Citrus Sinensis ID: 006883

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------
MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSKDTLLQEEVNECKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
ccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHccccHHHHHHHHHHHcccccccHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHccccccccccccccccccEEEEccccEEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccccccHHHHccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHHccccEEEcccccHHHHHHHHHHHcccccccccccccEEEEEEEEcccHHHHHHHHcccccccEEEEcccccccHHHHHccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccEEccccEEEccccccccccccccccccEEEEEEcccEEEEEEEEEEEEEc
ccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEcccEEEEEEEEEEEcccccccEEEEEEEEccccccEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHccccccccEEEEEEEccccccHccccccccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHccccHccccccHccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEccccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccEEEEEcccccHHHHHHHHHHHHcccHHHccEEEEEEEEEEEEEccHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHccccccccccHHHccccccEEEEccHHHHHHHHcccccccEEEEEEEEEEcccEEEEcccccccccccccccEEEEcEEEEEcccccEEEcccEEEcccccccccccccEEEEcEEEEccHHHEEEEEEEEEEEEEc
MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEEnkksvgskkrgrecdetdsngsqkVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNhaeqsdskdTLLQEEVNECKDEKIVKATKKgaavldpwlpehikISYHVFQKDNDIYDAMLNqtnvgdnnnkFYVIQLLEsdgggeymvynrwgrvgmkgqdkifgpynlqdtAINEFEQKFFAKTknhwsnrrqftsypkcytwlemdysanqkeesvvhekpnstiniqprntklepCVAKFISLICNISMMKQLMMEIGynanklplgklskstilKGYDVLKRIadvihppdrrkleelsgefytviphdfgfkkmrdfVIDTPQKLKLKLEMVEALGEIEVATKlleddteiqadplyshyqrlhcqltplevdSLEFSLIANYLLNthakthsaysvDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGsrltnwtgilsqglriappeapatgymfgkgvyfadmfsksanycyaspsatAGVLLLCEVALGDMSELLYanydadklpdgklstkgvgqtapdpleaetledgvivplgkpkeqlnskghllyneyIVYSVDQIRMRYVVQVNFKYK
MASNLKVDQLRAKLaqrglstagtkAILVQRleeaveeenkksvgskkrgrecdetdsngsqkvksiESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNhaeqsdskdtllqEEVNECKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAktknhwsnrrqfTSYPKCYTWLEMDYSANQKEesvvhekpnstiniqprntklepCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRiadvihppdrrkleelsGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHakthsaysvdIVQIFRVEREGETErfrkqfsnsknrmllWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGkpkeqlnskghLLYNEYIVYSVDQIRMRYVVQVNFKYK
MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNGSQKVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSKDTLLQEEVNECKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
****************************************************************************************************************************KIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYS**********************NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREG************KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDAD***************************GVIVPL******LNSKGHLLYNEYIVYSVDQIRMRYVVQVNFK**
****LKV**LRAKLAQ*GLSTAGTKAILVQRL******************************************************************************DTLLQEEVNECKDEKIVKATK*********LPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEES*****************KLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVA**************LYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLE*****************************KVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSKDTLLQEEVNECKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSAN***********NSTINIQPRNTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
*******DQLR*KLAQRGLSTAGTKAILVQRLEEAVEEE*************************KSI***GQMGVKQLREQADLRGL************************************EKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSAN********************NTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
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MASNLKVDQLRAKLAQRGLSTAGTKAILxxxxxxxxxxxxxxxxxxxxxGRECDETDSNGSQKVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSKDTLLQEEVNECKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query627 2.2.26 [Sep-21-2011]
Q11207637 Poly [ADP-ribose] polymer yes no 0.996 0.981 0.652 0.0
O50017653 Poly [ADP-ribose] polymer N/A no 0.988 0.949 0.598 0.0
Q5Z8Q9660 Poly [ADP-ribose] polymer yes no 0.988 0.939 0.587 0.0
Q0JMY1605 Poly [ADP-ribose] polymer no no 0.759 0.786 0.631 0.0
O88554559 Poly [ADP-ribose] polymer yes no 0.763 0.856 0.473 1e-123
Q9UGN5583 Poly [ADP-ribose] polymer yes no 0.776 0.835 0.478 1e-122
P270081014 Poly [ADP-ribose] polymer no no 0.805 0.498 0.418 1e-105
P31669998 Poly [ADP-ribose] polymer N/A no 0.792 0.497 0.428 1e-105
P098741014 Poly [ADP-ribose] polymer no no 0.797 0.493 0.420 1e-104
Q9R1521013 Poly [ADP-ribose] polymer no no 0.805 0.498 0.416 1e-104
>sp|Q11207|PARP2_ARATH Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana GN=PARP2 PE=2 SV=1 Back     alignment and function desciption
 Score =  833 bits (2152), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/638 (65%), Positives = 495/638 (77%), Gaps = 13/638 (2%)

Query: 1   MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNG 60
           MA+ LKVD+LR KLA+RGLST G KA+LV+RLEEA+ E+ KK     KR R     D+  
Sbjct: 1   MANKLKVDELRLKLAERGLSTTGVKAVLVERLEEAIAEDTKKEESKSKRKRNS-SNDTYE 59

Query: 61  SQKVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSKDTLLQEEVNE 120
           S K+ +I  F  M VK+LRE+A  RGL   GTKK+LLERLCN A    +         +E
Sbjct: 60  SNKLIAIGEFRGMIVKELREEAIKRGLDTTGTKKDLLERLCNDANNVSNAPVKSSNGTDE 119

Query: 121 CKDEK-----------IVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVG 169
            +D+            IV ATKKGAAVLD W+P+ IK  YHV Q+ +D+YDA+LNQTNV 
Sbjct: 120 AEDDNNGFEEEKKEEKIVTATKKGAAVLDQWIPDEIKSQYHVLQRGDDVYDAILNQTNVR 179

Query: 170 DNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTK 229
           DNNNKF+V+Q+LESD    YMVY RWGRVG+KGQ K+ GPY+  D AI  F  KF  KTK
Sbjct: 180 DNNNKFFVLQVLESDSKKTYMVYTRWGRVGVKGQSKLDGPYDSWDRAIEIFTNKFNDKTK 239

Query: 230 NHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISL 289
           N+WS+R++F  +PK YTWLEMDY   + +  V ++ P+S+  ++P  +KL+  VAKFISL
Sbjct: 240 NYWSDRKEFIPHPKSYTWLEMDYGKEENDSPVNNDIPSSSSEVKPEQSKLDTRVAKFISL 299

Query: 290 ICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEF 349
           ICN+SMM Q MMEIGYNANKLPLGK+SKSTI KGY+VLKRI++VI   DR +LEELSGEF
Sbjct: 300 ICNVSMMAQHMMEIGYNANKLPLGKISKSTISKGYEVLKRISEVIDRYDRTRLEELSGEF 359

Query: 350 YTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQ 409
           YTVIPHDFGFKKM  FVIDTPQKLK K+EMVEALGEIE+ATKLL  D  +Q DPLY HYQ
Sbjct: 360 YTVIPHDFGFKKMSQFVIDTPQKLKQKIEMVEALGEIELATKLLSVDPGLQDDPLYYHYQ 419

Query: 410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNS 469
           +L+C LTP+  DS EFS++ANY+ NTHAKTHS Y+V+I Q+FR  R  E +RF +QFS+S
Sbjct: 420 QLNCGLTPVGNDSEEFSMVANYMENTHAKTHSGYTVEIAQLFRASRAVEADRF-QQFSSS 478

Query: 470 KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSA 529
           KNRMLLWHGSRLTNW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCYA+  A
Sbjct: 479 KNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYANTGA 538

Query: 530 TAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLG 589
             GVLLLCEVALGDM+ELLY++Y+AD LP GKLSTKGVG+TAP+P EA+TLEDGV+VPLG
Sbjct: 539 NDGVLLLCEVALGDMNELLYSDYNADNLPPGKLSTKGVGKTAPNPSEAQTLEDGVVVPLG 598

