYADTTTVPGHYV 496
           PQ  FICR+N++LSI+ DK  E +LQ +V++A   L      V +++SY D +T PGHY 
Sbjct: 423 PQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYA 482

Query: 497 LYWELSLNGTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLM 556
           ++WE+S          V +DCC  ++ +            K+IG LE+++V  GTF K+ 
Sbjct: 483 IFWEIS----GETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQ 538

Query: 557 DYAISLGASINQYKTPRCVK--FAPIIELLNSRVVSNYFSPK 596
           ++ + LG+S  Q+K PRCVK   A ++++L   VVS+YFS  
Sbjct: 539 EHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTA 580

PyMOL of 4epl

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A* Length = 581	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		628
4b2g_A		609	GH3-1 auxin conjugating enzyme; signaling protein,	100.0
4eql_A		581	4-substituted benzoates-glutamate ligase GH3.12; f	100.0
4epl_A		581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	100.0
3qov_A		436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.85
2y27_A		437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.83
2y4o_A		443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.83
3hgu_A		369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.5
3etc_A		580	AMP-binding protein; adenylate-forming acyl-COA sy	99.41
3e7w_A		511	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.4
2d1s_A		548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	99.38
3fce_A		512	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.37
4fuq_A		503	Malonyl COA synthetase; ANL superfamily, methylma	99.37
3ni2_A		536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	99.35
3l8c_A		521	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.33
3nyq_A		505	Malonyl-COA ligase; A/B topology ababa sandwich be	99.32
1t5h_X		504	4-chlorobenzoyl COA ligase; adenylate-forming coen	99.3
3rix_A		550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	99.27
3ivr_A		509	Putative long-chain-fatty-acid COA ligase; structu	99.25
3g7s_A		549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	99.25
1amu_A		563	GRSA, gramicidin synthetase 1; peptide synthetase,	99.25
2v7b_A		529	Benzoate-coenzyme A ligase; benzoate oxidation, be	99.25
1mdb_A		539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	99.24
3r44_A		517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	99.24
1pg4_A		652	Acetyl-COA synthetase; AMP-forming, adenylate-form	99.23
3c5e_A		570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	99.23
3kxw_A		590	Saframycin MX1 synthetase B; fatty acid AMP ligase	99.21
3rg2_A		617	Enterobactin synthase component E (ENTE), 2,3-DIH	99.2
3ite_A		562	SIDN siderophore synthetase; ligase, non-ribosomal	99.2
3o83_A		544	Peptide arylation enzyme; ligase, adenylation of 2	99.18
3tsy_A		979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.16
3ipl_A		501	2-succinylbenzoate--COA ligase; structural genomic	99.15
4gr5_A		570	Non-ribosomal peptide synthetase; MBTH-like domain	99.14
1ry2_A		663	Acetyl-coenzyme A synthetase 1, acyl-activating en	99.12
3gqw_A		576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	99.09
4dg8_A		620	PA1221; ANL superfamily, adenylation domain, pepti	99.08
4gs5_A		358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	98.99
1v25_A		541	Long-chain-fatty-acid-COA synthetase; ligase, stru	98.92
2vsq_A		1304	Surfactin synthetase subunit 3; ligase, peptidyl c	98.9
3t5a_A		480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	97.93
3lax_A		109	Phenylacetate-coenzyme A ligase; structural genomi	96.34
3gxs_A		109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	95.97

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}	Back alignment and structure

Probab=100.00  E-value=2.7e-141  Score=1190.90  Aligned_cols=595  Identities=66%  Similarity=1.118  Sum_probs=537.0