Query: 590 KPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627
           KP E+  SKG LLYNEYIVY+V+QI+MRYV+QV F YK
Sbjct: 599 KPVERSCSKGMLLYNEYIVYNVEQIKMRYVIQVKFNYK 636
Involved in the base excision repair (BER) pathway, by catalyzing the poly(ADP-ribosyl)ation of a limited number of acceptor proteins involved in chromatin architecture and in DNA metabolism. This modification follows DNA damages and appears as an obligatory step in a detection/signaling pathway leading to the reparation of DNA strand breaks.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 3EC: 0
>sp|O50017|PARP2_MAIZE Poly [ADP-ribose] polymerase 2 OS=Zea mays GN=PARP2 PE=2 SV=1 Back     alignment and function description
>sp|Q5Z8Q9|PRP2A_ORYSJ Poly [ADP-ribose] polymerase 2-A OS=Oryza sativa subsp. japonica GN=PARP2-A PE=3 SV=2 Back     alignment and function description
>sp|Q0JMY1|PRP2B_ORYSJ Poly [ADP-ribose] polymerase 2-B OS=Oryza sativa subsp. japonica GN=PARP2-B PE=3 SV=2 Back     alignment and function description
>sp|O88554|PARP2_MOUSE Poly [ADP-ribose] polymerase 2 OS=Mus musculus GN=Parp2 PE=1 SV=3 Back     alignment and function description
>sp|Q9UGN5|PARP2_HUMAN Poly [ADP-ribose] polymerase 2 OS=Homo sapiens GN=PARP2 PE=1 SV=2 Back     alignment and function description
>sp|P27008|PARP1_RAT Poly [ADP-ribose] polymerase 1 OS=Rattus norvegicus GN=Parp1 PE=1 SV=4 Back     alignment and function description
>sp|P31669|PARP1_XENLA Poly [ADP-ribose] polymerase 1 (Fragment) OS=Xenopus laevis GN=parp1 PE=2 SV=1 Back     alignment and function description
>sp|P09874|PARP1_HUMAN Poly [ADP-ribose] polymerase 1 OS=Homo sapiens GN=PARP1 PE=1 SV=4 Back     alignment and function description
>sp|Q9R152|PARP1_CRIGR Poly [ADP-ribose] polymerase 1 OS=Cricetulus griseus GN=PARP1 PE=2 SV=3 Back     alignment and function description

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query627
TAIR|locus:2005523637 PARP2 "poly(ADP-ribose) polyme 0.996 0.981 0.661 1.2e-221
UNIPROTKB|F1S8F9567 PARP2 "Uncharacterized protein 0.795 0.880 0.471 5.4e-118
UNIPROTKB|Q9UGN5583 PARP2 "Poly [ADP-ribose] polym 0.784 0.843 0.479 6.9e-118
UNIPROTKB|E2RHY6569 PARP2 "Uncharacterized protein 0.786 0.866 0.480 2.3e-117
UNIPROTKB|E1BFH8567 LOC100850228 "Uncharacterized 0.826 0.913 0.456 6.2e-117
UNIPROTKB|G3N186580 LOC100850228 "Uncharacterized 0.835 0.903 0.456 2.1e-116
MGI|MGI:1341112559 Parp2 "poly (ADP-ribose) polym 0.795 0.892 0.466 8.2e-115
ZFIN|ZDB-GENE-031113-6649 parp2 "poly (ADP-ribose) polym 0.889 0.859 0.436 8.2e-115
RGD|1310568558 Parp2 "poly (ADP-ribose) polym 0.786 0.883 0.463 1.7e-114
UNIPROTKB|G3V167531 PARP2 "Poly [ADP-ribose] polym 0.712 0.841 0.480 2.7e-107
TAIR|locus:2005523 PARP2 "poly(ADP-ribose) polymerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2140 (758.4 bits), Expect = 1.2e-221, P = 1.2e-221
 Identities = 422/638 (66%), Positives = 499/638 (78%)

Query:     1 MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENKKSVGSKKRGRECDETDSNG 60
             MA+ LKVD+LR KLA+RGLST G KA+LV+RLEEA+ E+ KK     KR R     D+  
Sbjct:     1 MANKLKVDELRLKLAERGLSTTGVKAVLVERLEEAIAEDTKKEESKSKRKRN-SSNDTYE 59

Query:    61 SQKVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQ------SDSKDTLL 114
             S K+ +I  F  M VK+LRE+A  RGL   GTKK+LLERLCN A          S  T  
Sbjct:    60 SNKLIAIGEFRGMIVKELREEAIKRGLDTTGTKKDLLERLCNDANNVSNAPVKSSNGTDE 119

Query:   115 QEEVN-----ECKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVG 169
              E+ N     E K+EKIV ATKKGAAVLD W+P+ IK  YHV Q+ +D+YDA+LNQTNV 
Sbjct:   120 AEDDNNGFEEEKKEEKIVTATKKGAAVLDQWIPDEIKSQYHVLQRGDDVYDAILNQTNVR 179

Query:   170 DNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTK 229
             DNNNKF+V+Q+LESD    YMVY RWGRVG+KGQ K+ GPY+  D AI  F  KF  KTK
Sbjct:   180 DNNNKFFVLQVLESDSKKTYMVYTRWGRVGVKGQSKLDGPYDSWDRAIEIFTNKFNDKTK 239

Query:   230 NHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISL 289
             N+WS+R++F  +PK YTWLEMDY   + +  V ++ P+S+  ++P  +KL+  VAKFISL
Sbjct:   240 NYWSDRKEFIPHPKSYTWLEMDYGKEENDSPVNNDIPSSSSEVKPEQSKLDTRVAKFISL 299

Query:   290 ICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEF 349
             ICN+SMM Q MMEIGYNANKLPLGK+SKSTI KGY+VLKRI++VI   DR +LEELSGEF
Sbjct:   300 ICNVSMMAQHMMEIGYNANKLPLGKISKSTISKGYEVLKRISEVIDRYDRTRLEELSGEF 359

Query:   350 YTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQADPLYSHYQ 409
             YTVIPHDFGFKKM  FVIDTPQKLK K+EMVEALGEIE+ATKLL  D  +Q DPLY HYQ
Sbjct:   360 YTVIPHDFGFKKMSQFVIDTPQKLKQKIEMVEALGEIELATKLLSVDPGLQDDPLYYHYQ 419

Query:   410 RLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNS 469
             +L+C LTP+  DS EFS++ANY+ NTHAKTHS Y+V+I Q+FR  R  E +RF+ QFS+S
Sbjct:   420 QLNCGLTPVGNDSEEFSMVANYMENTHAKTHSGYTVEIAQLFRASRAVEADRFQ-QFSSS 478

Query:   470 KNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSA 529
             KNRMLLWHGSRLTNW GILSQGLRIAPPEAP TGYMFGKGVYFADMFSKSANYCYA+  A
Sbjct:   479 KNRMLLWHGSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYANTGA 538

Query:   530 TAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLG 589
               GVLLLCEVALGDM+ELLY++Y+AD LP GKLSTKGVG+TAP+P EA+TLEDGV+VPLG
Sbjct:   539 NDGVLLLCEVALGDMNELLYSDYNADNLPPGKLSTKGVGKTAPNPSEAQTLEDGVVVPLG 598

Query:   590 KPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627
             KP E+  SKG LLYNEYIVY+V+QI+MRYV+QV F YK
Sbjct:   599 KPVERSCSKGMLLYNEYIVYNVEQIKMRYVIQVKFNYK 636
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0006471 "protein ADP-ribosylation" evidence=IEA;ISS
GO:0006302 "double-strand break repair" evidence=RCA
GO:0010332 "response to gamma radiation" evidence=RCA
UNIPROTKB|F1S8F9 PARP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UGN5 PARP2 "Poly [ADP-ribose] polymerase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHY6 PARP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BFH8 LOC100850228 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3N186 LOC100850228 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1341112 Parp2 "poly (ADP-ribose) polymerase family, member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-031113-6 parp2 "poly (ADP-ribose) polymerase family, member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310568 Parp2 "poly (ADP-ribose) polymerase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|G3V167 PARP2 "Poly [ADP-ribose] polymerase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5Z8Q9PRP2A_ORYSJ2, ., 4, ., 2, ., 3, 00.58790.98880.9393yesno
Q11207PARP2_ARATH2, ., 4, ., 2, ., 3, 00.65200.99680.9811yesno
O50017PARP2_MAIZE2, ., 4, ., 2, ., 3, 00.59870.98880.9494N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.976
3rd Layer2.4.2.300.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00140728
annotation not avaliable (641 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query627
PLN03124643 PLN03124, PLN03124, poly [ADP-ribose] polymerase; 0.0
cd01437347 cd01437, parp_like, Poly(ADP-ribose) polymerase (p 1e-177
PLN03123981 PLN03123, PLN03123, poly [ADP-ribose] polymerase; 1e-138
pfam00644206 pfam00644, PARP, Poly(ADP-ribose) polymerase catal 7e-96
PLN03122815 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; 1e-52
pfam02877130 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, 8e-52
cd08002100 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ri 9e-49
cd08003103 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ri 8e-41
cd07997102 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) 2e-38
smart0077384 smart00773, WGR, Proposed nucleic acid binding dom 2e-27
pfam0540683 pfam05406, WGR, WGR domain 3e-27
cd08001104 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ri 2e-19
cd01341137 cd01341, ADP_ribosyl, ADP_ribosylating enzymes cat 1e-16
pfam0203735 pfam02037, SAP, SAP domain 5e-09
smart0051335 smart00513, SAP, Putative DNA-binding (bihelical) 1e-06
cd01439121 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose 8e-05
cd0799473 cd07994, WGR, WGR domain 8e-05
pfam0203735 pfam02037, SAP, SAP domain 2e-04
cd01438223 cd01438, tankyrase_like, Tankyrases interact with 2e-04
smart0051335 smart00513, SAP, Putative DNA-binding (bihelical) 3e-04
cd0799674 cd07996, WGR_MMR_like, WGR domain of molybdate met 6e-04
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information 
 Score = 1012 bits (2617), Expect = 0.0
 Identities = 427/645 (66%), Positives = 506/645 (78%), Gaps = 22/645 (3%)