Q ss_pred             CCCCCCCCCCchhhhcHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCChHHHhhCCCCCCChhhHhhhCCCCChhhhHHH
Q 006862            4 APKNSYPSDYSLDEMNKKKLEFIENVTSNPDEVQKKVLSEILLRNAHVEYLQRNGLNGHTDRESFKKTMPVITYEDIQAD   83 (628)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygr~~gf~~i~~~edF~~~vPl~tYedl~py   83 (628)
                      .|.-+-|-+....+++++.+++||+.|+||.++|+++|++||++|++|+|||+|||++|++++||+++|||++|||++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~   83 (609)
T 4b2g_A            4 DPILSSPLGPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPE   83 (609)
T ss_dssp             ------------CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHH
T ss_pred             cccccCchhhhcccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHH
Confidence            34455566777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCCCcccCCCcceeecccccCCCcccccccCHHHHHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEccCCccC
Q 006862           84 INRIANGDTSPILCSKPISEFLTSSGTSGGERKLMPTIEEELERRSLLYSLLMPVMSQFIPGLDKGKGMYFLFIKSEAKT  163 (628)
Q Consensus        84 IeRi~~Ge~~~lL~~~pi~~f~~TSGTT~G~~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~~~~~~~~~~t  163 (628)
                      |+||++||.++|||++||.+|++|||||||++|+||+|+++++.+.+++++++.++++++|+++.||.|+|++++.+.+|
T Consensus        84 ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t  163 (609)
T 4b2g_A           84 IQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRT  163 (609)
T ss_dssp             HHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEEC
T ss_pred             HHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccC
Confidence            99999999889999999999999999999999999999999999888899999999999999889999999888888999


Q ss_pred             CCCceeeeccccccccccccCCCCCCCcccCCCcccccCCChhhHHHHHHhhhcccCccccEEeecchHHHHHHHHHHhh
Q 006862          164 PGGLVARPVLTSYYKSCHFKERPYDPYTNYTSPNETILCPDSYQSMYSQLLCGLCQNKEVLRVGAVFASGFIRAIRFLEK  243 (628)
Q Consensus       164 ~~Gi~~g~~s~~~~~s~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~Ll~~L~~~~~v~~i~a~fa~~ll~~~~~Le~  243 (628)
                      ++|+++|++|+.+++|.+|+++|.+|+..|++|.+++.++|..|+|||||||||.++++|++|+++|++++++++++|++
T Consensus       164 ~~Gi~~g~~s~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~  243 (609)
T 4b2g_A          164 PGGLLARPVLTSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQL  243 (609)
T ss_dssp             TTSCEEECHHHHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CCCcccccchhhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhccCCCCCCChhhHHHHhhhcCCCHHHHHHHHHHhhhcCccccccccCCCCceeEEEEcCCccchHHHHH
Q 006862          244 HWPLVVKDIRTGTIDSQITDPSVRDAVMKILKPNPKLADFIENECRKDCWQGIITRLWPNTKYVDVIVTGTMSQYIPILD  323 (628)
Q Consensus       244 ~w~~l~~dI~~Gtl~~~i~~~~~r~~l~~~l~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~  323 (628)
                      +|++||+||++|+++++|+++++|+++.++|+|+|++|++|+++|.+.+|.|++.+|||||++|+||++|+|++|+++|+
T Consensus       244 ~Weel~~dI~~gtl~~~it~~~~r~a~~~~lsp~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~  323 (609)
T 4b2g_A          244 NWHQLTHDIRTGTLSPKITDPSVRNCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLD  323 (609)
T ss_dssp             HHHHHHHHHHHTCCCTTCCCHHHHHHTTTTCCCCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHH
T ss_pred             HHHHHHHHHHhccCCcCCCCHHHHHHHhcCCCcCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999889999999999999999999999999999999


Q ss_pred             hhcCCCceeccccccccccccccCCCCCCCCCCceeecCCceEEEEEeCCCCCCCcccCCCCccccccccceeeeccccC
Q 006862          324 YYSNGLPLVCTMYASSECYFGVNLNPLCKPSEVSYTLVPTMAYFEFLPVHRNNGVANSISMPKSLNEKERQELVDLVDVK  403 (628)
Q Consensus       324 ~~~~g~p~~~~~Y~aSEg~~gi~~~~~~~p~~~~~~l~~~~~~fEFip~~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve  403 (628)
                      +++|++|+++.+|+||||+||+|++|.|+|+..+|+|+|+++||||||+++.+..         ..+.+++++|+++|||
T Consensus       324 ~~~g~~p~~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~---------~~~~~~~~~v~l~eVe  394 (609)
T 4b2g_A          324 YYSGGLPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP---------LSRDSPPRLVDLAHVE  394 (609)
T ss_dssp             HHHTSCCEECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC---------CCSSSCCCCEEGGGCC
T ss_pred             HHcCCCccccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc---------cccCCCCccccHhHcC
Confidence            9999999999999999999999999999988899999999999999999864100         0012458899999999


Q ss_pred             CCceEEEEEeeccceEeeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHHHHHHHHHHHHhhcCCCCceEEeEE
Q 006862          404 LGQEYELVVTTYAGLYRYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEVELQNAVKNAVNHLVPFDAAVSEYT  483 (628)
Q Consensus       404 ~G~~YeLVvTt~~GLyRYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~~v~~av~~a~~~l~~~g~~l~eft  483 (628)
                      +|++|||||||++||||||+||+|+|+|||+++|+|+|+||.+++||++|||++|++|++||.+|++.|+++|+.|.|||
T Consensus       395 ~G~~YelViTt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft  474 (609)
T 4b2g_A          395 VGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYT  474 (609)
T ss_dssp             TTCEEEEEEECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEE
T ss_pred             CCCeEEEehhhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888999999999


Q ss_pred             EeecCCCCCceEEEEEEEeeC-CCCCCCcchHHHHHHHHHHHhChhhHhcccCCCccCCeEEEEcCCccHHHHHHHHHhc
Q 006862          484 SYADTTTVPGHYVLYWELSLN-GTTPIPPSVFEDCCLTIEESLNSVYRQGRVCDKSIGPLEIKIVEPGTFDKLMDYAISL  562 (628)
Q Consensus       484 ~~~d~~~~p~~Yvl~~El~~~-~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~~~l~pl~v~~V~~GtF~~l~~~~~~~  562 (628)
                      +++|.++.||||++|||+++. +...++++++++||..||++||++|+.+|.++++|+||+|++|++|+|++||++++++
T Consensus       475 ~~~d~~~~p~Hyv~~wEl~~~~~~~~~~~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~  554 (609)
T 4b2g_A          475 SFADTKTIPGHYVIYWELLVKDSANSPSDELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISR  554 (609)
T ss_dssp             EEEECSSSSCEEEEEEEEEESCGGGCCCHHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC--------
T ss_pred             EecCCCCCCCcEEEEEEEecccccCCCCHHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhC
Confidence            999988899999999999752 1233466899999999999999999999977789999999999999999999999999


Q ss_pred             CCCCCCCCCCcccCCHhHHHHHhhccccccccCCCCCCCcccccc
Q 006862          563 GASINQYKTPRCVKFAPIIELLNSRVVSNYFSPKCPKWVAGHKQW  607 (628)
Q Consensus       563 G~~~~Q~K~Pr~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~~  607 (628)
                      |+++||||+|||+++++++++|+++||++|||+++|+|.|.++++
T Consensus       555 G~~~gQ~K~PR~~~~~~~~~~L~~~v~~~~~s~~~~~~~~~~~~~  599 (609)
T 4b2g_A          555 GASINQYKVPRCVNFTPIMELLDSRVVSSHFSPALPHWTPARRRA  599 (609)
T ss_dssp             --------CCSSCC--CCHHHHHTTEEEEEECCSCCCCCSCCC--
T ss_pred             CCCCCCcCCCcccCCHHHHHHHHhcccccccCCCCCCCCcccchh
Confidence            999999999999999999999999999999999999999987765

PyMOL of 4b2g

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*	Back alignment and structure

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}	Back alignment and structure

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*	Back alignment and structure

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*	Back alignment and structure

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}	Back alignment and structure

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*	Back alignment and structure

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}	Back alignment and structure

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*	Back alignment and structure

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*	Back alignment and structure