Query: 1   MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK---------KSVGSKKRGR 51
           MA+ LKVD+LRA LA+RGL T G KA LV+RL++A+ E+ K          +   K+R R
Sbjct: 1   MANKLKVDELRAALAKRGLDTTGLKAALVRRLDDAIAEDAKTASKSGTKSSAGRKKRRER 60

Query: 52  ECDETDSNGSQKVKSIESFGQMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSKD 111
           + D  D   S K  +I+    M V++LRE A  RGL+  G KK+LLERLC   E      
Sbjct: 61  QDDGDDEPVSPKRIAIDEVKGMTVRELREAASERGLATTGRKKDLLERLCAALESDVKVG 120

Query: 112 TLLQEEVNE---------CKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAM 162
           +      +E          K+EKIV ATKKG AVLD WLP+HIK +YHV ++ +D+YDAM
Sbjct: 121 SANGTGEDEKEKGGDEEREKEEKIVTATKKGRAVLDQWLPDHIKSNYHVLEEGDDVYDAM 180

Query: 163 LNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQ 222
           LNQTNVGDNNNKFYV+Q+LESD G +YMVY RWGRVG+KGQDK+ GPY+ ++ AI EFE+
Sbjct: 181 LNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVKGQDKLHGPYDSREPAIREFEK 240

Query: 223 KFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPC 282
           KF+ KTKNHWS+R+ F S+PK YTWLEMDY   + EE    +KP+ +   + + +KL+P 
Sbjct: 241 KFYDKTKNHWSDRKNFISHPKKYTWLEMDY---EDEEESKKDKPSVSSEDKNKQSKLDPR 297

Query: 283 VAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKL 342
           VA+FISLIC++SMMKQ MMEIGYNA KLPLGKLSKSTILKGY+VLKRIA+VI   DR  L
Sbjct: 298 VAQFISLICDVSMMKQQMMEIGYNARKLPLGKLSKSTILKGYEVLKRIAEVISRSDRETL 357

Query: 343 EELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQAD 402
           EELSGEFYTVIPHDFGFKKMR F IDTPQKLK KLEMVEALGEIE+ATKLL+DD   Q D
Sbjct: 358 EELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEALGEIEIATKLLKDDIGEQDD 417

Query: 403 PLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERF 462
           PLY+HY+RL+C+L PL+ DS EFS+IA YL NTH +THS Y+++IVQIF+V REGE ERF
Sbjct: 418 PLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSREGEDERF 477

Query: 463 RKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANY 522
           +K FS++KNRMLLWHGSRLTNWTGILSQGLRIAPPEAP+TGYMFGKGVYFADMFSKSANY
Sbjct: 478 QK-FSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANY 536

Query: 523 CYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLED 582
           CYAS +   GVLLLCEVALGDM+ELL A+Y+A+KLP GKLSTKGVG+T PDP EA+TLED
Sbjct: 537 CYASAANPDGVLLLCEVALGDMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLED 596

Query: 583 GVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627
           GV+VPLGKP E   SKG L YNEYIVY+VDQIRMRYV+QV F YK
Sbjct: 597 GVVVPLGKPVESPYSKGSLEYNEYIVYNVDQIRMRYVLQVKFNYK 641

Length = 643
>gnl|CDD|238717 cd01437, parp_like, Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|216040 pfam00644, PARP, Poly(ADP-ribose) polymerase catalytic domain Back     alignment and domain information
>gnl|CDD|178669 PLN03122, PLN03122, Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>gnl|CDD|190460 pfam02877, PARP_reg, Poly(ADP-ribose) polymerase, regulatory domain Back     alignment and domain information
>gnl|CDD|153429 cd08002, WGR_PARP3_like, WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>gnl|CDD|153430 cd08003, WGR_PARP2_like, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|153426 cd07997, WGR_PARP, WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>gnl|CDD|214814 smart00773, WGR, Proposed nucleic acid binding domain Back     alignment and domain information
>gnl|CDD|218579 pfam05406, WGR, WGR domain Back     alignment and domain information
>gnl|CDD|153428 cd08001, WGR_PARP1_like, WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>gnl|CDD|238651 cd01341, ADP_ribosyl, ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>gnl|CDD|202100 pfam02037, SAP, SAP domain Back     alignment and domain information
>gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>gnl|CDD|238719 cd01439, TCCD_inducible_PARP_like, Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>gnl|CDD|153424 cd07994, WGR, WGR domain Back     alignment and domain information
>gnl|CDD|202100 pfam02037, SAP, SAP domain Back     alignment and domain information
>gnl|CDD|238718 cd01438, tankyrase_like, Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>gnl|CDD|128789 smart00513, SAP, Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>gnl|CDD|153425 cd07996, WGR_MMR_like, WGR domain of molybdate metabolism regulator and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 627
PLN03124643 poly [ADP-ribose] polymerase; Provisional 100.0
PLN03122815 Poly [ADP-ribose] polymerase; Provisional 100.0
PLN03123981 poly [ADP-ribose] polymerase; Provisional 100.0
cd01437347 parp_like Poly(ADP-ribose) polymerase (parp) catal 100.0
KOG1037531 consensus NAD+ ADP-ribosyltransferase Parp, requir 100.0
PF00644206 PARP: Poly(ADP-ribose) polymerase catalytic domain 100.0
cd01438223 tankyrase_like Tankyrases interact with the telome 100.0
PF02877133 PARP_reg: Poly(ADP-ribose) polymerase, regulatory 100.0
cd08003103 WGR_PARP2_like WGR domain of poly(ADP-ribose) poly 100.0
cd08002100 WGR_PARP3_like WGR domain of poly(ADP-ribose) poly 100.0
cd08001104 WGR_PARP1_like WGR domain of poly(ADP-ribose) poly 99.98
cd07997102 WGR_PARP WGR domain of poly(ADP-ribose) polymerase 99.96
cd01439121 TCCD_inducible_PARP_like Poly(ADP-ribose) polymera 99.92
cd01341137 ADP_ribosyl ADP_ribosylating enzymes catalyze the 99.92
smart0077384 WGR Proposed nucleic acid binding domain. This dom 99.85
PF0540681 WGR: WGR domain; InterPro: IPR008893 This domain i 99.83
cd0799473 WGR WGR domain. The WGR domain is found in a varie 99.77
cd0799674 WGR_MMR_like WGR domain of molybdate metabolism re 99.57
COG383185 Uncharacterized conserved protein [Function unknow 98.99
PF0203735 SAP: SAP domain; InterPro: IPR003034 The SAP (afte 98.69
smart0051335 SAP Putative DNA-binding (bihelical) motif predict 98.41
cd0799877 WGR_DNA_ligase WGR domain of bacterial DNA ligases 98.22
KOG4259260 consensus Putative nucleic acid-binding protein Hc 98.22
KOG4661 940 consensus Hsp27-ERE-TATA-binding protein/Scaffold 97.67
PF0203735 SAP: SAP domain; InterPro: IPR003034 The SAP (afte 95.8
PF1294935 HeH: HeH/LEM domain; PDB: 2OUT_A. 95.11
KOG42461194 consensus Predicted DNA-binding protein, contains 94.94
smart0051335 SAP Putative DNA-binding (bihelical) motif predict 94.01
>PLN03124 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-164  Score=1367.19  Aligned_cols=623  Identities=68%  Similarity=1.089  Sum_probs=572.8

Q ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhcc---------ccCCCcccCCCCCCCCCCCCccccchhhhc
Q 006883            1 MASNLKVDQLRAKLAQRGLSTAGTKAILVQRLEEAVEEENK---------KSVGSKKRGRECDETDSNGSQKVKSIESFG   71 (627)
Q Consensus         1 ~~~~~~v~~l~~el~~r~l~~~g~k~~l~~rl~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (627)
                      |++||||+|||+||++||||+.|+|++|+.||++|+.+++.         ..+....+.|..++...++++++++++++.
T Consensus         1 ~~~~~~v~~l~~~l~~~~~~~~g~k~~l~~rl~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (643)
T PLN03124          1 MANKLKVDELRAALAKRGLDTTGLKAALVRRLDDAIAEDAKTASKSGTKSSAGRKKRRERQDDGDDEPVSPKRIAIDEVK   80 (643)
T ss_pred             CCccchhHHHHHHHHhcCCcccccchHHHHHHHhhhhhhhcccccccccccchhhccccccCCCcccccchhhhhhhhhc
Confidence            89999999999999999999999999999999999988772         112222244445555557889999999999


Q ss_pred             cccHHHHHHHHHhhccCCCCchHHHHHHHhhcccCCCch---------hhhhhHhhhhccccceeeeeccCccccCCCCC
Q 006883           72 QMGVKQLREQADLRGLSKAGTKKELLERLCNHAEQSDSK---------DTLLQEEVNECKDEKIVKATKKGAAVLDPWLP  142 (627)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~k~~~~vD~~~~  142 (627)
                      +|+++.+++..+.++.++.++|.++.+|+++..+.+.++         ++.+++.++.++.++++++++||+++||+.||
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~vD~~~~  160 (643)
T PLN03124         81 GMTVRELREAASERGLATTGRKKDLLERLCAALESDVKVGSANGTGEDEKEKGGDEEREKEEKIVTATKKGRAVLDQWLP  160 (643)
T ss_pred             ccccchhhHHHHHHhhhccccccchhhhccccccccccccccccccchhccccccccccccccceeeeeecccccCCCCC
Confidence            999999999999999999999999999998766664322         22233555677889999999999999999999


Q ss_pred             cccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccCCCceeecCCCCHHHHHHHHHH
Q 006883          143 EHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQ  222 (627)
Q Consensus       143 ~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~G~~k~~~~f~s~e~Ai~~F~k  222 (627)
                      ..+++.+|||++++.+|+|||+|||+++|+|+||+||||+++..+.|+||+||||||+.||+++.+||+++++|+.+|++
T Consensus       161 ~~~~~~~hVyed~g~iYda~Lnqtdi~~n~NkFY~iQlLe~d~~~~Y~v~~rWGRVG~~Gq~~l~~~~~sle~Ai~~F~k  240 (643)
T PLN03124        161 DHIKSNYHVLEEGDDVYDAMLNQTNVGDNNNKFYVLQVLESDDGSKYMVYTRWGRVGVKGQDKLHGPYDSREPAIREFEK  240 (643)
T ss_pred             ccccCceEEEecCCeEEEEEEEccccCCCCcceEEEEEEEeCCCCeEEEEEEeCccCCcCcccccCCCCCHHHHHHHHHH
Confidence            87778999999999999999999999999999999999999888999999999999999999988789999999999999


Q ss_pred             HHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcHHHHHHHHHHcCHHHHHHHHHH
Q 006883          223 KFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISLICNISMMKQLMME  302 (627)
Q Consensus       223 kF~eKTgn~W~~r~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~~Vq~li~lI~n~~~~~~~m~e  302 (627)
                      +|++||||.|++|.+|+++||||+|||+||+.++++...  . .......+..+|+|+++||+||++|||+++|+++|++
T Consensus       241 kF~eKTGN~W~~R~~F~k~pgKY~~ie~dy~~~~~~~~~--~-~~~~~~~~~~~skL~~~Vq~Li~lIfd~~~m~~~m~e  317 (643)
T PLN03124        241 KFYDKTKNHWSDRKNFISHPKKYTWLEMDYEDEEESKKD--K-PSVSSEDKNKQSKLDPRVAQFISLICDVSMMKQQMME  317 (643)
T ss_pred             HHHHHhCCchhhcccccccCCceeEEEeecccccchhhh--c-cchhccccCCCCCCCHHHHHHHHHHhCHHHHHHHHHH
Confidence            999999999999999999999999999999976543221  0 1111122334699999999999999999999999999


Q ss_pred             hccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCChhHHHHhhhhccccccCCCCCCccccccCCCHHHHHHHHHHHHH
Q 006883          303 IGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPPDRRKLEELSGEFYTVIPHDFGFKKMRDFVIDTPQKLKLKLEMVEA  382 (627)
Q Consensus       303 ~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~~~~~l~~lsn~fYtlIPh~fg~~~~~~~~i~~~~~lk~k~~lle~  382 (627)
                      |+||+.+|||||||++||.+||+||++|+++|+......+.+|||+|||+|||+||++.+|||+|||.++|++|++|||+
T Consensus       318 ~~~D~~KmPLGkLSk~qI~kgy~vL~ei~~~l~~~~~~~l~~lSn~FYTlIPH~FG~~~~~~~vIdt~~~lk~k~elLe~  397 (643)
T PLN03124        318 IGYNARKLPLGKLSKSTILKGYEVLKRIAEVISRSDRETLEELSGEFYTVIPHDFGFKKMRQFTIDTPQKLKHKLEMVEA  397 (643)
T ss_pred             cCCCcccCCCcccCHHHHHHHHHHHHHHHHHHcccchHHHHHHhcCeEEecCcccccCCCCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888778999999999999999999999888999999999999999999


Q ss_pred             HHhHHHHHHHhhhcccccCCCchHHhhcccceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHH
Q 006883          383 LGEIEVATKLLEDDTEIQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERF  462 (627)
Q Consensus       383 L~dieiA~~ll~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF  462 (627)
                      |.|||+|++|++.......||+|.+|++|+|+|+||+++|+||++|++|+.+||+++|..|+++|.+||+|+|.+|.+||
T Consensus       398 L~DIevA~~ll~~~~~~~~~pld~~Y~~L~c~i~pLd~~S~efk~I~~Yl~nT~~~th~~y~l~V~~If~V~R~~E~~rF  477 (643)
T PLN03124        398 LGEIEIATKLLKDDIGEQDDPLYAHYKRLNCELEPLDTDSEEFSMIAKYLENTHGQTHSGYTLEIVQIFKVSREGEDERF  477 (643)
T ss_pred             HHHHHHHHHHHhhccCCCCCcHHHHHHHcCCeeEEcCCCCHHHHHHHHHHHhcCCCccCcCceeEEEEEEeccccchhhH
Confidence            99999999999876666789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccccccccCCCCCCeeEEEEEEEeec
Q 006883          463 RKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALG  542 (627)
Q Consensus       463 ~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALG  542 (627)
                      . .+++++|++|||||||.+||+|||++||+|+||++|++|||||+||||||++|||++||+++.+++.++|||||||||
T Consensus       478 ~-~~~~~~Nr~LLWHGSr~~N~~gILs~GLriaPpea~~~GymfGkGIYFAd~~skSa~Yc~~~~~~~~g~llLceVaLG  556 (643)
T PLN03124        478 Q-KFSSTKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPSTGYMFGKGVYFADMFSKSANYCYASAANPDGVLLLCEVALG  556 (643)
T ss_pred             H-HhhccCCeEEEEcCCCcccHHHHHhccCccCCcccccccccccceeEecchhhhhhhhhhccCCCCeeEEEEEEEecC
Confidence            9 788899999999999999999999999999999999999999999999999999999999988889999999999999


Q ss_pred             ceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCccCcCceEEEeecCceeeeeEEEE
Q 006883          543 DMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKGHLLYNEYIVYSVDQIRMRYVVQV  622 (627)
Q Consensus       543 k~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~~l~ynEYIVYd~~Qir~rYLV~~  622 (627)
                      ++++++.++|++.++|+|+|||+|+|++.|+|+++++++|||+||+|++++++...++|.||||||||++||||||||+|
T Consensus       557 ~~~el~~~~y~a~~~p~G~~S~kG~G~~~Pdp~~~~~~~dGV~VP~Gk~~~~~~~~~~L~yNEYIVYd~~Qvr~rYLv~v  636 (643)
T PLN03124        557 DMNELLQADYNANKLPPGKLSTKGVGRTVPDPSEAKTLEDGVVVPLGKPVESPYSKGSLEYNEYIVYNVDQIRMRYVLQV  636 (643)
T ss_pred             CcchhccCccccccCCCCceeEEeccCCCCCcccceecCCCeEeeCCccccCCCCCCccccCceEEechhHeEEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999988778899999999999999999999999


Q ss_pred             EEEeC
Q 006883          623 NFKYK  627 (627)
Q Consensus       623 ~~~~~  627 (627)
                      +|+|+
T Consensus       637 kf~~~  641 (643)
T PLN03124        637 KFNYK  641 (643)
T ss_pred             EEeec
Confidence            99996