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*	Back alignment and structure

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*	Back alignment and structure

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*	Back alignment and structure

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*	Back alignment and structure

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*	Back alignment and structure

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*	Back alignment and structure

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A	Back alignment and structure

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0	Back alignment and structure

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1	Back alignment and structure

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}	Back alignment and structure

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A	Back alignment and structure

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A	Back alignment and structure

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*	Back alignment and structure

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*	Back alignment and structure

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*	Back alignment and structure

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}	Back alignment and structure

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}	Back alignment and structure

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*	Back alignment and structure

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}	Back alignment and structure

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}	Back alignment and structure

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A	Back alignment and structure

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1	Back alignment and structure

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*	Back alignment and structure

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}	Back alignment and structure

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*	Back alignment and structure

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}	Back alignment and structure

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A	Back alignment and structure

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		628
d1pg4a_		643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	99.25
d1lcia_		541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	99.13
d1amua_		514	Phenylalanine activating domain of gramicidin synt	99.08
d1ry2a_		640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	98.85
d1mdba_		536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	98.54
d1v25a_		534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	98.52
d3cw9a1		503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	98.45

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}	Back information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=99.25  E-value=2.2e-10  Score=128.25  Aligned_cols=110  Identities=17%  Similarity=0.232  Sum_probs=72.7

Q ss_pred             ccCCCceEEEEEeec-----cceE----------------eeeeCCEEEEecccCCCCEEEEeeecCceEeccceeccHH
Q 006862          401 DVKLGQEYELVVTTY-----AGLY----------------RYRVGDVLRVAGFKNKAPQFNFICRKNVVLSIDSDKTDEV  459 (628)
Q Consensus       401 eve~G~~YeLVvTt~-----~GLy----------------RYr~GDvv~v~gf~~~~P~~~f~gR~~~~l~i~gek~~e~  459 (628)
                      +++.|+.+||+|+..     .|+|                -|+|||+++++.    .-.+.|+||.++++++.|+++...
T Consensus       451 ~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~TGDl~~~d~----dG~l~i~GR~dd~ik~~G~ri~p~  526 (643)
T d1pg4a_         451 PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DGYYWITGRVDDVLNVSGHRLGTA  526 (643)
T ss_dssp             BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TSCEEEEEESSSEEEETTEEEEHH
T ss_pred             CCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeEEcCCEEEECC----CceEEEecccccEEEECCEEECHH
Confidence            467899999999752     2333                188999999983    457999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCCceEEeEEEe--ecCCCCCc-eEEEEEEEeeCCCCCCCcchHHHHHHHHHHHhC
Q 006862          460 ELQNAVKNAVNHLVPFDAAVSEYTSY--ADTTTVPG-HYVLYWELSLNGTTPIPPSVFEDCCLTIEESLN  526 (628)
Q Consensus       460 ~v~~av~~a~~~l~~~g~~l~eft~~--~d~~~~p~-~Yvl~~El~~~~~~~~~~~~l~~~~~~ld~~Ln  526 (628)
                      +|+++|.+.      .+  |.|-+++  .|.  ..| .-+.|+.+..  +...+++...++.+.+.+.|.
T Consensus       527 eIE~~l~~~------p~--V~eaaVvg~~d~--~~ge~~~a~Vv~~~--~~~~~~~~~~~i~~~~~~~L~  584 (643)
T d1pg4a_         527 EIESALVAH------PK--IAEAAVVGIPHA--IKGQAIYAYVTLNH--GEEPSPELYAEVRNWVRKEIG  584 (643)
T ss_dssp             HHHHHHHHS------TT--EEEEEEEEEEET--TTEEEEEEEEEECT--TCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhC------CC--cceEEEEEEECC--CCCeEEEEEEEECC--CCCCCHHHHHHHHHHHHhhCC
Confidence            999999763      22  4454443  222  222 2345666642  233344444445455555553

PyMOL of d1pg4a_

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}	Back information, alignment and structure

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}	Back information, alignment and structure

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}	Back information, alignment and structure