>PLN03122 Poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>PLN03123 poly [ADP-ribose] polymerase; Provisional Back     alignment and domain information
>cd01437 parp_like Poly(ADP-ribose) polymerase (parp) catalytic domain catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>KOG1037 consensus NAD+ ADP-ribosyltransferase Parp, required for poly-ADP ribosylation of nuclear proteins [Transcription; Replication, recombination and repair; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00644 PARP: Poly(ADP-ribose) polymerase catalytic domain; InterPro: IPR012317 Poly(ADP-ribose) polymerases (PARP) are a family of enzymes present in eukaryotes, which catalyze the poly(ADP-ribosyl)ation of a limited number of proteins involved in chromatin architecture, DNA repair, or in DNA metabolism, including PARP itself Back     alignment and domain information
>cd01438 tankyrase_like Tankyrases interact with the telomere reverse transcriptase complex (TERT) Back     alignment and domain information
>PF02877 PARP_reg: Poly(ADP-ribose) polymerase, regulatory domain; InterPro: IPR004102 Poly(ADP-ribose) polymerase catalyses the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd08003 WGR_PARP2_like WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd08002 WGR_PARP3_like WGR domain of poly(ADP-ribose) polymerase 3 and similar proteins Back     alignment and domain information
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins Back     alignment and domain information
>cd07997 WGR_PARP WGR domain of poly(ADP-ribose) polymerases Back     alignment and domain information
>cd01439 TCCD_inducible_PARP_like Poly(ADP-ribose) polymerases catalyse the covalent attachment of ADP-ribose units from NAD+ to itself and to a limited number of other DNA binding proteins, which decreases their affinity for DNA Back     alignment and domain information
>cd01341 ADP_ribosyl ADP_ribosylating enzymes catalyze the transfer of ADP_ribose from NAD+ to substrates Back     alignment and domain information
>smart00773 WGR Proposed nucleic acid binding domain Back     alignment and domain information
>PF05406 WGR: WGR domain; InterPro: IPR008893 This domain is named after the most conserved central motif of the domain Back     alignment and domain information
>cd07994 WGR WGR domain Back     alignment and domain information
>cd07996 WGR_MMR_like WGR domain of molybdate metabolism regulator and related proteins Back     alignment and domain information
>COG3831 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] Back     alignment and domain information
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information
>cd07998 WGR_DNA_ligase WGR domain of bacterial DNA ligases Back     alignment and domain information
>KOG4259 consensus Putative nucleic acid-binding protein Hcc-1/proliferation associated cytokine-inducible protein, contains SAP domain [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription] Back     alignment and domain information
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis [] Back     alignment and domain information
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A Back     alignment and domain information
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only] Back     alignment and domain information
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query627
4dqy_C506 Structure Of Human Parp-1 Bound To A Dna Double Str 1e-104
1gs0_A351 Crystal Structure Of The Catalytic Fragment Of Muri 5e-94
3kcz_A368 Human Poly(Adp-Ribose) Polymerase 2, Catalytic Frag 8e-91
1uk0_A350 Crystal Structure Of Catalytic Domain Of Human Poly 8e-84
2rd6_A350 Parp Complexed With A861695 Length = 350 2e-83
1efy_A350 Crystal Structure Of The Catalytic Fragment Of Poly 3e-80
1a26_A361 The Catalytic Fragment Of Poly(Adp-Ribose) Polymera 4e-80
3c49_A357 Human Poly(Adp-Ribose) Polymerase 3, Catalytic Frag 1e-39
2eoc_A124 Solution Structure Of The Wgr Domain From Human Pol 2e-12
2cr9_A139 Solution Structure Of Wgr Domain Of Poly(Adp-Ribose 6e-12
3udd_A224 Tankyrase-1 In Complex With Small Molecule Inhibito 1e-04
4dvi_A217 Crystal Structure Of Tankyrase 1 With Iwr2 Length = 2e-04
2rf5_A258 Crystal Structure Of Human Tankyrase 1- Catalytic P 2e-04
3mhk_A223 Human Tankyrase 2 - Catalytic Parp Domain In Comple 4e-04
3kr7_A240 Human Tankyrase 2 - Catalytic Parp Domain Length = 5e-04
>pdb|4DQY|C Chain C, Structure Of Human Parp-1 Bound To A Dna Double Strand Break Length = 506 Back     alignment and structure 
Iteration: 1

 Score =  374 bits (961), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/511 (42%), Positives = 308/511 (60%), Gaps = 21/511 (4%)
Query: 121 CKDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQL 180
            K EK +K T KG A +DP     ++ S HV +K   ++ A L   ++    N +Y +QL
Sbjct: 1   MKSEKRMKLTLKGGAAVDP--DSGLEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQL 58
Query: 181 LESDGGGEYMVYNRWGRVG-MKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFT 239
           LE D    Y ++  WGRVG + G +K+    + +D AI  F + +  KT N W + + FT
Sbjct: 59  LEDDKENRYWIFRSWGRVGTVIGSNKLEQMPSKED-AIEHFMKLYEEKTGNAW-HSKNFT 116
Query: 240 SYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQP-RNTKLEPCVAKFISLICNISMMKQ 298
            YPK +  LE+DY   Q EE+V        + + P   +KL   V   I +I ++  MK+
Sbjct: 117 KYPKKFYPLEIDYG--QDEEAV------KKLTVNPGTKSKLPKPVQDLIKMIFDVESMKK 168
Query: 299 LMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVI-HPPDRRKLEELSGEFYTVIPHDF 357
            M+E   +  K+PLGKLSK  I   Y +L  +   +       ++ +LS  FYT+IPHDF
Sbjct: 169 AMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDF 228
Query: 358 GFKKMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQA-DPLYSHYQRLHCQLT 416
           G KK    +++    ++ K EM++ L +IEVA  LL   ++  + DP+  +Y++L   + 
Sbjct: 229 GMKKPP--LLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIK 286
Query: 417 PLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLW 476
            ++ DS E  +I  Y+ NTHA TH+AY ++++ IF++EREGE +R+ K F    NR LLW
Sbjct: 287 VVDRDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRY-KPFKQLHNRRLLW 345
Query: 477 HGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLL 536
           HGSR TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S     G++LL
Sbjct: 346 HGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILL 405
Query: 537 CEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLN 596
            EVALG+M EL +A++   KLP GK S KG+G+T PDP  A    DGV VPLG       
Sbjct: 406 GEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDP-SANISLDGVDVPLGTGISSGV 463
Query: 597 SKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627
           +   LLYNEYIVY + Q+ ++Y++++ F +K
Sbjct: 464 NDTSLLYNEYIVYDIAQVNLKYLLKLKFNFK 494
>pdb|1GS0|A Chain A, Crystal Structure Of The Catalytic Fragment Of Murine Poly (Adp-Ribose) Polymerase-2 Length = 351 Back     alignment and structure
>pdb|3KCZ|A Chain A, Human Poly(Adp-Ribose) Polymerase 2, Catalytic Fragment In Complex With An Inhibitor 3-Aminobenzamide Length = 368 Back     alignment and structure
>pdb|1UK0|A Chain A, Crystal Structure Of Catalytic Domain Of Human Poly(Adp- Ribose) Polymerase With A Novel Inhibitor Length = 350 Back     alignment and structure
>pdb|2RD6|A Chain A, Parp Complexed With A861695 Length = 350 Back     alignment and structure
>pdb|1EFY|A Chain A, Crystal Structure Of The Catalytic Fragment Of Poly (Adp- Ribose) Polymerase Complexed With A Benzimidazole Inhibitor Length = 350 Back     alignment and structure
>pdb|1A26|A Chain A, The Catalytic Fragment Of Poly(Adp-Ribose) Polymerase Complexed With Carba-Nad Length = 361 Back     alignment and structure
>pdb|3C49|A Chain A, Human Poly(Adp-Ribose) Polymerase 3, Catalytic Fragment In Complex With An Inhibitor Ku0058948 Length = 357 Back     alignment and structure
>pdb|2EOC|A Chain A, Solution Structure Of The Wgr Domain From Human Poly [adp- Ribose] Polymerase-3 Length = 124 Back     alignment and structure
>pdb|2CR9|A Chain A, Solution Structure Of Wgr Domain Of Poly(Adp-Ribose) Polymerase-1 Length = 139 Back     alignment and structure
>pdb|3UDD|A Chain A, Tankyrase-1 In Complex With Small Molecule Inhibitor Length = 224 Back     alignment and structure
>pdb|4DVI|A Chain A, Crystal Structure Of Tankyrase 1 With Iwr2 Length = 217 Back     alignment and structure
>pdb|2RF5|A Chain A, Crystal Structure Of Human Tankyrase 1- Catalytic Parp Domain Length = 258 Back     alignment and structure
>pdb|3MHK|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain In Complex With 2-(2- Pyridyl)-7,8-Dihydro-5h-Thiino[4,3-D]pyrimidin-4-Ol Length = 223 Back     alignment and structure
>pdb|3KR7|A Chain A, Human Tankyrase 2 - Catalytic Parp Domain Length = 240 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query627
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 1e-163
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 1e-128
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 1e-127
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 1e-109
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 1e-43
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 3e-37
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 1e-35
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 3e-32
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 3e-32
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 4e-32
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 8e-32
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 1e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1zrj_A50 E1B-55KDA-associated protein 5 isoform C; SAP doma 1e-09
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 4e-07
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 2e-06
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 1e-04
2do1_A55 Nuclear protein HCC-1; SAP domain, structural geno 2e-06
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 5e-04
1h1j_S51 THO1 protein; SAP domain, DNA binding; NMR {Saccha 8e-04
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Length = 506 Back     alignment and structure
 Score =  476 bits (1226), Expect = e-163
 Identities = 209/508 (41%), Positives = 301/508 (59%), Gaps = 17/508 (3%)

Query: 122 KDEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLL 181
           K EK +K T KG A +DP     ++ S HV +K   ++ A L   ++    N +Y +QLL
Sbjct: 2   KSEKRMKLTLKGGAAVDPDSG--LEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLL 59

Query: 182 ESDGGGEYMVYNRWGRVGMKGQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSY 241
           E D    Y ++  WGRVG             ++ AI  F + +  KT N W + + FT Y
Sbjct: 60  EDDKENRYWIFRSWGRVGTVIGSNKLEQMPSKEDAIEHFMKLYEEKTGNAW-HSKNFTKY 118

Query: 242 PKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEPCVAKFISLICNISMMKQLMM 301
           PK +  LE+DY  +++    +   P +        +KL   V   I +I ++  MK+ M+
Sbjct: 119 PKKFYPLEIDYGQDEEAVKKLTVNPGTK-------SKLPKPVQDLIKMIFDVESMKKAMV 171

Query: 302 EIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPP-DRRKLEELSGEFYTVIPHDFGFK 360
           E   +  K+PLGKLSK  I   Y +L  +   +       ++ +LS  FYT+IPHDFG K
Sbjct: 172 EYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMK 231

Query: 361 KMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTEIQ-ADPLYSHYQRLHCQLTPLE 419
           K    +++    ++ K EM++ L +IEVA  LL   ++    DP+  +Y++L   +  ++
Sbjct: 232 KP--PLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVD 289

Query: 420 VDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGS 479
            DS E  +I  Y+ NTHA TH+AY ++++ IF++EREGE +R+ K F    NR LLWHGS
Sbjct: 290 RDSEEAEIIRKYVKNTHATTHNAYDLEVIDIFKIEREGECQRY-KPFKQLHNRRLLWHGS 348

Query: 480 RLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEV 539
           R TN+ GILSQGLRIAPPEAP TGYMFGKG+YFADM SKSANYC+ S     G++LL EV
Sbjct: 349 RTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGDPIGLILLGEV 408

Query: 540 ALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKG 599
           ALG+M EL +A++ + KLP GK S KG+G+T PDP    +L DGV VPLG       +  
Sbjct: 409 ALGNMYELKHASHIS-KLPKGKHSVKGLGKTTPDPSANISL-DGVDVPLGTGISSGVNDT 466

Query: 600 HLLYNEYIVYSVDQIRMRYVVQVNFKYK 627
            LLYNEYIVY + Q+ ++Y++++ F +K
Sbjct: 467 SLLYNEYIVYDIAQVNLKYLLKLKFNFK 494
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Length = 368 Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Length = 350 Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Length = 357 Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Length = 277 Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 124 Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* Length = 240 Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* Length = 193 Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Length = 198 Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Length = 221 Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Length = 217 Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Length = 173 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 50 Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Length = 75 Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Length = 75 Back     alignment and structure
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Length = 55 Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query627
4dqy_C506 Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-rib 100.0
3kjd_A368 Poly [ADP-ribose] polymerase 2; transferase, enzym 100.0
1efy_A350 Poly (ADP-ribose) polymerase; benzimidazole, inhib 100.0
3c4h_A357 Poly(ADP-ribose) polymerase 3; enzyme-inhibitor co 100.0
2x5y_A173 Zinc finger CCCH-type antiviral protein 1; antivir 100.0
3u9h_A240 Tankyrase-2; protein-ligand complex, diphtheria to 100.0
2pqf_A198 Poly [ADP-ribose] polymerase 12; enzyme-inhibitor 100.0
2eoc_A124 Poly [ADP-ribose] polymerase 3; anti-parallel beta 100.0
3blj_A221 Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, 100.0
3hkv_A217 PARP-10, poly [ADP-ribose] polymerase 10; NAD, tra 100.0
3smj_A193 Poly [ADP-ribose] polymerase 14; diphtheria toxin 100.0
4f0d_A277 PARP-16, poly [ADP-ribose] polymerase 16; transfer 99.83
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 99.1
1zrj_A50 E1B-55KDA-associated protein 5 isoform C; SAP doma 99.09
1h1j_S51 THO1 protein; SAP domain, DNA binding; NMR {Saccha 99.02
2do1_A55 Nuclear protein HCC-1; SAP domain, structural geno 98.98
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 98.95
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 98.01
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 97.88
1zrj_A50 E1B-55KDA-associated protein 5 isoform C; SAP doma 96.11
1h1j_S51 THO1 protein; SAP domain, DNA binding; NMR {Saccha 96.03
2do1_A55 Nuclear protein HCC-1; SAP domain, structural geno 95.31
2kvu_A75 MKL/myocardin-like protein 1; SAP motif, DNA/RNA b 95.23
2rnn_A114 E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA bind 89.52
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 88.35
1jjr_A151 KU70, thyroid autoantigen; DNA repair protein, pro 87.75
2rno_A110 Putative DNA-binding protein; SUMO ligase, sumoyla 84.64
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose) polymerase, DNA binding protein, ADP- transferase, PARP-like zinc finger, poly(ADP-ribosyl)ation; HET: DNA; 3.25A {Homo sapiens} PDB: 2cr9_A Back     alignment and structure
Probab=100.00  E-value=2.7e-132  Score=1098.33  Aligned_cols=489  Identities=42%  Similarity=0.735  Sum_probs=430.8

Q ss_pred             ccceeeeeccCccccCCCCCcccCCceEEEEeCCceEEEEEeeccCCCCCccEEEEEEEEeCCCCcEEEEEEeeccccC-
Q 006883          123 DEKIVKATKKGAAVLDPWLPEHIKISYHVFQKDNDIYDAMLNQTNVGDNNNKFYVIQLLESDGGGEYMVYNRWGRVGMK-  201 (627)
Q Consensus       123 ~~~~~~~~~k~~~~vD~~~~~~~~~~~~V~~~~~~~Y~~~L~~tdi~~n~NkFY~iQll~~~~~~~y~v~~rWGRVG~~-  201 (627)
                      .+++++++.||+++|||.|+  +++.+|||++++.+|+|+|++||+++|+|+||+||||+++.++.|+|||||||||+. 
T Consensus         3 ~~~~~~~~~kg~~~Vd~~~~--~~~~~~Vy~~~~~~Y~~~L~~td~~~n~NkfY~lQll~~~~~~~y~v~~rWGRVG~~~   80 (506)
T 4dqy_C            3 SEKRMKLTLKGGAAVDPDSG--LEHSAHVLEKGGKVFSATLGLVDIVKGTNSYYKLQLLEDDKENRYWIFRSWGRVGTVI   80 (506)
T ss_dssp             ------------CCCCGGGS--CTTTSCCCEETTEESEEEEEEECTTTCCEEEEEEECC--------CEEEEEEETTSSC
T ss_pred             CCceEEEEEeCCeecCCccC--CCCceEEEEeCCeEEEEEEEcccccCCCcceEEEEEEEcCCCCEEEEEEEECccCccc
Confidence            35678899999999999986  457899999999999999999999999999999999998888899999999999995 


Q ss_pred             CCceeecCCCCHHHHHHHHHHHHHHHhhcccccCCCCccCCCCceeeeecccccccchhhhccCCCCccCCCCCCCCCcH
Q 006883          202 GQDKIFGPYNLQDTAINEFEQKFFAKTKNHWSNRRQFTSYPKCYTWLEMDYSANQKEESVVHEKPNSTINIQPRNTKLEP  281 (627)
Q Consensus       202 G~~k~~~~f~s~e~Ai~~F~kkF~eKTgn~W~~r~~F~~~pgKY~~ve~d~~~~~~~~~~~~~~~~~~~~~~~~~skL~~  281 (627)
                      ||+++. +|+++++|+++|+++|++||||+|++| +|+++||||++||+||+.++++..    ...   .....+|+|++
T Consensus        81 Gq~~l~-~~~s~~~Ai~~F~k~F~~KTgn~W~~R-~f~k~pgKy~~ve~d~~~~~~~~~----~~~---~~~~~~s~L~~  151 (506)
T 4dqy_C           81 GSNKLE-QMPSKEDAIEHFMKLYEEKTGNAWHSK-NFTKYPKKFYPLEIDYGQDEEAVK----KLT---VNPGTKSKLPK  151 (506)
T ss_dssp             EEEEEE-CCSCSHHHHHHHHHHHHHHHSSCSSCS-SCCCCTTCCEEECBC------------------------CCCSCH
T ss_pred             ccceec-cCCCHHHHHHHHHHHHHHHhcCCcccc-CccccCCccceeecccccchhhhh----hhc---ccCCCCCCCCH
Confidence            888875 689999999999999999999999999 999999999999999976433221    010   11234799999


Q ss_pred             HHHHHHHHHcCHHHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhcCCC-ChhHHHHhhhhccccccCCCCCC
Q 006883          282 CVAKFISLICNISMMKQLMMEIGYNANKLPLGKLSKSTILKGYDVLKRIADVIHPP-DRRKLEELSGEFYTVIPHDFGFK  360 (627)
Q Consensus       282 ~Vq~li~lI~n~~~~~~~m~e~~~D~~kmPLGkLSk~qI~~g~~vL~eI~~~l~~~-~~~~l~~lsn~fYtlIPh~fg~~  360 (627)
                      +||+||++|||+++|+++|.+|++|+.+||||+||++||.+||+||++|+++|++. ..+.+.+|||+|||+|||+||++
T Consensus       152 ~Vq~Li~lIfd~~~~~~~m~~~~~D~~k~PLGkLS~~qI~~g~~vL~~i~~~l~~~~~~~~l~~lsn~fYtlIPh~fg~~  231 (506)
T 4dqy_C          152 PVQDLIKMIFDVESMKKAMVEYEIDLQKMPLGKLSKRQIQAAYSILSEVQQAVSQGSSDSQILDLSNRFYTLIPHDFGMK  231 (506)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHTTTBCCSSTTTSCBCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCBCCTTS
T ss_pred             HHHHHHHHHhHHHHHHHHHHHhCCChhhCCCccCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhhhhEeCCccccCC
Confidence            99999999999999999999999999999999999999999999999999999775 45789999999999999999987


Q ss_pred             ccccccCCCHHHHHHHHHHHHHHHhHHHHHHHhhhccc-ccCCCchHHhhcccceeEEcCCCCHHHHHHHHHHhcccCCC
Q 006883          361 KMRDFVIDTPQKLKLKLEMVEALGEIEVATKLLEDDTE-IQADPLYSHYQRLHCQLTPLEVDSLEFSLIANYLLNTHAKT  439 (627)
Q Consensus       361 ~~~~~~i~~~~~lk~k~~lle~L~dieiA~~ll~~~~~-~~~~pld~~Y~~L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~  439 (627)
                        +||+|++.++|+++++||++|.|||+|++|++.+.. ...||+|++|++|+|+|++|+++|+||++|++||++|++++
T Consensus       232 --~pp~i~~~~~l~~k~~ll~~L~dieiA~~l~~~~~~~~~~~pld~~Y~~L~~~l~~L~~~s~Ey~~I~~~~~~T~~~~  309 (506)
T 4dqy_C          232 --KPPLLNNADSVQAKAEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLKTDIKVVDRDSEEAEIIRKYVKNTHATT  309 (506)
T ss_dssp             --CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCTTSCHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHTCCSS
T ss_pred             --CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchHHHHHHhCcEEEECCCCChHHHHHHHHHHhccCcc
Confidence              579999999999999999999999999999976532 45899999999999999999999999999999999999999


Q ss_pred             CCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhhCCCCCCCCCCCCceeeeeeeeeccccccc
Q 006883          440 HSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKS  519 (627)
Q Consensus       440 h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~GLriaP~ea~~tG~mFGkGIYFAd~~SKS  519 (627)
                      |..++++|.+||||+|++++++|. .+++.+|+++|||||+.+||++||++||+++|++++.+|+|||+|||||+++|||
T Consensus       310 h~~~~~~I~~I~rI~~~~e~~~f~-~~k~~~N~~lL~HGT~~~n~~~Il~~Gf~~~~~~a~~~G~~fGkGiYFA~~askS  388 (506)
T 4dqy_C          310 HNAYDLEVIDIFKIEREGECQRYK-PFKQLHNRRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKS  388 (506)
T ss_dssp             CTTCCCCEEEEEEEEETTTTTTTH-HHHSSSCEEEEEEECCTTTHHHHHHHCSCCCCSSSCCTTCSSCSSEEEBSSHHHH
T ss_pred             cccCCceeEeEEEEccHHHHhhHH-HhhcCCCceEEecCCChHhHHHHHhcCCCcCCccCCcCCceeeeeEEecchhhcc
Confidence            988899999999999999999999 6778999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCcCCCCCCceeccCCeEecCCCccccCCCCc
Q 006883          520 ANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGKPKEQLNSKG  599 (627)
Q Consensus       520 a~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~~P~p~~~~~~~dGv~vP~Gk~~~~~~~~~  599 (627)
                      ++||+++..++.++||||+||||++++++.+++ ...||+|||||+|+|++.|+|++. ++.|||.||+|+|++++..++
T Consensus       389 ~~Y~~~~~~~~~~~mll~~V~lG~~~~~~~~~~-~~~~p~G~dSv~g~g~~~P~p~~~-~~~dGv~vP~G~~~~~~~~~~  466 (506)
T 4dqy_C          389 ANYCHTSQGDPIGLILLGEVALGNMYELKHASH-ISKLPKGKHSVKGLGKTTPDPSAN-ISLDGVDVPLGTGISSGVNDT  466 (506)
T ss_dssp             HTTSCCCSSSCEEEEEEEEEECCSEEEESSCCC-CSSCCTTCCEEEECCSEEECGGGC-EESSSCEECCCCEEECSCCCC
T ss_pred             ccccCCCCCCCeEEEEEEEEecCCceecccchh-hhccCCCCceEEeCCcCcCCcccc-cccCCeEEECCCcccCCCCCC
Confidence            999998877789999999999999999998885 689999999999999999999988 788999999999999888888


Q ss_pred             cCcCceEEEeecCceeeeeEEEEEEEeC
Q 006883          600 HLLYNEYIVYSVDQIRMRYVVQVNFKYK  627 (627)
Q Consensus       600 ~l~ynEYIVYd~~Qir~rYLV~~~~~~~  627 (627)
                      +|.||||||||++||||||||+|+|+|+
T Consensus       467 ~l~ynEyiVYd~~Qir~rYLv~v~~~~~  494 (506)
T 4dqy_C          467 SLLYNEYIVYDIAQVNLKYLLKLKFNFK  494 (506)
T ss_dssp             SCSBCEEEESSGGGEEEEEEEEEECCCC
T ss_pred             cccccceEEEchHHeeEEEEEEEEEEcc
Confidence            9999999999999999999999999985
>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, S genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A Back     alignment and structure
>1efy_A Poly (ADP-ribose) polymerase; benzimidazole, inhibitor, catalytic fragment, transferase; HET: BZC; 2.20A {Gallus gallus} SCOP: a.41.1.1 d.166.1.2 PDB: 1a26_A* 1pax_A* 2paw_A 2pax_A* 3pax_A* 4pax_A* 2rcw_A* 1uk1_A* 1wok_A* 1uk0_A* 2rd6_A* 3gjw_A* 3gn7_A* 3l3l_A* 3l3m_A* Back     alignment and structure
>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* Back     alignment and structure
>2x5y_A Zinc finger CCCH-type antiviral protein 1; antiviral defense, immune system, transferase; 1.05A {Homo sapiens} Back     alignment and structure
>3u9h_A Tankyrase-2; protein-ligand complex, diphtheria toxin like fold, transfer ribosylation; HET: SO4; 1.75A {Homo sapiens} PDB: 3kr8_A* 3kr7_A* 3p0n_A* 3p0p_A* 3p0q_A* 3mhj_A* 3u9y_A* 3ua9_A* 4avu_A* 4avw_A* 3mhk_A* 2rf5_A 3udd_A* 3uh2_A* 3uh4_A* 4dvi_A* 4hlh_A* 4hki_A* 4hkn_A* 4hl5_A* ... Back     alignment and structure
>2pqf_A Poly [ADP-ribose] polymerase 12; enzyme-inhibitor complex, catalytic fragment, structural GEN structural genomics consortium, SGC, transferase; HET: GAB CIT; 2.20A {Homo sapiens} Back     alignment and structure
>2eoc_A Poly [ADP-ribose] polymerase 3; anti-parallel beta-sheet, cell cycle control, DNA damage, transcription, NAD+, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3blj_A Poly(ADP-ribose) polymerase 15; PARP, BAL-3, SGC, structural GE consortium, glycosyltransferase, NAD, nucleus; 2.20A {Homo sapiens} PDB: 3gey_A* Back     alignment and structure
>3hkv_A PARP-10, poly [ADP-ribose] polymerase 10; NAD, transferase, structural genomics, structural genomics consortium, SGC, cytoplasm, glycosyltransferase; HET: 3AB; 2.10A {Homo sapiens} Back     alignment and structure
>3smj_A Poly [ADP-ribose] polymerase 14; diphtheria toxin like fold, transferase, NAD+, ADP-ribosylat transferase-transferase inhibitor complex; HET: FDR; 1.50A {Homo sapiens} PDB: 3goy_A* 3smi_A* 3se2_A* 4f1l_A* 4f1q_A* Back     alignment and structure
>4f0d_A PARP-16, poly [ADP-ribose] polymerase 16; transferase, ARTD15, structural genomics structural genomics consortium, SGC; HET: 3AB; 2.70A {Homo sapiens} Back     alignment and structure
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A Back     alignment and structure
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A Back     alignment and structure
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1 Back     alignment and structure
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A Back     alignment and structure
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 627
d1gs0a2217 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, 1e-78
d1efya2215 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase 6e-77
d2cr9a1126 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1 3e-44
d1gs0a1134 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) po 2e-43
d1efya1135 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) po 2e-43
d1h1js_44 a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak 9e-09
d1h1js_44 a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Bak 4e-05
d1zrja137 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle 2e-08
d1zrja137 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucle 9e-04
d1jeqa151 a.140.2.1 (A:559-609) DNA binding C-terminal domai 6e-07
d1jeqa151 a.140.2.1 (A:559-609) DNA binding C-terminal domai 5e-04
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 217 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  246 bits (629), Expect = 1e-78
 Identities = 122/220 (55%), Positives = 153/220 (69%), Gaps = 7/220 (3%)

Query: 411 LHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSK 470
           LHC L PL+ +S EF +I+ YL +THA TH  Y++ ++ +F VE+EGE E FR+   +  
Sbjct: 1   LHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFRE---DLP 57

Query: 471 NRMLLWHGSRLTNWTGILSQGLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSAT 530
           NRMLLWHGSRL+NW GILS GLR+APPEAP TGYMFGKG+YFADM SKSANYC+AS    
Sbjct: 58  NRMLLWHGSRLSNWVGILSHGLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKN 117

Query: 531 AGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQTAPDPLEAETLEDGVIVPLGK 590
            G+LLL EVALG  +ELL AN  A  L  GK STKG+G+ AP P    TL +G  VPLG 
Sbjct: 118 TGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKMAPSPAHFITL-NGSTVPLGP 176

Query: 591 PKEQ---LNSKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK 627
             +          L YNE+IVYS +Q+RMRY++++ F + 
Sbjct: 177 ASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNFL 216
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 215 Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Length = 134 Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Length = 135 Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 44 Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 37 Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Length = 51 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query627
d1gs0a2217 Poly(ADP-ribose) polymerase, C-terminal domain {Mo 100.0
d1efya2215 Poly(ADP-ribose) polymerase, C-terminal domain {Ch 100.0
d2cr9a1126 Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Hom 100.0
d1gs0a1134 Domain of poly(ADP-ribose) polymerase {Mouse (Mus 100.0
d1efya1135 Domain of poly(ADP-ribose) polymerase {Chicken (Ga 100.0
d1zrja137 Heterogeneous nuclear ribonucleoprotein U-like pro 99.18
d1h1js_44 S/mar DNA-binding protein Tho1 {Baker's yeast (Sac 98.86
d2do1a142 Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId 98.77
d1jeqa151 DNA binding C-terminal domain of ku70 {Human (Homo 98.57
d1h1js_44 S/mar DNA-binding protein Tho1 {Baker's yeast (Sac 96.56
d1zrja137 Heterogeneous nuclear ribonucleoprotein U-like pro 96.2
d1jeqa151 DNA binding C-terminal domain of ku70 {Human (Homo 94.92
d1y02a144 Rififylin (FYVE-RING finger protein Sakura) {Human 84.34
d2do1a142 Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId 80.11
>d1gs0a2 d.166.1.2 (A:341-557) Poly(ADP-ribose) polymerase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ADP-ribosylation
superfamily: ADP-ribosylation
family: Poly(ADP-ribose) polymerase, C-terminal domain
domain: Poly(ADP-ribose) polymerase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-56  Score=446.22  Aligned_cols=213  Identities=57%  Similarity=0.972  Sum_probs=200.9

Q ss_pred             ccceeEEcCCCCHHHHHHHHHHhcccCCCCCCccccccceEEEeechHhHHHHHHhccCCCceEEeecCCCcCHHHHhhh
Q 006883          411 LHCQLTPLEVDSLEFSLIANYLLNTHAKTHSAYSVDIVQIFRVEREGETERFRKQFSNSKNRMLLWHGSRLTNWTGILSQ  490 (627)
Q Consensus       411 L~~~l~~L~~~s~Eyk~I~~y~~~t~~~~h~~~~~~I~~IfrV~r~~e~~rF~~~~~~~~N~~LLwHGSr~~N~~gILs~  490 (627)
                      |+|+|+||+++|+||++|++||.+|++++|..+.++|++||+|+|+.++++|.   .+.+|+++|||||+.+|+.+||++
T Consensus         1 L~c~i~~l~~~s~ey~~I~~~~~~t~~~~~~~~~~~I~~I~~v~r~~e~~~~~---~~~~n~~~LfHGT~~~n~~~Il~~   77 (217)
T d1gs0a2           1 LHCALRPLDHESNEFKVISQYLQSTHAPTHKDYTMTLLDVFEVEKEGEKEAFR---EDLPNRMLLWHGSRLSNWVGILSH   77 (217)
T ss_dssp             TTEEEEECCTTSHHHHHHHHHHHHTCCTTCCSEEEEEEEEEEEEETTHHHHSC---TTCSCEEEEEEEECGGGHHHHHHH
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHhhCCCccCCCcceEEEEEEEcchhHHHHhh---hcCCceEEEEecccHHHHHHHHHc
Confidence            79999999999999999999999999999988899999999999999999997   578999999999999999999999


Q ss_pred             CCCCCCCCCCCCceeeeeeeeeccccccccccccCCCCCCeeEEEEEEEeecceeeeccccCCCCCCCCCCccccccCCc
Q 006883          491 GLRIAPPEAPATGYMFGKGVYFADMFSKSANYCYASPSATAGVLLLCEVALGDMSELLYANYDADKLPDGKLSTKGVGQT  570 (627)
Q Consensus       491 GLriaP~ea~~tG~mFGkGIYFAd~~SKSa~Yc~~~~~~~~~~mlLCeVALGk~~e~~~~~~~~~~~p~G~~Sv~g~G~~  570 (627)
                      ||+++|+.++.+|+|||+|||||+++++|++||+++...+.++||||+||||++++++..+.++.++|.|+|||+|+|++
T Consensus        78 Gf~~~~~~~~~~g~~fG~GiYfa~~~s~s~~y~~~~~~~~~~~m~l~~V~lG~~~~~~~~~~~~~~~p~g~~sv~~~g~~  157 (217)
T d1gs0a2          78 GLRVAPPEAPITGYMFGKGIYFADMSSKSANYCFASRLKNTGLLLLSEVALGQCNELLEANPKAQGLLRGKHSTKGMGKM  157 (217)
T ss_dssp             CSCCCCSSSCGGGSTTSSSEEEBSCHHHHHGGGCCCSSSCEEEEEEEEEECCSEEEESSCCTTGGGGCTTCSEEEECCSE
T ss_pred             CCCCCCccCcccceeeeccceeccccccccccccCCcCCCeEEEEEEEEEecceeeeccCCcccccCCCCcceeeecccc
Confidence            99999999999999999999999999999999998877899999999999999999998888889999999999999999


Q ss_pred             CCCCCCceeccCCeEecCCCccccCC---CCccCcCceEEEeecCceeeeeEEEEEEEeC
Q 006883          571 APDPLEAETLEDGVIVPLGKPKEQLN---SKGHLLYNEYIVYSVDQIRMRYVVQVNFKYK  627 (627)
Q Consensus       571 ~P~p~~~~~~~dGv~vP~Gk~~~~~~---~~~~l~ynEYIVYd~~Qir~rYLV~~~~~~~  627 (627)
                      .|+|+....+ ||++||+|+.+++..   .+++|.||||||||++||+|||||+|+|+|+
T Consensus       158 ~p~p~~~~~~-~g~~vp~g~~~~s~~~~~~~~~l~~nEyVVy~~~Qv~~~YLi~~k~~~~  216 (217)
T d1gs0a2         158 APSPAHFITL-NGSTVPLGPASDTGILNPEGYTLNYNEFIVYSPNQVRMRYLLKIQFNFL  216 (217)
T ss_dssp             ECCGGGCEEE-TTEEECCSCCEECCCCCSSSCCCSBCEEEESCGGGEEEEEEEEEEEEEC
T ss_pred             cCChhhcccc-CCeeccCCCccccCccCCCCCccccCeEEEEchhheeEEEEEEEEEEec
Confidence            9999888776 999999999887543   3457999999999999999999999999996
>d1efya2 d.166.1.2 (A:797-1011) Poly(ADP-ribose) polymerase, C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gs0a1 a.41.1.1 (A:207-340) Domain of poly(ADP-ribose) polymerase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1efya1 a.41.1.1 (A:662-796) Domain of poly(ADP-ribose) polymerase {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1zrja1 a.140.2.1 (A:1-37) Heterogeneous nuclear ribonucleoprotein U-like protein 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jeqa1 a.140.2.1 (A:559-609) DNA binding C-terminal domain of ku70 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2do1a1 a.140.2.1 (A:5-46) Nuclear protein hcc-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure